AlfalfaGEDB | Msa0697050

M. sativa cultivar zhongmu-4 / Msa0697050

KEGG: K17279
GO: GO:0001101 GO:0006950 GO:0006970 GO:0006972 GO:0008150 GO:0009266 GO:0009409 GO:0009414 GO:0009415 GO:0009628 GO:0009651 GO:0009719 GO:0009725 GO:0009737 GO:0010033 GO:0010035 GO:0033993 GO:0042221 GO:0042538 GO:0050896 GO:0097305 GO:1901700
PFAM: PF03134.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697050	XP_024636751.1	94.118	68	4	0	1	68	1	68	3.65e-38	142

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697050	G7JV31	94.118	68	4	0	1	68	1	68	2.51e-38	142

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006110	Msa0697050	0.822091	2.851895e-53	-8.615850e-47
Msa0022000	Msa0697050	0.804322	2.283653e-49	-8.615850e-47
Msa0042550	Msa0697050	0.832677	8.246989e-56	-8.615850e-47
Msa0056450	Msa0697050	0.820724	5.897190e-53	-8.615850e-47
Msa0178510	Msa0697050	0.831274	1.832004e-55	-8.615850e-47
Msa0187030	Msa0697050	0.801471	8.865466e-49	-8.615850e-47
Msa0187830	Msa0697050	0.802775	4.781489e-49	-8.615850e-47
Msa0212040	Msa0697050	0.816744	4.721312e-52	-8.615850e-47
Msa0225220	Msa0697050	0.822138	2.780105e-53	-8.615850e-47
Msa0342010	Msa0697050	0.801532	8.615255e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0697050	MtrunA17_Chr4g0049651	94.118	68	4	0	1	68	1	68	4.83e-42	142
Msa0697050	MtrunA17_Chr4g0049671	70.588	68	11	1	1	68	1	59	2.95e-25	96.7
Msa0697050	MtrunA17_Chr4g0049701	80.769	52	10	0	17	68	14	65	1.14e-22	87.8
Msa0697050	MtrunA17_Chr4g0049691	49.550	111	12	3	1	67	1	111	1.01e-20	78.2

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Find 26 sgRNAs with CRISPR-Local

Find 258 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGAATTTACCGTAGAAGA+AGG	0.542698	4_4:+67027911	None:intergenic
AAATAATAAAGTAGTTTAGT+TGG	0.422616	4_4:+67028435	None:intergenic
AATGGAAAAGGAAAAGGAAG+AGG	0.524164	4_4:+67028380	None:intergenic
AGCTTGAATTTGGTAGTAAA+TGG	0.273370	4_4:-67028354	Msa0697050:exon
ATATTCAAAGAGGTAAATTA+AGG	0.374191	4_4:+67027945	None:intergenic
ATTCAAGCTCTGAATGGAAA+AGG	0.480181	4_4:+67028368	None:intergenic
CATACCATGCAAAATGATAA+AGG	0.301623	4_4:+67028297	None:intergenic
CCAAGGATTTGATCTCATAT+TGG	0.353877	4_4:-67027978	Msa0697050:CDS
CCAATATGAGATCAAATCCT+TGG	0.466673	4_4:+67027978	None:intergenic
CGGTTGGGGTTGGAAGTGGG+AGG	0.642159	4_4:+67029272	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TACGGATTTATTCATGTCTT+AGG	-	chr4_4:67027950-67027969	Msa0697050:CDS	30.0%
TATTCATGTCTTAGGATTTG+GGG	-	chr4_4:67027958-67027977	Msa0697050:CDS	30.0%
GAAAATAAGATATACCGACA+CGG	+	chr4_4:67028122-67028141	None:intergenic	30.0%
ACACTATTGAAATAGAAACG+AGG	+	chr4_4:67028414-67028433	None:intergenic	30.0%
AGAAAAGCAACGATACATTT+CGG	+	chr4_4:67028510-67028529	None:intergenic	30.0%
ATAATCAAAACAGTGAAACG+AGG	-	chr4_4:67028684-67028703	Msa0697050:intron	30.0%
ATTGTTGAAATAGAGAAGTG+TGG	-	chr4_4:67028708-67028727	Msa0697050:intron	30.0%
CATACCATGCAAAATGATAA+AGG	+	chr4_4:67029122-67029141	None:intergenic	30.0%
TACGGATTTATTCATGTCTT+AGG	-	chr4_4:67027950-67027969	Msa0697050:CDS	30.0%
TATTCATGTCTTAGGATTTG+GGG	-	chr4_4:67027958-67027977	Msa0697050:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	67027918	67029520	67027918	ID=Msa0697050;Name=Msa0697050
chr4_4	mRNA	67027918	67029520	67027918	ID=Msa0697050-mRNA-1;Parent=Msa0697050;Name=Msa0697050-mRNA-1;_AED=0.48;_eAED=0.48;_QI=259\|1\|0.8\|1\|0\|0\|5\|0\|69
chr4_4	exon	67027918	67028044	67027918	ID=Msa0697050-mRNA-1:exon:19594;Parent=Msa0697050-mRNA-1
chr4_4	exon	67028165	67028191	67028165	ID=Msa0697050-mRNA-1:exon:19593;Parent=Msa0697050-mRNA-1
chr4_4	exon	67028302	67028467	67028302	ID=Msa0697050-mRNA-1:exon:19592;Parent=Msa0697050-mRNA-1
chr4_4	exon	67029285	67029342	67029285	ID=Msa0697050-mRNA-1:exon:19591;Parent=Msa0697050-mRNA-1
chr4_4	exon	67029430	67029520	67029430	ID=Msa0697050-mRNA-1:exon:19590;Parent=Msa0697050-mRNA-1
chr4_4	five_prime_UTR	67029430	67029520	67029430	ID=Msa0697050-mRNA-1:five_prime_utr;Parent=Msa0697050-mRNA-1
chr4_4	five_prime_UTR	67029285	67029342	67029285	ID=Msa0697050-mRNA-1:five_prime_utr;Parent=Msa0697050-mRNA-1
chr4_4	five_prime_UTR	67028358	67028467	67028358	ID=Msa0697050-mRNA-1:five_prime_utr;Parent=Msa0697050-mRNA-1
chr4_4	CDS	67028302	67028357	67028302	ID=Msa0697050-mRNA-1:cds;Parent=Msa0697050-mRNA-1
chr4_4	CDS	67028165	67028191	67028165	ID=Msa0697050-mRNA-1:cds;Parent=Msa0697050-mRNA-1
chr4_4	CDS	67027918	67028044	67027918	ID=Msa0697050-mRNA-1:cds;Parent=Msa0697050-mRNA-1

Gene Sequence	>Msa0697050 ATGGCTTCTTCATGGTTTCTCATACTAGCTTTCAAATGCCTTTATCATTTTGCATGGCCTCTTTTTGCTCTGGTGTATCCTATGTGTGCTTCCGTACAAGCAATTGAAACTGACTCATATGCAGAAACCAAGGATTTGATCTCATATTGGATACTTCTTTCCTTAATTTACCTCTTTGAATATGCTTTTATGAGCCTTCTTCTACGGTAA
Protein sequence	>Msa0697050 MASSWFLILAFKCLYHFAWPLFALVYPMCASVQAIETDSYAETKDLISYWILLSLIYLFEYAFMSLLLR*