Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697050 | XP_024636751.1 | 94.118 | 68 | 4 | 0 | 1 | 68 | 1 | 68 | 3.65e-38 | 142 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697050 | G7JV31 | 94.118 | 68 | 4 | 0 | 1 | 68 | 1 | 68 | 2.51e-38 | 142 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0006110 | Msa0697050 | 0.822091 | 2.851895e-53 | -8.615850e-47 |
| Msa0022000 | Msa0697050 | 0.804322 | 2.283653e-49 | -8.615850e-47 |
| Msa0042550 | Msa0697050 | 0.832677 | 8.246989e-56 | -8.615850e-47 |
| Msa0056450 | Msa0697050 | 0.820724 | 5.897190e-53 | -8.615850e-47 |
| Msa0653660 | Msa0697050 | 0.801119 | 1.046595e-48 | -8.615850e-47 |
| Msa0661320 | Msa0697050 | 0.817705 | 2.871359e-52 | -8.615850e-47 |
| Msa0697030 | Msa0697050 | 0.801489 | 8.791475e-49 | -8.615850e-47 |
| Msa0697040 | Msa0697050 | 0.884192 | 2.365091e-71 | -8.615850e-47 |
| Msa0697050 | Msa0711830 | 0.803584 | 3.251623e-49 | -8.615850e-47 |
| Msa0697050 | Msa0760130 | 0.805735 | 1.156261e-49 | -8.615850e-47 |
| Msa0697050 | Msa0817460 | 0.806908 | 6.546902e-50 | -8.615850e-47 |
| Msa0697050 | Msa0830510 | 0.811639 | 6.330443e-51 | -8.615850e-47 |
| Msa0697050 | Msa0868160 | 0.825036 | 5.833926e-54 | -8.615850e-47 |
| Msa0697050 | Msa0892080 | 0.801861 | 7.373247e-49 | -8.615850e-47 |
| Msa0697050 | Msa0936210 | 0.800617 | 1.324783e-48 | -8.615850e-47 |
| Msa0697050 | Msa1028590 | 0.826888 | 2.118337e-54 | -8.615850e-47 |
| Msa0697050 | Msa1038080 | 0.804143 | 2.488759e-49 | -8.615850e-47 |
| Msa0697050 | Msa1080960 | 0.813042 | 3.126114e-51 | -8.615850e-47 |
| Msa0697050 | Msa1279420 | 0.801950 | 7.070855e-49 | -8.615850e-47 |
| Msa0697050 | Msa1372150 | 0.838633 | 2.561077e-57 | -8.615850e-47 |
| Msa0697050 | Msa1424630 | 0.801779 | 7.663578e-49 | -8.615850e-47 |
| Msa0697050 | Msa1463900 | 0.801199 | 1.008014e-48 | -8.615850e-47 |
| Msa0178510 | Msa0697050 | 0.831274 | 1.832004e-55 | -8.615850e-47 |
| Msa0187030 | Msa0697050 | 0.801471 | 8.865466e-49 | -8.615850e-47 |
| Msa0187830 | Msa0697050 | 0.802775 | 4.781489e-49 | -8.615850e-47 |
| Msa0212040 | Msa0697050 | 0.816744 | 4.721312e-52 | -8.615850e-47 |
| Msa0225220 | Msa0697050 | 0.822138 | 2.780105e-53 | -8.615850e-47 |
| Msa0393620 | Msa0697050 | 0.814545 | 1.458970e-51 | -8.615850e-47 |
| Msa0398200 | Msa0697050 | 0.807979 | 3.879596e-50 | -8.615850e-47 |
| Msa0429090 | Msa0697050 | 0.808676 | 2.755297e-50 | -8.615850e-47 |
| Msa0342010 | Msa0697050 | 0.801532 | 8.615255e-49 | -8.615850e-47 |
| Msa0562570 | Msa0697050 | 0.804384 | 2.216509e-49 | -8.615850e-47 |
| Msa0579660 | Msa0697050 | 0.818389 | 2.010857e-52 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0697050 | MtrunA17_Chr4g0049651 | 94.118 | 68 | 4 | 0 | 1 | 68 | 1 | 68 | 4.83e-42 | 142 |
| Msa0697050 | MtrunA17_Chr4g0049671 | 70.588 | 68 | 11 | 1 | 1 | 68 | 1 | 59 | 2.95e-25 | 96.7 |
| Msa0697050 | MtrunA17_Chr4g0049701 | 80.769 | 52 | 10 | 0 | 17 | 68 | 14 | 65 | 1.14e-22 | 87.8 |
| Msa0697050 | MtrunA17_Chr4g0049691 | 49.550 | 111 | 12 | 3 | 1 | 67 | 1 | 111 | 1.01e-20 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 26 sgRNAs with CRISPR-Local
Find 258 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTTATTCATGTCTTAGGATT+TGG | 0.222733 | 4_4:-67029460 | Msa0697050:five_prime_UTR |
| TTATTCATGTCTTAGGATTT+GGG | 0.258547 | 4_4:-67029459 | Msa0697050:five_prime_UTR |
| TACGGATTTATTCATGTCTT+AGG | 0.270637 | 4_4:-67029466 | Msa0697050:five_prime_UTR |
| AGCTTGAATTTGGTAGTAAA+TGG | 0.273370 | 4_4:-67028354 | Msa0697050:exon |
| TTCCATTCAGAGCTTGAATT+TGG | 0.278982 | 4_4:-67028364 | Msa0697050:five_prime_UTR |
| CATACCATGCAAAATGATAA+AGG | 0.301623 | 4_4:+67028297 | None:intergenic |
| GTAGTTTAGTTGGTATAGTT+TGG | 0.312956 | 4_4:+67028445 | None:intergenic |
| CCAAGGATTTGATCTCATAT+TGG | 0.353877 | 4_4:-67027978 | Msa0697050:CDS |
| GGTAGTAAATGGCTTCTTCA+TGG | 0.362420 | 4_4:-67028343 | Msa0697050:exon |
| ATATTCAAAGAGGTAAATTA+AGG | 0.374191 | 4_4:+67027945 | None:intergenic |
| AAATAATAAAGTAGTTTAGT+TGG | 0.422616 | 4_4:+67028435 | None:intergenic |
| CCAATATGAGATCAAATCCT+TGG | 0.466673 | 4_4:+67027978 | None:intergenic |
| GTCAGTTTCAATTGCTTGTA+CGG | 0.466858 | 4_4:+67028014 | None:intergenic |
| TACCAAATTCAAGCTCTGAA+TGG | 0.472867 | 4_4:+67028362 | None:intergenic |
| ATTCAAGCTCTGAATGGAAA+AGG | 0.480181 | 4_4:+67028368 | None:intergenic |
| GCTCTGAATGGAAAAGGAAA+AGG | 0.511929 | 4_4:+67028374 | None:intergenic |
| AATGGAAAAGGAAAAGGAAG+AGG | 0.524164 | 4_4:+67028380 | None:intergenic |
| GACACGGAGCAAAATATCAT+TGG | 0.524996 | 4_4:+67029313 | None:intergenic |
| GAACGCGCAAAAGTAGATAG+AGG | 0.538114 | 4_4:-67029503 | None:intergenic |
| AAAGAATTTACCGTAGAAGA+AGG | 0.542698 | 4_4:+67027911 | None:intergenic |
| TATTCATGTCTTAGGATTTG+GGG | 0.566928 | 4_4:-67029458 | Msa0697050:five_prime_UTR |
| TCATAAAAGCATATTCAAAG+AGG | 0.621411 | 4_4:+67027935 | None:intergenic |
| GAAAAGTCAGTGTCTTCGTG+AGG | 0.642020 | 4_4:+67028407 | None:intergenic |
| CGGTTGGGGTTGGAAGTGGG+AGG | 0.642159 | 4_4:+67029272 | None:intergenic |
| TGACTCATATGCAGAAACCA+AGG | 0.655333 | 4_4:-67027995 | Msa0697050:CDS |
| GAAAATAAGATATACCGACA+CGG | 0.773589 | 4_4:+67029297 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTTTTTTTTTTTG+AGG | - | chr4_4:67028043-67028062 | Msa0697050:intron | 10.0% |
| !!! | TGTTTTTTTTTTTTTTTTTG+AGG | - | chr4_4:67028043-67028062 | Msa0697050:intron | 10.0% |
| !! | AAAAAAAACATACTTAAAGT+AGG | + | chr4_4:67028033-67028052 | None:intergenic | 15.0% |
| !!! | TTTCTTTGTTTCATTTTTTA+AGG | + | chr4_4:67028284-67028303 | None:intergenic | 15.0% |
| !! | AAATAATAAAGTAGTTTAGT+TGG | + | chr4_4:67028984-67029003 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTTTGTGATTA+TGG | - | chr4_4:67029360-67029379 | Msa0697050:intron | 15.0% |
| !! | AAAAAAAACATACTTAAAGT+AGG | + | chr4_4:67028033-67028052 | None:intergenic | 15.0% |
| !!! | TTTCTTTGTTTCATTTTTTA+AGG | + | chr4_4:67028284-67028303 | None:intergenic | 15.0% |
| !! | AAATAATAAAGTAGTTTAGT+TGG | + | chr4_4:67028984-67029003 | None:intergenic | 15.0% |
| !!! | TTTTTGTTTTTTTGTGATTA+TGG | - | chr4_4:67029360-67029379 | Msa0697050:intron | 15.0% |
| !! | GAAAAAGATGAAGAAAATAA+AGG | + | chr4_4:67029167-67029186 | None:intergenic | 20.0% |
| !! | TGTCAAAACAATAATGTAAA+AGG | + | chr4_4:67029321-67029340 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGATTATGGTTTT+TGG | - | chr4_4:67029367-67029386 | Msa0697050:intron | 20.0% |
| !! | ATATTCAAAGAGGTAAATTA+AGG | + | chr4_4:67029474-67029493 | None:intergenic | 20.0% |
| !! | GAAAAAGATGAAGAAAATAA+AGG | + | chr4_4:67029167-67029186 | None:intergenic | 20.0% |
| !! | TGTCAAAACAATAATGTAAA+AGG | + | chr4_4:67029321-67029340 | None:intergenic | 20.0% |
| !!! | TTTTTTGTGATTATGGTTTT+TGG | - | chr4_4:67029367-67029386 | Msa0697050:intron | 20.0% |
| !! | ATATTCAAAGAGGTAAATTA+AGG | + | chr4_4:67029474-67029493 | None:intergenic | 20.0% |
| ! | GAGGAAAAAAAGTTATAGTA+CGG | - | chr4_4:67027932-67027951 | Msa0697050:CDS | 25.0% |
| ! | TTTATTCATGTCTTAGGATT+TGG | - | chr4_4:67027956-67027975 | Msa0697050:CDS | 25.0% |
| ! | TTATTCATGTCTTAGGATTT+GGG | - | chr4_4:67027957-67027976 | Msa0697050:CDS | 25.0% |
| !! | ATTGAGAAGCATAAAAAACA+AGG | - | chr4_4:67027987-67028006 | Msa0697050:CDS | 25.0% |
| !!! | TTTCATTTTTTAAGGAACAC+TGG | + | chr4_4:67028276-67028295 | None:intergenic | 25.0% |
| ! | AAGATGAAGAAAATAAAGGA+GGG | + | chr4_4:67029163-67029182 | None:intergenic | 25.0% |
| ! | AAAGATGAAGAAAATAAAGG+AGG | + | chr4_4:67029164-67029183 | None:intergenic | 25.0% |
| !! | TTATTTCCTTCTCTTTTTCT+AGG | - | chr4_4:67029225-67029244 | Msa0697050:intron | 25.0% |
| !! | TCATAAAAGCATATTCAAAG+AGG | + | chr4_4:67029484-67029503 | None:intergenic | 25.0% |
| ! | GAGGAAAAAAAGTTATAGTA+CGG | - | chr4_4:67027932-67027951 | Msa0697050:CDS | 25.0% |
| ! | TTTATTCATGTCTTAGGATT+TGG | - | chr4_4:67027956-67027975 | Msa0697050:CDS | 25.0% |
| ! | TTATTCATGTCTTAGGATTT+GGG | - | chr4_4:67027957-67027976 | Msa0697050:CDS | 25.0% |
| !! | ATTGAGAAGCATAAAAAACA+AGG | - | chr4_4:67027987-67028006 | Msa0697050:CDS | 25.0% |
| !!! | TTTCATTTTTTAAGGAACAC+TGG | + | chr4_4:67028276-67028295 | None:intergenic | 25.0% |
| ! | AAGATGAAGAAAATAAAGGA+GGG | + | chr4_4:67029163-67029182 | None:intergenic | 25.0% |
| ! | AAAGATGAAGAAAATAAAGG+AGG | + | chr4_4:67029164-67029183 | None:intergenic | 25.0% |
| !! | TTATTTCCTTCTCTTTTTCT+AGG | - | chr4_4:67029225-67029244 | Msa0697050:intron | 25.0% |
| !! | TCATAAAAGCATATTCAAAG+AGG | + | chr4_4:67029484-67029503 | None:intergenic | 25.0% |
| TACGGATTTATTCATGTCTT+AGG | - | chr4_4:67027950-67027969 | Msa0697050:CDS | 30.0% | |
| TATTCATGTCTTAGGATTTG+GGG | - | chr4_4:67027958-67027977 | Msa0697050:CDS | 30.0% | |
| GAAAATAAGATATACCGACA+CGG | + | chr4_4:67028122-67028141 | None:intergenic | 30.0% | |
| ! | CGTGGCAAAAATGATTTTAA+AGG | - | chr4_4:67028231-67028250 | Msa0697050:intron | 30.0% |
| ACACTATTGAAATAGAAACG+AGG | + | chr4_4:67028414-67028433 | None:intergenic | 30.0% | |
| AGAAAAGCAACGATACATTT+CGG | + | chr4_4:67028510-67028529 | None:intergenic | 30.0% | |
| ! | AAATCTTTGAAAAGGGGAAA+TGG | + | chr4_4:67028627-67028646 | None:intergenic | 30.0% |
| ! | ATTTCCCCTTTTCAAAGATT+TGG | - | chr4_4:67028626-67028645 | Msa0697050:intron | 30.0% |
| ! | TTTCCCCTTTTCAAAGATTT+GGG | - | chr4_4:67028627-67028646 | Msa0697050:intron | 30.0% |
| ! | TGTTCCCAAATCTTTGAAAA+GGG | + | chr4_4:67028634-67028653 | None:intergenic | 30.0% |
| ATAATCAAAACAGTGAAACG+AGG | - | chr4_4:67028684-67028703 | Msa0697050:intron | 30.0% | |
| ATTGTTGAAATAGAGAAGTG+TGG | - | chr4_4:67028708-67028727 | Msa0697050:intron | 30.0% | |
| !! | CGTGGTAAATTTGTTTTCAA+CGG | + | chr4_4:67028880-67028899 | None:intergenic | 30.0% |
| ! | TTAGTTGGTATAGTTTGGTT+GGG | + | chr4_4:67028969-67028988 | None:intergenic | 30.0% |
| ! | TTTAGTTGGTATAGTTTGGT+TGG | + | chr4_4:67028970-67028989 | None:intergenic | 30.0% |
| ! | GTAGTTTAGTTGGTATAGTT+TGG | + | chr4_4:67028974-67028993 | None:intergenic | 30.0% |
| ! | AGCTTGAATTTGGTAGTAAA+TGG | - | chr4_4:67029062-67029081 | Msa0697050:intron | 30.0% |
| ! | AATGCCTTTATCATTTTGCA+TGG | - | chr4_4:67029115-67029134 | Msa0697050:intron | 30.0% |
| CATACCATGCAAAATGATAA+AGG | + | chr4_4:67029122-67029141 | None:intergenic | 30.0% | |
| TACGGATTTATTCATGTCTT+AGG | - | chr4_4:67027950-67027969 | Msa0697050:CDS | 30.0% | |
| TATTCATGTCTTAGGATTTG+GGG | - | chr4_4:67027958-67027977 | Msa0697050:CDS | 30.0% | |
| GAAAATAAGATATACCGACA+CGG | + | chr4_4:67028122-67028141 | None:intergenic | 30.0% | |
| ! | CGTGGCAAAAATGATTTTAA+AGG | - | chr4_4:67028231-67028250 | Msa0697050:intron | 30.0% |
| ACACTATTGAAATAGAAACG+AGG | + | chr4_4:67028414-67028433 | None:intergenic | 30.0% | |
| AGAAAAGCAACGATACATTT+CGG | + | chr4_4:67028510-67028529 | None:intergenic | 30.0% | |
| ! | AAATCTTTGAAAAGGGGAAA+TGG | + | chr4_4:67028627-67028646 | None:intergenic | 30.0% |
| ! | ATTTCCCCTTTTCAAAGATT+TGG | - | chr4_4:67028626-67028645 | Msa0697050:intron | 30.0% |
| ! | TTTCCCCTTTTCAAAGATTT+GGG | - | chr4_4:67028627-67028646 | Msa0697050:intron | 30.0% |
| ! | TGTTCCCAAATCTTTGAAAA+GGG | + | chr4_4:67028634-67028653 | None:intergenic | 30.0% |
| ATAATCAAAACAGTGAAACG+AGG | - | chr4_4:67028684-67028703 | Msa0697050:intron | 30.0% | |
| ATTGTTGAAATAGAGAAGTG+TGG | - | chr4_4:67028708-67028727 | Msa0697050:intron | 30.0% | |
| !! | CGTGGTAAATTTGTTTTCAA+CGG | + | chr4_4:67028880-67028899 | None:intergenic | 30.0% |
| ! | TTAGTTGGTATAGTTTGGTT+GGG | + | chr4_4:67028969-67028988 | None:intergenic | 30.0% |
| ! | TTTAGTTGGTATAGTTTGGT+TGG | + | chr4_4:67028970-67028989 | None:intergenic | 30.0% |
| ! | GTAGTTTAGTTGGTATAGTT+TGG | + | chr4_4:67028974-67028993 | None:intergenic | 30.0% |
| ! | AGCTTGAATTTGGTAGTAAA+TGG | - | chr4_4:67029062-67029081 | Msa0697050:intron | 30.0% |
| ! | AATGCCTTTATCATTTTGCA+TGG | - | chr4_4:67029115-67029134 | Msa0697050:intron | 30.0% |
| CATACCATGCAAAATGATAA+AGG | + | chr4_4:67029122-67029141 | None:intergenic | 30.0% | |
| ATGTAATTAACATGCGAACG+AGG | - | chr4_4:67028078-67028097 | Msa0697050:intron | 35.0% | |
| TGTAATTAACATGCGAACGA+GGG | - | chr4_4:67028079-67028098 | Msa0697050:intron | 35.0% | |
| ! | AATGATATTTTGCTCCGTGT+CGG | - | chr4_4:67028105-67028124 | Msa0697050:intron | 35.0% |
| GAAGAATGGGTAATGAAAAG+AGG | + | chr4_4:67028321-67028340 | None:intergenic | 35.0% | |
| AGAGGGTAAAGAAGAAGAAT+GGG | + | chr4_4:67028334-67028353 | None:intergenic | 35.0% | |
| AAGAGGGTAAAGAAGAAGAA+TGG | + | chr4_4:67028335-67028354 | None:intergenic | 35.0% | |
| ATAGAAACGAGGAAGAATAG+CGG | + | chr4_4:67028403-67028422 | None:intergenic | 35.0% | |
| ! | CTCCCTTTTATTCGTTTCAA+CGG | - | chr4_4:67028446-67028465 | Msa0697050:five_prime_UTR | 35.0% |
| ! | GTTCCCAAATCTTTGAAAAG+GGG | + | chr4_4:67028633-67028652 | None:intergenic | 35.0% |
| ! | CTGTTCCCAAATCTTTGAAA+AGG | + | chr4_4:67028635-67028654 | None:intergenic | 35.0% |
| TACTTGTCCAGTTTCTCAAT+TGG | + | chr4_4:67028921-67028940 | None:intergenic | 35.0% | |
| AAACTGGACAAGTAACAAAC+TGG | - | chr4_4:67028927-67028946 | Msa0697050:intron | 35.0% | |
| ! | TAGTTGGTATAGTTTGGTTG+GGG | + | chr4_4:67028968-67028987 | None:intergenic | 35.0% |
| AATGGAAAAGGAAAAGGAAG+AGG | + | chr4_4:67029039-67029058 | None:intergenic | 35.0% | |
| !! | ATTCAAGCTCTGAATGGAAA+AGG | + | chr4_4:67029051-67029070 | None:intergenic | 35.0% |
| TTCCATTCAGAGCTTGAATT+TGG | - | chr4_4:67029052-67029071 | Msa0697050:intron | 35.0% | |
| !! | TACCAAATTCAAGCTCTGAA+TGG | + | chr4_4:67029057-67029076 | None:intergenic | 35.0% |
| TCCTATGTAAGTTCTTGATC+TGG | - | chr4_4:67029268-67029287 | Msa0697050:intron | 35.0% | |
| !! | TGTGATTATGGTTTTTGGAC+AGG | - | chr4_4:67029372-67029391 | Msa0697050:intron | 35.0% |
| GTCAGTTTCAATTGCTTGTA+CGG | + | chr4_4:67029405-67029424 | None:intergenic | 35.0% | |
| CCAATATGAGATCAAATCCT+TGG | + | chr4_4:67029441-67029460 | None:intergenic | 35.0% | |
| CCAAGGATTTGATCTCATAT+TGG | - | chr4_4:67029438-67029457 | Msa0697050:five_prime_UTR | 35.0% | |
| ! | CTTTTATGAGCCTTCTTCTA+CGG | - | chr4_4:67029495-67029514 | Msa0697050:five_prime_UTR | 35.0% |
| ATGTAATTAACATGCGAACG+AGG | - | chr4_4:67028078-67028097 | Msa0697050:intron | 35.0% | |
| TGTAATTAACATGCGAACGA+GGG | - | chr4_4:67028079-67028098 | Msa0697050:intron | 35.0% | |
| ! | AATGATATTTTGCTCCGTGT+CGG | - | chr4_4:67028105-67028124 | Msa0697050:intron | 35.0% |
| GAAGAATGGGTAATGAAAAG+AGG | + | chr4_4:67028321-67028340 | None:intergenic | 35.0% | |
| AGAGGGTAAAGAAGAAGAAT+GGG | + | chr4_4:67028334-67028353 | None:intergenic | 35.0% | |
| AAGAGGGTAAAGAAGAAGAA+TGG | + | chr4_4:67028335-67028354 | None:intergenic | 35.0% | |
| ATAGAAACGAGGAAGAATAG+CGG | + | chr4_4:67028403-67028422 | None:intergenic | 35.0% | |
| ! | CTCCCTTTTATTCGTTTCAA+CGG | - | chr4_4:67028446-67028465 | Msa0697050:five_prime_UTR | 35.0% |
| ! | GTTCCCAAATCTTTGAAAAG+GGG | + | chr4_4:67028633-67028652 | None:intergenic | 35.0% |
| ! | CTGTTCCCAAATCTTTGAAA+AGG | + | chr4_4:67028635-67028654 | None:intergenic | 35.0% |
| TACTTGTCCAGTTTCTCAAT+TGG | + | chr4_4:67028921-67028940 | None:intergenic | 35.0% | |
| AAACTGGACAAGTAACAAAC+TGG | - | chr4_4:67028927-67028946 | Msa0697050:intron | 35.0% | |
| ! | TAGTTGGTATAGTTTGGTTG+GGG | + | chr4_4:67028968-67028987 | None:intergenic | 35.0% |
| AATGGAAAAGGAAAAGGAAG+AGG | + | chr4_4:67029039-67029058 | None:intergenic | 35.0% | |
| !! | ATTCAAGCTCTGAATGGAAA+AGG | + | chr4_4:67029051-67029070 | None:intergenic | 35.0% |
| TTCCATTCAGAGCTTGAATT+TGG | - | chr4_4:67029052-67029071 | Msa0697050:intron | 35.0% | |
| !! | TACCAAATTCAAGCTCTGAA+TGG | + | chr4_4:67029057-67029076 | None:intergenic | 35.0% |
| TCCTATGTAAGTTCTTGATC+TGG | - | chr4_4:67029268-67029287 | Msa0697050:intron | 35.0% | |
| !! | TGTGATTATGGTTTTTGGAC+AGG | - | chr4_4:67029372-67029391 | Msa0697050:intron | 35.0% |
| GTCAGTTTCAATTGCTTGTA+CGG | + | chr4_4:67029405-67029424 | None:intergenic | 35.0% | |
| CCAATATGAGATCAAATCCT+TGG | + | chr4_4:67029441-67029460 | None:intergenic | 35.0% | |
| CCAAGGATTTGATCTCATAT+TGG | - | chr4_4:67029438-67029457 | Msa0697050:five_prime_UTR | 35.0% | |
| ! | CTTTTATGAGCCTTCTTCTA+CGG | - | chr4_4:67029495-67029514 | Msa0697050:five_prime_UTR | 35.0% |
| AAGGAAAATGCACAACGAGA+GGG | - | chr4_4:67028006-67028025 | Msa0697050:CDS | 40.0% | |
| GACACGGAGCAAAATATCAT+TGG | + | chr4_4:67028106-67028125 | None:intergenic | 40.0% | |
| ACAGGAAAACTGGAGCAAAA+GGG | + | chr4_4:67028190-67028209 | None:intergenic | 40.0% | |
| AACAGGAAAACTGGAGCAAA+AGG | + | chr4_4:67028191-67028210 | None:intergenic | 40.0% | |
| GGTGAAGTAAACAGGAAAAC+TGG | + | chr4_4:67028200-67028219 | None:intergenic | 40.0% | |
| CATACATCGGTGAAGTAAAC+AGG | + | chr4_4:67028208-67028227 | None:intergenic | 40.0% | |
| ! | TTTTGCCACGTGTCATACAT+CGG | + | chr4_4:67028221-67028240 | None:intergenic | 40.0% |
| CGCCGTTGAAACGAATAAAA+GGG | + | chr4_4:67028451-67028470 | None:intergenic | 40.0% | |
| ATACATTTCGGAGTCCGTAT+TGG | + | chr4_4:67028498-67028517 | None:intergenic | 40.0% | |
| TACAGCTAACAACAGTGTGT+CGG | - | chr4_4:67028745-67028764 | Msa0697050:intron | 40.0% | |
| ! | AAAGGGATGGAAGAGCATAA+TGG | - | chr4_4:67028811-67028830 | Msa0697050:intron | 40.0% |
| ! | TGGAAGAGCATAATGGAGTA+TGG | - | chr4_4:67028818-67028837 | Msa0697050:intron | 40.0% |
| GACGAAACCAATTGAGAAAC+TGG | - | chr4_4:67028911-67028930 | Msa0697050:intron | 40.0% | |
| ! | AGTTGGTATAGTTTGGTTGG+GGG | + | chr4_4:67028967-67028986 | None:intergenic | 40.0% |
| ! | GCTCTGAATGGAAAAGGAAA+AGG | + | chr4_4:67029045-67029064 | None:intergenic | 40.0% |
| GGTAGTAAATGGCTTCTTCA+TGG | - | chr4_4:67029073-67029092 | Msa0697050:intron | 40.0% | |
| AAGAGGCCTAGAAAAAGAGA+AGG | + | chr4_4:67029234-67029253 | None:intergenic | 40.0% | |
| GCCAGATCAAGAACTTACAT+AGG | + | chr4_4:67029272-67029291 | None:intergenic | 40.0% | |
| AAGTTCTTGATCTGGCTGTT+TGG | - | chr4_4:67029276-67029295 | Msa0697050:intron | 40.0% | |
| TGACTCATATGCAGAAACCA+AGG | - | chr4_4:67029421-67029440 | Msa0697050:intron | 40.0% | |
| AAGGAAAATGCACAACGAGA+GGG | - | chr4_4:67028006-67028025 | Msa0697050:CDS | 40.0% | |
| GACACGGAGCAAAATATCAT+TGG | + | chr4_4:67028106-67028125 | None:intergenic | 40.0% | |
| ACAGGAAAACTGGAGCAAAA+GGG | + | chr4_4:67028190-67028209 | None:intergenic | 40.0% | |
| AACAGGAAAACTGGAGCAAA+AGG | + | chr4_4:67028191-67028210 | None:intergenic | 40.0% | |
| GGTGAAGTAAACAGGAAAAC+TGG | + | chr4_4:67028200-67028219 | None:intergenic | 40.0% | |
| CATACATCGGTGAAGTAAAC+AGG | + | chr4_4:67028208-67028227 | None:intergenic | 40.0% | |
| ! | TTTTGCCACGTGTCATACAT+CGG | + | chr4_4:67028221-67028240 | None:intergenic | 40.0% |
| CGCCGTTGAAACGAATAAAA+GGG | + | chr4_4:67028451-67028470 | None:intergenic | 40.0% | |
| ATACATTTCGGAGTCCGTAT+TGG | + | chr4_4:67028498-67028517 | None:intergenic | 40.0% | |
| TACAGCTAACAACAGTGTGT+CGG | - | chr4_4:67028745-67028764 | Msa0697050:intron | 40.0% | |
| ! | AAAGGGATGGAAGAGCATAA+TGG | - | chr4_4:67028811-67028830 | Msa0697050:intron | 40.0% |
| ! | TGGAAGAGCATAATGGAGTA+TGG | - | chr4_4:67028818-67028837 | Msa0697050:intron | 40.0% |
| GACGAAACCAATTGAGAAAC+TGG | - | chr4_4:67028911-67028930 | Msa0697050:intron | 40.0% | |
| ! | AGTTGGTATAGTTTGGTTGG+GGG | + | chr4_4:67028967-67028986 | None:intergenic | 40.0% |
| ! | GCTCTGAATGGAAAAGGAAA+AGG | + | chr4_4:67029045-67029064 | None:intergenic | 40.0% |
| GGTAGTAAATGGCTTCTTCA+TGG | - | chr4_4:67029073-67029092 | Msa0697050:intron | 40.0% | |
| AAGAGGCCTAGAAAAAGAGA+AGG | + | chr4_4:67029234-67029253 | None:intergenic | 40.0% | |
| GCCAGATCAAGAACTTACAT+AGG | + | chr4_4:67029272-67029291 | None:intergenic | 40.0% | |
| AAGTTCTTGATCTGGCTGTT+TGG | - | chr4_4:67029276-67029295 | Msa0697050:intron | 40.0% | |
| TGACTCATATGCAGAAACCA+AGG | - | chr4_4:67029421-67029440 | Msa0697050:intron | 40.0% | |
| CAAGGAAAATGCACAACGAG+AGG | - | chr4_4:67028005-67028024 | Msa0697050:CDS | 45.0% | |
| CAGGAAAACTGGAGCAAAAG+GGG | + | chr4_4:67028189-67028208 | None:intergenic | 45.0% | |
| GCGCCGTTGAAACGAATAAA+AGG | + | chr4_4:67028452-67028471 | None:intergenic | 45.0% | |
| CGAGAGAAAGAGTGATCATG+TGG | - | chr4_4:67028532-67028551 | Msa0697050:intron | 45.0% | |
| ATCGGAAATCGGAGCAGATT+CGG | + | chr4_4:67028568-67028587 | None:intergenic | 45.0% | |
| ! | CGATTGTGTCGATCGGAAAT+CGG | + | chr4_4:67028579-67028598 | None:intergenic | 45.0% |
| ! | GTAGAAGCGATTGTGTCGAT+CGG | + | chr4_4:67028586-67028605 | None:intergenic | 45.0% |
| AGGGGAAATGGCAAAAACGA+CGG | + | chr4_4:67028615-67028634 | None:intergenic | 45.0% | |
| ! | TAGAGAAGTGTGGTTGAGCA+TGG | - | chr4_4:67028718-67028737 | Msa0697050:intron | 45.0% |
| TCGGAGAAGAAGAGAGAAGA+GGG | - | chr4_4:67028764-67028783 | Msa0697050:intron | 45.0% | |
| ACGTCGAAACTGAGAGAGAA+AGG | - | chr4_4:67028793-67028812 | Msa0697050:intron | 45.0% | |
| CGTCGAAACTGAGAGAGAAA+GGG | - | chr4_4:67028794-67028813 | Msa0697050:intron | 45.0% | |
| GAAACTGAGAGAGAAAGGGA+TGG | - | chr4_4:67028798-67028817 | Msa0697050:intron | 45.0% | |
| ! | TATGGAGCATCATAGAGCAC+TGG | - | chr4_4:67028836-67028855 | Msa0697050:intron | 45.0% |
| GAAAAGTCAGTGTCTTCGTG+AGG | + | chr4_4:67029012-67029031 | None:intergenic | 45.0% | |
| ! | TTCTAGGCCTCTTTTTGCTC+TGG | - | chr4_4:67029241-67029260 | Msa0697050:intron | 45.0% |
| GGATACACCAGAGCAAAAAG+AGG | + | chr4_4:67029251-67029270 | None:intergenic | 45.0% | |
| CAAGGAAAATGCACAACGAG+AGG | - | chr4_4:67028005-67028024 | Msa0697050:CDS | 45.0% | |
| CAGGAAAACTGGAGCAAAAG+GGG | + | chr4_4:67028189-67028208 | None:intergenic | 45.0% | |
| GCGCCGTTGAAACGAATAAA+AGG | + | chr4_4:67028452-67028471 | None:intergenic | 45.0% | |
| CGAGAGAAAGAGTGATCATG+TGG | - | chr4_4:67028532-67028551 | Msa0697050:intron | 45.0% | |
| ATCGGAAATCGGAGCAGATT+CGG | + | chr4_4:67028568-67028587 | None:intergenic | 45.0% | |
| ! | CGATTGTGTCGATCGGAAAT+CGG | + | chr4_4:67028579-67028598 | None:intergenic | 45.0% |
| ! | GTAGAAGCGATTGTGTCGAT+CGG | + | chr4_4:67028586-67028605 | None:intergenic | 45.0% |
| AGGGGAAATGGCAAAAACGA+CGG | + | chr4_4:67028615-67028634 | None:intergenic | 45.0% | |
| ! | TAGAGAAGTGTGGTTGAGCA+TGG | - | chr4_4:67028718-67028737 | Msa0697050:intron | 45.0% |
| TCGGAGAAGAAGAGAGAAGA+GGG | - | chr4_4:67028764-67028783 | Msa0697050:intron | 45.0% | |
| ACGTCGAAACTGAGAGAGAA+AGG | - | chr4_4:67028793-67028812 | Msa0697050:intron | 45.0% | |
| CGTCGAAACTGAGAGAGAAA+GGG | - | chr4_4:67028794-67028813 | Msa0697050:intron | 45.0% | |
| GAAACTGAGAGAGAAAGGGA+TGG | - | chr4_4:67028798-67028817 | Msa0697050:intron | 45.0% | |
| ! | TATGGAGCATCATAGAGCAC+TGG | - | chr4_4:67028836-67028855 | Msa0697050:intron | 45.0% |
| GAAAAGTCAGTGTCTTCGTG+AGG | + | chr4_4:67029012-67029031 | None:intergenic | 45.0% | |
| ! | TTCTAGGCCTCTTTTTGCTC+TGG | - | chr4_4:67029241-67029260 | Msa0697050:intron | 45.0% |
| GGATACACCAGAGCAAAAAG+AGG | + | chr4_4:67029251-67029270 | None:intergenic | 45.0% | |
| AAACTGGAGCAAAAGGGGAC+TGG | + | chr4_4:67028184-67028203 | None:intergenic | 50.0% | |
| CTTCACCGATGTATGACACG+TGG | - | chr4_4:67028213-67028232 | Msa0697050:intron | 50.0% | |
| AGGAGTTGTGGAGGACTGAA+CGG | + | chr4_4:67028360-67028379 | None:intergenic | 50.0% | |
| ! | ACGAGGAAGAATAGCGGAGA+CGG | + | chr4_4:67028397-67028416 | None:intergenic | 50.0% |
| ! | AGTCCGTATTGGAGGTGTAG+CGG | + | chr4_4:67028487-67028506 | None:intergenic | 50.0% |
| CATTTCGGAGTCCGTATTGG+AGG | + | chr4_4:67028495-67028514 | None:intergenic | 50.0% | |
| GTCGGAGAAGAAGAGAGAAG+AGG | - | chr4_4:67028763-67028782 | Msa0697050:intron | 50.0% | |
| TTTCGTCGATACGTGACACG+TGG | + | chr4_4:67028898-67028917 | None:intergenic | 50.0% | |
| ATAGTTTGGTTGGGGGAGTG+CGG | + | chr4_4:67028960-67028979 | None:intergenic | 50.0% | |
| AAACTGGAGCAAAAGGGGAC+TGG | + | chr4_4:67028184-67028203 | None:intergenic | 50.0% | |
| CTTCACCGATGTATGACACG+TGG | - | chr4_4:67028213-67028232 | Msa0697050:intron | 50.0% | |
| AGGAGTTGTGGAGGACTGAA+CGG | + | chr4_4:67028360-67028379 | None:intergenic | 50.0% | |
| ! | ACGAGGAAGAATAGCGGAGA+CGG | + | chr4_4:67028397-67028416 | None:intergenic | 50.0% |
| ! | AGTCCGTATTGGAGGTGTAG+CGG | + | chr4_4:67028487-67028506 | None:intergenic | 50.0% |
| CATTTCGGAGTCCGTATTGG+AGG | + | chr4_4:67028495-67028514 | None:intergenic | 50.0% | |
| GTCGGAGAAGAAGAGAGAAG+AGG | - | chr4_4:67028763-67028782 | Msa0697050:intron | 50.0% | |
| TTTCGTCGATACGTGACACG+TGG | + | chr4_4:67028898-67028917 | None:intergenic | 50.0% | |
| ATAGTTTGGTTGGGGGAGTG+CGG | + | chr4_4:67028960-67028979 | None:intergenic | 50.0% | |
| ACTCGGTTGGGGTTGGAAGT+GGG | + | chr4_4:67028150-67028169 | None:intergenic | 55.0% | |
| GGAGGACTGAACGGAGAAGA+GGG | + | chr4_4:67028351-67028370 | None:intergenic | 55.0% | |
| TGGAGGACTGAACGGAGAAG+AGG | + | chr4_4:67028352-67028371 | None:intergenic | 55.0% | |
| ! | AAGAATAGCGGAGACGGTGG+CGG | + | chr4_4:67028391-67028410 | None:intergenic | 55.0% |
| ! | AGGAAGAATAGCGGAGACGG+TGG | + | chr4_4:67028394-67028413 | None:intergenic | 55.0% |
| ACTCGGTTGGGGTTGGAAGT+GGG | + | chr4_4:67028150-67028169 | None:intergenic | 55.0% | |
| GGAGGACTGAACGGAGAAGA+GGG | + | chr4_4:67028351-67028370 | None:intergenic | 55.0% | |
| TGGAGGACTGAACGGAGAAG+AGG | + | chr4_4:67028352-67028371 | None:intergenic | 55.0% | |
| ! | AAGAATAGCGGAGACGGTGG+CGG | + | chr4_4:67028391-67028410 | None:intergenic | 55.0% |
| ! | AGGAAGAATAGCGGAGACGG+TGG | + | chr4_4:67028394-67028413 | None:intergenic | 55.0% |
| CACTCGGTTGGGGTTGGAAG+TGG | + | chr4_4:67028151-67028170 | None:intergenic | 60.0% | |
| CTTCCAACCCCAACCGAGTG+CGG | - | chr4_4:67028151-67028170 | Msa0697050:intron | 60.0% | |
| AGCAGATCCGCACTCGGTTG+GGG | + | chr4_4:67028161-67028180 | None:intergenic | 60.0% | |
| GAGCAGATCCGCACTCGGTT+GGG | + | chr4_4:67028162-67028181 | None:intergenic | 60.0% | |
| GACTGGAGCAGATCCGCACT+CGG | + | chr4_4:67028167-67028186 | None:intergenic | 60.0% | |
| ! | GCGTAGTGGAGGAGTTGTGG+AGG | + | chr4_4:67028369-67028388 | None:intergenic | 60.0% |
| GCGCCGCTACACCTCCAATA+CGG | - | chr4_4:67028481-67028500 | Msa0697050:intron | 60.0% | |
| CACTCGGTTGGGGTTGGAAG+TGG | + | chr4_4:67028151-67028170 | None:intergenic | 60.0% | |
| CTTCCAACCCCAACCGAGTG+CGG | - | chr4_4:67028151-67028170 | Msa0697050:intron | 60.0% | |
| AGCAGATCCGCACTCGGTTG+GGG | + | chr4_4:67028161-67028180 | None:intergenic | 60.0% | |
| GAGCAGATCCGCACTCGGTT+GGG | + | chr4_4:67028162-67028181 | None:intergenic | 60.0% | |
| GACTGGAGCAGATCCGCACT+CGG | + | chr4_4:67028167-67028186 | None:intergenic | 60.0% | |
| ! | GCGTAGTGGAGGAGTTGTGG+AGG | + | chr4_4:67028369-67028388 | None:intergenic | 60.0% |
| GCGCCGCTACACCTCCAATA+CGG | - | chr4_4:67028481-67028500 | Msa0697050:intron | 60.0% | |
| CGGTTGGGGTTGGAAGTGGG+AGG | + | chr4_4:67028147-67028166 | None:intergenic | 65.0% | |
| GATCCGCACTCGGTTGGGGT+TGG | + | chr4_4:67028157-67028176 | None:intergenic | 65.0% | |
| GGAGCAGATCCGCACTCGGT+TGG | + | chr4_4:67028163-67028182 | None:intergenic | 65.0% | |
| ! | GCGGCGTAGTGGAGGAGTTG+TGG | + | chr4_4:67028372-67028391 | None:intergenic | 65.0% |
| CGGTTGGGGTTGGAAGTGGG+AGG | + | chr4_4:67028147-67028166 | None:intergenic | 65.0% | |
| GATCCGCACTCGGTTGGGGT+TGG | + | chr4_4:67028157-67028176 | None:intergenic | 65.0% | |
| GGAGCAGATCCGCACTCGGT+TGG | + | chr4_4:67028163-67028182 | None:intergenic | 65.0% | |
| ! | GCGGCGTAGTGGAGGAGTTG+TGG | + | chr4_4:67028372-67028391 | None:intergenic | 65.0% |
| ! | AGACGGTGGCGGCGTAGTGG+AGG | + | chr4_4:67028380-67028399 | None:intergenic | 70.0% |
| GTTTCAACGGCGCCCCGCCA+CGG | - | chr4_4:67028459-67028478 | Msa0697050:intron | 70.0% | |
| ! | TTGGAGGTGTAGCGGCGCCG+TGG | + | chr4_4:67028479-67028498 | None:intergenic | 70.0% |
| ! | AGACGGTGGCGGCGTAGTGG+AGG | + | chr4_4:67028380-67028399 | None:intergenic | 70.0% |
| GTTTCAACGGCGCCCCGCCA+CGG | - | chr4_4:67028459-67028478 | Msa0697050:intron | 70.0% | |
| ! | TTGGAGGTGTAGCGGCGCCG+TGG | + | chr4_4:67028479-67028498 | None:intergenic | 70.0% |
| ! | CGGAGACGGTGGCGGCGTAG+TGG | + | chr4_4:67028383-67028402 | None:intergenic | 75.0% |
| AGGTGTAGCGGCGCCGTGGC+GGG | + | chr4_4:67028475-67028494 | None:intergenic | 75.0% | |
| GAGGTGTAGCGGCGCCGTGG+CGG | + | chr4_4:67028476-67028495 | None:intergenic | 75.0% | |
| ! | CGGAGACGGTGGCGGCGTAG+TGG | + | chr4_4:67028383-67028402 | None:intergenic | 75.0% |
| AGGTGTAGCGGCGCCGTGGC+GGG | + | chr4_4:67028475-67028494 | None:intergenic | 75.0% | |
| GAGGTGTAGCGGCGCCGTGG+CGG | + | chr4_4:67028476-67028495 | None:intergenic | 75.0% | |
| ! | GGTGTAGCGGCGCCGTGGCG+GGG | + | chr4_4:67028474-67028493 | None:intergenic | 80.0% |
| ! | GGTGTAGCGGCGCCGTGGCG+GGG | + | chr4_4:67028474-67028493 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 67027918 | 67029520 | 67027918 | ID=Msa0697050;Name=Msa0697050 |
| chr4_4 | mRNA | 67027918 | 67029520 | 67027918 | ID=Msa0697050-mRNA-1;Parent=Msa0697050;Name=Msa0697050-mRNA-1;_AED=0.48;_eAED=0.48;_QI=259|1|0.8|1|0|0|5|0|69 |
| chr4_4 | exon | 67027918 | 67028044 | 67027918 | ID=Msa0697050-mRNA-1:exon:19594;Parent=Msa0697050-mRNA-1 |
| chr4_4 | exon | 67028165 | 67028191 | 67028165 | ID=Msa0697050-mRNA-1:exon:19593;Parent=Msa0697050-mRNA-1 |
| chr4_4 | exon | 67028302 | 67028467 | 67028302 | ID=Msa0697050-mRNA-1:exon:19592;Parent=Msa0697050-mRNA-1 |
| chr4_4 | exon | 67029285 | 67029342 | 67029285 | ID=Msa0697050-mRNA-1:exon:19591;Parent=Msa0697050-mRNA-1 |
| chr4_4 | exon | 67029430 | 67029520 | 67029430 | ID=Msa0697050-mRNA-1:exon:19590;Parent=Msa0697050-mRNA-1 |
| chr4_4 | five_prime_UTR | 67029430 | 67029520 | 67029430 | ID=Msa0697050-mRNA-1:five_prime_utr;Parent=Msa0697050-mRNA-1 |
| chr4_4 | five_prime_UTR | 67029285 | 67029342 | 67029285 | ID=Msa0697050-mRNA-1:five_prime_utr;Parent=Msa0697050-mRNA-1 |
| chr4_4 | five_prime_UTR | 67028358 | 67028467 | 67028358 | ID=Msa0697050-mRNA-1:five_prime_utr;Parent=Msa0697050-mRNA-1 |
| chr4_4 | CDS | 67028302 | 67028357 | 67028302 | ID=Msa0697050-mRNA-1:cds;Parent=Msa0697050-mRNA-1 |
| chr4_4 | CDS | 67028165 | 67028191 | 67028165 | ID=Msa0697050-mRNA-1:cds;Parent=Msa0697050-mRNA-1 |
| chr4_4 | CDS | 67027918 | 67028044 | 67027918 | ID=Msa0697050-mRNA-1:cds;Parent=Msa0697050-mRNA-1 |
| Gene Sequence |
| Protein sequence |
