AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0653660


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653660 MtrunA17_Chr4g0048001 87.110 481 31 3 1 481 1 450 0.0 820
Msa0653660 MtrunA17_Chr2g0281361 62.851 498 136 9 1 481 1 466 0.0 594
Msa0653660 MtrunA17_Chr8g0360681 53.941 406 156 4 78 481 2 378 3.14e-149 431
Msa0653660 MtrunA17_Chr4g0052431 35.912 362 174 10 99 458 90 395 3.02e-58 198
Msa0653660 MtrunA17_Chr2g0281081 28.436 422 230 16 70 472 37 405 3.48e-27 113
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0653660 AT5G54390.1 51.980 404 148 8 85 481 9 373 8.61e-128 376
Msa0653660 AT5G63980.1 36.181 398 197 10 82 477 3 345 8.64e-63 208
Msa0653660 AT5G09290.1 33.838 396 193 11 82 475 3 331 3.66e-56 191
Msa0653660 AT5G64000.1 34.521 365 183 7 82 445 3 312 2.06e-54 186
Msa0653660 AT5G63990.1 31.061 396 213 11 82 475 3 340 3.28e-50 175
Msa0653660 AT5G64000.2 36.986 292 155 6 154 445 7 269 7.20e-50 172
Msa0653660 AT5G63990.2 28.035 346 192 8 82 425 3 293 6.27e-38 140
Msa0653660 AT4G05090.1 28.132 423 224 16 70 475 34 393 7.14e-25 106

Find 127 sgRNAs with CRISPR-Local

Find 366 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAAGTGGTGGTTGGTGTTCT+TGG 0.150165 4_3:+61825574 Msa0653660:CDS
GGATATTATCTGAATGTTTA+AGG 0.159182 4_3:+61825251 Msa0653660:CDS
TGGCTCATAGTGTTGGTTTC+AGG 0.188462 4_3:+61825893 Msa0653660:CDS
GGGTTCCTTCCGGAAGATTT+TGG 0.189270 4_3:+61825470 Msa0653660:CDS
TGGCCACACAAACTTCTTAT+TGG 0.235482 4_3:-61825764 None:intergenic
AATAAGAGGGAATAGAAAAT+TGG 0.244834 4_3:-61823723 None:intergenic
AAGTCCTCTTGATGGCAAAA+TGG 0.254030 4_3:+61825498 Msa0653660:CDS
TGTGTATTGTTTGAAATATA+TGG 0.260273 4_3:+61827963 Msa0653660:three_prime_UTR
CTAGCTGAAGCACCTCTATT+TGG 0.265243 4_3:+61825376 Msa0653660:CDS
TAGCCATATATGGATTTATA+TGG 0.269965 4_3:+61824231 Msa0653660:intron
AAACTATTCTTCTCCCTTGA+TGG 0.310707 4_3:+61823953 Msa0653660:CDS
CTGGTTACAAAGAGAAAATA+TGG 0.313107 4_3:+61827561 Msa0653660:CDS
AAGTGGTGGTTGGTGTTCTT+GGG 0.325198 4_3:+61825575 Msa0653660:CDS
AAAGGTTCATCATATTTAGA+AGG 0.326132 4_3:+61827665 Msa0653660:CDS
ATCATGCTCTTAACTCCTAA+TGG 0.327765 4_3:-61827482 None:intergenic
GGCAAAATGGGATTTGTAAA+TGG 0.334467 4_3:+61825511 Msa0653660:CDS
AGTAGAGTACAACAAGTTAT+TGG 0.343066 4_3:-61823752 None:intergenic
TGACAGCAACATCCAATTCT+TGG 0.346167 4_3:-61824025 None:intergenic
AGAGAAATATTCCCAAGAAT+TGG 0.348039 4_3:+61824013 Msa0653660:CDS
TCCTTTCTCATAGGGTAGTT+AGG 0.348690 4_3:-61825601 None:intergenic
CCAAGCCAGTCCTTTCTCAT+AGG 0.354628 4_3:-61825610 None:intergenic
ATTCCATATAAATCCATATA+TGG 0.355408 4_3:-61824234 None:intergenic
GTTATCAGCAAAGTTATCAT+AGG 0.362327 4_3:+61825632 Msa0653660:CDS
CTTGGATGACTTGGAAATCA+AGG 0.362527 4_3:-61824093 None:intergenic
GAAGTTCCAAGAGCTGATTT+TGG 0.366195 4_3:-61825409 None:intergenic
GTTATTGGTATTGTAATAAG+AGG 0.377260 4_3:-61823737 None:intergenic
GATATTATCTGAATGTTTAA+GGG 0.393568 4_3:+61825252 Msa0653660:CDS
TTAGTCACTTCAACTCGGTT+GGG 0.396353 4_3:+61825449 Msa0653660:CDS
TGGGCACTAAGTCCTCTTGA+TGG 0.407243 4_3:+61825490 Msa0653660:CDS
ATAAGAGGGAATAGAAAATT+GGG 0.411907 4_3:-61823722 None:intergenic
AATTAGCCTTCTCAACTGTT+TGG 0.413234 4_3:-61825846 None:intergenic
AGTTCCTTGGATTTCTCTAA+AGG 0.418901 4_3:+61827647 Msa0653660:CDS
AACTCGGTTGGGGTTCCTTC+CGG 0.422468 4_3:+61825460 Msa0653660:CDS
AGTCCTCTTGATGGCAAAAT+GGG 0.427961 4_3:+61825499 Msa0653660:CDS
AGATGCTAGGGGCAGTTCCT+TGG 0.429138 4_3:+61827634 Msa0653660:CDS
ATTGCAATCCTTGGATGACT+TGG 0.429607 4_3:-61824102 None:intergenic
TTCCTCCAACATCTGAAACT+TGG 0.438895 4_3:+61825671 Msa0653660:CDS
AGATGCTGTTGATGCTAGTT+GGG 0.440882 4_3:+61827742 Msa0653660:CDS
GTATGCAGCAATAAACCATT+AGG 0.441863 4_3:+61827467 Msa0653660:intron
TTTCCATGTTTCAATATATG+TGG 0.446055 4_3:-61823813 None:intergenic
CAAACTTCTTATTGGCATGA+TGG 0.448268 4_3:-61825756 None:intergenic
ACTTAGTGCCCAAAATCTTC+CGG 0.450046 4_3:-61825479 None:intergenic
TTGTGTAATTTATGCTAAGA+AGG 0.451637 4_3:+61825702 Msa0653660:CDS
ATTACATAATACATGTAGAT+AGG 0.454489 4_3:-61827807 None:intergenic
GGTGCTTCAACTCCAAATAG+AGG 0.454546 4_3:-61825388 None:intergenic
GACAGCAACATCCAATTCTT+GGG 0.457973 4_3:-61824024 None:intergenic
GACATAGAGAGCAAGCCATC+TGG 0.458291 4_3:-61824055 None:intergenic
GACTGAAGAATTGCAATCCT+TGG 0.459995 4_3:-61824111 None:intergenic
CTGTCTTCTGTTGACAACCT+AGG 0.463904 4_3:+61825808 Msa0653660:CDS
GGCACAAAGTGGCCAATCCT+AGG 0.464271 4_3:-61825825 None:intergenic
GTGTTAGATTGCAATAACTT+TGG 0.475206 4_3:+61824272 Msa0653660:CDS
AGGGAATAGAAAATTGGGAT+TGG 0.478917 4_3:-61823717 None:intergenic
ATTAGTCACTTCAACTCGGT+TGG 0.480424 4_3:+61825448 Msa0653660:CDS
GAAGCACCAAAATCAGCTCT+TGG 0.482812 4_3:+61825403 Msa0653660:CDS
CGTGGTATAGTTGTTTGTGC+TGG 0.484168 4_3:+61827695 Msa0653660:CDS
TTTATGAAGTTTGCAAGGAC+TGG 0.487950 4_3:+61827542 Msa0653660:CDS
TAGTCACTTCAACTCGGTTG+GGG 0.490627 4_3:+61825450 Msa0653660:CDS
AATTCTTCAGTCACAGTGGC+AGG 0.491383 4_3:+61824122 Msa0653660:CDS
TTGTCTGTCCTCCTCCATCA+AGG 0.493783 4_3:-61823967 None:intergenic
TTGTTCCAAGTTTCAGATGT+TGG 0.495725 4_3:-61825676 None:intergenic
TTCTGTTGACAACCTAGGAT+TGG 0.496418 4_3:+61825813 Msa0653660:CDS
TAGATGCTGTTGATGCTAGT+TGG 0.511648 4_3:+61827741 Msa0653660:CDS
AAGGTTCATCATATTTAGAA+GGG 0.514547 4_3:+61827666 Msa0653660:CDS
CAAAACCAATGTGGCTTGAG+TGG 0.516596 4_3:-61823914 None:intergenic
ATTTATGCTAAGAAGGATAG+TGG 0.517265 4_3:+61825709 Msa0653660:CDS
CTTGATTTCCAAGTCATCCA+AGG 0.520875 4_3:+61824094 Msa0653660:CDS
GTGGTTCTTATGATGATTGA+AGG 0.521080 4_3:-61823895 None:intergenic
AGAAGGATAGTGGCAAGGCT+TGG 0.526645 4_3:+61825719 Msa0653660:CDS
CAAGCCAGTCCTTTCTCATA+GGG 0.529436 4_3:-61825609 None:intergenic
TGGTATGTTTGCACGGATGA+TGG 0.531015 4_3:-61823793 None:intergenic
AGGCACAGTAACAGATGCTA+GGG 0.531099 4_3:+61827622 Msa0653660:CDS
TTCTTCTCCCTTGATGGAGG+AGG 0.534323 4_3:+61823959 Msa0653660:CDS
TTCATCATCATACAAGAGGC+AGG 0.536972 4_3:+61827599 Msa0653660:CDS
CAGTTCAGATGCATTAGTGT+TGG 0.540345 4_3:-61825320 None:intergenic
TCCTAACTACCCTATGAGAA+AGG 0.540601 4_3:+61825600 Msa0653660:CDS
TATCTCTATTCTAGCTGAAG+AGG 0.543770 4_3:+61825282 Msa0653660:CDS
GAGGCACAGTAACAGATGCT+AGG 0.548507 4_3:+61827621 Msa0653660:CDS
ATGAAACAGTGTTAGCTCAA+AGG 0.550548 4_3:-61827775 None:intergenic
AGATGTTGGAGGAATCAACT+TGG 0.552028 4_3:-61825662 None:intergenic
GATGGACTGGCTCATAGTGT+TGG 0.557460 4_3:+61825886 Msa0653660:CDS
AAAATATGGGATCATGCTGC+TGG 0.560447 4_3:+61827575 Msa0653660:CDS
GATGGAGGAGGACAGACAAA+TGG 0.563044 4_3:+61823971 Msa0653660:CDS
CTCAACTGTTTGGCACAAAG+TGG 0.566181 4_3:-61825836 None:intergenic
GCTTTATCACTCATAGAGGA+TGG 0.566527 4_3:+61825550 Msa0653660:CDS
AATATGTGGCACTAGCTTGT+GGG 0.570610 4_3:+61827507 Msa0653660:CDS
ATCAGCTCTTGGAACTTCAG+AGG 0.572368 4_3:+61825414 Msa0653660:CDS
AGGTGTTTATGAAGTTTGCA+AGG 0.573732 4_3:+61827537 Msa0653660:CDS
TGGCATGATGGATCAGTGGT+TGG 0.576849 4_3:-61825744 None:intergenic
TTATTGGTATTGTAATAAGA+GGG 0.579428 4_3:-61823736 None:intergenic
ACTAGCTTGTGGGGATGCTG+AGG 0.579924 4_3:+61827517 Msa0653660:CDS
TTATTGGCATGATGGATCAG+TGG 0.580390 4_3:-61825748 None:intergenic
ATATTATCTGAATGTTTAAG+GGG 0.582727 4_3:+61825253 Msa0653660:CDS
TAAGAGCATGATGAAATATG+TGG 0.583970 4_3:+61827493 Msa0653660:CDS
TGCTAAGAAGGATAGTGGCA+AGG 0.584190 4_3:+61825714 Msa0653660:CDS
TTCCAAGTTTCAGATGTTGG+AGG 0.584571 4_3:-61825673 None:intergenic
TGCTGTCAGAGCAGTCCAGA+TGG 0.584710 4_3:+61824040 Msa0653660:CDS
TTTGTGCCAAACAGTTGAGA+AGG 0.587281 4_3:+61825840 Msa0653660:CDS
TGGTTACAAAGAGAAAATAT+GGG 0.593622 4_3:+61827562 Msa0653660:CDS
GTTAGCTCAAAGGCTAGAAG+AGG 0.593814 4_3:-61827765 None:intergenic
GTGTCAAAGCAATTGTGAGC+TGG 0.594825 4_3:+61825230 Msa0653660:CDS
CTATTCTTCTCCCTTGATGG+AGG 0.595372 4_3:+61823956 Msa0653660:CDS
TGTCTGTCCTCCTCCATCAA+GGG 0.596724 4_3:-61823966 None:intergenic
AAGAACCACTCAAGCCACAT+TGG 0.597231 4_3:+61823909 Msa0653660:CDS
AAATATGTGGCACTAGCTTG+TGG 0.599637 4_3:+61827506 Msa0653660:CDS
ACATCTGAAACTTGGAACAA+AGG 0.601359 4_3:+61825679 Msa0653660:CDS
AATCATTAGTCACTTCAACT+CGG 0.601408 4_3:+61825444 Msa0653660:CDS
CTCTATTCTAGCTGAAGAGG+AGG 0.606843 4_3:+61825285 Msa0653660:CDS
ACTCATAGAGGATGGAGAAG+TGG 0.616161 4_3:+61825558 Msa0653660:CDS
GAGGATGGAGAAGTGGTGGT+TGG 0.616166 4_3:+61825565 Msa0653660:CDS
TGTAGCTTTATCACTCATAG+AGG 0.619534 4_3:+61825546 Msa0653660:CDS
ATATATGTGGTATGTTTGCA+CGG 0.620727 4_3:-61823800 None:intergenic
CATAGAGGATGGAGAAGTGG+TGG 0.626150 4_3:+61825561 Msa0653660:CDS
GAGGAGGACAGACAAATGGT+TGG 0.631552 4_3:+61823975 Msa0653660:CDS
CCTATGAGAAAGGACTGGCT+TGG 0.633960 4_3:+61825610 Msa0653660:CDS
AGTAACTGAAGTTAAAGCAG+AGG 0.639173 4_3:-61827903 None:intergenic
TGGTTTCATCATCATACAAG+AGG 0.641288 4_3:+61827595 Msa0653660:CDS
TATTTAGAAGGGATTGATCG+TGG 0.644276 4_3:+61827677 Msa0653660:CDS
ATACCACATATATTGAAACA+TGG 0.649185 4_3:+61823810 Msa0653660:CDS
AGTGCCCAAAATCTTCCGGA+AGG 0.664161 4_3:-61825475 None:intergenic
ACTACCCTATGAGAAAGGAC+TGG 0.670981 4_3:+61825605 Msa0653660:CDS
ATATGTGGCACTAGCTTGTG+GGG 0.671425 4_3:+61827508 Msa0653660:CDS
TGAACCTTTAGAGAAATCCA+AGG 0.676390 4_3:-61827651 None:intergenic
ATGCCAATAAGAAGTTTGTG+TGG 0.676415 4_3:+61825761 Msa0653660:CDS
ATTTAGACACAAAACCAATG+TGG 0.687815 4_3:-61823923 None:intergenic
GGCACAGTAACAGATGCTAG+GGG 0.716087 4_3:+61827623 Msa0653660:CDS
TTGCAATTCTTCAGTCACAG+TGG 0.721000 4_3:+61824118 Msa0653660:CDS
ATCATCATACAAGAGGCAGG+AGG 0.725638 4_3:+61827602 Msa0653660:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATAAAAAAAAAATAAAAA+AGG - chr4_3:61824848-61824867 None:intergenic 0.0%
!!! TCTTAAAAACAAAATTTTGA+TGG + chr4_3:61824556-61824575 Msa0653660:intron 15.0%
!! AATATATTGTGTAAAAAACA+AGG + chr4_3:61824742-61824761 Msa0653660:intron 15.0%
!! AAGATAAAATATCAAAATAC+AGG - chr4_3:61825951-61825970 None:intergenic 15.0%
!!! TATTTTGATATTTTATCTTG+TGG + chr4_3:61825952-61825971 Msa0653660:intron 15.0%
!!! ATTTTGATATTTTATCTTGT+GGG + chr4_3:61825953-61825972 Msa0653660:intron 15.0%
!! TAAATACAAATAGAAAACAT+GGG - chr4_3:61826921-61826940 None:intergenic 15.0%
!!! ATGTTAGTTTGATAAAAATA+AGG - chr4_3:61827310-61827329 None:intergenic 15.0%
!! TTATTGGTATTGTAATAAGA+GGG - chr4_3:61823739-61823758 None:intergenic 20.0%
!! ATTCCATATAAATCCATATA+TGG - chr4_3:61824237-61824256 None:intergenic 20.0%
!!! ACAAAATTTTGATGGTAAAA+TGG + chr4_3:61824564-61824583 Msa0653660:intron 20.0%
!! AAAAAATAAAAAAGGCAGTT+CGG - chr4_3:61824840-61824859 None:intergenic 20.0%
!! AATAAGTGGTTAATTACATT+CGG + chr4_3:61824963-61824982 Msa0653660:intron 20.0%
!! TGTCAATATGCTAAATATAT+AGG + chr4_3:61825202-61825221 Msa0653660:intron 20.0%
!! AATATGCTAAATATATAGGT+TGG + chr4_3:61825206-61825225 Msa0653660:intron 20.0%
!! GATATTATCTGAATGTTTAA+GGG + chr4_3:61825252-61825271 Msa0653660:CDS 20.0%
!! ATATTATCTGAATGTTTAAG+GGG + chr4_3:61825253-61825272 Msa0653660:CDS 20.0%
!!! TTTTGATATTTTATCTTGTG+GGG + chr4_3:61825954-61825973 Msa0653660:intron 20.0%
!! CTAAATACAAATAGAAAACA+TGG - chr4_3:61826922-61826941 None:intergenic 20.0%
!! AAAGACTATAATTCTGTTAT+CGG - chr4_3:61827416-61827435 None:intergenic 20.0%
!! ATTACATAATACATGTAGAT+AGG - chr4_3:61827810-61827829 None:intergenic 20.0%
!!! TGTGTATTGTTTGAAATATA+TGG + chr4_3:61827963-61827982 Msa0653660:three_prime_UTR 20.0%
! ATAAGAGGGAATAGAAAATT+GGG - chr4_3:61823725-61823744 None:intergenic 25.0%
! AATAAGAGGGAATAGAAAAT+TGG - chr4_3:61823726-61823745 None:intergenic 25.0%
! GTTATTGGTATTGTAATAAG+AGG - chr4_3:61823740-61823759 None:intergenic 25.0%
! ATACCACATATATTGAAACA+TGG + chr4_3:61823810-61823829 Msa0653660:CDS 25.0%
! TTTCCATGTTTCAATATATG+TGG - chr4_3:61823816-61823835 None:intergenic 25.0%
!!! AACTTGTTTTTGCTTCTATA+TGG - chr4_3:61823863-61823882 None:intergenic 25.0%
!! ACTTTTATCTTAGCCATATA+TGG + chr4_3:61824221-61824240 Msa0653660:intron 25.0%
! TAGCCATATATGGATTTATA+TGG + chr4_3:61824231-61824250 Msa0653660:intron 25.0%
! TTATTATGAAGTGACAAAAG+AGG + chr4_3:61824407-61824426 Msa0653660:intron 25.0%
!! AAACATTTTCTGATACAAAC+AGG + chr4_3:61824435-61824454 Msa0653660:intron 25.0%
! AAAGTCAATGAAAAACTGTT+TGG + chr4_3:61824498-61824517 Msa0653660:intron 25.0%
! GAAAAGTGACTGTTATATAA+AGG + chr4_3:61824524-61824543 Msa0653660:intron 25.0%
! AATGGAAAATGATAAAGACT+TGG + chr4_3:61824582-61824601 Msa0653660:intron 25.0%
!! CTTGATAGAGTATTTAAGTT+TGG + chr4_3:61824645-61824664 Msa0653660:intron 25.0%
! TTACACAATATATTGTTTCC+AGG - chr4_3:61824736-61824755 None:intergenic 25.0%
!! AATGTTTATGTTAGTTTCCA+AGG + chr4_3:61825025-61825044 Msa0653660:intron 25.0%
! GGATATTATCTGAATGTTTA+AGG + chr4_3:61825251-61825270 Msa0653660:CDS 25.0%
! TTGTGTAATTTATGCTAAGA+AGG + chr4_3:61825702-61825721 Msa0653660:CDS 25.0%
! CTATTTGTATTTAGTCAACA+AGG + chr4_3:61826928-61826947 Msa0653660:intron 25.0%
! AATTAATTGATAAAGCTTCG+CGG - chr4_3:61827068-61827087 None:intergenic 25.0%
! TAATATGCAAGCAAATTCTA+TGG + chr4_3:61827088-61827107 Msa0653660:intron 25.0%
!!! TTCAAAAGATTTTCAAGTAC+CGG - chr4_3:61827141-61827160 None:intergenic 25.0%
!!! TCGGAACTATATTATTTTTG+CGG - chr4_3:61827397-61827416 None:intergenic 25.0%
! TGGTTACAAAGAGAAAATAT+GGG + chr4_3:61827562-61827581 Msa0653660:CDS 25.0%
! AAAGGTTCATCATATTTAGA+AGG + chr4_3:61827665-61827684 Msa0653660:CDS 25.0%
! AAGGTTCATCATATTTAGAA+GGG + chr4_3:61827666-61827685 Msa0653660:CDS 25.0%
!! ATTTTCTGTTTTACTTGACA+CGG + chr4_3:61827867-61827886 Msa0653660:three_prime_UTR 25.0%
AGTAGAGTACAACAAGTTAT+TGG - chr4_3:61823755-61823774 None:intergenic 30.0%
ATATATGTGGTATGTTTGCA+CGG - chr4_3:61823803-61823822 None:intergenic 30.0%
ATTTAGACACAAAACCAATG+TGG - chr4_3:61823926-61823945 None:intergenic 30.0%
AGAGAAATATTCCCAAGAAT+TGG + chr4_3:61824013-61824032 Msa0653660:CDS 30.0%
GTGTTAGATTGCAATAACTT+TGG + chr4_3:61824272-61824291 Msa0653660:CDS 30.0%
TCAAGTCAAATTATGACAAG+TGG + chr4_3:61824374-61824393 Msa0653660:intron 30.0%
ATTGTCTAGTCCATATTGAT+CGG + chr4_3:61824613-61824632 Msa0653660:intron 30.0%
GTACAATACACCAAAATAGT+GGG + chr4_3:61824774-61824793 Msa0653660:intron 30.0%
GCTAACACACTTTAAATAAG+TGG + chr4_3:61824949-61824968 Msa0653660:intron 30.0%
AATCATTAGTCACTTCAACT+CGG + chr4_3:61825444-61825463 Msa0653660:CDS 30.0%
GTTATCAGCAAAGTTATCAT+AGG + chr4_3:61825632-61825651 Msa0653660:CDS 30.0%
ATTTATGCTAAGAAGGATAG+TGG + chr4_3:61825709-61825728 Msa0653660:CDS 30.0%
! ATTTTATCTTGTGGGGTTAT+AGG + chr4_3:61825961-61825980 Msa0653660:intron 30.0%
! AACAAGATGCATCTTCTTTT+CGG - chr4_3:61826177-61826196 None:intergenic 30.0%
AAGATGCATCTTGTTGATAT+GGG + chr4_3:61826182-61826201 Msa0653660:intron 30.0%
GAAGGCTTATAAGAATTGTT+AGG - chr4_3:61826213-61826232 None:intergenic 30.0%
! AACAAGATGCATCTTCTTTT+CGG - chr4_3:61826177-61826196 None:intergenic 30.0%
AAGATGCATCTTGTTGATAT+GGG + chr4_3:61826182-61826201 Msa0653660:intron 30.0%
GAAGGCTTATAAGAATTGTT+AGG - chr4_3:61826213-61826232 None:intergenic 30.0%
TTTAAATTCCATTCGTGTTG+CGG + chr4_3:61826952-61826971 Msa0653660:intron 30.0%
! TAAGAGCATGATGAAATATG+TGG + chr4_3:61827493-61827512 Msa0653660:CDS 30.0%
CTGGTTACAAAGAGAAAATA+TGG + chr4_3:61827561-61827580 Msa0653660:CDS 30.0%
! TATGATCTTTTCATGCAATG+TGG - chr4_3:61827723-61827742 None:intergenic 30.0%
AGGGAATAGAAAATTGGGAT+TGG - chr4_3:61823720-61823739 None:intergenic 35.0%
GTGGTTCTTATGATGATTGA+AGG - chr4_3:61823898-61823917 None:intergenic 35.0%
AAACTATTCTTCTCCCTTGA+TGG + chr4_3:61823953-61823972 Msa0653660:CDS 35.0%
AATTATGACAAGTGGCTTCT+TGG + chr4_3:61824382-61824401 Msa0653660:intron 35.0%
CTGTTATATAAAGGCTTCAG+AGG + chr4_3:61824533-61824552 Msa0653660:intron 35.0%
CGTACAATACACCAAAATAG+TGG + chr4_3:61824773-61824792 Msa0653660:intron 35.0%
CTTTGCTACAACGATTTAAG+TGG + chr4_3:61824927-61824946 Msa0653660:intron 35.0%
ACATCTACTGATCAGTCTAT+TGG + chr4_3:61825119-61825138 Msa0653660:intron 35.0%
! TATCTCTATTCTAGCTGAAG+AGG + chr4_3:61825282-61825301 Msa0653660:CDS 35.0%
GGCAAAATGGGATTTGTAAA+TGG + chr4_3:61825511-61825530 Msa0653660:CDS 35.0%
!! TGTAGCTTTATCACTCATAG+AGG + chr4_3:61825546-61825565 Msa0653660:CDS 35.0%
TTGTTCCAAGTTTCAGATGT+TGG - chr4_3:61825679-61825698 None:intergenic 35.0%
! ACATCTGAAACTTGGAACAA+AGG + chr4_3:61825679-61825698 Msa0653660:CDS 35.0%
CAAACTTCTTATTGGCATGA+TGG - chr4_3:61825759-61825778 None:intergenic 35.0%
ATGCCAATAAGAAGTTTGTG+TGG + chr4_3:61825761-61825780 Msa0653660:CDS 35.0%
!!! GAAACTTGTTTTGCATGGTT+TGG - chr4_3:61825787-61825806 None:intergenic 35.0%
!!! ACAGAGAAACTTGTTTTGCA+TGG - chr4_3:61825792-61825811 None:intergenic 35.0%
!! AATTAGCCTTCTCAACTGTT+TGG - chr4_3:61825849-61825868 None:intergenic 35.0%
! TCAAGTCACTCTTTTACTGA+TGG + chr4_3:61825868-61825887 Msa0653660:CDS 35.0%
GAAGATGCATCTTGTTGATA+TGG + chr4_3:61826181-61826200 Msa0653660:intron 35.0%
GAAGATGCATCTTGTTGATA+TGG + chr4_3:61826181-61826200 Msa0653660:intron 35.0%
! ACATAGGAATAATCCCCTTT+TGG - chr4_3:61826890-61826909 None:intergenic 35.0%
AAAAGGGGATTATTCCTATG+TGG + chr4_3:61826889-61826908 Msa0653660:intron 35.0%
AACATGGGAATAATCCACAT+AGG - chr4_3:61826906-61826925 None:intergenic 35.0%
TGCAATTCTTGACTGTATCA+AGG - chr4_3:61826979-61826998 None:intergenic 35.0%
ATCAAATATGACCTCAATCG+TGG + chr4_3:61826999-61827018 Msa0653660:intron 35.0%
TCACAGAGACATAAAAACCT+TGG + chr4_3:61827022-61827041 Msa0653660:intron 35.0%
TATGCAAGCAAATTCTATGG+TGG + chr4_3:61827091-61827110 Msa0653660:intron 35.0%
TCTTCTCAATCACAATGATG+AGG + chr4_3:61827341-61827360 Msa0653660:intron 35.0%
TGGTTTATTGCTGCATACAA+CGG - chr4_3:61827465-61827484 None:intergenic 35.0%
GTATGCAGCAATAAACCATT+AGG + chr4_3:61827467-61827486 Msa0653660:intron 35.0%
ATCATGCTCTTAACTCCTAA+TGG - chr4_3:61827485-61827504 None:intergenic 35.0%
AGGTGTTTATGAAGTTTGCA+AGG + chr4_3:61827537-61827556 Msa0653660:CDS 35.0%
TTTATGAAGTTTGCAAGGAC+TGG + chr4_3:61827542-61827561 Msa0653660:CDS 35.0%
TGGTTTCATCATCATACAAG+AGG + chr4_3:61827595-61827614 Msa0653660:CDS 35.0%
AGTTCCTTGGATTTCTCTAA+AGG + chr4_3:61827647-61827666 Msa0653660:CDS 35.0%
! TGAACCTTTAGAGAAATCCA+AGG - chr4_3:61827654-61827673 None:intergenic 35.0%
TATTTAGAAGGGATTGATCG+TGG + chr4_3:61827677-61827696 Msa0653660:CDS 35.0%
ATGAAACAGTGTTAGCTCAA+AGG - chr4_3:61827778-61827797 None:intergenic 35.0%
AGTAACTGAAGTTAAAGCAG+AGG - chr4_3:61827906-61827925 None:intergenic 35.0%
GACAGCAACATCCAATTCTT+GGG - chr4_3:61824027-61824046 None:intergenic 40.0%
TGACAGCAACATCCAATTCT+TGG - chr4_3:61824028-61824047 None:intergenic 40.0%
! CTTGGATGACTTGGAAATCA+AGG - chr4_3:61824096-61824115 None:intergenic 40.0%
CTTGATTTCCAAGTCATCCA+AGG + chr4_3:61824094-61824113 Msa0653660:CDS 40.0%
ATTGCAATCCTTGGATGACT+TGG - chr4_3:61824105-61824124 None:intergenic 40.0%
GACTGAAGAATTGCAATCCT+TGG - chr4_3:61824114-61824133 None:intergenic 40.0%
TTGCAATTCTTCAGTCACAG+TGG + chr4_3:61824118-61824137 Msa0653660:CDS 40.0%
GTCTACTGTCCTGTAAGAAT+TGG + chr4_3:61824303-61824322 Msa0653660:intron 40.0%
CAGCAACATCCAATTCTTAC+AGG - chr4_3:61824315-61824334 None:intergenic 40.0%
GACTTGATACCAAAGCAACT+TGG - chr4_3:61824361-61824380 None:intergenic 40.0%
GCTTCTCATACCGATCAATA+TGG - chr4_3:61824626-61824645 None:intergenic 40.0%
TCATATGAACGCTTGTGCAT+CGG + chr4_3:61824668-61824687 Msa0653660:intron 40.0%
ACTAAAGCTTCCACATACAC+AGG - chr4_3:61824814-61824833 None:intergenic 40.0%
GGTATATGCTTCATTAACCG+AGG + chr4_3:61824984-61825003 Msa0653660:intron 40.0%
TATGCTTCATTAACCGAGGT+TGG + chr4_3:61824988-61825007 Msa0653660:intron 40.0%
! GAGGTCTAGGATTTAAACCT+TGG - chr4_3:61825045-61825064 None:intergenic 40.0%
CCTCGTGCTTAAAACTCTTT+CGG + chr4_3:61825061-61825080 Msa0653660:intron 40.0%
AGATGTTCCAAGTAGTAGCT+CGG - chr4_3:61825105-61825124 None:intergenic 40.0%
CAGTTCAGATGCATTAGTGT+TGG - chr4_3:61825323-61825342 None:intergenic 40.0%
!! GAAGTTCCAAGAGCTGATTT+TGG - chr4_3:61825412-61825431 None:intergenic 40.0%
ATTAGTCACTTCAACTCGGT+TGG + chr4_3:61825448-61825467 Msa0653660:CDS 40.0%
TTAGTCACTTCAACTCGGTT+GGG + chr4_3:61825449-61825468 Msa0653660:CDS 40.0%
ACTTAGTGCCCAAAATCTTC+CGG - chr4_3:61825482-61825501 None:intergenic 40.0%
! AAGTCCTCTTGATGGCAAAA+TGG + chr4_3:61825498-61825517 Msa0653660:CDS 40.0%
! AGTCCTCTTGATGGCAAAAT+GGG + chr4_3:61825499-61825518 Msa0653660:CDS 40.0%
! AATCCCATTTTGCCATCAAG+AGG - chr4_3:61825505-61825524 None:intergenic 40.0%
GCTTTATCACTCATAGAGGA+TGG + chr4_3:61825550-61825569 Msa0653660:CDS 40.0%
TCCTAACTACCCTATGAGAA+AGG + chr4_3:61825600-61825619 Msa0653660:CDS 40.0%
TCCTTTCTCATAGGGTAGTT+AGG - chr4_3:61825604-61825623 None:intergenic 40.0%
AGATGTTGGAGGAATCAACT+TGG - chr4_3:61825665-61825684 None:intergenic 40.0%
! TTCCTCCAACATCTGAAACT+TGG + chr4_3:61825671-61825690 Msa0653660:CDS 40.0%
TTCCAAGTTTCAGATGTTGG+AGG - chr4_3:61825676-61825695 None:intergenic 40.0%
!! TTATTGGCATGATGGATCAG+TGG - chr4_3:61825751-61825770 None:intergenic 40.0%
TGGCCACACAAACTTCTTAT+TGG - chr4_3:61825767-61825786 None:intergenic 40.0%
TTCTGTTGACAACCTAGGAT+TGG + chr4_3:61825813-61825832 Msa0653660:CDS 40.0%
TTTGTGCCAAACAGTTGAGA+AGG + chr4_3:61825840-61825859 Msa0653660:CDS 40.0%
!! TCACTCTTTTACTGATGGAC+TGG + chr4_3:61825873-61825892 Msa0653660:CDS 40.0%
!! AAAGACTCGTGTTGGTTTGT+GGG - chr4_3:61826038-61826057 None:intergenic 40.0%
!! AAAAGACTCGTGTTGGTTTG+TGG - chr4_3:61826039-61826058 None:intergenic 40.0%
! ACTTGGAGTAGTCTTAGGAT+GGG - chr4_3:61826115-61826134 None:intergenic 40.0%
GCTTAACTGTGGAGTTCTTA+TGG + chr4_3:61826142-61826161 Msa0653660:intron 40.0%
TAAGAGGAACCGAATCACAT+CGG - chr4_3:61826285-61826304 None:intergenic 40.0%
TTCGGTTCCTCTTATTAACG+TGG + chr4_3:61826291-61826310 Msa0653660:intron 40.0%
TCGGTTCCTCTTATTAACGT+GGG + chr4_3:61826292-61826311 Msa0653660:intron 40.0%
!! AAAGACTCGTGTTGGTTTGT+GGG - chr4_3:61826038-61826057 None:intergenic 40.0%
!! AAAAGACTCGTGTTGGTTTG+TGG - chr4_3:61826039-61826058 None:intergenic 40.0%
! ACTTGGAGTAGTCTTAGGAT+GGG - chr4_3:61826115-61826134 None:intergenic 40.0%
GCTTAACTGTGGAGTTCTTA+TGG + chr4_3:61826142-61826161 Msa0653660:intron 40.0%
TAAGAGGAACCGAATCACAT+CGG - chr4_3:61826285-61826304 None:intergenic 40.0%
TTCGGTTCCTCTTATTAACG+TGG + chr4_3:61826291-61826310 Msa0653660:intron 40.0%
TCGGTTCCTCTTATTAACGT+GGG + chr4_3:61826292-61826311 Msa0653660:intron 40.0%
! TGGGTGTTACACATTCCAAA+AGG + chr4_3:61826872-61826891 Msa0653660:intron 40.0%
! GGGTGTTACACATTCCAAAA+GGG + chr4_3:61826873-61826892 Msa0653660:intron 40.0%
! GGTGTTACACATTCCAAAAG+GGG + chr4_3:61826874-61826893 Msa0653660:intron 40.0%
CAATCTGAGCTACAATACCA+AGG - chr4_3:61827042-61827061 None:intergenic 40.0%
TGGTATTGTAGCTCAGATTG+TGG + chr4_3:61827042-61827061 Msa0653660:intron 40.0%
TTGTGGATCACCTATCAAAG+TGG - chr4_3:61827118-61827137 None:intergenic 40.0%
TTTGATAGGTGATCCACAAC+CGG + chr4_3:61827119-61827138 Msa0653660:intron 40.0%
!!! AGATTTTCAAGTACCGGTTG+TGG - chr4_3:61827135-61827154 None:intergenic 40.0%
TCTCAACTGTGAAAACGTGA+AGG - chr4_3:61827210-61827229 None:intergenic 40.0%
!!! ATTATTTTTGCGGCGACCTT+TGG - chr4_3:61827387-61827406 None:intergenic 40.0%
! AAATATGTGGCACTAGCTTG+TGG + chr4_3:61827506-61827525 Msa0653660:CDS 40.0%
! AATATGTGGCACTAGCTTGT+GGG + chr4_3:61827507-61827526 Msa0653660:CDS 40.0%
AAAATATGGGATCATGCTGC+TGG + chr4_3:61827575-61827594 Msa0653660:CDS 40.0%
TTCATCATCATACAAGAGGC+AGG + chr4_3:61827599-61827618 Msa0653660:CDS 40.0%
TAGATGCTGTTGATGCTAGT+TGG + chr4_3:61827741-61827760 Msa0653660:CDS 40.0%
AGATGCTGTTGATGCTAGTT+GGG + chr4_3:61827742-61827761 Msa0653660:CDS 40.0%
TGGTATGTTTGCACGGATGA+TGG - chr4_3:61823796-61823815 None:intergenic 45.0%
AAGAACCACTCAAGCCACAT+TGG + chr4_3:61823909-61823928 Msa0653660:CDS 45.0%
CAAAACCAATGTGGCTTGAG+TGG - chr4_3:61823917-61823936 None:intergenic 45.0%
CTATTCTTCTCCCTTGATGG+AGG + chr4_3:61823956-61823975 Msa0653660:CDS 45.0%
AATTCTTCAGTCACAGTGGC+AGG + chr4_3:61824122-61824141 Msa0653660:CDS 45.0%
CATACACAGGATTCGGGAAA+GGG - chr4_3:61824801-61824820 None:intergenic 45.0%
ACATACACAGGATTCGGGAA+AGG - chr4_3:61824802-61824821 None:intergenic 45.0%
TTTCCCGAATCCTGTGTATG+TGG + chr4_3:61824801-61824820 Msa0653660:intron 45.0%
CTTCCACATACACAGGATTC+GGG - chr4_3:61824807-61824826 None:intergenic 45.0%
GCTTCCACATACACAGGATT+CGG - chr4_3:61824808-61824827 None:intergenic 45.0%
!!! ACCGAGGTTGGTCTTTTTGT+AGG + chr4_3:61825000-61825019 Msa0653660:intron 45.0%
GCCTACAAAAAGACCAACCT+CGG - chr4_3:61825004-61825023 None:intergenic 45.0%
!!! GAGTTTTAAGCACGAGGTCT+AGG - chr4_3:61825058-61825077 None:intergenic 45.0%
!!! CCGAAAGAGTTTTAAGCACG+AGG - chr4_3:61825064-61825083 None:intergenic 45.0%
GTGTCAAAGCAATTGTGAGC+TGG + chr4_3:61825230-61825249 Msa0653660:CDS 45.0%
! CTCTATTCTAGCTGAAGAGG+AGG + chr4_3:61825285-61825304 Msa0653660:CDS 45.0%
! CTAGCTGAAGCACCTCTATT+TGG + chr4_3:61825376-61825395 Msa0653660:CDS 45.0%
GGTGCTTCAACTCCAAATAG+AGG - chr4_3:61825391-61825410 None:intergenic 45.0%
! GAAGCACCAAAATCAGCTCT+TGG + chr4_3:61825403-61825422 Msa0653660:CDS 45.0%
ATCAGCTCTTGGAACTTCAG+AGG + chr4_3:61825414-61825433 Msa0653660:CDS 45.0%
TAGTCACTTCAACTCGGTTG+GGG + chr4_3:61825450-61825469 Msa0653660:CDS 45.0%
! GGTTCCTTCCGGAAGATTTT+GGG + chr4_3:61825471-61825490 Msa0653660:CDS 45.0%
ACTCATAGAGGATGGAGAAG+TGG + chr4_3:61825558-61825577 Msa0653660:CDS 45.0%
! AAGTGGTGGTTGGTGTTCTT+GGG + chr4_3:61825575-61825594 Msa0653660:CDS 45.0%
ACTACCCTATGAGAAAGGAC+TGG + chr4_3:61825605-61825624 Msa0653660:CDS 45.0%
CAAGCCAGTCCTTTCTCATA+GGG - chr4_3:61825612-61825631 None:intergenic 45.0%
! TGCTAAGAAGGATAGTGGCA+AGG + chr4_3:61825714-61825733 Msa0653660:CDS 45.0%
CTGTCTTCTGTTGACAACCT+AGG + chr4_3:61825808-61825827 Msa0653660:CDS 45.0%
CTCAACTGTTTGGCACAAAG+TGG - chr4_3:61825839-61825858 None:intergenic 45.0%
!! TGGCTCATAGTGTTGGTTTC+AGG + chr4_3:61825893-61825912 Msa0653660:CDS 45.0%
TAACATCCCAGACTGCTTTC+AGG + chr4_3:61825999-61826018 Msa0653660:intron 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG - chr4_3:61826029-61826048 None:intergenic 45.0%
!! AAGACTCGTGTTGGTTTGTG+GGG - chr4_3:61826037-61826056 None:intergenic 45.0%
! GACTTGGAGTAGTCTTAGGA+TGG - chr4_3:61826116-61826135 None:intergenic 45.0%
!! GCTTGACTTGGAGTAGTCTT+AGG - chr4_3:61826120-61826139 None:intergenic 45.0%
ACAGTTAAGCGTGCTTGACT+TGG - chr4_3:61826132-61826151 None:intergenic 45.0%
AAGTCAAGCACGCTTAACTG+TGG + chr4_3:61826131-61826150 Msa0653660:intron 45.0%
GTATGGGACTACATGGTTGA+AGG - chr4_3:61826235-61826254 None:intergenic 45.0%
CATGTAGTCCCATACCTACA+CGG + chr4_3:61826240-61826259 Msa0653660:intron 45.0%
CGAATCACATCGGAATGAGA+GGG - chr4_3:61826275-61826294 None:intergenic 45.0%
CCTCTCATTCCGATGTGATT+CGG + chr4_3:61826273-61826292 Msa0653660:intron 45.0%
CGGTTCCTCTTATTAACGTG+GGG + chr4_3:61826293-61826312 Msa0653660:intron 45.0%
GATGACCCCACGTTAATAAG+AGG - chr4_3:61826301-61826320 None:intergenic 45.0%
TTAACGTGGGGTCATCCTTA+CGG + chr4_3:61826305-61826324 Msa0653660:intron 45.0%
AACCTTTCGTATCCAACTGG+CGG + chr4_3:61826352-61826371 Msa0653660:intron 45.0%
GATATCGAAAGCCACGTTGT+GGG + chr4_3:61826375-61826394 Msa0653660:intron 45.0%
! GCAGTCTGGGATGTTACAAA+TGG - chr4_3:61826473-61826492 None:intergenic 45.0%
TAACATCCCAGACTGCTTTC+AGG + chr4_3:61825999-61826018 Msa0653660:intron 45.0%
!! TGTTGGTTTGTGGGGTTAGT+CGG - chr4_3:61826029-61826048 None:intergenic 45.0%
!! AAGACTCGTGTTGGTTTGTG+GGG - chr4_3:61826037-61826056 None:intergenic 45.0%
! GACTTGGAGTAGTCTTAGGA+TGG - chr4_3:61826116-61826135 None:intergenic 45.0%
!! GCTTGACTTGGAGTAGTCTT+AGG - chr4_3:61826120-61826139 None:intergenic 45.0%
ACAGTTAAGCGTGCTTGACT+TGG - chr4_3:61826132-61826151 None:intergenic 45.0%
AAGTCAAGCACGCTTAACTG+TGG + chr4_3:61826131-61826150 Msa0653660:intron 45.0%
GTATGGGACTACATGGTTGA+AGG - chr4_3:61826235-61826254 None:intergenic 45.0%
CATGTAGTCCCATACCTACA+CGG + chr4_3:61826240-61826259 Msa0653660:intron 45.0%
CGAATCACATCGGAATGAGA+GGG - chr4_3:61826275-61826294 None:intergenic 45.0%
CCTCTCATTCCGATGTGATT+CGG + chr4_3:61826273-61826292 Msa0653660:intron 45.0%
CGGTTCCTCTTATTAACGTG+GGG + chr4_3:61826293-61826312 Msa0653660:intron 45.0%
GATGACCCCACGTTAATAAG+AGG - chr4_3:61826301-61826320 None:intergenic 45.0%
TTAACGTGGGGTCATCCTTA+CGG + chr4_3:61826305-61826324 Msa0653660:intron 45.0%
AACCTTTCGTATCCAACTGG+CGG + chr4_3:61826352-61826371 Msa0653660:intron 45.0%
GATATCGAAAGCCACGTTGT+GGG + chr4_3:61826375-61826394 Msa0653660:intron 45.0%
AATGTGTAACACCCACAACG+TGG - chr4_3:61826867-61826886 None:intergenic 45.0%
!! CTATGGTGGACCACTTTGAT+AGG + chr4_3:61827105-61827124 Msa0653660:intron 45.0%
ATGCGACAGATGTTGTCTTC+TGG + chr4_3:61827167-61827186 Msa0653660:intron 45.0%
! CTTCTGGAAGTAGAAGCTCA+CGG + chr4_3:61827183-61827202 Msa0653660:intron 45.0%
! CCTTTGGAAGTAGAAGCTCA+TGG - chr4_3:61827371-61827390 None:intergenic 45.0%
CCATGAGCTTCTACTTCCAA+AGG + chr4_3:61827368-61827387 Msa0653660:intron 45.0%
! ATATGTGGCACTAGCTTGTG+GGG + chr4_3:61827508-61827527 Msa0653660:CDS 45.0%
ATCATCATACAAGAGGCAGG+AGG + chr4_3:61827602-61827621 Msa0653660:CDS 45.0%
AGGCACAGTAACAGATGCTA+GGG + chr4_3:61827622-61827641 Msa0653660:CDS 45.0%
CGTGGTATAGTTGTTTGTGC+TGG + chr4_3:61827695-61827714 Msa0653660:CDS 45.0%
GTTAGCTCAAAGGCTAGAAG+AGG - chr4_3:61827768-61827787 None:intergenic 45.0%
TTCTTCTCCCTTGATGGAGG+AGG + chr4_3:61823959-61823978 Msa0653660:CDS 50.0%
TGTCTGTCCTCCTCCATCAA+GGG - chr4_3:61823969-61823988 None:intergenic 50.0%
TTGTCTGTCCTCCTCCATCA+AGG - chr4_3:61823970-61823989 None:intergenic 50.0%
GATGGAGGAGGACAGACAAA+TGG + chr4_3:61823971-61823990 Msa0653660:CDS 50.0%
GAGGAGGACAGACAAATGGT+TGG + chr4_3:61823975-61823994 Msa0653660:CDS 50.0%
GACATAGAGAGCAAGCCATC+TGG - chr4_3:61824058-61824077 None:intergenic 50.0%
CCAAAGCAACTTGGCACAAG+TGG - chr4_3:61824352-61824371 None:intergenic 50.0%
CCACTTGTGCCAAGTTGCTT+TGG + chr4_3:61824349-61824368 Msa0653660:intron 50.0%
TCCCGTGACTGAAAAAGTCG+CGG + chr4_3:61824702-61824721 Msa0653660:intron 50.0%
!!! ACCCGCGACTTTTTCAGTCA+CGG - chr4_3:61824707-61824726 None:intergenic 50.0%
AAAGTCGCGGGTTTAAGTCC+TGG + chr4_3:61824715-61824734 Msa0653660:intron 50.0%
! GGGAAAGGGTCCCACTATTT+TGG - chr4_3:61824787-61824806 None:intergenic 50.0%
TCACCAACCGAGCTACTACT+TGG + chr4_3:61825095-61825114 Msa0653660:intron 50.0%
GTTCCAAGTAGTAGCTCGGT+TGG - chr4_3:61825101-61825120 None:intergenic 50.0%
! GGGTTCCTTCCGGAAGATTT+TGG + chr4_3:61825470-61825489 Msa0653660:CDS 50.0%
AGTGCCCAAAATCTTCCGGA+AGG - chr4_3:61825478-61825497 None:intergenic 50.0%
TGGGCACTAAGTCCTCTTGA+TGG + chr4_3:61825490-61825509 Msa0653660:CDS 50.0%
CATAGAGGATGGAGAAGTGG+TGG + chr4_3:61825561-61825580 Msa0653660:CDS 50.0%
! GAAGTGGTGGTTGGTGTTCT+TGG + chr4_3:61825574-61825593 Msa0653660:CDS 50.0%
CCAAGCCAGTCCTTTCTCAT+AGG - chr4_3:61825613-61825632 None:intergenic 50.0%
!! CCTATGAGAAAGGACTGGCT+TGG + chr4_3:61825610-61825629 Msa0653660:CDS 50.0%
! AGAAGGATAGTGGCAAGGCT+TGG + chr4_3:61825719-61825738 Msa0653660:CDS 50.0%
!! TGGCATGATGGATCAGTGGT+TGG - chr4_3:61825747-61825766 None:intergenic 50.0%
!! GATGGACTGGCTCATAGTGT+TGG + chr4_3:61825886-61825905 Msa0653660:CDS 50.0%
GGCAATCCTGAAAGCAGTCT+GGG - chr4_3:61826008-61826027 None:intergenic 50.0%
CACGCTGAAAAGACTCGTGT+TGG - chr4_3:61826046-61826065 None:intergenic 50.0%
TCTTAGGATGGGTGACCTTC+CGG - chr4_3:61826104-61826123 None:intergenic 50.0%
GGGACTACATGGTTGAAGGA+AGG - chr4_3:61826231-61826250 None:intergenic 50.0%
CGTGTAGGTATGGGACTACA+TGG - chr4_3:61826242-61826261 None:intergenic 50.0%
CCGAATCACATCGGAATGAG+AGG - chr4_3:61826276-61826295 None:intergenic 50.0%
GGGAACCTTTCGTATCCAAC+TGG + chr4_3:61826349-61826368 Msa0653660:intron 50.0%
ACCTTTCGTATCCAACTGGC+GGG + chr4_3:61826353-61826372 Msa0653660:intron 50.0%
GGATATCGAAAGCCACGTTG+TGG + chr4_3:61826374-61826393 Msa0653660:intron 50.0%
GGCAATCCTGAAAGCAGTCT+GGG - chr4_3:61826008-61826027 None:intergenic 50.0%
CACGCTGAAAAGACTCGTGT+TGG - chr4_3:61826046-61826065 None:intergenic 50.0%
TCTTAGGATGGGTGACCTTC+CGG - chr4_3:61826104-61826123 None:intergenic 50.0%
GGGACTACATGGTTGAAGGA+AGG - chr4_3:61826231-61826250 None:intergenic 50.0%
CGTGTAGGTATGGGACTACA+TGG - chr4_3:61826242-61826261 None:intergenic 50.0%
CCGAATCACATCGGAATGAG+AGG - chr4_3:61826276-61826295 None:intergenic 50.0%
GGGAACCTTTCGTATCCAAC+TGG + chr4_3:61826349-61826368 Msa0653660:intron 50.0%
ACCTTTCGTATCCAACTGGC+GGG + chr4_3:61826353-61826372 Msa0653660:intron 50.0%
GGATATCGAAAGCCACGTTG+TGG + chr4_3:61826374-61826393 Msa0653660:intron 50.0%
ATCAAGGACCGCAACACGAA+TGG - chr4_3:61826963-61826982 None:intergenic 50.0%
TGTCTCTGTGACCACGATTG+AGG - chr4_3:61827013-61827032 None:intergenic 50.0%
GAGGCACAGTAACAGATGCT+AGG + chr4_3:61827621-61827640 Msa0653660:CDS 50.0%
GGCACAGTAACAGATGCTAG+GGG + chr4_3:61827623-61827642 Msa0653660:CDS 50.0%
TGCTGTCAGAGCAGTCCAGA+TGG + chr4_3:61824040-61824059 Msa0653660:CDS 55.0%
!!! CCCGCGACTTTTTCAGTCAC+GGG - chr4_3:61824706-61824725 None:intergenic 55.0%
CCCGTGACTGAAAAAGTCGC+GGG + chr4_3:61824703-61824722 Msa0653660:intron 55.0%
AACTCGGTTGGGGTTCCTTC+CGG + chr4_3:61825460-61825479 Msa0653660:CDS 55.0%
GAGGATGGAGAAGTGGTGGT+TGG + chr4_3:61825565-61825584 Msa0653660:CDS 55.0%
GGCACAAAGTGGCCAATCCT+AGG - chr4_3:61825828-61825847 None:intergenic 55.0%
CGGCAATCCTGAAAGCAGTC+TGG - chr4_3:61826009-61826028 None:intergenic 55.0%
GTCCTCACTCACACGCTTTC+CGG + chr4_3:61826070-61826089 Msa0653660:intron 55.0%
TCCTCACTCACACGCTTTCC+GGG + chr4_3:61826071-61826090 Msa0653660:intron 55.0%
ACGCTTTCCGGGAAACTTCC+CGG + chr4_3:61826082-61826101 Msa0653660:intron 55.0%
TTTCCGGGAAACTTCCCGGA+AGG + chr4_3:61826086-61826105 Msa0653660:intron 55.0%
TGACCTTCCGGGAAGTTTCC+CGG - chr4_3:61826092-61826111 None:intergenic 55.0%
CTTAGGATGGGTGACCTTCC+GGG - chr4_3:61826103-61826122 None:intergenic 55.0%
TCCAGAGGCCGTGTAGGTAT+GGG - chr4_3:61826251-61826270 None:intergenic 55.0%
ATCCAGAGGCCGTGTAGGTA+TGG - chr4_3:61826252-61826271 None:intergenic 55.0%
TCGGAATGAGAGGGATCCAG+AGG - chr4_3:61826266-61826285 None:intergenic 55.0%
TGGAACGGGCACTATCCGTA+AGG - chr4_3:61826323-61826342 None:intergenic 55.0%
ATAGTGCCCGTTCCAACTGG+CGG + chr4_3:61826328-61826347 Msa0653660:intron 55.0%
AAGGTTCCCGCCAGTTGGAA+CGG - chr4_3:61826338-61826357 None:intergenic 55.0%
TACGAAAGGTTCCCGCCAGT+TGG - chr4_3:61826343-61826362 None:intergenic 55.0%
TCCCGCCAGTTGGATACGAA+AGG - chr4_3:61826357-61826376 None:intergenic 55.0%
GCTTTCGATATCCCGCCAGT+TGG - chr4_3:61826367-61826386 None:intergenic 55.0%
GGCATGTAACACCCACAACG+TGG - chr4_3:61826389-61826408 None:intergenic 55.0%
TCTCCCAGTACGGTGTGGTT+CGG - chr4_3:61826436-61826455 None:intergenic 55.0%
AGAGCAGACCTCTCCCAGTA+CGG - chr4_3:61826446-61826465 None:intergenic 55.0%
CGGCAATCCTGAAAGCAGTC+TGG - chr4_3:61826009-61826028 None:intergenic 55.0%
GTCCTCACTCACACGCTTTC+CGG + chr4_3:61826070-61826089 Msa0653660:intron 55.0%
TCCTCACTCACACGCTTTCC+GGG + chr4_3:61826071-61826090 Msa0653660:intron 55.0%
ACGCTTTCCGGGAAACTTCC+CGG + chr4_3:61826082-61826101 Msa0653660:intron 55.0%
TTTCCGGGAAACTTCCCGGA+AGG + chr4_3:61826086-61826105 Msa0653660:intron 55.0%
TGACCTTCCGGGAAGTTTCC+CGG - chr4_3:61826092-61826111 None:intergenic 55.0%
CTTAGGATGGGTGACCTTCC+GGG - chr4_3:61826103-61826122 None:intergenic 55.0%
TCCAGAGGCCGTGTAGGTAT+GGG - chr4_3:61826251-61826270 None:intergenic 55.0%
ATCCAGAGGCCGTGTAGGTA+TGG - chr4_3:61826252-61826271 None:intergenic 55.0%
TCGGAATGAGAGGGATCCAG+AGG - chr4_3:61826266-61826285 None:intergenic 55.0%
TGGAACGGGCACTATCCGTA+AGG - chr4_3:61826323-61826342 None:intergenic 55.0%
ATAGTGCCCGTTCCAACTGG+CGG + chr4_3:61826328-61826347 Msa0653660:intron 55.0%
AAGGTTCCCGCCAGTTGGAA+CGG - chr4_3:61826338-61826357 None:intergenic 55.0%
TACGAAAGGTTCCCGCCAGT+TGG - chr4_3:61826343-61826362 None:intergenic 55.0%
TCCCGCCAGTTGGATACGAA+AGG - chr4_3:61826357-61826376 None:intergenic 55.0%
GCTTTCGATATCCCGCCAGT+TGG - chr4_3:61826367-61826386 None:intergenic 55.0%
! ACTAGCTTGTGGGGATGCTG+AGG + chr4_3:61827517-61827536 Msa0653660:CDS 55.0%
AGATGCTAGGGGCAGTTCCT+TGG + chr4_3:61827634-61827653 Msa0653660:CDS 55.0%
! TCCCGGAAAGCGTGTGAGTG+AGG - chr4_3:61826075-61826094 None:intergenic 60.0%
TCCCATACCTACACGGCCTC+TGG + chr4_3:61826247-61826266 Msa0653660:intron 60.0%
CGGATAGTGCCCGTTCCAAC+TGG + chr4_3:61826325-61826344 Msa0653660:intron 60.0%
TAGTGCCCGTTCCAACTGGC+GGG + chr4_3:61826329-61826348 Msa0653660:intron 60.0%
AGGTTCCCGCCAGTTGGAAC+GGG - chr4_3:61826337-61826356 None:intergenic 60.0%
TCCCCGAACCACACCGTACT+GGG + chr4_3:61826430-61826449 Msa0653660:intron 60.0%
TCCCAGTACGGTGTGGTTCG+GGG - chr4_3:61826434-61826453 None:intergenic 60.0%
CTCCCAGTACGGTGTGGTTC+GGG - chr4_3:61826435-61826454 None:intergenic 60.0%
GAACCACACCGTACTGGGAG+AGG + chr4_3:61826435-61826454 Msa0653660:intron 60.0%
AGACCTCTCCCAGTACGGTG+TGG - chr4_3:61826441-61826460 None:intergenic 60.0%
! TCCCGGAAAGCGTGTGAGTG+AGG - chr4_3:61826075-61826094 None:intergenic 60.0%
TCCCATACCTACACGGCCTC+TGG + chr4_3:61826247-61826266 Msa0653660:intron 60.0%
CGGATAGTGCCCGTTCCAAC+TGG + chr4_3:61826325-61826344 Msa0653660:intron 60.0%
TAGTGCCCGTTCCAACTGGC+GGG + chr4_3:61826329-61826348 Msa0653660:intron 60.0%
AGGTTCCCGCCAGTTGGAAC+GGG - chr4_3:61826337-61826356 None:intergenic 60.0%
GAGGGATCCAGAGGCCGTGT+AGG - chr4_3:61826257-61826276 None:intergenic 65.0%
CGAACCAGGCGGAAGCTGGT+GGG - chr4_3:61826410-61826429 None:intergenic 65.0%
ACGAACCAGGCGGAAGCTGG+TGG - chr4_3:61826411-61826430 None:intergenic 65.0%
! TGGTTCGGGGACGAACCAGG+CGG - chr4_3:61826421-61826440 None:intergenic 65.0%
! GTGTGGTTCGGGGACGAACC+AGG - chr4_3:61826424-61826443 None:intergenic 65.0%
GTCCCCGAACCACACCGTAC+TGG + chr4_3:61826429-61826448 Msa0653660:intron 65.0%
GAGGGATCCAGAGGCCGTGT+AGG - chr4_3:61826257-61826276 None:intergenic 65.0%
CATGCCCACCAGCTTCCGCC+TGG + chr4_3:61826403-61826422 Msa0653660:intron 70.0%
GGGACGAACCAGGCGGAAGC+TGG - chr4_3:61826414-61826433 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr4_3 gene 61823710 61827996 61823710 ID=Msa0653660;Name=Msa0653660
chr4_3 mRNA 61823710 61827996 61823710 ID=Msa0653660-mRNA-1;Parent=Msa0653660;Name=Msa0653660-mRNA-1;_AED=0.05;_eAED=0.05;_QI=67|0.33|0.75|0.75|1|1|4|215|481
chr4_3 exon 61823710 61824143 61823710 ID=Msa0653660-mRNA-1:exon:16981;Parent=Msa0653660-mRNA-1
chr4_3 exon 61824234 61824314 61824234 ID=Msa0653660-mRNA-1:exon:16982;Parent=Msa0653660-mRNA-1
chr4_3 exon 61825224 61825914 61825224 ID=Msa0653660-mRNA-1:exon:16983;Parent=Msa0653660-mRNA-1
chr4_3 exon 61827475 61827996 61827475 ID=Msa0653660-mRNA-1:exon:16984;Parent=Msa0653660-mRNA-1
chr4_3 five_prime_UTR 61823710 61823776 61823710 ID=Msa0653660-mRNA-1:five_prime_utr;Parent=Msa0653660-mRNA-1
chr4_3 CDS 61823777 61824143 61823777 ID=Msa0653660-mRNA-1:cds;Parent=Msa0653660-mRNA-1
chr4_3 CDS 61824234 61824314 61824234 ID=Msa0653660-mRNA-1:cds;Parent=Msa0653660-mRNA-1
chr4_3 CDS 61825224 61825914 61825224 ID=Msa0653660-mRNA-1:cds;Parent=Msa0653660-mRNA-1
chr4_3 CDS 61827475 61827781 61827475 ID=Msa0653660-mRNA-1:cds;Parent=Msa0653660-mRNA-1
chr4_3 three_prime_UTR 61827782 61827996 61827782 ID=Msa0653660-mRNA-1:three_prime_utr;Parent=Msa0653660-mRNA-1
Gene Sequence

>Msa0653660

ATGTCTTTATATTGTTCCATCATCCGTGCAAACATACCACATATATTGAAACATGGAAAGAAGAGTGACTACTTTACACTAAGCCATATAGAAGCAAAAACAAGTTCAAGCTTCTTGTCCTTCAATCATCATAAGAACCACTCAAGCCACATTGGTTTTGTGTCTAAATTAGAACAAAACTATTCTTCTCCCTTGATGGAGGAGGACAGACAAATGGTTGGTCTTGTTTCACAATCAGAGAAATATTCCCAAGAATTGGATGTTGCTGTCAGAGCAGTCCAGATGGCTTGCTCTCTATGTCAAAAAGTGCAAGAAACCTTGATTTCCAAGTCATCCAAGGATTGCAATTCTTCAGTCACAGTGGCAGCCATATATGGATTTATATGGAATTCTGAGTTGATTATTGTGTTAGATTGCAATAACTTTGGAGTAGAGTGTCTACTGTCCTGTTGGAGTGTCAAAGCAATTGTGAGCTGGATATTATCTGAATGTTTAAGGGGTGACAATATCTCTATTCTAGCTGAAGAGGAGGTTCAGACTCTCTCCAACACTAATGCATCTGAACTGCTAGAAACTGTAGTAAAAATTGTGAATGAATGTCTAGCTGAAGCACCTCTATTTGGAGTTGAAGCACCAAAATCAGCTCTTGGAACTTCAGAGGTTCTTGAAATCATTAGTCACTTCAACTCGGTTGGGGTTCCTTCCGGAAGATTTTGGGCACTAAGTCCTCTTGATGGCAAAATGGGATTTGTAAATGGTGATCAATATGCTGTAGCTTTATCACTCATAGAGGATGGAGAAGTGGTGGTTGGTGTTCTTGGGTGTCCTAACTACCCTATGAGAAAGGACTGGCTTGGTTATCAGCAAAGTTATCATAGGATTATGTCCAAGTTGATTCCTCCAACATCTGAAACTTGGAACAAAGGTTGTGTAATTTATGCTAAGAAGGATAGTGGCAAGGCTTGGATCCAACCACTGATCCATCATGCCAATAAGAAGTTTGTGTGGCCAAACCATGCAAAACAAGTTTCTCTGTCTTCTGTTGACAACCTAGGATTGGCCACTTTGTGCCAAACAGTTGAGAAGGCTAATTCAAGTCACTCTTTTACTGATGGACTGGCTCATAGTGTTGGTTTCAGCAATAAACCATTAGGAGTTAAGAGCATGATGAAATATGTGGCACTAGCTTGTGGGGATGCTGAGGTGTTTATGAAGTTTGCAAGGACTGGTTACAAAGAGAAAATATGGGATCATGCTGCTGGTTTCATCATCATACAAGAGGCAGGAGGCACAGTAACAGATGCTAGGGGCAGTTCCTTGGATTTCTCTAAAGGTTCATCATATTTAGAAGGGATTGATCGTGGTATAGTTGTTTGTGCTGGAGCCACATTGCATGAAAAGATCATAGATGCTGTTGATGCTAGTTGGGCCTCTTCTAGCCTTTGA

Protein sequence

>Msa0653660

MSLYCSIIRANIPHILKHGKKSDYFTLSHIEAKTSSSFLSFNHHKNHSSHIGFVSKLEQNYSSPLMEEDRQMVGLVSQSEKYSQELDVAVRAVQMACSLCQKVQETLISKSSKDCNSSVTVAAIYGFIWNSELIIVLDCNNFGVECLLSCWSVKAIVSWILSECLRGDNISILAEEEVQTLSNTNASELLETVVKIVNECLAEAPLFGVEAPKSALGTSEVLEIISHFNSVGVPSGRFWALSPLDGKMGFVNGDQYAVALSLIEDGEVVVGVLGCPNYPMRKDWLGYQQSYHRIMSKLIPPTSETWNKGCVIYAKKDSGKAWIQPLIHHANKKFVWPNHAKQVSLSSVDNLGLATLCQTVEKANSSHSFTDGLAHSVGFSNKPLGVKSMMKYVALACGDAEVFMKFARTGYKEKIWDHAAGFIIIQEAGGTVTDARGSSLDFSKGSSYLEGIDRGIVVCAGATLHEKIIDAVDASWASSSL*