AlfalfaGEDB | Msa0212040

M. sativa cultivar zhongmu-4 / Msa0212040

KEGG: K09422
GO: GO:0000160 GO:0000302 GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001101 GO:0001134 GO:0001135 GO:0002218 GO:0002237 GO:0002252 GO:0002253 GO:0002376 GO:0002682 GO:0002684 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0006725 GO:0006950 GO:0006952 GO:0006955 GO:0006979 GO:0007154 GO:0007165 GO:0008150 GO:0008152 GO:0009058 GO:0009267 GO:0009314 GO:0009411 GO:0009416 GO:0009605 GO:0009607 GO:0009617 GO:0009628 GO:0009642 GO:0009646 GO:0009682 GO:0009698 GO:0009699 GO:0009719 GO:0009723 GO:0009725 GO:0009751 GO:0009753 GO:0009755 GO:0009808 GO:0009809 GO:0009866 GO:0009873 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0009991 GO:0010033 GO:0010035 GO:0010038 GO:0010039 GO:0010043 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0014070 GO:0019219 GO:0019222 GO:0019438 GO:0019748 GO:0023052 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031347 GO:0031349 GO:0031667 GO:0031668 GO:0031669 GO:0032502 GO:0032870 GO:0033554 GO:0034599 GO:0034614 GO:0035556 GO:0035690 GO:0042221 GO:0042493 GO:0042592 GO:0042594 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044087 GO:0044212 GO:0044237 GO:0044249 GO:0044424 GO:0044464 GO:0044550 GO:0045087 GO:0045088 GO:0045089 GO:0045893 GO:0045935 GO:0046677 GO:0046686 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048869 GO:0048878 GO:0050776 GO:0050778 GO:0050789 GO:0050794 GO:0050801 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051365 GO:0051704 GO:0051707 GO:0051716 GO:0055065 GO:0055080 GO:0060255 GO:0065007 GO:0065008 GO:0070887 GO:0071241 GO:0071248 GO:0071281 GO:0071310 GO:0071369 GO:0071495 GO:0071496 GO:0071704 GO:0071731 GO:0071732 GO:0080090 GO:0080134 GO:0097159 GO:0097366 GO:0097501 GO:0098542 GO:0098771 GO:0140110 GO:1901360 GO:1901362 GO:1901363 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1901701 GO:1902170 GO:1902680 GO:1903338 GO:1903506 GO:1903508 GO:1990359 GO:1990532 GO:1990641 GO:2000112 GO:2000652 GO:2001141
PFAM: PF00249.34

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212040	XP_013464259.1	94.985	339	5	3	1	337	1	329	0.0	635

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212040	sp\|Q6R0A6\|MYB63_ARATH	48.232	311	126	6	1	296	1	291	2.45e-84	259

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212040	A0A072V8C9	94.985	339	5	3	1	337	1	329	0.0	635

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TFs/TRs:

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Gene ID	Type	Classification
Msa0212040	TF	MYB

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003400	Msa0212040	0.803732	3.028641e-49	-8.615850e-47
Msa0006110	Msa0212040	0.803951	2.728431e-49	-8.615850e-47
Msa0007990	Msa0212040	0.804279	2.331696e-49	-8.615850e-47
Msa0014570	Msa0212040	0.814491	1.499704e-51	-8.615850e-47
Msa0014710	Msa0212040	0.803329	3.671840e-49	-8.615850e-47
Msa0015120	Msa0212040	0.836216	1.065584e-56	-8.615850e-47
Msa0026450	Msa0212040	0.823793	1.144118e-53	-8.615850e-47
Msa0031180	Msa0212040	0.801429	9.043671e-49	-8.615850e-47
Msa0032320	Msa0212040	0.812851	3.443657e-51	-8.615850e-47
Msa0042550	Msa0212040	0.850084	2.134694e-60	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212040	MtrunA17_Chr2g0311221	94.985	339	5	3	1	337	1	329	0.0	635
Msa0212040	MtrunA17_Chr1g0187761	73.554	121	32	0	5	125	3	123	1.68e-61	197
Msa0212040	MtrunA17_Chr1g0167691	48.661	224	84	4	5	200	3	223	2.49e-61	196
Msa0212040	MtrunA17_Chr3g0115821	70.690	116	34	0	4	119	2	117	1.71e-60	197
Msa0212040	MtrunA17_Chr6g0453471	48.131	214	102	4	4	216	2	207	4.65e-60	196
Msa0212040	MtrunA17_Chr7g0261281	59.589	146	53	1	4	143	2	147	5.07e-60	194
Msa0212040	MtrunA17_Chr7g0274581	53.939	165	68	2	7	171	5	161	1.24e-59	190
Msa0212040	MtrunA17_Chr4g0039971	72.414	116	32	0	4	119	3	118	1.70e-59	195
Msa0212040	MtrunA17_Chr1g0167661	53.631	179	74	1	5	174	3	181	3.71e-59	191
Msa0212040	MtrunA17_Chr4g0048511	71.795	117	32	1	4	119	2	118	7.00e-59	193

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0212040	AT1G79180.1	48.232	311	126	6	1	296	1	291	2.50e-85	259
Msa0212040	AT1G16490.1	46.503	286	98	7	1	276	1	241	7.90e-79	242
Msa0212040	AT1G79180.2	43.605	344	126	7	1	296	1	324	3.14e-78	243
Msa0212040	AT1G56160.1	79.832	119	24	0	1	119	1	119	3.55e-70	221
Msa0212040	AT3G12820.1	77.686	121	27	0	1	121	1	121	1.85e-64	204
Msa0212040	AT3G02940.2	74.138	116	30	0	4	119	2	117	4.62e-63	203
Msa0212040	AT3G23250.1	62.838	148	48	1	4	144	2	149	5.81e-63	202
Msa0212040	AT3G02940.1	74.138	116	30	0	4	119	2	117	1.27e-62	202
Msa0212040	AT3G02940.3	74.138	116	30	0	4	119	2	117	1.27e-62	202
Msa0212040	AT2G31180.1	73.913	115	30	0	4	118	2	116	1.41e-62	200

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Find 58 sgRNAs with CRISPR-Local

Find 186 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAATTGCCTCTCTTTAAATC+AGG	0.395073	2_1:-53694005	None:intergenic
AACAAGAATTGGCTTCTTTA+GGG	0.269704	2_1:+53694962	Msa0212040:CDS
AAGAGAATTATCATGGGAAA+AGG	0.457362	2_1:+53691870	Msa0212040:exon
AATAAAGCTACATAAAACCT+TGG	0.496414	2_1:+53694052	Msa0212040:CDS
AATTATTGTTGTTAACAATT+TGG	0.189180	2_1:-53694936	None:intergenic
ACAAGAAATTGACCCTCATG+AGG	0.656432	2_1:+53695254	Msa0212040:CDS
ACAATTTGATTGAAATACCA+TGG	0.523468	2_1:+53695031	Msa0212040:CDS
ACTTGACTCTTATCACAACA+TGG	0.633962	2_1:-53691900	None:intergenic
AGAAATTTGGTCATGAAAAT+TGG	0.205386	2_1:+53691976	Msa0212040:CDS
AGAGCTCTCCCTAAACAAGC+AGG	0.588705	2_1:+53691999	Msa0212040:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGAGAATTATCATGGGAAA+AGG	+	chr2_1:53691870-53691889	Msa0212040:exon	30.0%
TATACATACCTGCTTGTTTA+GGG	-	chr2_1:53692010-53692029	None:intergenic	30.0%
ATATACATACCTGCTTGTTT+AGG	-	chr2_1:53692011-53692030	None:intergenic	30.0%
ATGCAAACAAATCAGTAGTT+TGG	+	chr2_1:53692505-53692524	Msa0212040:intron	30.0%
TATCTTACCTACCATATACA+AGG	+	chr2_1:53692886-53692905	Msa0212040:intron	30.0%
AATTAGTCATAGCTCACAAT+AGG	-	chr2_1:53693114-53693133	None:intergenic	30.0%
CGTGTATGCATAATAAACAA+AGG	+	chr2_1:53693647-53693666	Msa0212040:intron	30.0%
TGAGATGGATCAATTATCTT+AGG	+	chr2_1:53693982-53694001	Msa0212040:CDS	30.0%
AAATTGCCTCTCTTTAAATC+AGG	-	chr2_1:53694008-53694027	None:intergenic	30.0%
AATGCACATATCATGATAAG+CGG	+	chr2_1:53694172-53694191	Msa0212040:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	53691793	53695595	53691793	ID=Msa0212040;Name=Msa0212040
chr2_1	mRNA	53691793	53695595	53691793	ID=Msa0212040-mRNA-1;Parent=Msa0212040;Name=Msa0212040-mRNA-1;_AED=0.08;_eAED=0.08;_QI=89\|1\|1\|1\|1\|1\|3\|218\|337
chr2_1	exon	53691793	53692020	53691793	ID=Msa0212040-mRNA-1:exon:14937;Parent=Msa0212040-mRNA-1
chr2_1	exon	53693952	53694081	53693952	ID=Msa0212040-mRNA-1:exon:14938;Parent=Msa0212040-mRNA-1
chr2_1	exon	53694633	53695595	53694633	ID=Msa0212040-mRNA-1:exon:14939;Parent=Msa0212040-mRNA-1
chr2_1	five_prime_UTR	53691793	53691881	53691793	ID=Msa0212040-mRNA-1:five_prime_utr;Parent=Msa0212040-mRNA-1
chr2_1	CDS	53691882	53692020	53691882	ID=Msa0212040-mRNA-1:cds;Parent=Msa0212040-mRNA-1
chr2_1	CDS	53693952	53694081	53693952	ID=Msa0212040-mRNA-1:cds;Parent=Msa0212040-mRNA-1
chr2_1	CDS	53694633	53695377	53694633	ID=Msa0212040-mRNA-1:cds;Parent=Msa0212040-mRNA-1
chr2_1	three_prime_UTR	53695378	53695595	53695378	ID=Msa0212040-mRNA-1:three_prime_utr;Parent=Msa0212040-mRNA-1

Gene Sequence

>Msa0212040

ATGGGAAAAGGAAGAGCACCATGTTGTGATAAGAGTCAAGTTAAGAGAGGACCTTGGAGCCCTGCTGAAGATCTCAAGCTTATAGCTTTTGTTCAGAAATTTGGTCATGAAAATTGGAGAGCTCTCCCTAAACAAGCAGGTCTTCAACGATGTGGAAAAAGTTGTCGTTTGAGATGGATCAATTATCTTAGGCCTGATTTAAAGAGAGGCAATTTTACAGCAGAGGAAGAGGAAACCATAATAAAGCTACATAAAACCTTGGGAAACAAATGGTCAAAGATTGCATCTTATTTTCCTGGTAGGACTGATAATGAGATCAAGAATGTGTGGAACACACATTTAAAGAAAAAACTTGTTGTCAAAAAATCAGAGTCAAGTGGAGATGAATCCAAATTAGAATCATCAATAACCTCATCCTCTTCATCAGAATCATTTTTATCAAATGAGGTACCAATGAAAGATTCTGAAAAACAAGTATCCAACAATGAACTTGTTATAATCAATGAGGATCCAAAAGGGTCATCATCAAATTCATTATCATCTTCAATTGAGTCTAATATCTTGAACTCAAGCCAAATTGTTAACAACAATAATTTAGAACAAGAATTGGCTTCTTTAGGGTTTTATGATGATGTTGGCAATATATTAGAAGATGTGGATGATCCAAACAATTTGATTGAAATACCATGGGAATCAGATTATGATCTTTGGAATTTTATTGACAATATTGGAACTTATCAATCAAATGTTGGTGAAGAAACTGTTCAAGATGTTGTTGAAGCAAAAAATTGGTCATCACATGATGAATTTGAGAATGAGTTTGGAGTAGTAGGTGAAACAAAGGAGTCAAACAACAAAGATGAGGTCCTACCAAAGAATTATGAAGTTGAACAAGAAATTGACCCTCATGAGGCATTTGATTTCAATGATATTATAATGCCTGATTCTGAATTAGATTTTGGTAATATTCAATTGTGGCCCCCTTTGCCTCAAAATGGTATTCCAAAAGTTTAA

Protein sequence

>Msa0212040

MGKGRAPCCDKSQVKRGPWSPAEDLKLIAFVQKFGHENWRALPKQAGLQRCGKSCRLRWINYLRPDLKRGNFTAEEEETIIKLHKTLGNKWSKIASYFPGRTDNEIKNVWNTHLKKKLVVKKSESSGDESKLESSITSSSSSESFLSNEVPMKDSEKQVSNNELVIINEDPKGSSSNSLSSSIESNILNSSQIVNNNNLEQELASLGFYDDVGNILEDVDDPNNLIEIPWESDYDLWNFIDNIGTYQSNVGEETVQDVVEAKNWSSHDEFENEFGVVGETKESNNKDEVLPKNYEVEQEIDPHEAFDFNDIIMPDSELDFGNIQLWPPLPQNGIPKV*