AlfalfaGEDB | Msa0701960

M. sativa cultivar zhongmu-4 / Msa0701960

KEGG: -
GO: GO:0002376 GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0006952 GO:0006955 GO:0008150 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0009605 GO:0009607 GO:0009627 GO:0009814 GO:0030312 GO:0031976 GO:0031984 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045087 GO:0048046 GO:0050896 GO:0051704 GO:0051707 GO:0071944 GO:0098542
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701960	XP_003629880.1	97.245	363	10	0	1	363	1	363	0.0	723

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701960	sp\|Q9C7N4\|GDL15_ARATH	67.582	364	114	2	3	363	1	363	0.0	518

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701960	G7L7Z9	97.245	363	10	0	1	363	1	363	0.0	723

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0351510	Msa0701960	0.812915	3.333875e-51	-8.615850e-47
Msa0464540	Msa0701960	0.802688	4.982655e-49	-8.615850e-47
Msa0543850	Msa0701960	0.800001	1.768369e-48	-8.615850e-47
Msa0565590	Msa0701960	0.813228	2.847072e-51	-8.615850e-47
Msa0578320	Msa0701960	0.919350	5.027515e-87	-8.615850e-47
Msa0601110	Msa0701960	0.814308	1.645924e-51	-8.615850e-47
Msa0601120	Msa0701960	0.809397	1.930754e-50	-8.615850e-47
Msa0618170	Msa0701960	0.938863	3.327815e-99	-8.615850e-47
Msa0641620	Msa0701960	0.823453	1.374187e-53	-8.615850e-47
Msa0645930	Msa0701960	0.813354	2.670124e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701960	MtrunA17_Chr8g0380041	97.245	363	10	0	1	363	1	363	0.0	723
Msa0701960	MtrunA17_Chr3g0086641	74.444	360	89	3	6	363	12	370	0.0	556
Msa0701960	MtrunA17_Chr2g0285061	71.781	365	101	2	1	363	1	365	0.0	540
Msa0701960	MtrunA17_Chr3g0077571	52.975	353	159	7	12	363	11	357	1.04e-128	373
Msa0701960	MtrunA17_Chr3g0077581	57.059	340	140	5	28	363	33	370	1.73e-128	373
Msa0701960	MtrunA17_Chr8g0380031	48.276	348	156	6	23	363	76	406	2.97e-109	325
Msa0701960	MtrunA17_Chr2g0284991	47.139	367	179	7	3	362	1	359	5.99e-109	323
Msa0701960	MtrunA17_Chr3g0085881	48.071	337	161	6	27	362	29	352	3.70e-108	320
Msa0701960	MtrunA17_Chr2g0284951	46.995	366	178	7	1	362	1	354	7.49e-108	320
Msa0701960	MtrunA17_Chr2g0284921	47.674	344	167	6	24	363	27	361	6.61e-107	318

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701960	AT1G29670.2	67.213	366	116	2	1	363	67	431	0.0	521
Msa0701960	AT1G29670.1	67.582	364	114	2	3	363	1	363	0.0	518
Msa0701960	AT5G45670.1	68.258	356	112	1	9	363	7	362	0.0	516
Msa0701960	AT4G18970.1	72.861	339	91	1	26	363	23	361	0.0	514
Msa0701960	AT4G18970.2	72.647	340	92	1	25	363	22	361	0.0	514
Msa0701960	AT1G29660.1	67.887	355	114	0	9	363	10	364	0.0	513
Msa0701960	AT1G33811.1	51.882	372	168	6	1	363	1	370	3.47e-129	375
Msa0701960	AT1G71691.2	50.294	340	163	6	25	363	49	383	1.21e-117	346
Msa0701960	AT5G08460.1	46.027	365	187	6	6	363	24	385	6.97e-112	332
Msa0701960	AT5G15720.1	48.680	341	169	5	27	363	26	364	1.95e-110	327

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Find 93 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACCACTGTTGATGCAAT+TGG	0.478051	4_4:+73414513	Msa0701960:CDS
AAAATGGTACTATTTGGGAT+TGG	0.509987	4_4:+73416285	Msa0701960:CDS
AAATTTAACAGCTGAGCTAT+TGG	0.411633	4_4:+73415765	Msa0701960:intron
AAGAGTGTAAATATATATAG+TGG	0.457369	4_4:-73414185	None:intergenic
AAGTAAGGACTAAACTCACA+AGG	0.682657	4_4:-73417009	None:intergenic
AATGCTATTAAAATTAAGTA+AGG	0.482276	4_4:-73417024	None:intergenic
AATGCTGGATGCTGTGGAGT+AGG	0.598356	4_4:+73416631	Msa0701960:CDS
AATTATGCTTCTGCAGCAGC+TGG	0.464686	4_4:+73415850	Msa0701960:CDS
AATTTAACAGCTGAGCTATT+GGG	0.380127	4_4:+73415766	Msa0701960:intron
ACAGAAGAGAGTATTTGTTT+TGG	0.298948	4_4:+73416704	Msa0701960:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATGCCATTGAAGCAAAAAT+TGG	-	chr4_4:73414282-73414301	None:intergenic	30.0%
CATAAACATGTTTGCATTGT+TGG	+	chr4_4:73414311-73414330	Msa0701960:CDS	30.0%
TCACCAAATATGAAGTAACA+AGG	-	chr4_4:73414384-73414403	None:intergenic	30.0%
GCATGCACTTGTATATTATA+TGG	+	chr4_4:73414579-73414598	Msa0701960:intron	30.0%
CATAAATTATACTGGTAGAG+TGG	+	chr4_4:73414709-73414728	Msa0701960:intron	30.0%
AGGTAGTTAAAATAACTGGA+GGG	-	chr4_4:73414876-73414895	None:intergenic	30.0%
TAGGTAGTTAAAATAACTGG+AGG	-	chr4_4:73414877-73414896	None:intergenic	30.0%
ATTTCATGGATCATGTTTCT+AGG	-	chr4_4:73414896-73414915	None:intergenic	30.0%
AAGCGTTTGAATTTGTAACA+GGG	+	chr4_4:73414933-73414952	Msa0701960:intron	30.0%
AGTGACCAAAATTGAAGATT+TGG	-	chr4_4:73415068-73415087	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	73414185	73417049	73414185	ID=Msa0701960;Name=Msa0701960
chr4_4	mRNA	73414185	73417049	73414185	ID=Msa0701960-mRNA-1;Parent=Msa0701960;Name=Msa0701960-mRNA-1;_AED=0.26;_eAED=0.26;_QI=109\|1\|1\|1\|1\|1\|4\|209\|363
chr4_4	exon	73414185	73414534	73414185	ID=Msa0701960-mRNA-1:exon:22590;Parent=Msa0701960-mRNA-1
chr4_4	exon	73415776	73415900	73415776	ID=Msa0701960-mRNA-1:exon:22591;Parent=Msa0701960-mRNA-1
chr4_4	exon	73416015	73416516	73416015	ID=Msa0701960-mRNA-1:exon:22592;Parent=Msa0701960-mRNA-1
chr4_4	exon	73416617	73417049	73416617	ID=Msa0701960-mRNA-1:exon:22593;Parent=Msa0701960-mRNA-1
chr4_4	five_prime_UTR	73414185	73414293	73414185	ID=Msa0701960-mRNA-1:five_prime_utr;Parent=Msa0701960-mRNA-1
chr4_4	CDS	73414294	73414534	73414294	ID=Msa0701960-mRNA-1:cds;Parent=Msa0701960-mRNA-1
chr4_4	CDS	73415776	73415900	73415776	ID=Msa0701960-mRNA-1:cds;Parent=Msa0701960-mRNA-1
chr4_4	CDS	73416015	73416516	73416015	ID=Msa0701960-mRNA-1:cds;Parent=Msa0701960-mRNA-1
chr4_4	CDS	73416617	73416840	73416617	ID=Msa0701960-mRNA-1:cds;Parent=Msa0701960-mRNA-1
chr4_4	three_prime_UTR	73416841	73417049	73416841	ID=Msa0701960-mRNA-1:three_prime_utr;Parent=Msa0701960-mRNA-1

Gene Sequence

>Msa0701960

ATGGCATTTGAGGATGTCATAAACATGTTTGCATTGTTGGTTGTTGTGCTTGGTTTGTTGAGTGGGGTTGGAGCTGATCCACAAGTTCCTTGTTACTTCATATTTGGTGATTCTTTGGTGGATAATGGTAACAACAATGGTCTTCAATCTTTGGCTAGAGCTGATTACTTTCCTTATGGAATTGACTTTGGTGGACCTACTGGAAGGTTTTCCAATGGAAAAACCACTGTTGATGCAATTGCTGAGCTATTGGGATTCGATGATTATATTCCACCCTATGCATCTGCTAGTGATGATGCCATACTCAAAGGAGTCAATTATGCTTCTGCAGCAGCTGGAATTAGAGAGGAAACTGGACGGCAACTGGGAGCTCGCCTTAGTTTTAGTGCCCAAGTGCAAAATTACCAAAGCACTGTGTCACAAGTAGTGAATATACTAGGAACTGAGGATCAAGCTGCAAGTCACTTGAGCAAGTGTATTTACTCAATTGGATTGGGTAGCAATGATTACTTGAACAACTATTTCATGCCTCAATTCTATAGCACAGGCACTCAGTATACACCAGATGAGTATGCTGATGATCTTATTCAAGCATATACTGAACAACTTAGAACTCTTTATAATAATGGAGCAAGGAAAATGGTACTATTTGGGATTGGTCAAATAGGCTGCAGCCCAAATATATTGGCTACAAGGAGCCCGGATGGCGTAACATGTGTGGAAGAAATCAATTCAGCAAACCAAATATTCAACAGCAAATTGAAAGGTCTTGTTGATCAATTTAACAACCAGCTTCCTGATTCAAAAGTTATCTATGTAAATTCTTATGGTATTTTTCAAGATATTATAAGCAACCCTTCAGCTTATGGTTTTAGTGTTACAAATGCTGGATGCTGTGGAGTAGGAAGGAACAATGGTCAATTTACATGTCTACCATTGCAAACACCATGTGAGAACAGAAGAGAGTATTTGTTTTGGGATGCTTTTCATCCGACTGAAGCTGGAAATGTAGTTGTTGCTCAGAGAGCTTACAGTGCTCAATCTCCAGAGGATGCTTATCCTATTGATATTAGCCACTTAGCTCAGCTCTGA

Protein sequence

>Msa0701960

MAFEDVINMFALLVVVLGLLSGVGADPQVPCYFIFGDSLVDNGNNNGLQSLARADYFPYGIDFGGPTGRFSNGKTTVDAIAELLGFDDYIPPYASASDDAILKGVNYASAAAGIREETGRQLGARLSFSAQVQNYQSTVSQVVNILGTEDQAASHLSKCIYSIGLGSNDYLNNYFMPQFYSTGTQYTPDEYADDLIQAYTEQLRTLYNNGARKMVLFGIGQIGCSPNILATRSPDGVTCVEEINSANQIFNSKLKGLVDQFNNQLPDSKVIYVNSYGIFQDIISNPSAYGFSVTNAGCCGVGRNNGQFTCLPLQTPCENRREYLFWDAFHPTEAGNVVVAQRAYSAQSPEDAYPIDISHLAQL*