Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464540 | XP_013460895.1 | 95.946 | 148 | 6 | 0 | 2 | 149 | 73 | 220 | 4.05e-99 | 294 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464540 | A0A072UYT0 | 95.946 | 148 | 6 | 0 | 2 | 149 | 73 | 220 | 1.93e-99 | 294 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0002930 | Msa0464540 | 0.810147 | 1.331653e-50 | -8.615850e-47 |
| Msa0004360 | Msa0464540 | 0.815301 | 9.915202e-52 | -8.615850e-47 |
| Msa0005050 | Msa0464540 | 0.854429 | 1.238346e-61 | -8.615850e-47 |
| Msa0012440 | Msa0464540 | 0.808258 | 3.383630e-50 | -8.615850e-47 |
| Msa0016120 | Msa0464540 | 0.828790 | 7.392341e-55 | -8.615850e-47 |
| Msa0018220 | Msa0464540 | 0.801324 | 9.500758e-49 | -8.615850e-47 |
| Msa0022640 | Msa0464540 | 0.829231 | 5.780372e-55 | -8.615850e-47 |
| Msa0036430 | Msa0464540 | 0.827966 | 1.168266e-54 | -8.615850e-47 |
| Msa0043210 | Msa0464540 | 0.819566 | 1.086029e-52 | -8.615850e-47 |
| Msa0050040 | Msa0464540 | 0.853473 | 2.334262e-61 | -8.615850e-47 |
| Msa0052460 | Msa0464540 | 0.803401 | 3.548588e-49 | -8.615850e-47 |
| Msa0053110 | Msa0464540 | 0.865267 | 6.686331e-65 | -8.615850e-47 |
| Msa0057240 | Msa0464540 | 0.815656 | 8.265143e-52 | -8.615850e-47 |
| Msa0072810 | Msa0464540 | 0.814810 | 1.274287e-51 | -8.615850e-47 |
| Msa0077410 | Msa0464540 | 0.824448 | 8.026749e-54 | -8.615850e-47 |
| Msa0083920 | Msa0464540 | 0.801629 | 8.228900e-49 | -8.615850e-47 |
| Msa0084000 | Msa0464540 | 0.802664 | 5.039193e-49 | -8.615850e-47 |
| Msa0084500 | Msa0464540 | 0.826458 | 2.683294e-54 | -8.615850e-47 |
| Msa0097050 | Msa0464540 | 0.805921 | 1.057132e-49 | -8.615850e-47 |
| Msa0098440 | Msa0464540 | 0.871662 | 5.762092e-67 | -8.615850e-47 |
| Msa0102990 | Msa0464540 | 0.853482 | 2.321044e-61 | -8.615850e-47 |
| Msa0103000 | Msa0464540 | 0.806976 | 6.333197e-50 | -8.615850e-47 |
| Msa0106790 | Msa0464540 | 0.826963 | 2.032473e-54 | -8.615850e-47 |
| Msa0109880 | Msa0464540 | 0.820074 | 8.309569e-53 | -8.615850e-47 |
| Msa0109950 | Msa0464540 | 0.824907 | 6.258675e-54 | -8.615850e-47 |
| Msa0125280 | Msa0464540 | 0.805665 | 1.196447e-49 | -8.615850e-47 |
| Msa0130570 | Msa0464540 | 0.833227 | 6.019096e-56 | -8.615850e-47 |
| Msa0134040 | Msa0464540 | 0.823104 | 1.657381e-53 | -8.615850e-47 |
| Msa0134130 | Msa0464540 | 0.822748 | 2.006449e-53 | -8.615850e-47 |
| Msa0135980 | Msa0464540 | 0.800466 | 1.422502e-48 | -8.615850e-47 |
| Msa0137150 | Msa0464540 | 0.817119 | 3.890214e-52 | -8.615850e-47 |
| Msa0139900 | Msa0464540 | 0.825729 | 3.998160e-54 | -8.615850e-47 |
| Msa0141600 | Msa0464540 | 0.841680 | 4.102021e-58 | -8.615850e-47 |
| Msa0147560 | Msa0464540 | 0.812847 | 3.449392e-51 | -8.615850e-47 |
| Msa0147600 | Msa0464540 | 0.812665 | 3.780795e-51 | -8.615850e-47 |
| Msa0149560 | Msa0464540 | 0.810236 | 1.274630e-50 | -8.615850e-47 |
| Msa0153420 | Msa0464540 | 0.823968 | 1.040881e-53 | -8.615850e-47 |
| Msa0161100 | Msa0464540 | 0.802798 | 4.728482e-49 | -8.615850e-47 |
| Msa0161680 | Msa0464540 | 0.832544 | 8.898422e-56 | -8.615850e-47 |
| Msa0176470 | Msa0464540 | 0.832030 | 1.192912e-55 | -8.615850e-47 |
| Msa0181090 | Msa0464540 | 0.809716 | 1.649136e-50 | -8.615850e-47 |
| Msa0200970 | Msa0464540 | 0.815490 | 9.000674e-52 | -8.615850e-47 |
| Msa0203030 | Msa0464540 | 0.824805 | 6.615431e-54 | -8.615850e-47 |
| Msa0203160 | Msa0464540 | 0.833592 | 4.881656e-56 | -8.615850e-47 |
| Msa0206120 | Msa0464540 | 0.806635 | 7.475739e-50 | -8.615850e-47 |
| Msa0206800 | Msa0464540 | 0.804435 | 2.163030e-49 | -8.615850e-47 |
| Msa0219190 | Msa0464540 | 0.870802 | 1.108348e-66 | -8.615850e-47 |
| Msa0236110 | Msa0464540 | 0.810373 | 1.190312e-50 | -8.615850e-47 |
| Msa0369570 | Msa0464540 | 0.803599 | 3.228023e-49 | -8.615850e-47 |
| Msa0370600 | Msa0464540 | 0.936633 | 1.271299e-97 | -8.615850e-47 |
| Msa0378500 | Msa0464540 | 0.806594 | 7.627137e-50 | -8.615850e-47 |
| Msa0382560 | Msa0464540 | 0.807346 | 5.287818e-50 | -8.615850e-47 |
| Msa0398590 | Msa0464540 | 0.839988 | 1.139595e-57 | -8.615850e-47 |
| Msa0406000 | Msa0464540 | 0.809614 | 1.734159e-50 | -8.615850e-47 |
| Msa0408630 | Msa0464540 | 0.834027 | 3.799302e-56 | -8.615850e-47 |
| Msa0408640 | Msa0464540 | 0.869595 | 2.753280e-66 | -8.615850e-47 |
| Msa0413930 | Msa0464540 | 0.837442 | 5.185240e-57 | -8.615850e-47 |
| Msa0418200 | Msa0464540 | 0.934686 | 2.748368e-96 | -8.615850e-47 |
| Msa0436460 | Msa0464540 | 0.817046 | 4.039363e-52 | -8.615850e-47 |
| Msa0436500 | Msa0464540 | 0.875745 | 2.418725e-68 | -8.615850e-47 |
| Msa0444010 | Msa0464540 | 0.817606 | 3.022771e-52 | -8.615850e-47 |
| Msa0451400 | Msa0464540 | 0.821879 | 3.193279e-53 | -8.615850e-47 |
| Msa0453520 | Msa0464540 | 0.816055 | 6.734113e-52 | -8.615850e-47 |
| Msa0458950 | Msa0464540 | 0.805971 | 1.031848e-49 | -8.615850e-47 |
| Msa0464540 | Msa0520510 | 0.810934 | 9.002369e-51 | -8.615850e-47 |
| Msa0464540 | Msa0524210 | 0.815246 | 1.019753e-51 | -8.615850e-47 |
| Msa0464540 | Msa0525240 | 0.806198 | 9.239985e-50 | -8.615850e-47 |
| Msa0464540 | Msa0537270 | 0.845593 | 3.687873e-59 | -8.615850e-47 |
| Msa0464540 | Msa0537920 | 0.860477 | 2.009697e-63 | -8.615850e-47 |
| Msa0464540 | Msa0538220 | 0.856861 | 2.416263e-62 | -8.615850e-47 |
| Msa0464540 | Msa0538570 | 0.829358 | 5.383649e-55 | -8.615850e-47 |
| Msa0464540 | Msa0543850 | 0.861653 | 8.822142e-64 | -8.615850e-47 |
| Msa0464540 | Msa0547050 | 0.809455 | 1.876284e-50 | -8.615850e-47 |
| Msa0464540 | Msa0571080 | 0.807322 | 5.349351e-50 | -8.615850e-47 |
| Msa0464540 | Msa0575250 | 0.801858 | 7.384767e-49 | -8.615850e-47 |
| Msa0464540 | Msa0575740 | 0.821114 | 4.794786e-53 | -8.615850e-47 |
| Msa0464540 | Msa0585730 | 0.820415 | 6.941449e-53 | -8.615850e-47 |
| Msa0464540 | Msa0593710 | 0.840721 | 7.331350e-58 | -8.615850e-47 |
| Msa0464540 | Msa0594090 | 0.801602 | 8.334859e-49 | -8.615850e-47 |
| Msa0464540 | Msa0594390 | 0.838840 | 2.264084e-57 | -8.615850e-47 |
| Msa0464540 | Msa0601110 | 0.849238 | 3.676914e-60 | -8.615850e-47 |
| Msa0464540 | Msa0601120 | 0.843682 | 1.205982e-58 | -8.615850e-47 |
| Msa0464540 | Msa0618170 | 0.800118 | 1.674735e-48 | -8.615850e-47 |
| Msa0464540 | Msa0619980 | 0.801477 | 8.837776e-49 | -8.615850e-47 |
| Msa0464540 | Msa0622410 | 0.808676 | 2.754506e-50 | -8.615850e-47 |
| Msa0464540 | Msa0625890 | 0.831932 | 1.261293e-55 | -8.615850e-47 |
| Msa0464540 | Msa0633750 | 0.821940 | 3.090489e-53 | -8.615850e-47 |
| Msa0464540 | Msa0634270 | 0.824233 | 9.019671e-54 | -8.615850e-47 |
| Msa0464540 | Msa0641250 | 0.825481 | 4.578768e-54 | -8.615850e-47 |
| Msa0464540 | Msa0641620 | 0.847051 | 1.476532e-59 | -8.615850e-47 |
| Msa0464540 | Msa0642650 | 0.803910 | 2.782539e-49 | -8.615850e-47 |
| Msa0464540 | Msa0642910 | 0.812494 | 4.122709e-51 | -8.615850e-47 |
| Msa0464540 | Msa0645050 | 0.819426 | 1.169019e-52 | -8.615850e-47 |
| Msa0464540 | Msa0652980 | 0.802760 | 4.815297e-49 | -8.615850e-47 |
| Msa0464540 | Msa0663590 | 0.827080 | 1.905928e-54 | -8.615850e-47 |
| Msa0464540 | Msa0663680 | 0.849892 | 2.415254e-60 | -8.615850e-47 |
| Msa0464540 | Msa0665910 | -0.801638 | 8.192472e-49 | -8.615850e-47 |
| Msa0464540 | Msa0669840 | 0.829866 | 4.050034e-55 | -8.615850e-47 |
| Msa0464540 | Msa0672110 | 0.837158 | 6.128900e-57 | -8.615850e-47 |
| Msa0464540 | Msa0678890 | 0.851149 | 1.070824e-60 | -8.615850e-47 |
| Msa0464540 | Msa0680150 | 0.884238 | 2.273845e-71 | -8.615850e-47 |
| Msa0464540 | Msa0685330 | 0.814036 | 1.890003e-51 | -8.615850e-47 |
| Msa0464540 | Msa0688500 | 0.862537 | 4.725399e-64 | -8.615850e-47 |
| Msa0464540 | Msa0691160 | 0.830697 | 2.538508e-55 | -8.615850e-47 |
| Msa0464540 | Msa0701960 | 0.802688 | 4.982655e-49 | -8.615850e-47 |
| Msa0464540 | Msa0707220 | 0.851987 | 6.203285e-61 | -8.615850e-47 |
| Msa0464540 | Msa0716790 | 0.804601 | 1.997533e-49 | -8.615850e-47 |
| Msa0464540 | Msa0716800 | 0.803732 | 3.029706e-49 | -8.615850e-47 |
| Msa0464540 | Msa0720040 | 0.816524 | 5.291172e-52 | -8.615850e-47 |
| Msa0464540 | Msa0722940 | 0.866950 | 1.959793e-65 | -8.615850e-47 |
| Msa0464540 | Msa0723150 | 0.871091 | 8.899473e-67 | -8.615850e-47 |
| Msa0464540 | Msa0741900 | 0.823766 | 1.160882e-53 | -8.615850e-47 |
| Msa0464540 | Msa0747780 | 0.871021 | 9.386740e-67 | -8.615850e-47 |
| Msa0464540 | Msa0757870 | 0.834415 | 3.037950e-56 | -8.615850e-47 |
| Msa0464540 | Msa0760840 | 0.808579 | 2.890144e-50 | -8.615850e-47 |
| Msa0464540 | Msa0761580 | 0.855400 | 6.473730e-62 | -8.615850e-47 |
| Msa0464540 | Msa0764820 | 0.817553 | 3.106667e-52 | -8.615850e-47 |
| Msa0464540 | Msa0795960 | 0.800923 | 1.147604e-48 | -8.615850e-47 |
| Msa0464540 | Msa0799210 | 0.829166 | 5.993212e-55 | -8.615850e-47 |
| Msa0464540 | Msa0802840 | 0.813387 | 2.627010e-51 | -8.615850e-47 |
| Msa0464540 | Msa0810020 | 0.845578 | 3.721077e-59 | -8.615850e-47 |
| Msa0464540 | Msa0822990 | 0.815671 | 8.204026e-52 | -8.615850e-47 |
| Msa0464540 | Msa0828830 | 0.801015 | 1.098856e-48 | -8.615850e-47 |
| Msa0464540 | Msa0843290 | 0.814183 | 1.753978e-51 | -8.615850e-47 |
| Msa0464540 | Msa0850500 | 0.821096 | 4.840787e-53 | -8.615850e-47 |
| Msa0464540 | Msa0855310 | 0.806885 | 6.618788e-50 | -8.615850e-47 |
| Msa0464540 | Msa0862100 | 0.828563 | 8.385282e-55 | -8.615850e-47 |
| Msa0464540 | Msa0867350 | 0.853598 | 2.149437e-61 | -8.615850e-47 |
| Msa0464540 | Msa0872310 | 0.871039 | 9.254687e-67 | -8.615850e-47 |
| Msa0464540 | Msa0873190 | 0.856295 | 3.543414e-62 | -8.615850e-47 |
| Msa0464540 | Msa0885060 | 0.854179 | 1.462521e-61 | -8.615850e-47 |
| Msa0464540 | Msa0898730 | 0.850188 | 1.995380e-60 | -8.615850e-47 |
| Msa0464540 | Msa0905550 | 0.881747 | 1.856335e-70 | -8.615850e-47 |
| Msa0464540 | Msa0911990 | 0.800707 | 1.270057e-48 | -8.615850e-47 |
| Msa0464540 | Msa0929870 | 0.846557 | 2.016016e-59 | -8.615850e-47 |
| Msa0464540 | Msa0930330 | 0.818796 | 1.625974e-52 | -8.615850e-47 |
| Msa0464540 | Msa0931480 | 0.829799 | 4.205039e-55 | -8.615850e-47 |
| Msa0464540 | Msa0937550 | 0.883916 | 2.992425e-71 | -8.615850e-47 |
| Msa0464540 | Msa0938430 | 0.834632 | 2.679072e-56 | -8.615850e-47 |
| Msa0464540 | Msa0941960 | 0.807085 | 6.004014e-50 | -8.615850e-47 |
| Msa0464540 | Msa0951460 | 0.848907 | 4.542523e-60 | -8.615850e-47 |
| Msa0464540 | Msa0951960 | 0.840484 | 8.456463e-58 | -8.615850e-47 |
| Msa0464540 | Msa0974750 | 0.862454 | 5.012325e-64 | -8.615850e-47 |
| Msa0464540 | Msa0975580 | 0.832381 | 9.763554e-56 | -8.615850e-47 |
| Msa0464540 | Msa0979510 | 0.816626 | 5.018325e-52 | -8.615850e-47 |
| Msa0464540 | Msa0999300 | 0.809718 | 1.647571e-50 | -8.615850e-47 |
| Msa0464540 | Msa1004500 | 0.818705 | 1.704996e-52 | -8.615850e-47 |
| Msa0464540 | Msa1004520 | 0.809985 | 1.443489e-50 | -8.615850e-47 |
| Msa0464540 | Msa1006860 | 0.807469 | 4.978764e-50 | -8.615850e-47 |
| Msa0464540 | Msa1007350 | 0.838728 | 2.420256e-57 | -8.615850e-47 |
| Msa0464540 | Msa1014270 | 0.848588 | 5.569237e-60 | -8.615850e-47 |
| Msa0464540 | Msa1018790 | 0.803845 | 2.870159e-49 | -8.615850e-47 |
| Msa0464540 | Msa1022650 | 0.807129 | 5.877441e-50 | -8.615850e-47 |
| Msa0464540 | Msa1032450 | 0.832716 | 8.066268e-56 | -8.615850e-47 |
| Msa0464540 | Msa1033560 | 0.851554 | 8.227222e-61 | -8.615850e-47 |
| Msa0464540 | Msa1037900 | 0.835006 | 2.156766e-56 | -8.615850e-47 |
| Msa0464540 | Msa1037920 | 0.821182 | 4.625444e-53 | -8.615850e-47 |
| Msa0464540 | Msa1041530 | 0.879009 | 1.767377e-69 | -8.615850e-47 |
| Msa0464540 | Msa1042670 | 0.832056 | 1.174950e-55 | -8.615850e-47 |
| Msa0464540 | Msa1045780 | 0.814983 | 1.166586e-51 | -8.615850e-47 |
| Msa0464540 | Msa1045880 | 0.805505 | 1.292358e-49 | -8.615850e-47 |
| Msa0464540 | Msa1045970 | 0.807247 | 5.548084e-50 | -8.615850e-47 |
| Msa0464540 | Msa1046870 | 0.822590 | 2.183237e-53 | -8.615850e-47 |
| Msa0464540 | Msa1055260 | 0.839007 | 2.049234e-57 | -8.615850e-47 |
| Msa0464540 | Msa1055280 | 0.836748 | 7.800985e-57 | -8.615850e-47 |
| Msa0464540 | Msa1055500 | 0.809267 | 2.059074e-50 | -8.615850e-47 |
| Msa0464540 | Msa1061500 | 0.803417 | 3.521219e-49 | -8.615850e-47 |
| Msa0464540 | Msa1073340 | 0.837057 | 6.506704e-57 | -8.615850e-47 |
| Msa0464540 | Msa1073350 | 0.818133 | 2.298509e-52 | -8.615850e-47 |
| Msa0464540 | Msa1081570 | 0.874648 | 5.732739e-68 | -8.615850e-47 |
| Msa0464540 | Msa1088130 | 0.814174 | 1.761849e-51 | -8.615850e-47 |
| Msa0464540 | Msa1100700 | 0.806398 | 8.387153e-50 | -8.615850e-47 |
| Msa0464540 | Msa1106810 | 0.815346 | 9.689229e-52 | -8.615850e-47 |
| Msa0464540 | Msa1112610 | 0.800932 | 1.142796e-48 | -8.615850e-47 |
| Msa0464540 | Msa1113850 | 0.852229 | 5.293171e-61 | -8.615850e-47 |
| Msa0464540 | Msa1123880 | 0.837003 | 6.715089e-57 | -8.615850e-47 |
| Msa0464540 | Msa1127140 | 0.877759 | 4.857981e-69 | -8.615850e-47 |
| Msa0464540 | Msa1129960 | 0.844089 | 9.383497e-59 | -8.615850e-47 |
| Msa0464540 | Msa1129970 | 0.809969 | 1.455104e-50 | -8.615850e-47 |
| Msa0464540 | Msa1129980 | 0.810546 | 1.092501e-50 | -8.615850e-47 |
| Msa0464540 | Msa1130010 | 0.816749 | 4.711363e-52 | -8.615850e-47 |
| Msa0464540 | Msa1130690 | 0.808544 | 2.939248e-50 | -8.615850e-47 |
| Msa0464540 | Msa1134400 | 0.810493 | 1.121332e-50 | -8.615850e-47 |
| Msa0464540 | Msa1135870 | 0.801780 | 7.660890e-49 | -8.615850e-47 |
| Msa0464540 | Msa1136230 | 0.823218 | 1.559025e-53 | -8.615850e-47 |
| Msa0464540 | Msa1145020 | 0.856765 | 2.578647e-62 | -8.615850e-47 |
| Msa0464540 | Msa1150970 | 0.800858 | 1.183201e-48 | -8.615850e-47 |
| Msa0464540 | Msa1160400 | 0.825932 | 3.579774e-54 | -8.615850e-47 |
| Msa0464540 | Msa1166400 | 0.863220 | 2.907554e-64 | -8.615850e-47 |
| Msa0464540 | Msa1169990 | 0.839300 | 1.720489e-57 | -8.615850e-47 |
| Msa0464540 | Msa1176160 | 0.833680 | 4.640395e-56 | -8.615850e-47 |
| Msa0464540 | Msa1178160 | 0.800415 | 1.457112e-48 | -8.615850e-47 |
| Msa0464540 | Msa1200920 | 0.813261 | 2.799712e-51 | -8.615850e-47 |
| Msa0464540 | Msa1201110 | 0.832252 | 1.051171e-55 | -8.615850e-47 |
| Msa0464540 | Msa1201160 | 0.851784 | 7.080772e-61 | -8.615850e-47 |
| Msa0464540 | Msa1211090 | 0.811691 | 6.168831e-51 | -8.615850e-47 |
| Msa0464540 | Msa1227950 | 0.845263 | 4.530256e-59 | -8.615850e-47 |
| Msa0464540 | Msa1227970 | 0.835813 | 1.348566e-56 | -8.615850e-47 |
| Msa0464540 | Msa1228610 | 0.818590 | 1.810484e-52 | -8.615850e-47 |
| Msa0464540 | Msa1249870 | 0.814224 | 1.717934e-51 | -8.615850e-47 |
| Msa0464540 | Msa1254190 | 0.816946 | 4.254910e-52 | -8.615850e-47 |
| Msa0464540 | Msa1255280 | 0.803950 | 2.728959e-49 | -8.615850e-47 |
| Msa0464540 | Msa1272330 | 0.845117 | 4.959015e-59 | -8.615850e-47 |
| Msa0464540 | Msa1277400 | 0.800042 | 1.734714e-48 | -8.615850e-47 |
| Msa0464540 | Msa1281720 | 0.808660 | 2.777418e-50 | -8.615850e-47 |
| Msa0464540 | Msa1285900 | 0.811220 | 7.807406e-51 | -8.615850e-47 |
| Msa0464540 | Msa1294290 | 0.836637 | 8.325408e-57 | -8.615850e-47 |
| Msa0464540 | Msa1296800 | 0.808904 | 2.462312e-50 | -8.615850e-47 |
| Msa0464540 | Msa1302150 | 0.808573 | 2.898710e-50 | -8.615850e-47 |
| Msa0464540 | Msa1305510 | 0.832813 | 7.630096e-56 | -8.615850e-47 |
| Msa0464540 | Msa1305750 | 0.807615 | 4.636795e-50 | -8.615850e-47 |
| Msa0464540 | Msa1307190 | 0.823178 | 1.592638e-53 | -8.615850e-47 |
| Msa0464540 | Msa1308950 | 0.807057 | 6.086811e-50 | -8.615850e-47 |
| Msa0464540 | Msa1321000 | 0.832378 | 9.782818e-56 | -8.615850e-47 |
| Msa0464540 | Msa1355400 | 0.943333 | 1.452721e-102 | -8.615850e-47 |
| Msa0464540 | Msa1365020 | 0.836735 | 7.862474e-57 | -8.615850e-47 |
| Msa0464540 | Msa1365200 | 0.813935 | 1.989068e-51 | -8.615850e-47 |
| Msa0464540 | Msa1367410 | 0.837892 | 3.974768e-57 | -8.615850e-47 |
| Msa0464540 | Msa1379990 | 0.829820 | 4.156174e-55 | -8.615850e-47 |
| Msa0464540 | Msa1389470 | 0.802475 | 5.513673e-49 | -8.615850e-47 |
| Msa0464540 | Msa1391370 | 0.801421 | 9.074371e-49 | -8.615850e-47 |
| Msa0464540 | Msa1414930 | 0.815255 | 1.015161e-51 | -8.615850e-47 |
| Msa0464540 | Msa1417650 | 0.804784 | 1.829655e-49 | -8.615850e-47 |
| Msa0464540 | Msa1419490 | 0.800963 | 1.126187e-48 | -8.615850e-47 |
| Msa0464540 | Msa1420060 | 0.896180 | 4.724609e-76 | -8.615850e-47 |
| Msa0464540 | Msa1421550 | 0.863150 | 3.057140e-64 | -8.615850e-47 |
| Msa0464540 | Msa1429420 | 0.823337 | 1.462740e-53 | -8.615850e-47 |
| Msa0464540 | Msa1435040 | 0.808744 | 2.664633e-50 | -8.615850e-47 |
| Msa0464540 | Msa1435050 | 0.802562 | 5.290041e-49 | -8.615850e-47 |
| Msa0464540 | Msa1435670 | 0.816867 | 4.431956e-52 | -8.615850e-47 |
| Msa0464540 | Msa1437710 | 0.808440 | 3.094161e-50 | -8.615850e-47 |
| Msa0464540 | Msa1439670 | 0.827023 | 1.966632e-54 | -8.615850e-47 |
| Msa0464540 | Msa1461060 | 0.811079 | 8.375961e-51 | -8.615850e-47 |
| Msa0257310 | Msa0464540 | 0.800158 | 1.643242e-48 | -8.615850e-47 |
| Msa0260970 | Msa0464540 | 0.828272 | 9.860926e-55 | -8.615850e-47 |
| Msa0298240 | Msa0464540 | 0.860337 | 2.215838e-63 | -8.615850e-47 |
| Msa0314630 | Msa0464540 | 0.819142 | 1.356231e-52 | -8.615850e-47 |
| Msa0315480 | Msa0464540 | 0.804691 | 1.913084e-49 | -8.615850e-47 |
| Msa0317280 | Msa0464540 | 0.805625 | 1.219466e-49 | -8.615850e-47 |
| Msa0322830 | Msa0464540 | 0.827600 | 1.430643e-54 | -8.615850e-47 |
| Msa0322840 | Msa0464540 | 0.818562 | 1.837529e-52 | -8.615850e-47 |
| Msa0322860 | Msa0464540 | 0.811413 | 7.090538e-51 | -8.615850e-47 |
| Msa0326540 | Msa0464540 | 0.811503 | 6.777567e-51 | -8.615850e-47 |
| Msa0336090 | Msa0464540 | 0.815331 | 9.766377e-52 | -8.615850e-47 |
| Msa0337850 | Msa0464540 | 0.833877 | 4.144182e-56 | -8.615850e-47 |
| Msa0340480 | Msa0464540 | 0.808920 | 2.443691e-50 | -8.615850e-47 |
| Msa0351510 | Msa0464540 | 0.815573 | 8.627029e-52 | -8.615850e-47 |
| Msa0359250 | Msa0464540 | 0.834369 | 3.119945e-56 | -8.615850e-47 |
| Msa0361250 | Msa0464540 | 0.812684 | 3.745794e-51 | -8.615850e-47 |
| Msa0361260 | Msa0464540 | 0.873264 | 1.682585e-67 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464540 | MtrunA17_Chr3g0115791 | 95.946 | 148 | 6 | 0 | 2 | 149 | 15 | 162 | 5.06e-103 | 291 |
| Msa0464540 | MtrunA17_Chr5g0425991 | 54.000 | 150 | 50 | 6 | 2 | 146 | 77 | 212 | 1.55e-35 | 122 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0464540 | AT1G78170.1 | 40.171 | 117 | 62 | 2 | 32 | 140 | 96 | 212 | 1.83e-19 | 81.3 |
| Msa0464540 | AT1G22250.1 | 36.567 | 134 | 71 | 5 | 11 | 137 | 62 | 188 | 1.28e-16 | 73.6 |
| Msa0464540 | AT4G08910.1 | 40.000 | 120 | 45 | 3 | 31 | 132 | 86 | 196 | 3.19e-16 | 72.8 |
Find 34 sgRNAs with CRISPR-Local
Find 84 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GAAAACTTCATCTATTTAAC+AGG | 0.250373 | 3_3:+64603955 | None:intergenic |
| CATCTATTTAACAGGGAATA+AGG | 0.258672 | 3_3:+64603963 | None:intergenic |
| TCTTGGTTAGTTTCAAATCT+TGG | 0.327382 | 3_3:+64603853 | None:intergenic |
| CAGCTTCTTCTGCTCTAGTT+AGG | 0.340324 | 3_3:-64604087 | Msa0464540:exon |
| AGCAAGTTTAAGAAAGATTC+GGG | 0.373167 | 3_3:-64604293 | Msa0464540:CDS |
| AAGCAAGTTTAAGAAAGATT+CGG | 0.375998 | 3_3:-64604294 | Msa0464540:CDS |
| CATCTCTTTGTAATCTCCTT+CGG | 0.379098 | 3_3:+64604235 | None:intergenic |
| ATCATGTTCTGTCAAACTCT+TGG | 0.401354 | 3_3:+64604334 | None:intergenic |
| AAAGATTCGGGTGGTTTAAA+CGG | 0.409779 | 3_3:-64604281 | Msa0464540:CDS |
| GTTTCTATCGTTGCCCGATC+GGG | 0.446753 | 3_3:+64604482 | None:intergenic |
| TTGTCGCAGGCTTCGTTTCG+AGG | 0.449883 | 3_3:+64604460 | None:intergenic |
| TCATGTTCTGTCAAACTCTT+GGG | 0.450709 | 3_3:+64604335 | None:intergenic |
| AGTGATCAGAAGAAGAATTC+TGG | 0.461088 | 3_3:-64604365 | Msa0464540:CDS |
| TTTCAGCTTTATATACATCA+TGG | 0.469520 | 3_3:-64604024 | Msa0464540:three_prime_UTR |
| GTATCTGCATTCTGCACTGC+AGG | 0.484235 | 3_3:+64604062 | None:intergenic |
| GGTTTCTATCGTTGCCCGAT+CGG | 0.513121 | 3_3:+64604481 | None:intergenic |
| GAGTGCATGAATTTGCAGTT+AGG | 0.515352 | 3_3:+64604149 | None:intergenic |
| GTGTAACACAAGACCCGATC+GGG | 0.521832 | 3_3:-64604495 | Msa0464540:CDS |
| GTTTAAACGGTTCTCAGTCG+TGG | 0.546535 | 3_3:-64604268 | Msa0464540:CDS |
| CTAGATAGATAACATAGGAT+TGG | 0.557065 | 3_3:+64603995 | None:intergenic |
| AATTTGCAGTTAGGACAAGC+AGG | 0.557243 | 3_3:+64604158 | None:intergenic |
| CGAAGGAGATTACAAAGAGA+TGG | 0.571998 | 3_3:-64604234 | Msa0464540:CDS |
| GCTTTATATACATCATGGCA+TGG | 0.572428 | 3_3:-64604019 | Msa0464540:three_prime_UTR |
| CACATGTCAAGTTTAGCTCA+AGG | 0.577317 | 3_3:+64604411 | None:intergenic |
| AAGCTCATGTGATCAGAAGA+AGG | 0.583375 | 3_3:+64604437 | None:intergenic |
| AAGAACTAGATAGATAACAT+AGG | 0.595365 | 3_3:+64603990 | None:intergenic |
| GATCAGAAGAAGGTTGTCGC+AGG | 0.608082 | 3_3:+64604447 | None:intergenic |
| TGTGTAACACAAGACCCGAT+CGG | 0.608388 | 3_3:-64604496 | Msa0464540:CDS |
| TCGTGGTTGTCGACAACCGA+AGG | 0.619983 | 3_3:-64604251 | Msa0464540:CDS |
| AAAACTTCATCTATTTAACA+GGG | 0.632853 | 3_3:+64603956 | None:intergenic |
| ACTTGACATGTGAATCACAA+AGG | 0.656443 | 3_3:-64604400 | Msa0464540:CDS |
| TTGCATGCAGTGTCACATGT+TGG | 0.659365 | 3_3:-64604201 | Msa0464540:CDS |
| AATATTCTGCTCTGTCAACG+TGG | 0.677868 | 3_3:+64603887 | None:intergenic |
| AAGTTTAAGAAAGATTCGGG+TGG | 0.705138 | 3_3:-64604290 | Msa0464540:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GAGTAACAATTAATATTTTA+AGG | + | chr3_3:64604613-64604632 | None:intergenic | 15.0% |
| !!! | GAGTAACAATTAATATTTTA+AGG | + | chr3_3:64604613-64604632 | None:intergenic | 15.0% |
| !! | ATCATAAGATATGATATCAT+TGG | + | chr3_3:64603869-64603888 | None:intergenic | 20.0% |
| !! | AAAACTTCATCTATTTAACA+GGG | + | chr3_3:64604474-64604493 | None:intergenic | 20.0% |
| !! | ATCATAAGATATGATATCAT+TGG | + | chr3_3:64603869-64603888 | None:intergenic | 20.0% |
| !! | AAAACTTCATCTATTTAACA+GGG | + | chr3_3:64604474-64604493 | None:intergenic | 20.0% |
| !!! | AATTTTTTTTATGTGCAGTC+AGG | - | chr3_3:64603897-64603916 | Msa0464540:three_prime_UTR | 25.0% |
| !!! | ATTTTTTTTATGTGCAGTCA+GGG | - | chr3_3:64603898-64603917 | Msa0464540:three_prime_UTR | 25.0% |
| ! | AAGCAAGTTTAAGAAAGATT+CGG | - | chr3_3:64604133-64604152 | Msa0464540:CDS | 25.0% |
| !! | TTTCAGCTTTATATACATCA+TGG | - | chr3_3:64604403-64604422 | Msa0464540:CDS | 25.0% |
| ! | AAGAACTAGATAGATAACAT+AGG | + | chr3_3:64604440-64604459 | None:intergenic | 25.0% |
| ! | GAAAACTTCATCTATTTAAC+AGG | + | chr3_3:64604475-64604494 | None:intergenic | 25.0% |
| ! | AAGGATTAACAAAAATGTCT+TGG | + | chr3_3:64604594-64604613 | None:intergenic | 25.0% |
| !!! | AATTTTTTTTATGTGCAGTC+AGG | - | chr3_3:64603897-64603916 | Msa0464540:three_prime_UTR | 25.0% |
| !!! | ATTTTTTTTATGTGCAGTCA+GGG | - | chr3_3:64603898-64603917 | Msa0464540:three_prime_UTR | 25.0% |
| ! | AAGCAAGTTTAAGAAAGATT+CGG | - | chr3_3:64604133-64604152 | Msa0464540:CDS | 25.0% |
| !! | TTTCAGCTTTATATACATCA+TGG | - | chr3_3:64604403-64604422 | Msa0464540:CDS | 25.0% |
| ! | AAGAACTAGATAGATAACAT+AGG | + | chr3_3:64604440-64604459 | None:intergenic | 25.0% |
| ! | GAAAACTTCATCTATTTAAC+AGG | + | chr3_3:64604475-64604494 | None:intergenic | 25.0% |
| ! | AAGGATTAACAAAAATGTCT+TGG | + | chr3_3:64604594-64604613 | None:intergenic | 25.0% |
| AGCAAGTTTAAGAAAGATTC+GGG | - | chr3_3:64604134-64604153 | Msa0464540:CDS | 30.0% | |
| ! | TGCTCTTCAAGAATTTTGAA+GGG | + | chr3_3:64604316-64604335 | None:intergenic | 30.0% |
| CTAGATAGATAACATAGGAT+TGG | + | chr3_3:64604435-64604454 | None:intergenic | 30.0% | |
| CATCTATTTAACAGGGAATA+AGG | + | chr3_3:64604467-64604486 | None:intergenic | 30.0% | |
| !! | TCTTGGTTAGTTTCAAATCT+TGG | + | chr3_3:64604577-64604596 | None:intergenic | 30.0% |
| AGCAAGTTTAAGAAAGATTC+GGG | - | chr3_3:64604134-64604153 | Msa0464540:CDS | 30.0% | |
| ! | TGCTCTTCAAGAATTTTGAA+GGG | + | chr3_3:64604316-64604335 | None:intergenic | 30.0% |
| CTAGATAGATAACATAGGAT+TGG | + | chr3_3:64604435-64604454 | None:intergenic | 30.0% | |
| CATCTATTTAACAGGGAATA+AGG | + | chr3_3:64604467-64604486 | None:intergenic | 30.0% | |
| !! | TCTTGGTTAGTTTCAAATCT+TGG | + | chr3_3:64604577-64604596 | None:intergenic | 30.0% |
| ACTTGACATGTGAATCACAA+AGG | - | chr3_3:64604027-64604046 | Msa0464540:three_prime_UTR | 35.0% | |
| AGTGATCAGAAGAAGAATTC+TGG | - | chr3_3:64604062-64604081 | Msa0464540:three_prime_UTR | 35.0% | |
| TCATGTTCTGTCAAACTCTT+GGG | + | chr3_3:64604095-64604114 | None:intergenic | 35.0% | |
| ATCATGTTCTGTCAAACTCT+TGG | + | chr3_3:64604096-64604115 | None:intergenic | 35.0% | |
| AAGTTTAAGAAAGATTCGGG+TGG | - | chr3_3:64604137-64604156 | Msa0464540:CDS | 35.0% | |
| AAAGATTCGGGTGGTTTAAA+CGG | - | chr3_3:64604146-64604165 | Msa0464540:CDS | 35.0% | |
| CATCTCTTTGTAATCTCCTT+CGG | + | chr3_3:64604195-64604214 | None:intergenic | 35.0% | |
| !! | AATTTTGAAGGGTTCTGATC+TGG | + | chr3_3:64604305-64604324 | None:intergenic | 35.0% |
| ! | CTGCTCTTCAAGAATTTTGA+AGG | + | chr3_3:64604317-64604336 | None:intergenic | 35.0% |
| GCTTTATATACATCATGGCA+TGG | - | chr3_3:64604408-64604427 | Msa0464540:CDS | 35.0% | |
| ACTTGACATGTGAATCACAA+AGG | - | chr3_3:64604027-64604046 | Msa0464540:three_prime_UTR | 35.0% | |
| AGTGATCAGAAGAAGAATTC+TGG | - | chr3_3:64604062-64604081 | Msa0464540:three_prime_UTR | 35.0% | |
| TCATGTTCTGTCAAACTCTT+GGG | + | chr3_3:64604095-64604114 | None:intergenic | 35.0% | |
| ATCATGTTCTGTCAAACTCT+TGG | + | chr3_3:64604096-64604115 | None:intergenic | 35.0% | |
| AAGTTTAAGAAAGATTCGGG+TGG | - | chr3_3:64604137-64604156 | Msa0464540:CDS | 35.0% | |
| AAAGATTCGGGTGGTTTAAA+CGG | - | chr3_3:64604146-64604165 | Msa0464540:CDS | 35.0% | |
| CATCTCTTTGTAATCTCCTT+CGG | + | chr3_3:64604195-64604214 | None:intergenic | 35.0% | |
| !! | AATTTTGAAGGGTTCTGATC+TGG | + | chr3_3:64604305-64604324 | None:intergenic | 35.0% |
| ! | CTGCTCTTCAAGAATTTTGA+AGG | + | chr3_3:64604317-64604336 | None:intergenic | 35.0% |
| GCTTTATATACATCATGGCA+TGG | - | chr3_3:64604408-64604427 | Msa0464540:CDS | 35.0% | |
| AAGCTCATGTGATCAGAAGA+AGG | + | chr3_3:64603993-64604012 | None:intergenic | 40.0% | |
| ! | CACATGTCAAGTTTAGCTCA+AGG | + | chr3_3:64604019-64604038 | None:intergenic | 40.0% |
| CGAAGGAGATTACAAAGAGA+TGG | - | chr3_3:64604193-64604212 | Msa0464540:CDS | 40.0% | |
| AATTTGCAGTTAGGACAAGC+AGG | + | chr3_3:64604272-64604291 | None:intergenic | 40.0% | |
| GAGTGCATGAATTTGCAGTT+AGG | + | chr3_3:64604281-64604300 | None:intergenic | 40.0% | |
| AATATTCTGCTCTGTCAACG+TGG | + | chr3_3:64604543-64604562 | None:intergenic | 40.0% | |
| AAGCTCATGTGATCAGAAGA+AGG | + | chr3_3:64603993-64604012 | None:intergenic | 40.0% | |
| ! | CACATGTCAAGTTTAGCTCA+AGG | + | chr3_3:64604019-64604038 | None:intergenic | 40.0% |
| CGAAGGAGATTACAAAGAGA+TGG | - | chr3_3:64604193-64604212 | Msa0464540:CDS | 40.0% | |
| AATTTGCAGTTAGGACAAGC+AGG | + | chr3_3:64604272-64604291 | None:intergenic | 40.0% | |
| GAGTGCATGAATTTGCAGTT+AGG | + | chr3_3:64604281-64604300 | None:intergenic | 40.0% | |
| AATATTCTGCTCTGTCAACG+TGG | + | chr3_3:64604543-64604562 | None:intergenic | 40.0% | |
| TGTGTAACACAAGACCCGAT+CGG | - | chr3_3:64603931-64603950 | Msa0464540:three_prime_UTR | 45.0% | |
| GTTTAAACGGTTCTCAGTCG+TGG | - | chr3_3:64604159-64604178 | Msa0464540:CDS | 45.0% | |
| TTGCATGCAGTGTCACATGT+TGG | - | chr3_3:64604226-64604245 | Msa0464540:CDS | 45.0% | |
| CAGCTTCTTCTGCTCTAGTT+AGG | - | chr3_3:64604340-64604359 | Msa0464540:CDS | 45.0% | |
| TGTGTAACACAAGACCCGAT+CGG | - | chr3_3:64603931-64603950 | Msa0464540:three_prime_UTR | 45.0% | |
| GTTTAAACGGTTCTCAGTCG+TGG | - | chr3_3:64604159-64604178 | Msa0464540:CDS | 45.0% | |
| TTGCATGCAGTGTCACATGT+TGG | - | chr3_3:64604226-64604245 | Msa0464540:CDS | 45.0% | |
| CAGCTTCTTCTGCTCTAGTT+AGG | - | chr3_3:64604340-64604359 | Msa0464540:CDS | 45.0% | |
| GTGTAACACAAGACCCGATC+GGG | - | chr3_3:64603932-64603951 | Msa0464540:three_prime_UTR | 50.0% | |
| GTTTCTATCGTTGCCCGATC+GGG | + | chr3_3:64603948-64603967 | None:intergenic | 50.0% | |
| GGTTTCTATCGTTGCCCGAT+CGG | + | chr3_3:64603949-64603968 | None:intergenic | 50.0% | |
| GATCAGAAGAAGGTTGTCGC+AGG | + | chr3_3:64603983-64604002 | None:intergenic | 50.0% | |
| GTATCTGCATTCTGCACTGC+AGG | + | chr3_3:64604368-64604387 | None:intergenic | 50.0% | |
| GTGTAACACAAGACCCGATC+GGG | - | chr3_3:64603932-64603951 | Msa0464540:three_prime_UTR | 50.0% | |
| GTTTCTATCGTTGCCCGATC+GGG | + | chr3_3:64603948-64603967 | None:intergenic | 50.0% | |
| GGTTTCTATCGTTGCCCGAT+CGG | + | chr3_3:64603949-64603968 | None:intergenic | 50.0% | |
| GATCAGAAGAAGGTTGTCGC+AGG | + | chr3_3:64603983-64604002 | None:intergenic | 50.0% | |
| GTATCTGCATTCTGCACTGC+AGG | + | chr3_3:64604368-64604387 | None:intergenic | 50.0% | |
| TTGTCGCAGGCTTCGTTTCG+AGG | + | chr3_3:64603970-64603989 | None:intergenic | 55.0% | |
| TCGTGGTTGTCGACAACCGA+AGG | - | chr3_3:64604176-64604195 | Msa0464540:CDS | 55.0% | |
| TTGTCGCAGGCTTCGTTTCG+AGG | + | chr3_3:64603970-64603989 | None:intergenic | 55.0% | |
| TCGTGGTTGTCGACAACCGA+AGG | - | chr3_3:64604176-64604195 | Msa0464540:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 64603810 | 64604639 | 64603810 | ID=Msa0464540;Name=Msa0464540 |
| chr3_3 | mRNA | 64603810 | 64604639 | 64603810 | ID=Msa0464540-mRNA-1;Parent=Msa0464540;Name=Msa0464540-mRNA-1;_AED=0.03;_eAED=0.03;_QI=0|0|0.5|1|0|0|2|278|149 |
| chr3_3 | exon | 64603810 | 64604534 | 64603810 | ID=Msa0464540-mRNA-1:exon:14251;Parent=Msa0464540-mRNA-1 |
| chr3_3 | exon | 64604637 | 64604639 | 64604637 | ID=Msa0464540-mRNA-1:exon:14250;Parent=Msa0464540-mRNA-1 |
| chr3_3 | CDS | 64604637 | 64604639 | 64604637 | ID=Msa0464540-mRNA-1:cds;Parent=Msa0464540-mRNA-1 |
| chr3_3 | CDS | 64604088 | 64604534 | 64604088 | ID=Msa0464540-mRNA-1:cds;Parent=Msa0464540-mRNA-1 |
| chr3_3 | three_prime_UTR | 64603810 | 64604087 | 64603810 | ID=Msa0464540-mRNA-1:three_prime_utr;Parent=Msa0464540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
