Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309040 | KEH17865.1 | 92.513 | 187 | 9 | 1 | 1 | 187 | 5 | 186 | 4.58e-107 | 315 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309040 | sp|O80517|BCB2_ARATH | 52.778 | 108 | 47 | 1 | 13 | 120 | 25 | 128 | 2.05e-33 | 120 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309040 | A0A072TWJ3 | 92.513 | 187 | 9 | 1 | 1 | 187 | 5 | 186 | 2.19e-107 | 315 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0030050 | Msa1309040 | 0.804793 | 1.821787e-49 | -8.615850e-47 |
| Msa0040210 | Msa1309040 | 0.801424 | 9.065144e-49 | -8.615850e-47 |
| Msa0046680 | Msa1309040 | 0.810093 | 1.367810e-50 | -8.615850e-47 |
| Msa0064990 | Msa1309040 | 0.803303 | 3.717565e-49 | -8.615850e-47 |
| Msa0099090 | Msa1309040 | -0.806235 | 9.078486e-50 | -8.615850e-47 |
| Msa0615200 | Msa1309040 | 0.808145 | 3.575871e-50 | -8.615850e-47 |
| Msa0616010 | Msa1309040 | 0.802382 | 5.761583e-49 | -8.615850e-47 |
| Msa0618700 | Msa1309040 | 0.805243 | 1.466847e-49 | -8.615850e-47 |
| Msa0619670 | Msa1309040 | 0.805164 | 1.523441e-49 | -8.615850e-47 |
| Msa0633630 | Msa1309040 | 0.812906 | 3.349589e-51 | -8.615850e-47 |
| Msa0652590 | Msa1309040 | 0.803959 | 2.718219e-49 | -8.615850e-47 |
| Msa0652600 | Msa1309040 | 0.827181 | 1.802528e-54 | -8.615850e-47 |
| Msa0654400 | Msa1309040 | -0.800229 | 1.589772e-48 | -8.615850e-47 |
| Msa0655430 | Msa1309040 | 0.812119 | 4.977780e-51 | -8.615850e-47 |
| Msa0657340 | Msa1309040 | 0.820054 | 8.399388e-53 | -8.615850e-47 |
| Msa0672090 | Msa1309040 | 0.817134 | 3.860982e-52 | -8.615850e-47 |
| Msa0686830 | Msa1309040 | 0.803319 | 3.689860e-49 | -8.615850e-47 |
| Msa0687220 | Msa1309040 | 0.812430 | 4.256463e-51 | -8.615850e-47 |
| Msa0698280 | Msa1309040 | 0.820111 | 8.151533e-53 | -8.615850e-47 |
| Msa0701430 | Msa1309040 | 0.839116 | 1.920399e-57 | -8.615850e-47 |
| Msa0701800 | Msa1309040 | -0.801471 | 8.864066e-49 | -8.615850e-47 |
| Msa0713290 | Msa1309040 | 0.809715 | 1.650203e-50 | -8.615850e-47 |
| Msa0716620 | Msa1309040 | 0.814378 | 1.588399e-51 | -8.615850e-47 |
| Msa0731580 | Msa1309040 | 0.810988 | 8.766973e-51 | -8.615850e-47 |
| Msa0742200 | Msa1309040 | 0.822881 | 1.868080e-53 | -8.615850e-47 |
| Msa0744540 | Msa1309040 | 0.822690 | 2.069471e-53 | -8.615850e-47 |
| Msa0744550 | Msa1309040 | 0.832976 | 6.952287e-56 | -8.615850e-47 |
| Msa0744560 | Msa1309040 | 0.822163 | 2.743388e-53 | -8.615850e-47 |
| Msa0755010 | Msa1309040 | 0.811151 | 8.078582e-51 | -8.615850e-47 |
| Msa0761420 | Msa1309040 | 0.818270 | 2.140006e-52 | -8.615850e-47 |
| Msa0771810 | Msa1309040 | 0.803229 | 3.852230e-49 | -8.615850e-47 |
| Msa0789780 | Msa1309040 | 0.802452 | 5.572948e-49 | -8.615850e-47 |
| Msa0809920 | Msa1309040 | 0.812439 | 4.236907e-51 | -8.615850e-47 |
| Msa0823380 | Msa1309040 | 0.824816 | 6.577111e-54 | -8.615850e-47 |
| Msa0826360 | Msa1309040 | 0.833246 | 5.955222e-56 | -8.615850e-47 |
| Msa0826370 | Msa1309040 | 0.829594 | 4.717572e-55 | -8.615850e-47 |
| Msa0826380 | Msa1309040 | 0.807688 | 4.474065e-50 | -8.615850e-47 |
| Msa0826450 | Msa1309040 | 0.810082 | 1.375667e-50 | -8.615850e-47 |
| Msa0831310 | Msa1309040 | 0.800149 | 1.650010e-48 | -8.615850e-47 |
| Msa0837550 | Msa1309040 | 0.821273 | 4.407255e-53 | -8.615850e-47 |
| Msa0121320 | Msa1309040 | 0.800137 | 1.659730e-48 | -8.615850e-47 |
| Msa0138870 | Msa1309040 | 0.809484 | 1.849504e-50 | -8.615850e-47 |
| Msa0146210 | Msa1309040 | 0.809038 | 2.305451e-50 | -8.615850e-47 |
| Msa0148000 | Msa1309040 | -0.817797 | 2.736314e-52 | -8.615850e-47 |
| Msa0193680 | Msa1309040 | 0.805500 | 1.295542e-49 | -8.615850e-47 |
| Msa0200090 | Msa1309040 | 0.812582 | 3.943899e-51 | -8.615850e-47 |
| Msa0214800 | Msa1309040 | 0.828102 | 1.083558e-54 | -8.615850e-47 |
| Msa0231850 | Msa1309040 | 0.806995 | 6.274601e-50 | -8.615850e-47 |
| Msa1226210 | Msa1309040 | 0.800183 | 1.623846e-48 | -8.615850e-47 |
| Msa1228810 | Msa1309040 | 0.818099 | 2.339438e-52 | -8.615850e-47 |
| Msa1233090 | Msa1309040 | 0.801921 | 7.168677e-49 | -8.615850e-47 |
| Msa1254870 | Msa1309040 | 0.802267 | 6.083946e-49 | -8.615850e-47 |
| Msa1275220 | Msa1309040 | 0.839189 | 1.838433e-57 | -8.615850e-47 |
| Msa1298090 | Msa1309040 | 0.803061 | 4.171492e-49 | -8.615850e-47 |
| Msa1309040 | Msa1309050 | 0.838558 | 2.678459e-57 | -8.615850e-47 |
| Msa1309040 | Msa1313720 | 0.842762 | 2.120924e-58 | -8.615850e-47 |
| Msa1309040 | Msa1321490 | 0.803355 | 3.627111e-49 | -8.615850e-47 |
| Msa1309040 | Msa1328430 | 0.801566 | 8.475557e-49 | -8.615850e-47 |
| Msa1309040 | Msa1332340 | -0.804326 | 2.279911e-49 | -8.615850e-47 |
| Msa1309040 | Msa1366470 | 0.827157 | 1.827120e-54 | -8.615850e-47 |
| Msa1309040 | Msa1373990 | 0.809894 | 1.509599e-50 | -8.615850e-47 |
| Msa1309040 | Msa1375640 | 0.806343 | 8.616065e-50 | -8.615850e-47 |
| Msa1309040 | Msa1384410 | -0.804710 | 1.895863e-49 | -8.615850e-47 |
| Msa1309040 | Msa1398120 | 0.815334 | 9.748839e-52 | -8.615850e-47 |
| Msa1309040 | Msa1414340 | 0.800491 | 1.405685e-48 | -8.615850e-47 |
| Msa1309040 | Msa1459130 | -0.805116 | 1.559012e-49 | -8.615850e-47 |
| Msa1309040 | Msa1459920 | 0.830419 | 2.968657e-55 | -8.615850e-47 |
| Msa1309040 | Msa1459930 | 0.817627 | 2.989985e-52 | -8.615850e-47 |
| Msa1309040 | Msa1464140 | 0.817926 | 2.558976e-52 | -8.615850e-47 |
| Msa0374040 | Msa1309040 | 0.811936 | 5.455290e-51 | -8.615850e-47 |
| Msa0375930 | Msa1309040 | -0.804719 | 1.887294e-49 | -8.615850e-47 |
| Msa0378320 | Msa1309040 | 0.806060 | 9.880746e-50 | -8.615850e-47 |
| Msa0390160 | Msa1309040 | 0.808915 | 2.448867e-50 | -8.615850e-47 |
| Msa0390170 | Msa1309040 | 0.825504 | 4.522335e-54 | -8.615850e-47 |
| Msa0390790 | Msa1309040 | 0.803958 | 2.718841e-49 | -8.615850e-47 |
| Msa0398770 | Msa1309040 | 0.819636 | 1.046572e-52 | -8.615850e-47 |
| Msa0412580 | Msa1309040 | -0.822103 | 2.833663e-53 | -8.615850e-47 |
| Msa0417400 | Msa1309040 | 0.800705 | 1.271483e-48 | -8.615850e-47 |
| Msa0421080 | Msa1309040 | 0.815181 | 1.054508e-51 | -8.615850e-47 |
| Msa0424570 | Msa1309040 | -0.806421 | 8.293713e-50 | -8.615850e-47 |
| Msa0427660 | Msa1309040 | 0.807688 | 4.473847e-50 | -8.615850e-47 |
| Msa0457070 | Msa1309040 | -0.812332 | 4.471233e-51 | -8.615850e-47 |
| Msa0466850 | Msa1309040 | 0.808981 | 2.370763e-50 | -8.615850e-47 |
| Msa0480530 | Msa1309040 | 0.819977 | 8.746227e-53 | -8.615850e-47 |
| Msa0480540 | Msa1309040 | 0.830786 | 2.413001e-55 | -8.615850e-47 |
| Msa0480550 | Msa1309040 | 0.821247 | 4.468726e-53 | -8.615850e-47 |
| Msa1003790 | Msa1309040 | 0.800082 | 1.702917e-48 | -8.615850e-47 |
| Msa1018210 | Msa1309040 | -0.820702 | 5.964664e-53 | -8.615850e-47 |
| Msa1022490 | Msa1309040 | 0.817056 | 4.018487e-52 | -8.615850e-47 |
| Msa1022510 | Msa1309040 | 0.820993 | 5.114514e-53 | -8.615850e-47 |
| Msa1031780 | Msa1309040 | 0.802072 | 6.673890e-49 | -8.615850e-47 |
| Msa1035050 | Msa1309040 | 0.819662 | 1.032454e-52 | -8.615850e-47 |
| Msa1041250 | Msa1309040 | 0.804222 | 2.395699e-49 | -8.615850e-47 |
| Msa1041260 | Msa1309040 | 0.815984 | 6.984589e-52 | -8.615850e-47 |
| Msa1075090 | Msa1309040 | 0.835903 | 1.279541e-56 | -8.615850e-47 |
| Msa1082080 | Msa1309040 | 0.800829 | 1.199682e-48 | -8.615850e-47 |
| Msa1087210 | Msa1309040 | 0.809547 | 1.792792e-50 | -8.615850e-47 |
| Msa1104020 | Msa1309040 | -0.806733 | 7.128426e-50 | -8.615850e-47 |
| Msa1106680 | Msa1309040 | 0.822235 | 2.639842e-53 | -8.615850e-47 |
| Msa0242720 | Msa1309040 | 0.851275 | 9.867660e-61 | -8.615850e-47 |
| Msa0246140 | Msa1309040 | 0.807371 | 5.223804e-50 | -8.615850e-47 |
| Msa0271700 | Msa1309040 | 0.802055 | 6.725419e-49 | -8.615850e-47 |
| Msa0271720 | Msa1309040 | 0.811687 | 6.180518e-51 | -8.615850e-47 |
| Msa0274570 | Msa1309040 | 0.811408 | 7.105693e-51 | -8.615850e-47 |
| Msa0281000 | Msa1309040 | 0.832845 | 7.493277e-56 | -8.615850e-47 |
| Msa0294200 | Msa1309040 | 0.830297 | 3.179327e-55 | -8.615850e-47 |
| Msa0303650 | Msa1309040 | 0.826748 | 2.287652e-54 | -8.615850e-47 |
| Msa0324810 | Msa1309040 | 0.846517 | 2.066568e-59 | -8.615850e-47 |
| Msa0347320 | Msa1309040 | 0.823495 | 1.343569e-53 | -8.615850e-47 |
| Msa1108560 | Msa1309040 | 0.811185 | 7.943459e-51 | -8.615850e-47 |
| Msa1110900 | Msa1309040 | 0.819633 | 1.048531e-52 | -8.615850e-47 |
| Msa1115980 | Msa1309040 | 0.800998 | 1.107950e-48 | -8.615850e-47 |
| Msa1142390 | Msa1309040 | 0.820206 | 7.750770e-53 | -8.615850e-47 |
| Msa1162430 | Msa1309040 | 0.861347 | 1.093557e-63 | -8.615850e-47 |
| Msa1165660 | Msa1309040 | 0.829088 | 6.261104e-55 | -8.615850e-47 |
| Msa1174280 | Msa1309040 | 0.822573 | 2.203962e-53 | -8.615850e-47 |
| Msa1179340 | Msa1309040 | 0.825602 | 4.286863e-54 | -8.615850e-47 |
| Msa1183750 | Msa1309040 | 0.830882 | 2.286382e-55 | -8.615850e-47 |
| Msa1186670 | Msa1309040 | 0.816947 | 4.251577e-52 | -8.615850e-47 |
| Msa1202110 | Msa1309040 | 0.807487 | 4.934624e-50 | -8.615850e-47 |
| Msa1211130 | Msa1309040 | 0.807068 | 6.053124e-50 | -8.615850e-47 |
| Msa1218190 | Msa1309040 | 0.813091 | 3.050411e-51 | -8.615850e-47 |
| Msa0493870 | Msa1309040 | 0.813408 | 2.599128e-51 | -8.615850e-47 |
| Msa0500440 | Msa1309040 | 0.807966 | 3.903917e-50 | -8.615850e-47 |
| Msa0508160 | Msa1309040 | 0.801086 | 1.063103e-48 | -8.615850e-47 |
| Msa0513670 | Msa1309040 | 0.815446 | 9.208905e-52 | -8.615850e-47 |
| Msa0515130 | Msa1309040 | 0.807865 | 4.102511e-50 | -8.615850e-47 |
| Msa0516000 | Msa1309040 | -0.800776 | 1.229642e-48 | -8.615850e-47 |
| Msa0518490 | Msa1309040 | 0.809130 | 2.202615e-50 | -8.615850e-47 |
| Msa0537210 | Msa1309040 | 0.815699 | 8.085354e-52 | -8.615850e-47 |
| Msa0557250 | Msa1309040 | 0.803795 | 2.939236e-49 | -8.615850e-47 |
| Msa0559440 | Msa1309040 | -0.800049 | 1.728952e-48 | -8.615850e-47 |
| Msa0561110 | Msa1309040 | 0.821751 | 3.417435e-53 | -8.615850e-47 |
| Msa0565180 | Msa1309040 | 0.806440 | 8.217735e-50 | -8.615850e-47 |
| Msa0568780 | Msa1309040 | -0.850382 | 1.760215e-60 | -8.615850e-47 |
| Msa0587870 | Msa1309040 | 0.802151 | 6.427894e-49 | -8.615850e-47 |
| Msa0591490 | Msa1309040 | 0.804791 | 1.823594e-49 | -8.615850e-47 |
| Msa0593600 | Msa1309040 | 0.805211 | 1.489495e-49 | -8.615850e-47 |
| Msa0850480 | Msa1309040 | 0.808348 | 3.236638e-50 | -8.615850e-47 |
| Msa0865810 | Msa1309040 | 0.823530 | 1.318419e-53 | -8.615850e-47 |
| Msa0865830 | Msa1309040 | 0.829141 | 6.077323e-55 | -8.615850e-47 |
| Msa0869660 | Msa1309040 | 0.810980 | 8.801248e-51 | -8.615850e-47 |
| Msa0921790 | Msa1309040 | 0.800736 | 1.252973e-48 | -8.615850e-47 |
| Msa0935440 | Msa1309040 | 0.804899 | 1.731039e-49 | -8.615850e-47 |
| Msa0940780 | Msa1309040 | 0.826100 | 3.264363e-54 | -8.615850e-47 |
| Msa0945330 | Msa1309040 | 0.823294 | 1.496792e-53 | -8.615850e-47 |
| Msa0976400 | Msa1309040 | 0.815280 | 1.002141e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309040 | MtrunA17_Chr8g0335531 | 92.513 | 187 | 9 | 1 | 1 | 187 | 5 | 186 | 4.22e-111 | 315 |
| Msa1309040 | MtrunA17_Chr8g0335571 | 85.052 | 194 | 22 | 1 | 1 | 187 | 5 | 198 | 3.04e-91 | 265 |
| Msa1309040 | MtrunA17_Chr3g0132441 | 53.846 | 117 | 50 | 3 | 1 | 116 | 7 | 120 | 8.17e-34 | 118 |
| Msa1309040 | MtrunA17_Chr3g0132431 | 48.485 | 132 | 61 | 3 | 6 | 132 | 11 | 140 | 1.06e-31 | 113 |
| Msa1309040 | MtrunA17_Chr3g0132411 | 47.244 | 127 | 63 | 3 | 1 | 126 | 46 | 169 | 4.73e-30 | 108 |
| Msa1309040 | MtrunA17_Chr2g0323021 | 39.041 | 146 | 84 | 3 | 4 | 148 | 11 | 152 | 1.81e-29 | 108 |
| Msa1309040 | MtrunA17_Chr3g0132511 | 50.442 | 113 | 53 | 3 | 6 | 116 | 11 | 122 | 1.51e-28 | 105 |
| Msa1309040 | MtrunA17_Chr3g0132701 | 50.442 | 113 | 53 | 3 | 6 | 116 | 11 | 122 | 1.56e-28 | 105 |
| Msa1309040 | MtrunA17_Chr5g0394321 | 37.179 | 156 | 85 | 5 | 5 | 155 | 11 | 158 | 2.01e-28 | 104 |
| Msa1309040 | MtrunA17_Chr1g0205701 | 32.500 | 160 | 96 | 4 | 7 | 163 | 12 | 162 | 1.02e-26 | 100 |
| Msa1309040 | MtrunA17_Chr6g0481491 | 38.525 | 122 | 70 | 2 | 2 | 120 | 7 | 126 | 2.94e-24 | 94.7 |
| Msa1309040 | MtrunA17_Chr1g0196801 | 34.109 | 129 | 83 | 1 | 17 | 145 | 20 | 146 | 2.78e-23 | 91.3 |
| Msa1309040 | MtrunA17_Chr4g0064041 | 42.537 | 134 | 65 | 5 | 6 | 129 | 10 | 141 | 4.32e-23 | 94.4 |
| Msa1309040 | MtrunA17_Chr4g0064041 | 44.118 | 102 | 50 | 4 | 20 | 116 | 191 | 290 | 4.54e-20 | 86.3 |
| Msa1309040 | MtrunA17_Chr6g0459441 | 46.602 | 103 | 52 | 2 | 15 | 116 | 21 | 121 | 1.18e-22 | 89.7 |
| Msa1309040 | MtrunA17_Chr1g0211101 | 35.065 | 154 | 90 | 6 | 1 | 148 | 12 | 161 | 2.91e-22 | 88.6 |
| Msa1309040 | MtrunA17_Chr7g0253681 | 37.815 | 119 | 72 | 2 | 1 | 118 | 8 | 125 | 1.27e-20 | 84.0 |
| Msa1309040 | MtrunA17_Chr7g0253641 | 42.308 | 104 | 57 | 2 | 15 | 117 | 21 | 122 | 1.64e-20 | 85.1 |
| Msa1309040 | MtrunA17_Chr8g0380901 | 40.517 | 116 | 61 | 5 | 1 | 115 | 11 | 119 | 4.92e-20 | 81.3 |
| Msa1309040 | MtrunA17_Chr7g0253701 | 37.815 | 119 | 71 | 3 | 1 | 118 | 8 | 124 | 5.98e-20 | 82.0 |
| Msa1309040 | MtrunA17_Chr7g0253671 | 37.815 | 119 | 71 | 3 | 1 | 118 | 8 | 124 | 5.98e-20 | 82.0 |
| Msa1309040 | MtrunA17_Chr3g0125791 | 44.231 | 104 | 52 | 4 | 15 | 117 | 28 | 126 | 8.59e-20 | 80.9 |
| Msa1309040 | MtrunA17_Chr1g0177341 | 36.036 | 111 | 69 | 2 | 8 | 117 | 13 | 122 | 2.09e-19 | 80.5 |
| Msa1309040 | MtrunA17_Chr1g0177331 | 36.036 | 111 | 69 | 2 | 8 | 117 | 13 | 122 | 2.09e-19 | 80.5 |
| Msa1309040 | MtrunA17_Chr2g0324721 | 34.463 | 177 | 98 | 5 | 17 | 177 | 24 | 198 | 3.10e-19 | 81.3 |
| Msa1309040 | MtrunA17_Chr2g0301431 | 38.793 | 116 | 65 | 4 | 1 | 115 | 13 | 123 | 3.50e-19 | 79.0 |
| Msa1309040 | MtrunA17_Chr4g0040291 | 32.317 | 164 | 105 | 3 | 17 | 177 | 22 | 182 | 7.17e-19 | 80.1 |
| Msa1309040 | MtrunA17_Chr3g0125761 | 38.793 | 116 | 65 | 4 | 1 | 115 | 14 | 124 | 1.96e-18 | 77.0 |
| Msa1309040 | MtrunA17_Chr2g0331181 | 33.824 | 136 | 78 | 4 | 17 | 143 | 24 | 156 | 2.45e-17 | 75.9 |
| Msa1309040 | MtrunA17_Chr8g0360371 | 36.090 | 133 | 74 | 6 | 2 | 126 | 5 | 134 | 3.48e-17 | 77.4 |
| Msa1309040 | MtrunA17_Chr7g0253631 | 37.607 | 117 | 65 | 3 | 1 | 116 | 12 | 121 | 6.63e-17 | 75.9 |
| Msa1309040 | MtrunA17_Chr4g0033131 | 38.739 | 111 | 59 | 4 | 17 | 120 | 25 | 133 | 1.20e-16 | 73.6 |
| Msa1309040 | MtrunA17_Chr4g0033531 | 38.739 | 111 | 59 | 4 | 17 | 120 | 25 | 133 | 1.20e-16 | 73.6 |
| Msa1309040 | MtrunA17_Chr7g0253761 | 36.752 | 117 | 66 | 3 | 1 | 116 | 12 | 121 | 2.00e-16 | 73.2 |
| Msa1309040 | MtrunA17_Chr7g0253731 | 33.036 | 112 | 73 | 2 | 8 | 118 | 13 | 123 | 3.07e-16 | 72.4 |
| Msa1309040 | MtrunA17_Chr1g0150131 | 33.333 | 141 | 85 | 4 | 3 | 136 | 7 | 145 | 3.27e-16 | 72.8 |
| Msa1309040 | MtrunA17_Chr2g0306461 | 34.711 | 121 | 69 | 4 | 6 | 118 | 9 | 127 | 4.80e-16 | 72.8 |
| Msa1309040 | MtrunA17_Chr6g0483981 | 34.839 | 155 | 89 | 5 | 17 | 161 | 24 | 176 | 6.12e-16 | 75.1 |
| Msa1309040 | MtrunA17_Chr3g0136871 | 31.944 | 144 | 82 | 4 | 35 | 175 | 47 | 177 | 2.95e-15 | 70.1 |
| Msa1309040 | MtrunA17_Chr4g0073901 | 31.967 | 122 | 75 | 4 | 1 | 116 | 10 | 129 | 4.02e-15 | 70.1 |
| Msa1309040 | MtrunA17_Chr6g0453921 | 32.168 | 143 | 83 | 6 | 6 | 145 | 24 | 155 | 6.81e-15 | 69.3 |
| Msa1309040 | MtrunA17_Chr4g0064031 | 38.144 | 97 | 52 | 5 | 17 | 105 | 25 | 121 | 1.34e-14 | 68.2 |
| Msa1309040 | MtrunA17_Chr8g0380711 | 39.604 | 101 | 54 | 5 | 17 | 115 | 25 | 120 | 1.37e-14 | 67.0 |
| Msa1309040 | MtrunA17_Chr6g0458331 | 32.231 | 121 | 74 | 4 | 17 | 132 | 34 | 151 | 4.11e-14 | 67.0 |
| Msa1309040 | MtrunA17_Chr6g0453801 | 29.530 | 149 | 96 | 5 | 8 | 150 | 23 | 168 | 7.85e-14 | 66.2 |
| Msa1309040 | MtrunA17_Chr4g0001571 | 33.663 | 101 | 63 | 3 | 17 | 116 | 26 | 123 | 8.75e-14 | 66.2 |
| Msa1309040 | MtrunA17_Chr2g0289741 | 33.333 | 135 | 82 | 5 | 20 | 151 | 27 | 156 | 4.55e-13 | 64.3 |
| Msa1309040 | MtrunA17_Chr4g0041811 | 29.048 | 210 | 113 | 7 | 4 | 184 | 16 | 218 | 6.13e-13 | 64.7 |
| Msa1309040 | MtrunA17_Chr2g0324711 | 32.530 | 166 | 97 | 8 | 1 | 157 | 8 | 167 | 8.04e-13 | 65.9 |
| Msa1309040 | MtrunA17_Chr4g0073921 | 31.200 | 125 | 78 | 4 | 1 | 119 | 10 | 132 | 1.32e-12 | 64.3 |
| Msa1309040 | MtrunA17_Chr4g0039721 | 28.873 | 142 | 92 | 3 | 17 | 150 | 29 | 169 | 1.73e-12 | 62.8 |
| Msa1309040 | MtrunA17_Chr2g0319611 | 33.036 | 112 | 66 | 3 | 17 | 121 | 23 | 132 | 3.64e-12 | 63.2 |
| Msa1309040 | MtrunA17_Chr2g0317231 | 36.190 | 105 | 56 | 5 | 20 | 118 | 25 | 124 | 4.18e-12 | 63.9 |
| Msa1309040 | MtrunA17_Chr6g0453791 | 32.000 | 125 | 78 | 4 | 22 | 144 | 33 | 152 | 4.36e-12 | 61.6 |
| Msa1309040 | MtrunA17_Chr8g0385041 | 29.630 | 162 | 98 | 5 | 1 | 153 | 1 | 155 | 5.41e-12 | 63.2 |
| Msa1309040 | MtrunA17_Chr8g0385031 | 32.143 | 168 | 98 | 5 | 1 | 156 | 7 | 170 | 8.15e-12 | 62.4 |
| Msa1309040 | MtrunA17_Chr8g0379081 | 29.921 | 127 | 80 | 3 | 62 | 188 | 2 | 119 | 9.10e-12 | 59.7 |
| Msa1309040 | MtrunA17_Chr8g0385021 | 32.716 | 162 | 99 | 5 | 1 | 156 | 7 | 164 | 3.70e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1309040 | AT3G60270.1 | 53.271 | 107 | 48 | 1 | 13 | 119 | 19 | 123 | 1.96e-34 | 120 |
| Msa1309040 | AT2G44790.1 | 52.778 | 108 | 47 | 1 | 13 | 120 | 25 | 128 | 2.08e-34 | 120 |
| Msa1309040 | AT3G60280.1 | 50.467 | 107 | 51 | 1 | 13 | 119 | 17 | 121 | 1.07e-32 | 117 |
| Msa1309040 | AT2G32300.1 | 48.305 | 118 | 54 | 3 | 17 | 129 | 23 | 138 | 1.77e-30 | 112 |
| Msa1309040 | AT2G32300.2 | 48.305 | 118 | 54 | 3 | 17 | 129 | 53 | 168 | 5.67e-30 | 111 |
| Msa1309040 | AT1G72230.1 | 42.953 | 149 | 79 | 2 | 8 | 156 | 11 | 153 | 5.36e-28 | 103 |
| Msa1309040 | AT5G07475.1 | 36.301 | 146 | 91 | 1 | 17 | 162 | 27 | 170 | 2.88e-27 | 102 |
| Msa1309040 | AT3G27200.1 | 44.545 | 110 | 58 | 2 | 9 | 117 | 15 | 122 | 4.65e-27 | 101 |
| Msa1309040 | AT2G31050.1 | 40.876 | 137 | 72 | 4 | 4 | 133 | 8 | 142 | 2.60e-25 | 97.4 |
| Msa1309040 | AT2G26720.1 | 38.235 | 136 | 75 | 4 | 5 | 133 | 9 | 142 | 9.87e-24 | 93.6 |
| Msa1309040 | AT5G26330.1 | 35.833 | 120 | 72 | 3 | 1 | 117 | 5 | 122 | 1.60e-23 | 92.4 |
| Msa1309040 | AT1G22480.1 | 48.936 | 94 | 46 | 1 | 28 | 121 | 27 | 118 | 5.32e-22 | 88.2 |
| Msa1309040 | AT3G17675.1 | 38.000 | 100 | 59 | 2 | 18 | 116 | 30 | 127 | 1.58e-20 | 83.2 |
| Msa1309040 | AT2G25060.1 | 37.879 | 132 | 71 | 5 | 4 | 126 | 15 | 144 | 6.98e-20 | 82.8 |
| Msa1309040 | AT1G79800.1 | 36.066 | 122 | 70 | 3 | 19 | 135 | 33 | 151 | 1.25e-18 | 79.7 |
| Msa1309040 | AT2G02850.1 | 40.179 | 112 | 61 | 4 | 7 | 117 | 23 | 129 | 3.27e-18 | 77.0 |
| Msa1309040 | AT5G20230.1 | 37.302 | 126 | 69 | 4 | 19 | 136 | 24 | 147 | 3.41e-18 | 78.6 |
| Msa1309040 | AT4G31840.1 | 32.203 | 177 | 85 | 8 | 17 | 186 | 24 | 172 | 5.40e-18 | 77.8 |
| Msa1309040 | AT4G28365.1 | 33.735 | 166 | 92 | 6 | 5 | 157 | 12 | 172 | 8.10e-18 | 77.8 |
| Msa1309040 | AT5G53870.2 | 31.937 | 191 | 101 | 8 | 5 | 171 | 10 | 195 | 1.01e-17 | 80.1 |
| Msa1309040 | AT5G53870.1 | 31.937 | 191 | 101 | 8 | 5 | 171 | 10 | 195 | 1.69e-17 | 79.3 |
| Msa1309040 | AT4G27520.1 | 35.246 | 122 | 70 | 4 | 5 | 119 | 12 | 131 | 6.95e-17 | 77.4 |
| Msa1309040 | AT4G30590.1 | 42.169 | 83 | 45 | 2 | 37 | 118 | 50 | 130 | 2.30e-15 | 71.2 |
| Msa1309040 | AT1G64640.1 | 31.783 | 129 | 81 | 3 | 17 | 138 | 30 | 158 | 3.03e-15 | 70.9 |
| Msa1309040 | AT3G20570.1 | 32.515 | 163 | 102 | 4 | 1 | 157 | 9 | 169 | 2.17e-14 | 68.9 |
| Msa1309040 | AT5G15350.1 | 28.649 | 185 | 88 | 6 | 2 | 174 | 1 | 153 | 4.58e-14 | 67.4 |
| Msa1309040 | AT5G57920.1 | 31.313 | 99 | 65 | 2 | 35 | 132 | 43 | 139 | 7.30e-14 | 67.0 |
| Msa1309040 | AT3G53330.1 | 35.200 | 125 | 75 | 4 | 16 | 136 | 184 | 306 | 8.87e-14 | 68.6 |
| Msa1309040 | AT5G57920.3 | 31.313 | 99 | 65 | 2 | 35 | 132 | 75 | 171 | 1.11e-13 | 67.0 |
| Msa1309040 | AT5G57920.2 | 31.633 | 98 | 64 | 2 | 35 | 131 | 42 | 137 | 1.29e-13 | 66.2 |
| Msa1309040 | AT4G12880.1 | 33.333 | 114 | 70 | 4 | 6 | 116 | 15 | 125 | 7.43e-13 | 63.2 |
| Msa1309040 | AT4G32490.1 | 28.736 | 174 | 99 | 5 | 1 | 151 | 12 | 183 | 7.54e-13 | 65.1 |
| Msa1309040 | AT1G48940.1 | 31.667 | 120 | 75 | 2 | 1 | 114 | 7 | 125 | 2.18e-12 | 62.8 |
| Msa1309040 | AT5G25090.1 | 28.571 | 126 | 81 | 4 | 1 | 119 | 6 | 129 | 3.14e-12 | 62.8 |
| Msa1309040 | AT1G45063.1 | 36.585 | 123 | 67 | 6 | 2 | 117 | 9 | 127 | 8.01e-11 | 60.5 |
| Msa1309040 | AT1G45063.2 | 36.585 | 123 | 67 | 6 | 2 | 117 | 9 | 127 | 9.99e-11 | 59.7 |
Find 40 sgRNAs with CRISPR-Local
Find 126 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTTTGTTTCAGCAATGATTT+TGG | 0.095923 | 8_4:+5444847 | Msa1309040:CDS |
| TCCATCATCATAGCTCTTTA+TGG | 0.186656 | 8_4:-5444540 | None:intergenic |
| GATTATACCAAATGGGCTTC+TGG | 0.307591 | 8_4:+5444182 | Msa1309040:CDS |
| CCATCACCACCAAAGGATAA+TGG | 0.368895 | 8_4:+5444779 | Msa1309040:CDS |
| CTATGATGATGGAGATTCTA+AGG | 0.371455 | 8_4:+5444550 | Msa1309040:CDS |
| ACTCCATCAACAACTCCTTC+AGG | 0.392365 | 8_4:+5444740 | Msa1309040:CDS |
| GTCCCTGAAGGAGTTGTTGA+TGG | 0.397137 | 8_4:-5444743 | None:intergenic |
| AAGGAGTTGATTATACCAAA+TGG | 0.424289 | 8_4:+5444174 | Msa1309040:CDS |
| CCATTATCCTTTGGTGGTGA+TGG | 0.426718 | 8_4:-5444779 | None:intergenic |
| GTTGTTGATGGAGTAGTTGA+TGG | 0.440380 | 8_4:-5444731 | None:intergenic |
| CTAACAGCTCCATTATCCTT+TGG | 0.447592 | 8_4:-5444788 | None:intergenic |
| CATCAATTTCATTCACTTGG+TGG | 0.471616 | 8_4:-5444484 | None:intergenic |
| TTCAAAGTTGGTGATAACTT+AGG | 0.472319 | 8_4:+5444212 | Msa1309040:CDS |
| AAGGTTGCATTGACTAAAGC+AGG | 0.472415 | 8_4:+5444569 | Msa1309040:CDS |
| GGTACCACTTGGAGTTGGGG+TGG | 0.472947 | 8_4:-5444678 | None:intergenic |
| AAATCAGTTGCAAATGCATA+AGG | 0.473584 | 8_4:-5444122 | None:intergenic |
| CTCCATCAACAACTCCTTCA+GGG | 0.489544 | 8_4:+5444741 | Msa1309040:CDS |
| AGGAGTTGATTATACCAAAT+GGG | 0.490730 | 8_4:+5444175 | Msa1309040:CDS |
| CCAGGTCATTGTACTAGTAC+TGG | 0.496658 | 8_4:+5444617 | Msa1309040:CDS |
| TTTCATCAATTTCATTCACT+TGG | 0.519793 | 8_4:-5444487 | None:intergenic |
| TTTGCAACTGATTTCACTGT+TGG | 0.522709 | 8_4:+5444131 | Msa1309040:CDS |
| GAAGTTGAGTTTGTCCCTGA+AGG | 0.522749 | 8_4:-5444755 | None:intergenic |
| ACAGCTCCATTATCCTTTGG+TGG | 0.526576 | 8_4:-5444785 | None:intergenic |
| TACTTCATATGTCCTACTCC+AGG | 0.534065 | 8_4:+5444599 | Msa1309040:CDS |
| AATTTCATTCACTTGGTGGA+AGG | 0.545100 | 8_4:-5444480 | None:intergenic |
| ACCATAAAGAGCTATGATGA+TGG | 0.545401 | 8_4:+5444539 | Msa1309040:CDS |
| CATCAAAAGACTAACACCAT+TGG | 0.545497 | 8_4:-5444816 | None:intergenic |
| GTGAATGAAATTGATGAAAG+TGG | 0.554625 | 8_4:+5444491 | Msa1309040:CDS |
| TTCACTGTTGGTGATGCCAG+TGG | 0.555149 | 8_4:+5444143 | Msa1309040:CDS |
| AACTTCTCCATCACCACCAA+AGG | 0.566009 | 8_4:+5444772 | Msa1309040:CDS |
| CTGTTGGTGATGCCAGTGGA+TGG | 0.566622 | 8_4:+5444147 | Msa1309040:CDS |
| AACTCCTTGAGTCCATCCAC+TGG | 0.575230 | 8_4:-5444159 | None:intergenic |
| CTAGTACAATGACCTGGAGT+AGG | 0.594294 | 8_4:-5444611 | None:intergenic |
| GTAGTTGATGGAGTGCCACT+TGG | 0.611661 | 8_4:-5444719 | None:intergenic |
| CCAGTACTAGTACAATGACC+TGG | 0.623789 | 8_4:-5444617 | None:intergenic |
| GATGCCAGTGGATGGACTCA+AGG | 0.625162 | 8_4:+5444155 | Msa1309040:CDS |
| CCACCAACAAAATCTCCAAG+TGG | 0.631426 | 8_4:+5444704 | Msa1309040:CDS |
| AGCACCACCCCAACTCCAAG+TGG | 0.637196 | 8_4:+5444674 | Msa1309040:CDS |
| GGTCATTGTACTAGTACTGG+TGG | 0.645353 | 8_4:+5444620 | Msa1309040:CDS |
| GGAGCTGTTAGTGTTTCCAA+TGG | 0.664368 | 8_4:+5444800 | Msa1309040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTATTTTTTTTATAAGCA+AGG | + | chr8_4:5444256-5444275 | Msa1309040:intron | 10.0% |
| !!! | TTTTATTTTTTTTATAAGCA+AGG | + | chr8_4:5444256-5444275 | Msa1309040:intron | 10.0% |
| !!! | TATATCAAACTTTTTCAATG+TGG | - | chr8_4:5444347-5444366 | None:intergenic | 20.0% |
| !! | GAAAAAACAGTGTTTAAATA+TGG | + | chr8_4:5444455-5444474 | Msa1309040:intron | 20.0% |
| !!! | TATATCAAACTTTTTCAATG+TGG | - | chr8_4:5444347-5444366 | None:intergenic | 20.0% |
| !! | GAAAAAACAGTGTTTAAATA+TGG | + | chr8_4:5444455-5444474 | Msa1309040:intron | 20.0% |
| !!! | TTCTTTCTTTGTTTTGTTGT+TGG | + | chr8_4:5444094-5444113 | Msa1309040:CDS | 25.0% |
| ! | TCTGGAAAAAAATTCAAAGT+TGG | + | chr8_4:5444200-5444219 | Msa1309040:CDS | 25.0% |
| ! | TTTCATCAATTTCATTCACT+TGG | - | chr8_4:5444490-5444509 | None:intergenic | 25.0% |
| !! | TTTGTTTCAGCAATGATTTT+GGG | + | chr8_4:5444848-5444867 | Msa1309040:CDS | 25.0% |
| !!! | TTCTTTCTTTGTTTTGTTGT+TGG | + | chr8_4:5444094-5444113 | Msa1309040:CDS | 25.0% |
| ! | TCTGGAAAAAAATTCAAAGT+TGG | + | chr8_4:5444200-5444219 | Msa1309040:CDS | 25.0% |
| ! | TTTCATCAATTTCATTCACT+TGG | - | chr8_4:5444490-5444509 | None:intergenic | 25.0% |
| !! | TTTGTTTCAGCAATGATTTT+GGG | + | chr8_4:5444848-5444867 | Msa1309040:CDS | 25.0% |
| AAATCAGTTGCAAATGCATA+AGG | - | chr8_4:5444125-5444144 | None:intergenic | 30.0% | |
| ! | AAGGAGTTGATTATACCAAA+TGG | + | chr8_4:5444174-5444193 | Msa1309040:CDS | 30.0% |
| ! | AGGAGTTGATTATACCAAAT+GGG | + | chr8_4:5444175-5444194 | Msa1309040:CDS | 30.0% |
| !! | TTCAAAGTTGGTGATAACTT+AGG | + | chr8_4:5444212-5444231 | Msa1309040:CDS | 30.0% |
| !!! | TTTTTTATAAGCAAGGAGAG+AGG | + | chr8_4:5444263-5444282 | Msa1309040:intron | 30.0% |
| GTGAATGAAATTGATGAAAG+TGG | + | chr8_4:5444491-5444510 | Msa1309040:CDS | 30.0% | |
| !!! | AATGGTGTTAGTCTTTTGAT+GGG | + | chr8_4:5444818-5444837 | Msa1309040:CDS | 30.0% |
| !! | CTTTGTTTCAGCAATGATTT+TGG | + | chr8_4:5444847-5444866 | Msa1309040:CDS | 30.0% |
| AAATCAGTTGCAAATGCATA+AGG | - | chr8_4:5444125-5444144 | None:intergenic | 30.0% | |
| ! | AAGGAGTTGATTATACCAAA+TGG | + | chr8_4:5444174-5444193 | Msa1309040:CDS | 30.0% |
| ! | AGGAGTTGATTATACCAAAT+GGG | + | chr8_4:5444175-5444194 | Msa1309040:CDS | 30.0% |
| !! | TTCAAAGTTGGTGATAACTT+AGG | + | chr8_4:5444212-5444231 | Msa1309040:CDS | 30.0% |
| !!! | TTTTTTATAAGCAAGGAGAG+AGG | + | chr8_4:5444263-5444282 | Msa1309040:intron | 30.0% |
| GTGAATGAAATTGATGAAAG+TGG | + | chr8_4:5444491-5444510 | Msa1309040:CDS | 30.0% | |
| !!! | AATGGTGTTAGTCTTTTGAT+GGG | + | chr8_4:5444818-5444837 | Msa1309040:CDS | 30.0% |
| !! | CTTTGTTTCAGCAATGATTT+TGG | + | chr8_4:5444847-5444866 | Msa1309040:CDS | 30.0% |
| ! | TTTGCAACTGATTTCACTGT+TGG | + | chr8_4:5444131-5444150 | Msa1309040:CDS | 35.0% |
| !!! | TTTTTTTCCAGAAGCCCATT+TGG | - | chr8_4:5444192-5444211 | None:intergenic | 35.0% |
| ! | AATTTCATTCACTTGGTGGA+AGG | - | chr8_4:5444483-5444502 | None:intergenic | 35.0% |
| CATCAATTTCATTCACTTGG+TGG | - | chr8_4:5444487-5444506 | None:intergenic | 35.0% | |
| ACCATAAAGAGCTATGATGA+TGG | + | chr8_4:5444539-5444558 | Msa1309040:CDS | 35.0% | |
| TCCATCATCATAGCTCTTTA+TGG | - | chr8_4:5444543-5444562 | None:intergenic | 35.0% | |
| !! | CTATGATGATGGAGATTCTA+AGG | + | chr8_4:5444550-5444569 | Msa1309040:CDS | 35.0% |
| CATCAAAAGACTAACACCAT+TGG | - | chr8_4:5444819-5444838 | None:intergenic | 35.0% | |
| !!! | CAATGGTGTTAGTCTTTTGA+TGG | + | chr8_4:5444817-5444836 | Msa1309040:CDS | 35.0% |
| !!! | AGCAATGATTTTGGGTTTGA+TGG | + | chr8_4:5444856-5444875 | Msa1309040:CDS | 35.0% |
| ! | TTTGCAACTGATTTCACTGT+TGG | + | chr8_4:5444131-5444150 | Msa1309040:CDS | 35.0% |
| !!! | TTTTTTTCCAGAAGCCCATT+TGG | - | chr8_4:5444192-5444211 | None:intergenic | 35.0% |
| ! | AATTTCATTCACTTGGTGGA+AGG | - | chr8_4:5444483-5444502 | None:intergenic | 35.0% |
| CATCAATTTCATTCACTTGG+TGG | - | chr8_4:5444487-5444506 | None:intergenic | 35.0% | |
| ACCATAAAGAGCTATGATGA+TGG | + | chr8_4:5444539-5444558 | Msa1309040:CDS | 35.0% | |
| TCCATCATCATAGCTCTTTA+TGG | - | chr8_4:5444543-5444562 | None:intergenic | 35.0% | |
| !! | CTATGATGATGGAGATTCTA+AGG | + | chr8_4:5444550-5444569 | Msa1309040:CDS | 35.0% |
| CATCAAAAGACTAACACCAT+TGG | - | chr8_4:5444819-5444838 | None:intergenic | 35.0% | |
| !!! | CAATGGTGTTAGTCTTTTGA+TGG | + | chr8_4:5444817-5444836 | Msa1309040:CDS | 35.0% |
| !!! | AGCAATGATTTTGGGTTTGA+TGG | + | chr8_4:5444856-5444875 | Msa1309040:CDS | 35.0% |
| ! | GATTATACCAAATGGGCTTC+TGG | + | chr8_4:5444182-5444201 | Msa1309040:CDS | 40.0% |
| !! | AAGGTTGCATTGACTAAAGC+AGG | + | chr8_4:5444569-5444588 | Msa1309040:CDS | 40.0% |
| TACTTCATATGTCCTACTCC+AGG | + | chr8_4:5444599-5444618 | Msa1309040:CDS | 40.0% | |
| ! | ACTTGGAGATTTTGTTGGTG+GGG | - | chr8_4:5444705-5444724 | None:intergenic | 40.0% |
| ! | CACTTGGAGATTTTGTTGGT+GGG | - | chr8_4:5444706-5444725 | None:intergenic | 40.0% |
| ! | GTTGTTGATGGAGTAGTTGA+TGG | - | chr8_4:5444734-5444753 | None:intergenic | 40.0% |
| CTAACAGCTCCATTATCCTT+TGG | - | chr8_4:5444791-5444810 | None:intergenic | 40.0% | |
| ! | GATTATACCAAATGGGCTTC+TGG | + | chr8_4:5444182-5444201 | Msa1309040:CDS | 40.0% |
| !! | AAGGTTGCATTGACTAAAGC+AGG | + | chr8_4:5444569-5444588 | Msa1309040:CDS | 40.0% |
| TACTTCATATGTCCTACTCC+AGG | + | chr8_4:5444599-5444618 | Msa1309040:CDS | 40.0% | |
| ! | ACTTGGAGATTTTGTTGGTG+GGG | - | chr8_4:5444705-5444724 | None:intergenic | 40.0% |
| ! | CACTTGGAGATTTTGTTGGT+GGG | - | chr8_4:5444706-5444725 | None:intergenic | 40.0% |
| ! | GTTGTTGATGGAGTAGTTGA+TGG | - | chr8_4:5444734-5444753 | None:intergenic | 40.0% |
| CTAACAGCTCCATTATCCTT+TGG | - | chr8_4:5444791-5444810 | None:intergenic | 40.0% | |
| GAGAGAGGACAAACATCAAG+AGG | + | chr8_4:5444278-5444297 | Msa1309040:intron | 45.0% | |
| CTAGTACAATGACCTGGAGT+AGG | - | chr8_4:5444614-5444633 | None:intergenic | 45.0% | |
| CCAGTACTAGTACAATGACC+TGG | - | chr8_4:5444620-5444639 | None:intergenic | 45.0% | |
| CCAGGTCATTGTACTAGTAC+TGG | + | chr8_4:5444617-5444636 | Msa1309040:CDS | 45.0% | |
| ! | GGTCATTGTACTAGTACTGG+TGG | + | chr8_4:5444620-5444639 | Msa1309040:CDS | 45.0% |
| !! | TTGGAGATTTTGTTGGTGGG+GGG | - | chr8_4:5444703-5444722 | None:intergenic | 45.0% |
| !! | CTTGGAGATTTTGTTGGTGG+GGG | - | chr8_4:5444704-5444723 | None:intergenic | 45.0% |
| ! | CCACTTGGAGATTTTGTTGG+TGG | - | chr8_4:5444707-5444726 | None:intergenic | 45.0% |
| CCACCAACAAAATCTCCAAG+TGG | + | chr8_4:5444704-5444723 | Msa1309040:CDS | 45.0% | |
| !!! | GTGCCACTTGGAGATTTTGT+TGG | - | chr8_4:5444710-5444729 | None:intergenic | 45.0% |
| ACTCCATCAACAACTCCTTC+AGG | + | chr8_4:5444740-5444759 | Msa1309040:CDS | 45.0% | |
| CTCCATCAACAACTCCTTCA+GGG | + | chr8_4:5444741-5444760 | Msa1309040:CDS | 45.0% | |
| GAAGTTGAGTTTGTCCCTGA+AGG | - | chr8_4:5444758-5444777 | None:intergenic | 45.0% | |
| AACTTCTCCATCACCACCAA+AGG | + | chr8_4:5444772-5444791 | Msa1309040:CDS | 45.0% | |
| !! | CCATTATCCTTTGGTGGTGA+TGG | - | chr8_4:5444782-5444801 | None:intergenic | 45.0% |
| CCATCACCACCAAAGGATAA+TGG | + | chr8_4:5444779-5444798 | Msa1309040:CDS | 45.0% | |
| ACAGCTCCATTATCCTTTGG+TGG | - | chr8_4:5444788-5444807 | None:intergenic | 45.0% | |
| GGAGCTGTTAGTGTTTCCAA+TGG | + | chr8_4:5444800-5444819 | Msa1309040:CDS | 45.0% | |
| GAGAGAGGACAAACATCAAG+AGG | + | chr8_4:5444278-5444297 | Msa1309040:intron | 45.0% | |
| CTAGTACAATGACCTGGAGT+AGG | - | chr8_4:5444614-5444633 | None:intergenic | 45.0% | |
| CCAGTACTAGTACAATGACC+TGG | - | chr8_4:5444620-5444639 | None:intergenic | 45.0% | |
| CCAGGTCATTGTACTAGTAC+TGG | + | chr8_4:5444617-5444636 | Msa1309040:CDS | 45.0% | |
| ! | GGTCATTGTACTAGTACTGG+TGG | + | chr8_4:5444620-5444639 | Msa1309040:CDS | 45.0% |
| !! | TTGGAGATTTTGTTGGTGGG+GGG | - | chr8_4:5444703-5444722 | None:intergenic | 45.0% |
| !! | CTTGGAGATTTTGTTGGTGG+GGG | - | chr8_4:5444704-5444723 | None:intergenic | 45.0% |
| ! | CCACTTGGAGATTTTGTTGG+TGG | - | chr8_4:5444707-5444726 | None:intergenic | 45.0% |
| CCACCAACAAAATCTCCAAG+TGG | + | chr8_4:5444704-5444723 | Msa1309040:CDS | 45.0% | |
| !!! | GTGCCACTTGGAGATTTTGT+TGG | - | chr8_4:5444710-5444729 | None:intergenic | 45.0% |
| ACTCCATCAACAACTCCTTC+AGG | + | chr8_4:5444740-5444759 | Msa1309040:CDS | 45.0% | |
| CTCCATCAACAACTCCTTCA+GGG | + | chr8_4:5444741-5444760 | Msa1309040:CDS | 45.0% | |
| GAAGTTGAGTTTGTCCCTGA+AGG | - | chr8_4:5444758-5444777 | None:intergenic | 45.0% | |
| AACTTCTCCATCACCACCAA+AGG | + | chr8_4:5444772-5444791 | Msa1309040:CDS | 45.0% | |
| !! | CCATTATCCTTTGGTGGTGA+TGG | - | chr8_4:5444782-5444801 | None:intergenic | 45.0% |
| CCATCACCACCAAAGGATAA+TGG | + | chr8_4:5444779-5444798 | Msa1309040:CDS | 45.0% | |
| ACAGCTCCATTATCCTTTGG+TGG | - | chr8_4:5444788-5444807 | None:intergenic | 45.0% | |
| GGAGCTGTTAGTGTTTCCAA+TGG | + | chr8_4:5444800-5444819 | Msa1309040:CDS | 45.0% | |
| !! | TTCACTGTTGGTGATGCCAG+TGG | + | chr8_4:5444143-5444162 | Msa1309040:CDS | 50.0% |
| AACTCCTTGAGTCCATCCAC+TGG | - | chr8_4:5444162-5444181 | None:intergenic | 50.0% | |
| !! | TGGAGATTTTGTTGGTGGGG+GGG | - | chr8_4:5444702-5444721 | None:intergenic | 50.0% |
| !! | GTAGTTGATGGAGTGCCACT+TGG | - | chr8_4:5444722-5444741 | None:intergenic | 50.0% |
| GTCCCTGAAGGAGTTGTTGA+TGG | - | chr8_4:5444746-5444765 | None:intergenic | 50.0% | |
| !! | TTCACTGTTGGTGATGCCAG+TGG | + | chr8_4:5444143-5444162 | Msa1309040:CDS | 50.0% |
| AACTCCTTGAGTCCATCCAC+TGG | - | chr8_4:5444162-5444181 | None:intergenic | 50.0% | |
| !! | TGGAGATTTTGTTGGTGGGG+GGG | - | chr8_4:5444702-5444721 | None:intergenic | 50.0% |
| !! | GTAGTTGATGGAGTGCCACT+TGG | - | chr8_4:5444722-5444741 | None:intergenic | 50.0% |
| GTCCCTGAAGGAGTTGTTGA+TGG | - | chr8_4:5444746-5444765 | None:intergenic | 50.0% | |
| !! | CTGTTGGTGATGCCAGTGGA+TGG | + | chr8_4:5444147-5444166 | Msa1309040:CDS | 55.0% |
| ! | GATGCCAGTGGATGGACTCA+AGG | + | chr8_4:5444155-5444174 | Msa1309040:CDS | 55.0% |
| !! | CTGTTGGTGATGCCAGTGGA+TGG | + | chr8_4:5444147-5444166 | Msa1309040:CDS | 55.0% |
| ! | GATGCCAGTGGATGGACTCA+AGG | + | chr8_4:5444155-5444174 | Msa1309040:CDS | 55.0% |
| AGCACCACCCCAACTCCAAG+TGG | + | chr8_4:5444674-5444693 | Msa1309040:CDS | 60.0% | |
| GGTACCACTTGGAGTTGGGG+TGG | - | chr8_4:5444681-5444700 | None:intergenic | 60.0% | |
| !! | GGGGGTACCACTTGGAGTTG+GGG | - | chr8_4:5444684-5444703 | None:intergenic | 60.0% |
| !! | GGGGGGTACCACTTGGAGTT+GGG | - | chr8_4:5444685-5444704 | None:intergenic | 60.0% |
| AGCACCACCCCAACTCCAAG+TGG | + | chr8_4:5444674-5444693 | Msa1309040:CDS | 60.0% | |
| GGTACCACTTGGAGTTGGGG+TGG | - | chr8_4:5444681-5444700 | None:intergenic | 60.0% | |
| !! | GGGGGTACCACTTGGAGTTG+GGG | - | chr8_4:5444684-5444703 | None:intergenic | 60.0% |
| !! | GGGGGGTACCACTTGGAGTT+GGG | - | chr8_4:5444685-5444704 | None:intergenic | 60.0% |
| !! | GGGGGGGTACCACTTGGAGT+TGG | - | chr8_4:5444686-5444705 | None:intergenic | 65.0% |
| !! | GTTGGTGGGGGGGTACCACT+TGG | - | chr8_4:5444692-5444711 | None:intergenic | 65.0% |
| !! | GGGGGGGTACCACTTGGAGT+TGG | - | chr8_4:5444686-5444705 | None:intergenic | 65.0% |
| !! | GTTGGTGGGGGGGTACCACT+TGG | - | chr8_4:5444692-5444711 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_4 | gene | 5444086 | 5444883 | 5444086 | ID=Msa1309040;Name=Msa1309040 |
| chr8_4 | mRNA | 5444086 | 5444883 | 5444086 | ID=Msa1309040-mRNA-1;Parent=Msa1309040;Name=Msa1309040-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0|0|1|1|1|2|0|188 |
| chr8_4 | exon | 5444086 | 5444233 | 5444086 | ID=Msa1309040-mRNA-1:exon:1719;Parent=Msa1309040-mRNA-1 |
| chr8_4 | exon | 5444465 | 5444883 | 5444465 | ID=Msa1309040-mRNA-1:exon:1720;Parent=Msa1309040-mRNA-1 |
| chr8_4 | CDS | 5444086 | 5444233 | 5444086 | ID=Msa1309040-mRNA-1:cds;Parent=Msa1309040-mRNA-1 |
| chr8_4 | CDS | 5444465 | 5444883 | 5444465 | ID=Msa1309040-mRNA-1:cds;Parent=Msa1309040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
