AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1027290


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027290 MtrunA17_Chr7g0245741 86.592 179 16 2 2 176 54 228 3.75e-105 305
Msa1027290 MtrunA17_Chr7g0245741 97.826 46 1 0 158 203 281 326 3.73e-24 97.1
Msa1027290 MtrunA17_Chr7g0245711 83.529 170 20 2 3 168 17 182 3.21e-97 284
Msa1027290 MtrunA17_Chr7g0245711 91.304 46 4 0 158 203 243 288 1.34e-22 92.4
Msa1027290 MtrunA17_Chr7g0245731 83.041 171 21 2 2 168 104 270 9.07e-96 283
Msa1027290 MtrunA17_Chr7g0245731 91.304 46 4 0 158 203 331 376 4.91e-22 92.0
Msa1027290 MtrunA17_Chr7g0245691 52.536 276 57 4 2 203 55 330 1.29e-92 273
Msa1027290 MtrunA17_Chr7g0245671 52.899 276 56 4 2 203 54 329 5.26e-91 270
Msa1027290 MtrunA17_Chr7g0245641 73.529 170 41 1 2 167 92 261 8.92e-88 263
Msa1027290 MtrunA17_Chr7g0245641 70.833 48 14 0 156 203 319 366 5.85e-16 75.1
Msa1027290 MtrunA17_Chr7g0245631 66.250 160 50 1 2 157 54 213 4.24e-70 216
Msa1027290 MtrunA17_Chr7g0245631 54.167 72 30 2 133 203 257 326 5.76e-17 77.8
Msa1027290 MtrunA17_Chr4g0010991 49.686 159 76 1 3 157 56 214 1.51e-42 145
Msa1027290 MtrunA17_Chr1g0155411 44.654 159 84 1 3 157 54 212 3.23e-42 145
Msa1027290 MtrunA17_Chr1g0155431 43.396 159 86 1 2 156 53 211 6.15e-39 136
Msa1027290 MtrunA17_Chr4g0048961 39.873 158 89 1 6 157 62 219 5.94e-35 126
Msa1027290 MtrunA17_Chr8g0363831 35.057 174 99 5 3 169 55 221 3.34e-28 107
Msa1027290 MtrunA17_Chr4g0042101 32.386 176 105 3 6 167 70 245 2.40e-26 103
Msa1027290 MtrunA17_Chr8g0364051 34.483 174 100 5 3 169 54 220 3.07e-26 102
Msa1027290 MtrunA17_Chr2g0331211 36.735 147 83 5 2 141 50 193 4.13e-25 99.8
Msa1027290 MtrunA17_Chr3g0077231 34.000 150 89 4 3 145 52 198 1.37e-24 98.2
Msa1027290 MtrunA17_Chr4g0039321 34.194 155 92 4 3 150 55 206 8.66e-24 96.3
Msa1027290 MtrunA17_Chr3g0077221 32.667 150 91 4 3 145 56 202 3.35e-22 92.0
Msa1027290 MtrunA17_Chr5g0423551 32.738 168 101 6 5 165 52 214 5.43e-22 91.3
Msa1027290 MtrunA17_Chr3g0106111 35.632 174 93 6 2 166 50 213 1.11e-21 90.5
Msa1027290 MtrunA17_Chr4g0039311 32.432 148 90 5 3 143 57 201 7.52e-20 85.5
Msa1027290 MtrunA17_Chr2g0281991 33.742 163 94 5 3 151 54 216 9.57e-20 85.5
Msa1027290 MtrunA17_Chr4g0002661 34.459 148 86 4 3 143 58 201 1.77e-19 84.7
Msa1027290 MtrunA17_Chr4g0002961 34.694 147 87 3 3 143 58 201 3.87e-18 80.9
Msa1027290 MtrunA17_Chr5g0431311 34.104 173 93 8 2 164 50 211 1.19e-17 79.3
Msa1027290 MtrunA17_Chr2g0282001 30.952 168 102 4 3 156 53 220 6.54e-17 77.4
Msa1027290 MtrunA17_Chr6g0450211 29.319 191 108 6 5 178 102 282 9.10e-17 77.4
Msa1027290 MtrunA17_Chr7g0275521 31.667 180 105 4 3 166 53 230 3.86e-15 72.8
Msa1027290 MtrunA17_Chr2g0282011 34.375 128 75 3 3 121 54 181 6.46e-15 72.0
Msa1027290 MtrunA17_Chr4g0001321 30.201 149 90 4 3 145 62 202 2.16e-12 64.7
Msa1027290 MtrunA17_Chr2g0333781 31.544 149 88 5 3 145 65 205 4.35e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1027290 AT2G45400.4 48.171 164 76 3 3 157 88 251 9.45e-46 152
Msa1027290 AT2G45400.3 48.171 164 76 3 3 157 31 194 4.36e-45 152
Msa1027290 AT2G45400.2 48.171 164 76 3 3 157 88 251 1.14e-44 151
Msa1027290 AT2G45400.1 48.171 164 76 3 3 157 88 251 1.89e-44 151
Msa1027290 AT5G42800.1 44.654 159 84 1 2 156 53 211 1.12e-39 139
Msa1027290 AT1G61720.1 41.429 140 76 1 7 140 62 201 2.36e-31 117
Msa1027290 AT4G35420.1 36.913 149 85 4 3 145 54 199 1.05e-28 109
Msa1027290 AT1G09480.2 36.095 169 94 5 3 164 54 215 1.14e-27 107
Msa1027290 AT1G09480.1 37.333 150 84 4 3 145 101 247 1.93e-27 107
Msa1027290 AT1G09490.2 35.503 169 95 5 3 164 23 184 3.09e-27 105
Msa1027290 AT1G66800.1 37.671 146 85 3 3 145 54 196 4.39e-27 105
Msa1027290 AT1G09510.1 38.462 169 90 5 3 164 54 215 5.73e-27 105
Msa1027290 AT1G09490.1 35.503 169 95 5 3 164 54 215 8.00e-27 104
Msa1027290 AT5G19440.1 35.028 177 100 6 3 171 56 225 1.35e-24 99.0
Msa1027290 AT1G68540.1 32.515 163 99 4 3 157 50 209 8.65e-24 96.7
Msa1027290 AT1G51410.1 32.768 177 104 5 3 171 55 224 2.98e-23 95.1
Msa1027290 AT2G02400.1 36.646 161 87 5 6 157 53 207 5.46e-23 94.4
Msa1027290 AT2G33590.1 38.514 148 80 5 3 143 54 197 1.00e-22 93.6
Msa1027290 AT2G33600.1 41.216 148 76 5 3 143 54 197 3.95e-22 92.0
Msa1027290 AT5G58490.1 35.758 165 91 6 2 157 54 212 9.12e-22 91.3
Msa1027290 AT4G27250.2 30.357 168 102 4 4 156 57 224 1.43e-21 90.9
Msa1027290 AT4G27250.1 30.357 168 102 4 4 156 57 224 1.67e-21 90.9
Msa1027290 AT1G09500.2 29.891 184 114 6 3 178 20 196 2.90e-21 89.4
Msa1027290 AT1G09500.3 30.055 183 113 6 3 177 54 229 3.15e-21 89.0
Msa1027290 AT1G09500.1 29.891 184 114 6 3 178 54 230 5.79e-21 89.0
Msa1027290 AT1G25460.1 32.164 171 102 5 3 166 49 212 2.11e-20 87.4
Msa1027290 AT1G76470.1 34.899 149 85 3 2 141 51 196 1.09e-18 82.8
Msa1027290 AT1G15950.5 35.032 157 88 5 5 155 60 208 1.67e-14 70.9
Msa1027290 AT1G15950.6 35.032 157 88 5 5 155 60 208 1.72e-14 70.5
Msa1027290 AT1G15950.4 35.032 157 88 5 5 155 60 208 1.82e-14 70.9
Msa1027290 AT1G15950.3 35.032 157 88 5 5 155 60 208 2.71e-14 70.5
Msa1027290 AT1G15950.1 35.032 157 88 5 5 155 60 208 2.71e-14 70.5
Msa1027290 AT1G15950.2 35.032 157 88 5 5 155 60 208 3.12e-14 70.5
Msa1027290 AT5G14700.2 30.496 141 71 5 18 141 119 249 7.81e-13 66.2
Msa1027290 AT5G14700.1 30.496 141 71 5 18 141 119 249 1.02e-12 66.2
Msa1027290 AT1G80820.2 34.247 146 82 5 2 141 52 189 1.12e-12 65.5
Msa1027290 AT1G80820.1 34.247 146 82 5 2 141 52 189 1.76e-12 65.5

Find 32 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATTGCTGCATTGAAACTTTC+TGG 0.125713 7_1:-59592327 None:intergenic
GAGAAGGCTGTTCTAGAGTT+TGG 0.265629 7_1:+59592636 Msa1027290:CDS
CACTGCAACTCCAATTGATT+TGG 0.296688 7_1:+59592374 Msa1027290:CDS
AGAACAATTGATGGAGCATT+AGG 0.319772 7_1:+59592429 Msa1027290:CDS
AGGGAGGTGAAGGAAATTAA+AGG 0.360048 7_1:+59594730 Msa1027290:intron
TCATTCATTTCCAAATCAAT+TGG 0.363586 7_1:-59592384 None:intergenic
ATGTAATGGATGAGAGTTAT+TGG 0.372531 7_1:+59592544 Msa1027290:CDS
ATAAAATATAGTATTAATAA+AGG 0.379878 7_1:+59594953 Msa1027290:three_prime_UTR
GATTCAGTGTTGCAAGGAAA+AGG 0.394699 7_1:+59594840 Msa1027290:CDS
TTGCTGCATTGAAACTTTCT+GGG 0.416184 7_1:-59592326 None:intergenic
CAAGTGCTTCAGCAGTGTAT+TGG 0.428274 7_1:+59592505 Msa1027290:intron
ATTGAATATGACCAAGCAAA+TGG 0.453024 7_1:-59592597 None:intergenic
AGTTTCAATGCAGCAATTGA+AGG 0.458381 7_1:+59592333 Msa1027290:CDS
GAGATTTGAAACCATTTGCT+TGG 0.459886 7_1:+59592586 Msa1027290:CDS
TTCTAAAACAATGGCAGAGA+AGG 0.467203 7_1:+59592620 Msa1027290:CDS
TTCATTTGTCCTAAGCGTCC+TGG 0.480298 7_1:+59592714 Msa1027290:CDS
TAAATTGAGCCAGGACGCTT+AGG 0.480492 7_1:-59592723 None:intergenic
ATTCAGTGTTGCAAGGAAAA+GGG 0.509113 7_1:+59594841 Msa1027290:CDS
AGGACGCTTAGGACAAATGA+AGG 0.523329 7_1:-59592712 None:intergenic
ATATTCAATTTCTAAAACAA+TGG 0.525829 7_1:+59592611 Msa1027290:CDS
AGATAAAGATGATGATGTAA+TGG 0.533409 7_1:+59592530 Msa1027290:CDS
ACACAGCCTTGAGGAAATGT+TGG 0.550570 7_1:+59594810 Msa1027290:CDS
AAGGGTCCAAGAACAAAAGT+TGG 0.557011 7_1:-59592693 None:intergenic
CTAGAGTTTGGAGAACAACA+TGG 0.574839 7_1:+59592648 Msa1027290:CDS
AGAGAGGTATAAATTGAGCC+AGG 0.580168 7_1:-59592732 None:intergenic
GCAGCAATTGAAGGATGCAA+AGG 0.592622 7_1:+59592342 Msa1027290:CDS
CGATACGATTCAGTGTTGCA+AGG 0.647384 7_1:+59594834 Msa1027290:CDS
TATCGTCCAACATTTCCTCA+AGG 0.653115 7_1:-59594816 None:intergenic
ACCAAATAACAAAGACAGAG+AGG 0.665667 7_1:-59592748 None:intergenic
AATCAATTGGAGTTGCAGTG+TGG 0.684696 7_1:-59592371 None:intergenic
GGACGCTTAGGACAAATGAA+GGG 0.710235 7_1:-59592711 None:intergenic
CGAGTTCAAACACAGCCTTG+AGG 0.724622 7_1:+59594801 Msa1027290:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAAAAAATGAAAATTCAA+AGG - chr7_1:59588624-59588643 None:intergenic 10.0%
!!! ATTTTTATCTTGTTTATTTT+GGG - chr7_1:59588835-59588854 None:intergenic 10.0%
!!! TATTTTTATCTTGTTTATTT+TGG - chr7_1:59588836-59588855 None:intergenic 10.0%
!! AAAATAAACAAGATAAAAAT+AGG + chr7_1:59588835-59588854 Msa1027290:intron 10.0%
!!! CAAATAAAACATTTTTTAAA+TGG + chr7_1:59588862-59588881 Msa1027290:intron 10.0%
!!! TTTAATTTTTATCTTTTATG+AGG - chr7_1:59589328-59589347 None:intergenic 10.0%
!!! AGATTTTTTTTTTTTAAAGA+AGG + chr7_1:59589659-59589678 Msa1027290:intron 10.0%
!!! CAAGATAAATTTTTTATTTT+TGG + chr7_1:59589797-59589816 Msa1027290:intron 10.0%
!!! ATGTAATTTCTTTAAAAAAA+TGG - chr7_1:59591783-59591802 None:intergenic 10.0%
!!! TAATTTCTAAAATACTATTT+TGG + chr7_1:59591838-59591857 Msa1027290:intron 10.0%
!!! TGTTTTTTTAATAAAAATTG+GGG + chr7_1:59592825-59592844 Msa1027290:intron 10.0%
!! TCAATATAAATTGATATATT+TGG + chr7_1:59593008-59593027 Msa1027290:intron 10.0%
!! TTAATTTATTCATAAGGAAA+TGG - chr7_1:59588589-59588608 None:intergenic 15.0%
!!! ATTTTTCTTTTTATTATTGG+AGG - chr7_1:59588697-59588716 None:intergenic 15.0%
!!! AAAACATTTTTTAAATGGAT+TGG + chr7_1:59588867-59588886 Msa1027290:intron 15.0%
!! AAATGATGAAAAATATGTTT+AGG + chr7_1:59589559-59589578 Msa1027290:intron 15.0%
!!! TTTTTTTTTAAAGAAGGTTA+AGG + chr7_1:59589665-59589684 Msa1027290:intron 15.0%
!!! TTTTTTTTTGTACAAAAAGA+GGG + chr7_1:59589984-59590003 Msa1027290:intron 15.0%
!!! ATTATTTTATCCATTTAGTA+GGG + chr7_1:59590148-59590167 Msa1027290:intron 15.0%
!!! TTCATTGAATTTTTATCTTA+TGG - chr7_1:59591252-59591271 None:intergenic 15.0%
!!! AATGTTACTACTAATTTTTT+TGG - chr7_1:59591699-59591718 None:intergenic 15.0%
!!! ATATTCAATTTCTAAAACAA+TGG + chr7_1:59592611-59592630 Msa1027290:CDS 15.0%
!! TATTATTAGTGAAAAGATTA+TGG - chr7_1:59593396-59593415 None:intergenic 15.0%
!! AAATAAGTCATAAAATATAG+TGG - chr7_1:59593578-59593597 None:intergenic 15.0%
!!! TTATTTTAGAAATCATAGTT+AGG + chr7_1:59593592-59593611 Msa1027290:intron 15.0%
!! TGTGTTTATAAATTATAAGT+GGG - chr7_1:59593887-59593906 None:intergenic 15.0%
!! ATGTGTTTATAAATTATAAG+TGG - chr7_1:59593888-59593907 None:intergenic 15.0%
!!! TGCATAAATTAATTTTCTAA+AGG - chr7_1:59594222-59594241 None:intergenic 15.0%
!!! ATACCAATAAATTCATTTTT+AGG + chr7_1:59594364-59594383 Msa1027290:intron 15.0%
!!! TATTTATTCATTTTGTTCAT+AGG + chr7_1:59594710-59594729 Msa1027290:intron 15.0%
!!! ATTTATTCATTTTGTTCATA+GGG + chr7_1:59594711-59594730 Msa1027290:intron 15.0%
!!! TTTTTTTTTTTTTGGTTACA+AGG + chr7_1:59594877-59594896 Msa1027290:three_prime_UTR 15.0%
!! AAATTAGAAGTAGAAGAAAA+AGG + chr7_1:59588265-59588284 Msa1027290:intron 20.0%
!!! ACATTTTAAATATAGAGATG+AGG + chr7_1:59588497-59588516 Msa1027290:intron 20.0%
!! TTTAATATAATGTGCAGAAA+TGG + chr7_1:59588800-59588819 Msa1027290:intron 20.0%
!! AAATGTTGAAAGATATGTTT+AGG + chr7_1:59589091-59589110 Msa1027290:intron 20.0%
!!! AAATCTGTTTTACAAGTTAA+AGG + chr7_1:59589359-59589378 Msa1027290:intron 20.0%
!!! TCACTTTCTTTGTAAAATTT+TGG + chr7_1:59589944-59589963 Msa1027290:intron 20.0%
!!! CTTTTTTTTTGTACAAAAAG+AGG + chr7_1:59589983-59590002 Msa1027290:intron 20.0%
!!! GTTTTCTTTTTCTTTTTCTT+GGG - chr7_1:59590015-59590034 None:intergenic 20.0%
!!! AGTTTTCTTTTTCTTTTTCT+TGG - chr7_1:59590016-59590035 None:intergenic 20.0%
!! TCATTTAAATGACAATTTCT+GGG - chr7_1:59590072-59590091 None:intergenic 20.0%
!! TTCATTTAAATGACAATTTC+TGG - chr7_1:59590073-59590092 None:intergenic 20.0%
!!! CATTATTTTATCCATTTAGT+AGG + chr7_1:59590147-59590166 Msa1027290:intron 20.0%
!!! TCAATTTTCTTACATTTTGT+TGG - chr7_1:59590190-59590209 None:intergenic 20.0%
!!! ATAAAACTGAAACGTATTTT+CGG - chr7_1:59590722-59590741 None:intergenic 20.0%
!! AAAAAAACATAGTCCAAAAT+CGG + chr7_1:59590810-59590829 Msa1027290:intron 20.0%
!!! TTCCAATTTCTTCAATTTTA+AGG + chr7_1:59590876-59590895 Msa1027290:intron 20.0%
!!! TTCTAGTAACAATTTTGTTT+TGG + chr7_1:59591136-59591155 Msa1027290:intron 20.0%
!!! ATTGAATTTTTATCTTATGG+TGG - chr7_1:59591249-59591268 None:intergenic 20.0%
!!! AGGACATTTGAATAATTTTT+GGG + chr7_1:59591532-59591551 Msa1027290:intron 20.0%
!! GATATTTATTCTAGTAGAAA+AGG + chr7_1:59591900-59591919 Msa1027290:intron 20.0%
!!! ATTGAAGAATTTTAGCTTTT+GGG - chr7_1:59592292-59592311 None:intergenic 20.0%
!! AATATAGTCAGAAGAAAAAA+AGG - chr7_1:59592796-59592815 None:intergenic 20.0%
!!! AACTAATGATCATTTTTCAA+CGG + chr7_1:59592876-59592895 Msa1027290:intron 20.0%
!! CCTAAAATATAAGCAAAAAT+TGG - chr7_1:59593070-59593089 None:intergenic 20.0%
!!! CCAATTTTTGCTTATATTTT+AGG + chr7_1:59593067-59593086 Msa1027290:intron 20.0%
!!! TTTTTGCTTATATTTTAGGA+CGG + chr7_1:59593071-59593090 Msa1027290:intron 20.0%
!!! ATGGCAATACTTTTTTTTAA+CGG - chr7_1:59594299-59594318 None:intergenic 20.0%
!! TTCTACATATTAGTTAGATT+GGG - chr7_1:59594334-59594353 None:intergenic 20.0%
!! ATTCTACATATTAGTTAGAT+TGG - chr7_1:59594335-59594354 None:intergenic 20.0%
!! ATGCCTAAAAATGAATTTAT+TGG - chr7_1:59594370-59594389 None:intergenic 20.0%
!! TGCTAATTAAGAATAGAAAA+TGG + chr7_1:59594412-59594431 Msa1027290:intron 20.0%
!! TAAATACTAGTTACAGTAAA+AGG - chr7_1:59594696-59594715 None:intergenic 20.0%
! TAATATTGAATTTGTGTGTG+TGG + chr7_1:59588149-59588168 Msa1027290:intron 25.0%
! AATATTGAATTTGTGTGTGT+GGG + chr7_1:59588150-59588169 Msa1027290:intron 25.0%
!! ATCTCTCTTTTATATACAGT+CGG - chr7_1:59588202-59588221 None:intergenic 25.0%
!! TCTTCTACTTCTAATTTTGT+TGG - chr7_1:59588262-59588281 None:intergenic 25.0%
! AAAAAAACTTATTACTGACC+TGG - chr7_1:59588445-59588464 None:intergenic 25.0%
!! AAATATAGAGATGAGGTATT+TGG + chr7_1:59588504-59588523 Msa1027290:intron 25.0%
!! AATATAGAGATGAGGTATTT+GGG + chr7_1:59588505-59588524 Msa1027290:intron 25.0%
! ACATCGTTTAATATATGTAG+GGG - chr7_1:59588543-59588562 None:intergenic 25.0%
! GACATCGTTTAATATATGTA+GGG - chr7_1:59588544-59588563 None:intergenic 25.0%
! AGACATCGTTTAATATATGT+AGG - chr7_1:59588545-59588564 None:intergenic 25.0%
!!! ACACTCCTACATTATTTTTA+GGG - chr7_1:59588759-59588778 None:intergenic 25.0%
!!! AACACTCCTACATTATTTTT+AGG - chr7_1:59588760-59588779 None:intergenic 25.0%
!! TTTGGATATGTTTTCACTTT+AGG - chr7_1:59588907-59588926 None:intergenic 25.0%
!! AATATGGCTAACTTTTTGTT+TGG - chr7_1:59588925-59588944 None:intergenic 25.0%
!! ATCTTTTATGAGGCTTAAAA+TGG - chr7_1:59589318-59589337 None:intergenic 25.0%
! TATATAGTATGTGTTTGGTT+TGG - chr7_1:59589530-59589549 None:intergenic 25.0%
! CTATCTATATAGTATGTGTT+TGG - chr7_1:59589535-59589554 None:intergenic 25.0%
! AAAAAGATGTAGAGATTAAG+AGG + chr7_1:59589630-59589649 Msa1027290:intron 25.0%
! AGTTGTTTAATCAATGTATG+TGG - chr7_1:59589709-59589728 None:intergenic 25.0%
! GTTCAAATATCATTTCTCTT+AGG - chr7_1:59589876-59589895 None:intergenic 25.0%
! CATTTAAATGACAATTTCTG+GGG - chr7_1:59590071-59590090 None:intergenic 25.0%
!! AATGATAGAATGTTTTATCG+CGG - chr7_1:59590131-59590150 None:intergenic 25.0%
! TTACTCATCATATAGTGAAA+CGG - chr7_1:59590419-59590438 None:intergenic 25.0%
! GTTACAAAAGAGATATCAAT+GGG + chr7_1:59590440-59590459 Msa1027290:intron 25.0%
! AAAAGAATCCTCAATAAAAC+TGG + chr7_1:59590683-59590702 Msa1027290:intron 25.0%
! AATAAAACTGGAACAAATCT+AGG + chr7_1:59590695-59590714 Msa1027290:intron 25.0%
!! TAAAACTGAAACGTATTTTC+GGG - chr7_1:59590721-59590740 None:intergenic 25.0%
!! TTATTTTCTGCTGTCAAAAT+CGG + chr7_1:59590738-59590757 Msa1027290:intron 25.0%
!!! ACTATGTTTTTTTTGTCTGT+TGG - chr7_1:59590803-59590822 None:intergenic 25.0%
! AATTGAAGAAATTGGAATTC+TGG - chr7_1:59590873-59590892 None:intergenic 25.0%
! TGCCTTAAAATTGAAGAAAT+TGG - chr7_1:59590881-59590900 None:intergenic 25.0%
!! CATTTTCATGTATACATGTT+TGG - chr7_1:59591016-59591035 None:intergenic 25.0%
!!! GTAACAATTTTGTTTTGGTT+TGG + chr7_1:59591141-59591160 Msa1027290:intron 25.0%
! TCAAAGATTGGATTTGAAAA+AGG - chr7_1:59591360-59591379 None:intergenic 25.0%
! AATTATTCAAATGTCCTCAT+CGG - chr7_1:59591529-59591548 None:intergenic 25.0%
!! GAGGACATTTGAATAATTTT+TGG + chr7_1:59591531-59591550 Msa1027290:intron 25.0%
! TCTTACAACATAACAAATCA+AGG + chr7_1:59591929-59591948 Msa1027290:intron 25.0%
!! AACACAATTTTATTGCTTGT+TGG - chr7_1:59592213-59592232 None:intergenic 25.0%
!!! CATTGAAGAATTTTAGCTTT+TGG - chr7_1:59592293-59592312 None:intergenic 25.0%
! TCATTCATTTCCAAATCAAT+TGG - chr7_1:59592387-59592406 None:intergenic 25.0%
!! AGATAAAGATGATGATGTAA+TGG + chr7_1:59592530-59592549 Msa1027290:CDS 25.0%
!! ATAATACCAACTTTTGTTCT+TGG + chr7_1:59592687-59592706 Msa1027290:CDS 25.0%
! TTTAATAAAAATTGGGGAAG+AGG + chr7_1:59592831-59592850 Msa1027290:intron 25.0%
! GAAGCTATTGTTTATAAATG+TGG + chr7_1:59592853-59592872 Msa1027290:intron 25.0%
! TGACTTTATAACCTCAAAAA+TGG - chr7_1:59592922-59592941 None:intergenic 25.0%
!!! TTTTTGCTTACATTTTGGAA+CGG - chr7_1:59592984-59593003 None:intergenic 25.0%
!!! ACTCATTTTTGCTTACATTT+TGG - chr7_1:59592989-59593008 None:intergenic 25.0%
!!! TTTTGCTTATATTTTAGGAC+GGG + chr7_1:59593072-59593091 Msa1027290:intron 25.0%
!! AAAAACCATCAAATTAGCTT+TGG + chr7_1:59593130-59593149 Msa1027290:intron 25.0%
!!! AATTTAGCTTGTTGTTCTAA+CGG + chr7_1:59593510-59593529 Msa1027290:intron 25.0%
! AACAATATGTTTATAAGTGG+AGG - chr7_1:59593650-59593669 None:intergenic 25.0%
! CCTAACAATATGTTTATAAG+TGG - chr7_1:59593653-59593672 None:intergenic 25.0%
! CCACTTATAAACATATTGTT+AGG + chr7_1:59593650-59593669 Msa1027290:intron 25.0%
!!! AGTTGTTAAAAGTGTCAAAT+CGG - chr7_1:59593929-59593948 None:intergenic 25.0%
!! TATTTTGTCAGTATTGTGTT+GGG - chr7_1:59594132-59594151 None:intergenic 25.0%
!! ATATTTTGTCAGTATTGTGT+TGG - chr7_1:59594133-59594152 None:intergenic 25.0%
! AGGAAACTAAGATTCATTTA+AGG - chr7_1:59594202-59594221 None:intergenic 25.0%
! AATTAATTTATGCAGTTGTG+TGG + chr7_1:59594228-59594247 Msa1027290:intron 25.0%
! CTAATATGTAGAATTCACAA+TGG + chr7_1:59594341-59594360 Msa1027290:intron 25.0%
!! CATTTTTACAATGAAACTAG+AGG - chr7_1:59594394-59594413 None:intergenic 25.0%
! AATAGAAAATGGATGTTGTA+GGG + chr7_1:59594423-59594442 Msa1027290:intron 25.0%
! TTCTTCATTATTGCAATGAA+TGG - chr7_1:59594562-59594581 None:intergenic 25.0%
!! TATATGAAATTCAGGGTATT+TGG - chr7_1:59594604-59594623 None:intergenic 25.0%
!!! AGTTTTTTTGAGGTTAAATG+TGG - chr7_1:59594766-59594785 None:intergenic 25.0%
! TTTAACCTCAAAAAAACTCA+TGG + chr7_1:59594768-59594787 Msa1027290:CDS 25.0%
ATATTGAATTTGTGTGTGTG+GGG + chr7_1:59588151-59588170 Msa1027290:intron 30.0%
GTCATAATAGTACACGAAAA+AGG + chr7_1:59588173-59588192 Msa1027290:intron 30.0%
TGTAGTGTACACTAAGAATA+AGG + chr7_1:59588231-59588250 Msa1027290:intron 30.0%
AAAGATTAAGCAAACCACAA+AGG + chr7_1:59588290-59588309 Msa1027290:intron 30.0%
ATTAAGAGACTTCTTGAAGA+TGG + chr7_1:59588388-59588407 Msa1027290:intron 30.0%
! ATATAGAGATGAGGTATTTG+GGG + chr7_1:59588506-59588525 Msa1027290:intron 30.0%
! TCACTTTAGGAACTCAAAAT+TGG - chr7_1:59588894-59588913 None:intergenic 30.0%
TAGCCATATTGTTGACAAAA+AGG + chr7_1:59588935-59588954 Msa1027290:intron 30.0%
! ACACCTTTTTGTCAACAATA+TGG - chr7_1:59588941-59588960 None:intergenic 30.0%
AAAATTAGAGAGAGTTTGAG+TGG + chr7_1:59589054-59589073 Msa1027290:intron 30.0%
AAATTAGAGAGAGTTTGAGT+GGG + chr7_1:59589055-59589074 Msa1027290:intron 30.0%
TAGACAATATACACTGTGTT+TGG + chr7_1:59589119-59589138 Msa1027290:intron 30.0%
AGCAATGTGAGAAAGAAATA+GGG + chr7_1:59589165-59589184 Msa1027290:intron 30.0%
AGAGAAAGACTAAAAGTTGA+TGG + chr7_1:59589232-59589251 Msa1027290:intron 30.0%
! GAGAAAGACTAAAAGTTGAT+GGG + chr7_1:59589233-59589252 Msa1027290:intron 30.0%
!! TGGAGAGATTGATTTTTATG+TGG - chr7_1:59589261-59589280 None:intergenic 30.0%
TATGAGAAGAGAGAAAAAGA+TGG - chr7_1:59589470-59589489 None:intergenic 30.0%
TTAGACATAGAGAGAAGATA+CGG + chr7_1:59589586-59589605 Msa1027290:intron 30.0%
TTACTTTCTCTCTATTGCTT+TGG + chr7_1:59589905-59589924 Msa1027290:intron 30.0%
AGCGATTAATCAAACATTCT+AGG + chr7_1:59590037-59590056 Msa1027290:intron 30.0%
!! TGTTCCATACACTTTGATTT+TGG - chr7_1:59590286-59590305 None:intergenic 30.0%
CGTTACAAAAGAGATATCAA+TGG + chr7_1:59590439-59590458 Msa1027290:intron 30.0%
TTTGTATAGAGTTTGTCTCT+TGG - chr7_1:59590584-59590603 None:intergenic 30.0%
AGGGTTTAGAAATCAAACTA+GGG - chr7_1:59590607-59590626 None:intergenic 30.0%
AAGGGTTTAGAAATCAAACT+AGG - chr7_1:59590608-59590627 None:intergenic 30.0%
!!! GATTTGTTCCAGTTTTATTG+AGG - chr7_1:59590694-59590713 None:intergenic 30.0%
!! TCTGTTGGTTCTGTAAAAAT+CGG - chr7_1:59590788-59590807 None:intergenic 30.0%
TCATGTATACATGTTTGGAT+CGG - chr7_1:59591011-59591030 None:intergenic 30.0%
TTCTCACATCTTATGACAAA+CGG + chr7_1:59591069-59591088 Msa1027290:intron 30.0%
!! AAGGATTTTTCAGATCTGTT+TGG + chr7_1:59591094-59591113 Msa1027290:intron 30.0%
! ATGAGTGAACTTTTGTTAGA+TGG + chr7_1:59591282-59591301 Msa1027290:intron 30.0%
TGTGTAGCATAAAATCTGAA+GGG - chr7_1:59591419-59591438 None:intergenic 30.0%
TGTGTTAGAGATTGAACATA+GGG - chr7_1:59591606-59591625 None:intergenic 30.0%
CTAGAATAAATATCTGTCGA+TGG - chr7_1:59591894-59591913 None:intergenic 30.0%
AACTCCAGGGAAAAAAATTA+TGG + chr7_1:59592012-59592031 Msa1027290:intron 30.0%
!!! TCTTCCATAATTTTTTTCCC+TGG - chr7_1:59592019-59592038 None:intergenic 30.0%
ACTAGTTAGAGATGTCATAA+TGG - chr7_1:59592053-59592072 None:intergenic 30.0%
GTGACAAAAAGAACAATTGA+TGG + chr7_1:59592420-59592439 Msa1027290:CDS 30.0%
!! ATGTAATGGATGAGAGTTAT+TGG + chr7_1:59592544-59592563 Msa1027290:CDS 30.0%
ATTGAATATGACCAAGCAAA+TGG - chr7_1:59592600-59592619 None:intergenic 30.0%
!! ATTTTTCAACGGACTCAAAT+GGG + chr7_1:59592887-59592906 Msa1027290:intron 30.0%
!!! TTTTGCTTACATTTTGGAAC+GGG - chr7_1:59592983-59593002 None:intergenic 30.0%
!!! TTTGCTTATATTTTAGGACG+GGG + chr7_1:59593073-59593092 Msa1027290:intron 30.0%
CATTTCCAAAGCTAATTTGA+TGG - chr7_1:59593138-59593157 None:intergenic 30.0%
AAAGAGAGAGAGAGATAAAT+TGG + chr7_1:59593158-59593177 Msa1027290:intron 30.0%
TGTTAGTGTATCTAATTGTG+TGG + chr7_1:59593188-59593207 Msa1027290:intron 30.0%
TGTATCTAATTGTGTGGATT+AGG + chr7_1:59593194-59593213 Msa1027290:intron 30.0%
! GTATCTAATTGTGTGGATTA+GGG + chr7_1:59593195-59593214 Msa1027290:intron 30.0%
TGTTGAGTATGATGACTTAT+AGG + chr7_1:59593248-59593267 Msa1027290:intron 30.0%
! AATGTTTGGCTCAAGTTTAA+GGG - chr7_1:59593320-59593339 None:intergenic 30.0%
! AAATGTTTGGCTCAAGTTTA+AGG - chr7_1:59593321-59593340 None:intergenic 30.0%
!! AGATGTTTGATAGTGAAGTT+GGG - chr7_1:59593451-59593470 None:intergenic 30.0%
!! AAGATGTTTGATAGTGAAGT+TGG - chr7_1:59593452-59593471 None:intergenic 30.0%
!!! GTTTTGTTTGTGGACATAAA+TGG + chr7_1:59593730-59593749 Msa1027290:intron 30.0%
!! TTAAAAGTGTCAAATCGGAT+AGG - chr7_1:59593924-59593943 None:intergenic 30.0%
AAATATTTGTCGGAAGATGT+CGG + chr7_1:59594174-59594193 Msa1027290:intron 30.0%
GATTGGGAAAATCAAAGTAA+TGG - chr7_1:59594318-59594337 None:intergenic 30.0%
GAATAGAAAATGGATGTTGT+AGG + chr7_1:59594422-59594441 Msa1027290:intron 30.0%
ATAGAAAATGGATGTTGTAG+GGG + chr7_1:59594424-59594443 Msa1027290:intron 30.0%
ATTATATCTCCCTTTGGATT+AGG - chr7_1:59594533-59594552 None:intergenic 30.0%
! GTGTTGGTATATGAAATTCA+GGG - chr7_1:59594611-59594630 None:intergenic 30.0%
!! AGTGTTGGTATATGAAATTC+AGG - chr7_1:59594612-59594631 None:intergenic 30.0%
! TATTCATTTTGTTCATAGGG+AGG + chr7_1:59594714-59594733 Msa1027290:intron 30.0%
!!! TTTTTGGTTACAAGGCTAAA+AGG + chr7_1:59594885-59594904 Msa1027290:three_prime_UTR 30.0%
!! TTTTGGTTACAAGGCTAAAA+GGG + chr7_1:59594886-59594905 Msa1027290:three_prime_UTR 30.0%
CGTTTAATATATGTAGGGGA+TGG - chr7_1:59588539-59588558 None:intergenic 35.0%
AATGGAGTTCGAAGATCAAT+TGG - chr7_1:59588571-59588590 None:intergenic 35.0%
!!! CTACATTATTTTTAGGGCTG+AGG - chr7_1:59588753-59588772 None:intergenic 35.0%
CTCAGCCCTAAAAATAATGT+AGG + chr7_1:59588751-59588770 Msa1027290:intron 35.0%
CAACGAACTAAGACATGAAT+CGG - chr7_1:59588999-59589018 None:intergenic 35.0%
! GTTTGGAACAAGAGAAATAG+AGG + chr7_1:59589136-59589155 Msa1027290:intron 35.0%
GAGCAATGTGAGAAAGAAAT+AGG + chr7_1:59589164-59589183 Msa1027290:intron 35.0%
AATCAATCTCTCCATTGATG+TGG + chr7_1:59589267-59589286 Msa1027290:intron 35.0%
GGCTTAAAATGGAAAACCAT+AGG - chr7_1:59589307-59589326 None:intergenic 35.0%
GGATTCTTTAATCAGTGTCT+TGG + chr7_1:59589818-59589837 Msa1027290:intron 35.0%
ACCAATAACAACTTGATGTG+TGG + chr7_1:59590241-59590260 Msa1027290:intron 35.0%
! TCCACACATCAAGTTGTTAT+TGG - chr7_1:59590245-59590264 None:intergenic 35.0%
GCAACCAAAATCAAAGTGTA+TGG + chr7_1:59590279-59590298 Msa1027290:intron 35.0%
AGCCAAAAGTAGAAAACAAC+AGG + chr7_1:59590314-59590333 Msa1027290:intron 35.0%
!!! CTCCTGTTGTTTTCTACTTT+TGG - chr7_1:59590319-59590338 None:intergenic 35.0%
TCATCATATAGTGAAACGGA+GGG - chr7_1:59590415-59590434 None:intergenic 35.0%
ACTATTAGGATTGAGTCTCT+TGG - chr7_1:59590521-59590540 None:intergenic 35.0%
AATCCTAATAGTGTTTCCCA+AGG + chr7_1:59590529-59590548 Msa1027290:intron 35.0%
! TTTGAAGGTTGATTCACCTT+GGG - chr7_1:59590548-59590567 None:intergenic 35.0%
ACATTGTATCAGTGTAAACC+TGG - chr7_1:59590650-59590669 None:intergenic 35.0%
! GGGGCATTTGAGTAATTATT+GGG - chr7_1:59590944-59590963 None:intergenic 35.0%
! TGGGGCATTTGAGTAATTAT+TGG - chr7_1:59590945-59590964 None:intergenic 35.0%
! TGTGAGAATTTTTCTCTCCA+GGG - chr7_1:59591057-59591076 None:intergenic 35.0%
! ATGTGAGAATTTTTCTCTCC+AGG - chr7_1:59591058-59591077 None:intergenic 35.0%
!!! TTTTGTTTTGGTTTGGCTTG+TGG + chr7_1:59591148-59591167 Msa1027290:intron 35.0%
! AACTTTTGTTAGATGGCTGT+TGG + chr7_1:59591289-59591308 Msa1027290:intron 35.0%
CTGTGTAGCATAAAATCTGA+AGG - chr7_1:59591420-59591439 None:intergenic 35.0%
! GTTTTTCATGTGCACATGTT+TGG + chr7_1:59591458-59591477 Msa1027290:intron 35.0%
GTGTGTTAGAGATTGAACAT+AGG - chr7_1:59591607-59591626 None:intergenic 35.0%
TGCCAAATATGATTAACTCC+AGG + chr7_1:59591998-59592017 Msa1027290:intron 35.0%
GCCAAATATGATTAACTCCA+GGG + chr7_1:59591999-59592018 Msa1027290:intron 35.0%
TCCCTGGAGTTAATCATATT+TGG - chr7_1:59592003-59592022 None:intergenic 35.0%
CTTGTTGGTCAAGTATACAT+TGG - chr7_1:59592198-59592217 None:intergenic 35.0%
TTGCTGCATTGAAACTTTCT+GGG - chr7_1:59592329-59592348 None:intergenic 35.0%
ATTGCTGCATTGAAACTTTC+TGG - chr7_1:59592330-59592349 None:intergenic 35.0%
AGTTTCAATGCAGCAATTGA+AGG + chr7_1:59592333-59592352 Msa1027290:CDS 35.0%
! AGAACAATTGATGGAGCATT+AGG + chr7_1:59592429-59592448 Msa1027290:CDS 35.0%
! GAGATTTGAAACCATTTGCT+TGG + chr7_1:59592586-59592605 Msa1027290:CDS 35.0%
!! TTCTAAAACAATGGCAGAGA+AGG + chr7_1:59592620-59592639 Msa1027290:CDS 35.0%
!! ACCTCTCTGTCTTTGTTATT+TGG + chr7_1:59592747-59592766 Msa1027290:intron 35.0%
ACCAAATAACAAAGACAGAG+AGG - chr7_1:59592751-59592770 None:intergenic 35.0%
!! CATTTTTCAACGGACTCAAA+TGG + chr7_1:59592886-59592905 Msa1027290:intron 35.0%
!! GGATTTGAACTCCATTTTTG+AGG + chr7_1:59592908-59592927 Msa1027290:intron 35.0%
TGCATTAGATGTCAACTTAG+TGG - chr7_1:59592953-59592972 None:intergenic 35.0%
!!! TTTGCTTACATTTTGGAACG+GGG - chr7_1:59592982-59593001 None:intergenic 35.0%
!!! TTGCTTATATTTTAGGACGG+GGG + chr7_1:59593074-59593093 Msa1027290:intron 35.0%
!! ACTTATAGGTACTGAGAAGT+GGG + chr7_1:59593262-59593281 Msa1027290:intron 35.0%
!! TTGAGCCAAACATTTGTTGT+GGG + chr7_1:59593326-59593345 Msa1027290:intron 35.0%
CAGTTCAATGATGCTATAGT+TGG + chr7_1:59593369-59593388 Msa1027290:intron 35.0%
!!! GTGTTTTAAGAGTCTCACAT+CGG - chr7_1:59593687-59593706 None:intergenic 35.0%
CAAACAAAACCCAATAGTGT+TGG - chr7_1:59593720-59593739 None:intergenic 35.0%
!!! ACACTATTGGGTTTTGTTTG+TGG + chr7_1:59593720-59593739 Msa1027290:intron 35.0%
TTGTTTGTGGACATAAATGG+TGG + chr7_1:59593733-59593752 Msa1027290:intron 35.0%
TGTTTGTGGACATAAATGGT+GGG + chr7_1:59593734-59593753 Msa1027290:intron 35.0%
AGAGTCTCTTCAAAATCCAT+CGG - chr7_1:59593793-59593812 None:intergenic 35.0%
TGATACCATCTTAGAAATCG+TGG + chr7_1:59593812-59593831 Msa1027290:intron 35.0%
!! ATCACATAAGTCGGTTTTGT+GGG - chr7_1:59593854-59593873 None:intergenic 35.0%
GCAATACTCATCACATAAGT+CGG - chr7_1:59593863-59593882 None:intergenic 35.0%
AACCTCATCAAAATTGCAAC+TGG + chr7_1:59593953-59593972 Msa1027290:intron 35.0%
!! AACCAGTTGCAATTTTGATG+AGG - chr7_1:59593958-59593977 None:intergenic 35.0%
CAAAATTGCAACTGGTTGAT+TGG + chr7_1:59593961-59593980 Msa1027290:intron 35.0%
AATATTTGTCGGAAGATGTC+GGG + chr7_1:59594175-59594194 Msa1027290:intron 35.0%
GTTGTGTGGAAGAATACATT+TGG + chr7_1:59594242-59594261 Msa1027290:intron 35.0%
TATCATCAACATGCACCATA+TGG - chr7_1:59594478-59594497 None:intergenic 35.0%
TGAGCAATTATATCTCCCTT+TGG - chr7_1:59594539-59594558 None:intergenic 35.0%
!!! AGCATCCATGAGTTTTTTTG+AGG - chr7_1:59594776-59594795 None:intergenic 35.0%
TCAAAAAAACTCATGGATGC+TGG + chr7_1:59594775-59594794 Msa1027290:CDS 35.0%
ATTCAGTGTTGCAAGGAAAA+GGG + chr7_1:59594841-59594860 Msa1027290:CDS 35.0%
ATTACCACACTCTTCCTTTG+TGG - chr7_1:59588307-59588326 None:intergenic 40.0%
! ACAAAGGAAGAGTGTGGTAA+TGG + chr7_1:59588306-59588325 Msa1027290:intron 40.0%
!! GTGGTAATGGAAGAAGAGAA+AGG + chr7_1:59588319-59588338 Msa1027290:intron 40.0%
AAAGGAAGAGTTTGTGTGAC+TGG + chr7_1:59588337-59588356 Msa1027290:intron 40.0%
AGACATGAATCGGCATTTGT+TGG - chr7_1:59588989-59589008 None:intergenic 40.0%
CGATTCATGTCTTAGTTCGT+TGG + chr7_1:59588997-59589016 Msa1027290:intron 40.0%
GAGAGTAAAGCCATTGTGTA+TGG + chr7_1:59589192-59589211 Msa1027290:intron 40.0%
CTCTCTTGTTCCATACACAA+TGG - chr7_1:59589205-59589224 None:intergenic 40.0%
AAGCTCTTTCTCCACATCAA+TGG - chr7_1:59589281-59589300 None:intergenic 40.0%
GAAGTTGAGAAGAGAGAAGT+AGG - chr7_1:59589503-59589522 None:intergenic 40.0%
AATCAGTGTCTTGGAGACAT+TGG + chr7_1:59589827-59589846 Msa1027290:intron 40.0%
GCAACAACAACCCTACTAAA+TGG - chr7_1:59590161-59590180 None:intergenic 40.0%
AGGTCAATTTGGATCGAACT+GGG - chr7_1:59590374-59590393 None:intergenic 40.0%
TAGGTCAATTTGGATCGAAC+TGG - chr7_1:59590375-59590394 None:intergenic 40.0%
GATCCAAATTGACCTAGTCT+GGG + chr7_1:59590379-59590398 Msa1027290:intron 40.0%
ATCCAAATTGACCTAGTCTG+GGG + chr7_1:59590380-59590399 Msa1027290:intron 40.0%
CTCATCATATAGTGAAACGG+AGG - chr7_1:59590416-59590435 None:intergenic 40.0%
GTTGGGATTTGGGTAGAATT+AGG - chr7_1:59590486-59590505 None:intergenic 40.0%
AGGATTGAGTCTCTTGGTTA+CGG - chr7_1:59590515-59590534 None:intergenic 40.0%
TCACCTTGGGAAACACTATT+AGG - chr7_1:59590535-59590554 None:intergenic 40.0%
! GTTTGAAGGTTGATTCACCT+TGG - chr7_1:59590549-59590568 None:intergenic 40.0%
TGTCTCTTGGCAACAAACTA+GGG - chr7_1:59590571-59590590 None:intergenic 40.0%
TTGTCTCTTGGCAACAAACT+AGG - chr7_1:59590572-59590591 None:intergenic 40.0%
TGTAAACCTGGAGATAGAAG+GGG - chr7_1:59590638-59590657 None:intergenic 40.0%
GTGTAAACCTGGAGATAGAA+GGG - chr7_1:59590639-59590658 None:intergenic 40.0%
AGTGTAAACCTGGAGATAGA+AGG - chr7_1:59590640-59590659 None:intergenic 40.0%
!! GTTGGTTCTGTAAAAATCGG+TGG - chr7_1:59590785-59590804 None:intergenic 40.0%
! ATTCTGGAAGTTGAAAACCG+TGG - chr7_1:59590857-59590876 None:intergenic 40.0%
CATCTTATGACAAACGGACA+AGG + chr7_1:59591075-59591094 Msa1027290:intron 40.0%
TAGAAGAAGCAAACCCATCA+TGG + chr7_1:59591180-59591199 Msa1027290:intron 40.0%
AGAAGAAGCAAACCCATCAT+GGG + chr7_1:59591181-59591200 Msa1027290:intron 40.0%
! TTATGGTGGAGCTTCTATCA+TGG - chr7_1:59591235-59591254 None:intergenic 40.0%
TTTGTTAGATGGCTGTTGGT+TGG + chr7_1:59591293-59591312 Msa1027290:intron 40.0%
GAGAATGAAGGGTCAAAGAT+TGG - chr7_1:59591372-59591391 None:intergenic 40.0%
GTGCACATGAAAAACTCCAT+CGG - chr7_1:59591453-59591472 None:intergenic 40.0%
TCATGTGCACATGTTTGGAT+TGG + chr7_1:59591463-59591482 Msa1027290:intron 40.0%
GTTGGTCAAGTATACATTGG+AGG - chr7_1:59592195-59592214 None:intergenic 40.0%
AATCAATTGGAGTTGCAGTG+TGG - chr7_1:59592374-59592393 None:intergenic 40.0%
CACTGCAACTCCAATTGATT+TGG + chr7_1:59592374-59592393 Msa1027290:CDS 40.0%
CTAGAGTTTGGAGAACAACA+TGG + chr7_1:59592648-59592667 Msa1027290:CDS 40.0%
AAGGGTCCAAGAACAAAAGT+TGG - chr7_1:59592696-59592715 None:intergenic 40.0%
! AGAGAGGTATAAATTGAGCC+AGG - chr7_1:59592735-59592754 None:intergenic 40.0%
!!! TTGCTTACATTTTGGAACGG+GGG - chr7_1:59592981-59593000 None:intergenic 40.0%
TAGGGATCAGTTGGTCAATT+AGG + chr7_1:59593213-59593232 Msa1027290:intron 40.0%
!! GACTTATAGGTACTGAGAAG+TGG + chr7_1:59593261-59593280 Msa1027290:intron 40.0%
! CTTGAGCCAAACATTTGTTG+TGG + chr7_1:59593325-59593344 Msa1027290:intron 40.0%
!! TGAGCCAAACATTTGTTGTG+GGG + chr7_1:59593327-59593346 Msa1027290:intron 40.0%
TTAAGAGTCTCACATCGGAT+AGG - chr7_1:59593682-59593701 None:intergenic 40.0%
GAGTCTCTTCAAAATCCATC+GGG - chr7_1:59593792-59593811 None:intergenic 40.0%
! CCTAACCACGATTTCTAAGA+TGG - chr7_1:59593820-59593839 None:intergenic 40.0%
CCATCTTAGAAATCGTGGTT+AGG + chr7_1:59593817-59593836 Msa1027290:intron 40.0%
!! CATCACATAAGTCGGTTTTG+TGG - chr7_1:59593855-59593874 None:intergenic 40.0%
CTTGAGCATCCTAATCCAAA+GGG + chr7_1:59594521-59594540 Msa1027290:intron 40.0%
ACTAGAACTCACTCTAGTGT+TGG - chr7_1:59594627-59594646 None:intergenic 40.0%
! TTTTGTTCATAGGGAGGTGA+AGG + chr7_1:59594720-59594739 Msa1027290:intron 40.0%
AGGGAGGTGAAGGAAATTAA+AGG + chr7_1:59594730-59594749 Msa1027290:intron 40.0%
TATCGTCCAACATTTCCTCA+AGG - chr7_1:59594819-59594838 None:intergenic 40.0%
GATTCAGTGTTGCAAGGAAA+AGG + chr7_1:59594840-59594859 Msa1027290:CDS 40.0%
CAAACCACAAAGGAAGAGTG+TGG + chr7_1:59588300-59588319 Msa1027290:intron 45.0%
! TTTGTGTGACTGGAGGTACA+GGG + chr7_1:59588347-59588366 Msa1027290:intron 45.0%
GTACAGGGTTTCTTGGTTCA+TGG + chr7_1:59588362-59588381 Msa1027290:intron 45.0%
CTGACCTGGATGAACTCTAA+CGG - chr7_1:59588431-59588450 None:intergenic 45.0%
GGAGAAAGAGCTTCAACCTA+TGG + chr7_1:59589288-59589307 Msa1027290:intron 45.0%
ACAACTTGATGTGTGGAGCA+AGG + chr7_1:59590248-59590267 Msa1027290:intron 45.0%
CAACTTGATGTGTGGAGCAA+GGG + chr7_1:59590249-59590268 Msa1027290:intron 45.0%
CGATCCAAATTGACCTAGTC+TGG + chr7_1:59590378-59590397 Msa1027290:intron 45.0%
GGATTTGGGTAGAATTAGGC+GGG - chr7_1:59590482-59590501 None:intergenic 45.0%
GGGATTTGGGTAGAATTAGG+CGG - chr7_1:59590483-59590502 None:intergenic 45.0%
GGATTGAGTCTCTTGGTTAC+GGG - chr7_1:59590514-59590533 None:intergenic 45.0%
GGCAACAAACTAGGGTTTGA+AGG - chr7_1:59590563-59590582 None:intergenic 45.0%
GATAGAAGGGGCTGAAACAA+GGG - chr7_1:59590626-59590645 None:intergenic 45.0%
AGATAGAAGGGGCTGAAACA+AGG - chr7_1:59590627-59590646 None:intergenic 45.0%
GTAAAAATCGGTGGCCGATT+TGG - chr7_1:59590776-59590795 None:intergenic 45.0%
AGCAAGAACTCAGATCCATC+GGG - chr7_1:59591327-59591346 None:intergenic 45.0%
CAGCAAGAACTCAGATCCAT+CGG - chr7_1:59591328-59591347 None:intergenic 45.0%
AGGCAGGCTAAGAGAATGAA+GGG - chr7_1:59591383-59591402 None:intergenic 45.0%
AAGGCAGGCTAAGAGAATGA+AGG - chr7_1:59591384-59591403 None:intergenic 45.0%
TTCATTCTCTTAGCCTGCCT+TGG + chr7_1:59591383-59591402 Msa1027290:intron 45.0%
TGAAGGGTTTGTGTTCTCCA+AGG - chr7_1:59591403-59591422 None:intergenic 45.0%
!! ACACAGCACTTAAGTACCGA+TGG + chr7_1:59591434-59591453 Msa1027290:intron 45.0%
CTATGGGATGCATGTGTGAT+GGG - chr7_1:59591629-59591648 None:intergenic 45.0%
ACTATGGGATGCATGTGTGA+TGG - chr7_1:59591630-59591649 None:intergenic 45.0%
GTTTGACCACCACTCACTAT+GGG - chr7_1:59591645-59591664 None:intergenic 45.0%
TGTTTGACCACCACTCACTA+TGG - chr7_1:59591646-59591665 None:intergenic 45.0%
GGTCAAGTATACATTGGAGG+AGG - chr7_1:59592192-59592211 None:intergenic 45.0%
ACAGAGCGCAAGAAAGATGT+TGG + chr7_1:59592240-59592259 Msa1027290:intron 45.0%
!! ATGCACCTGGAAGTTTTGTG+AGG - chr7_1:59592269-59592288 None:intergenic 45.0%
!!! TTTAGCTTTTGGGATGCACC+TGG - chr7_1:59592282-59592301 None:intergenic 45.0%
GCAGCAATTGAAGGATGCAA+AGG + chr7_1:59592342-59592361 Msa1027290:CDS 45.0%
CAAGTGCTTCAGCAGTGTAT+TGG + chr7_1:59592505-59592524 Msa1027290:intron 45.0%
!! GAGAAGGCTGTTCTAGAGTT+TGG + chr7_1:59592636-59592655 Msa1027290:CDS 45.0%
GGACGCTTAGGACAAATGAA+GGG - chr7_1:59592714-59592733 None:intergenic 45.0%
AGGACGCTTAGGACAAATGA+AGG - chr7_1:59592715-59592734 None:intergenic 45.0%
TTCATTTGTCCTAAGCGTCC+TGG + chr7_1:59592714-59592733 Msa1027290:CDS 45.0%
TAAATTGAGCCAGGACGCTT+AGG - chr7_1:59592726-59592745 None:intergenic 45.0%
!!! TGCTTACATTTTGGAACGGG+GGG - chr7_1:59592980-59592999 None:intergenic 45.0%
!! TGTGTGGATTAGGGATCAGT+TGG + chr7_1:59593204-59593223 Msa1027290:intron 45.0%
!! ATAGGTACTGAGAAGTGGGA+AGG + chr7_1:59593266-59593285 Msa1027290:intron 45.0%
! TTTGGCTCAAGTTTAAGGGC+AGG - chr7_1:59593316-59593335 None:intergenic 45.0%
TCGTCCCCACAACAAATGTT+TGG - chr7_1:59593334-59593353 None:intergenic 45.0%
AGCATCATTGAACTGTACCG+CGG - chr7_1:59593364-59593383 None:intergenic 45.0%
! TTGTGGACATAAATGGTGGG+TGG + chr7_1:59593737-59593756 Msa1027290:intron 45.0%
!! GTCTGATAGCGGAAACTTGA+TGG + chr7_1:59593759-59593778 Msa1027290:intron 45.0%
GTGTCAAATCGGATAGGAGA+TGG - chr7_1:59593918-59593937 None:intergenic 45.0%
GTAGGGGACAAGAATCCATT+TGG + chr7_1:59594440-59594459 Msa1027290:intron 45.0%
GCTTGAGCATCCTAATCCAA+AGG + chr7_1:59594520-59594539 Msa1027290:intron 45.0%
ACACAGCCTTGAGGAAATGT+TGG + chr7_1:59594810-59594829 Msa1027290:CDS 45.0%
CGATACGATTCAGTGTTGCA+AGG + chr7_1:59594834-59594853 Msa1027290:CDS 45.0%
!!! TATTATTTAATTTATTCATA+AGG - chr7_1:59588595-59588614 None:intergenic 5.0%
!!! TTAATTTTTCTTTTTATTAT+TGG - chr7_1:59588700-59588719 None:intergenic 5.0%
!!! ATTGTTTTTTTAATAAAAAT+TGG + chr7_1:59592823-59592842 Msa1027290:intron 5.0%
!!! TTGTTTTTTTAATAAAAATT+GGG + chr7_1:59592824-59592843 Msa1027290:intron 5.0%
!! ATATAAAAAAAAATATTTGT+CGG + chr7_1:59594164-59594183 Msa1027290:intron 5.0%
!!! TTTGATTTTTTTTTTTTTTT+TGG + chr7_1:59594869-59594888 Msa1027290:exon 5.0%
GGAAGAGTTTGTGTGACTGG+AGG + chr7_1:59588340-59588359 Msa1027290:intron 50.0%
! GTTTGTGTGACTGGAGGTAC+AGG + chr7_1:59588346-59588365 Msa1027290:intron 50.0%
! ACTGGAGGTACAGGGTTTCT+TGG + chr7_1:59588355-59588374 Msa1027290:intron 50.0%
ACCTGGATGAACTCTAACGG+TGG - chr7_1:59588428-59588447 None:intergenic 50.0%
! CAGCGAGTTGAAGAGAGGAA+GGG - chr7_1:59588730-59588749 None:intergenic 50.0%
CTCCCCAGACTAGGTCAATT+TGG - chr7_1:59590385-59590404 None:intergenic 50.0%
ACGGGAAGAGGTTGGGATTT+GGG - chr7_1:59590496-59590515 None:intergenic 50.0%
TACGGGAAGAGGTTGGGATT+TGG - chr7_1:59590497-59590516 None:intergenic 50.0%
CTTGGTTACGGGAAGAGGTT+GGG - chr7_1:59590503-59590522 None:intergenic 50.0%
TCTTGGTTACGGGAAGAGGT+TGG - chr7_1:59590504-59590523 None:intergenic 50.0%
AGTCTCTTGGTTACGGGAAG+AGG - chr7_1:59590508-59590527 None:intergenic 50.0%
TTTCAGCCCCTTCTATCTCC+AGG + chr7_1:59590629-59590648 Msa1027290:intron 50.0%
!! CGTGGTCGATTTTCAGAGCA+CGG - chr7_1:59590839-59590858 None:intergenic 50.0%
!! CGTGCTCTGAAAATCGACCA+CGG + chr7_1:59590837-59590856 Msa1027290:intron 50.0%
ATCGGCGGTTATTGTCGATG+GGG - chr7_1:59590963-59590982 None:intergenic 50.0%
CATCGGCGGTTATTGTCGAT+GGG - chr7_1:59590964-59590983 None:intergenic 50.0%
TAACCGCCGATGGCTCTTTA+TGG + chr7_1:59590972-59590991 Msa1027290:intron 50.0%
AGCAAACCCATCATGGGAGA+TGG + chr7_1:59591187-59591206 Msa1027290:intron 50.0%
CACATGCATCCCATAGTGAG+TGG + chr7_1:59591633-59591652 Msa1027290:intron 50.0%
ATGCATCCCATAGTGAGTGG+TGG + chr7_1:59591636-59591655 Msa1027290:intron 50.0%
GGCTTCCTCACAAAACTTCC+AGG + chr7_1:59592261-59592280 Msa1027290:intron 50.0%
CATCATTGAACTGTACCGCG+GGG - chr7_1:59593362-59593381 None:intergenic 50.0%
GCATCATTGAACTGTACCGC+GGG - chr7_1:59593363-59593382 None:intergenic 50.0%
CCTCACAAGCTGGTTGTGTT+AGG - chr7_1:59593618-59593637 None:intergenic 50.0%
CCTAACACAACCAGCTTGTG+AGG + chr7_1:59593615-59593634 Msa1027290:intron 50.0%
GTCTCACATCGGATAGGAGA+TGG - chr7_1:59593676-59593695 None:intergenic 50.0%
!! CAATAGTGTTGGTCGTGAGG+GGG - chr7_1:59593709-59593728 None:intergenic 50.0%
!! CCAATAGTGTTGGTCGTGAG+GGG - chr7_1:59593710-59593729 None:intergenic 50.0%
!! CCCAATAGTGTTGGTCGTGA+GGG - chr7_1:59593711-59593730 None:intergenic 50.0%
CCCTCACGACCAACACTATT+GGG + chr7_1:59593708-59593727 Msa1027290:intron 50.0%
!! ACCCAATAGTGTTGGTCGTG+AGG - chr7_1:59593712-59593731 None:intergenic 50.0%
!! AATGGTGGGTGGTCTGATAG+CGG + chr7_1:59593748-59593767 Msa1027290:intron 50.0%
!! GATAGCGGAAACTTGATGGC+AGG + chr7_1:59593763-59593782 Msa1027290:intron 50.0%
TGGAGACGAGAGAAGCCAAA+TGG - chr7_1:59594458-59594477 None:intergenic 50.0%
TGGCTTCTCTCGTCTCCATA+TGG + chr7_1:59594460-59594479 Msa1027290:intron 50.0%
CGAGTTCAAACACAGCCTTG+AGG + chr7_1:59594801-59594820 Msa1027290:CDS 50.0%
GCCACCGTTAGAGTTCATCC+AGG + chr7_1:59588424-59588443 Msa1027290:intron 55.0%
! GCAGCGAGTTGAAGAGAGGA+AGG - chr7_1:59588731-59588750 None:intergenic 55.0%
! TGAGGCAGCGAGTTGAAGAG+AGG - chr7_1:59588735-59588754 None:intergenic 55.0%
!! GGTCGATTTTCAGAGCACGG+TGG - chr7_1:59590836-59590855 None:intergenic 55.0%
CCATCGGCGGTTATTGTCGA+TGG - chr7_1:59590965-59590984 None:intergenic 55.0%
CCATCGACAATAACCGCCGA+TGG + chr7_1:59590962-59590981 Msa1027290:intron 55.0%
CTGCCGCCATAAAGAGCCAT+CGG - chr7_1:59590981-59591000 None:intergenic 55.0%
!! CCAGGGCACTTAAGTGTCGA+TGG - chr7_1:59591040-59591059 None:intergenic 55.0%
CCATCGACACTTAAGTGCCC+TGG + chr7_1:59591037-59591056 Msa1027290:intron 55.0%
GCAACGCCATCTCCCATGAT+GGG - chr7_1:59591196-59591215 None:intergenic 55.0%
TGCAACGCCATCTCCCATGA+TGG - chr7_1:59591197-59591216 None:intergenic 55.0%
TGGTTGGAAGCTTCTCCCGA+TGG + chr7_1:59591309-59591328 Msa1027290:intron 55.0%
GGGTTTGTGTTCTCCAAGGC+AGG - chr7_1:59591399-59591418 None:intergenic 55.0%
TAACCGCCGATGGCTCTTTG+CGG - chr7_1:59591502-59591521 None:intergenic 55.0%
CACAACCAGCTTGTGAGGTG+AGG + chr7_1:59593620-59593639 Msa1027290:intron 55.0%
GCAATCCTCACCTCACAAGC+TGG - chr7_1:59593628-59593647 None:intergenic 55.0%
CCCCTCACGACCAACACTAT+TGG + chr7_1:59593707-59593726 Msa1027290:intron 55.0%
! AGCGGAAACTTGATGGCAGG+TGG + chr7_1:59593766-59593785 Msa1027290:intron 55.0%
GGCCACCGTGCTCACCAAAT+CGG + chr7_1:59590759-59590778 Msa1027290:intron 60.0%
!! GGTGGCCGATTTGGTGAGCA+CGG - chr7_1:59590767-59590786 None:intergenic 60.0%
!! CAGAGCACGGTGGCCGATTT+TGG - chr7_1:59590826-59590845 None:intergenic 60.0%
CCGCCATAAAGAGCCATCGG+CGG - chr7_1:59590978-59590997 None:intergenic 60.0%
CCGCCGATGGCTCTTTATGG+CGG + chr7_1:59590975-59590994 Msa1027290:intron 60.0%
CATCGGCAGTTAACCGCCGA+TGG - chr7_1:59591512-59591531 None:intergenic 60.0%
TCGGCGGTTAACTGCCGATG+AGG + chr7_1:59591512-59591531 Msa1027290:intron 60.0%
GGCTGCTCTCTCCCCAGACT+AGG - chr7_1:59590394-59590413 None:intergenic 65.0%
!! GGCCGATTTGGTGAGCACGG+TGG - chr7_1:59590764-59590783 None:intergenic 65.0%
CTGCCGCCGCAAAGAGCCAT+CGG + chr7_1:59591493-59591512 Msa1027290:intron 65.0%
! CTTGATGGCAGGTGGCCCGA+TGG + chr7_1:59593774-59593793 Msa1027290:intron 65.0%
CCGCCGATGGCTCTTTGCGG+CGG - chr7_1:59591499-59591518 None:intergenic 70.0%
CCGCCGCAAAGAGCCATCGG+CGG + chr7_1:59591496-59591515 Msa1027290:intron 70.0%
GTGGGGACGACGTGTCCCCG+CGG + chr7_1:59593344-59593363 Msa1027290:intron 75.0%
Chromosome Type Strat End Strand Name
chr7_1 gene 59588139 59594975 59588139 ID=Msa1027290;Name=Msa1027290
chr7_1 mRNA 59588139 59594975 59588139 ID=Msa1027290-mRNA-1;Parent=Msa1027290;Name=Msa1027290-mRNA-1;_AED=0.37;_eAED=0.37;_QI=0|0|0.25|0.75|0|0.25|4|102|203
chr7_1 exon 59588139 59588142 59588139 ID=Msa1027290-mRNA-1:exon:12169;Parent=Msa1027290-mRNA-1
chr7_1 exon 59592283 59592507 59592283 ID=Msa1027290-mRNA-1:exon:12170;Parent=Msa1027290-mRNA-1
chr7_1 exon 59592520 59592760 59592520 ID=Msa1027290-mRNA-1:exon:12171;Parent=Msa1027290-mRNA-1
chr7_1 exon 59594732 59594975 59594732 ID=Msa1027290-mRNA-1:exon:12172;Parent=Msa1027290-mRNA-1
chr7_1 CDS 59588139 59588142 59588139 ID=Msa1027290-mRNA-1:cds;Parent=Msa1027290-mRNA-1
chr7_1 CDS 59592283 59592507 59592283 ID=Msa1027290-mRNA-1:cds;Parent=Msa1027290-mRNA-1
chr7_1 CDS 59592520 59592760 59592520 ID=Msa1027290-mRNA-1:cds;Parent=Msa1027290-mRNA-1
chr7_1 CDS 59594732 59594873 59594732 ID=Msa1027290-mRNA-1:cds;Parent=Msa1027290-mRNA-1
chr7_1 three_prime_UTR 59594874 59594975 59594874 ID=Msa1027290-mRNA-1:three_prime_utr;Parent=Msa1027290-mRNA-1
Gene Sequence

>Msa1027290

ATGAGTGCATCCCAAAAGCTAAAATTCTTCAATGCTGATCTAAGCATCCCAGAAAGTTTCAATGCAGCAATTGAAGGATGCAAAGGAATATTCCACACTGCAACTCCAATTGATTTGGAAATGAATGAATCAGAAGAAACAGTGACAAAAAGAACAATTGATGGAGCATTAGGAATTTTAAAAGCATGCAAATATTCAAAGACAGTGAAGAGAGTTATTTACACTTCAATGTATTGGCAAGATAAAGATGATGATGTAATGGATGAGAGTTATTGGAGTGATGAAAATCTTCTTAGAGATTTGAAACCATTTGCTTGGTCATATTCAATTTCTAAAACAATGGCAGAGAAGGCTGTTCTAGAGTTTGGAGAACAACATGGTTTAGATGTTGTGACTATAATACCAACTTTTGTTCTTGGACCCTTCATTTGTCCTAAGCGTCCTGGCTCAATTTATACCTCTCTGTCTTTGGAGGTGAAGGAAATTAAAGGTGACAAGCTTCCACATTTAACCTCAAAAAAACTCATGGATGCTGGATTCGAGTTCAAACACAGCCTTGAGGAAATGTTGGACGATACGATTCAGTGTTGCAAGGAAAAGGGTTATCTTTGA

Protein sequence

>Msa1027290

MSASQKLKFFNADLSIPESFNAAIEGCKGIFHTATPIDLEMNESEETVTKRTIDGALGILKACKYSKTVKRVIYTSMYWQDKDDDVMDESYWSDENLLRDLKPFAWSYSISKTMAEKAVLEFGEQHGLDVVTIIPTFVLGPFICPKRPGSIYTSLSLEVKEIKGDKLPHLTSKKLMDAGFEFKHSLEEMLDDTIQCCKEKGYL*