Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748150 | AET00746.2 | 98.131 | 321 | 6 | 0 | 1 | 321 | 1 | 321 | 0.0 | 648 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748150 | sp|Q39218|SAT3_ARATH | 64.000 | 325 | 105 | 3 | 5 | 321 | 71 | 391 | 7.86e-146 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748150 | G7K4N0 | 98.131 | 321 | 6 | 0 | 1 | 321 | 1 | 321 | 0.0 | 648 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060670 | Msa0748150 | 0.809653 | 1.701198e-50 | -8.615850e-47 |
| Msa0105410 | Msa0748150 | 0.831100 | 2.020792e-55 | -8.615850e-47 |
| Msa0712260 | Msa0748150 | 0.808068 | 3.714489e-50 | -8.615850e-47 |
| Msa0748150 | Msa0752600 | 0.862079 | 6.530321e-64 | -8.615850e-47 |
| Msa0748150 | Msa0828240 | 0.801802 | 7.582734e-49 | -8.615850e-47 |
| Msa0748150 | Msa0855870 | 0.809779 | 1.598306e-50 | -8.615850e-47 |
| Msa0748150 | Msa0899970 | 0.816972 | 4.198505e-52 | -8.615850e-47 |
| Msa0748150 | Msa0965290 | 0.807202 | 5.670755e-50 | -8.615850e-47 |
| Msa0748150 | Msa0999680 | 0.810716 | 1.003521e-50 | -8.615850e-47 |
| Msa0748150 | Msa1026480 | 0.846431 | 2.182032e-59 | -8.615850e-47 |
| Msa0748150 | Msa1030810 | 0.814174 | 1.762125e-51 | -8.615850e-47 |
| Msa0748150 | Msa1069890 | 0.824924 | 6.200166e-54 | -8.615850e-47 |
| Msa0748150 | Msa1129330 | 0.811017 | 8.638293e-51 | -8.615850e-47 |
| Msa0748150 | Msa1132470 | 0.800704 | 1.272294e-48 | -8.615850e-47 |
| Msa0748150 | Msa1238170 | 0.823563 | 1.294786e-53 | -8.615850e-47 |
| Msa0748150 | Msa1238600 | 0.832691 | 8.180341e-56 | -8.615850e-47 |
| Msa0748150 | Msa1428900 | 0.974860 | 6.621660e-139 | -8.615850e-47 |
| Msa0432160 | Msa0748150 | 0.802005 | 6.889250e-49 | -8.615850e-47 |
| Msa0476680 | Msa0748150 | 0.806391 | 8.414705e-50 | -8.615850e-47 |
| Msa0251710 | Msa0748150 | 0.819063 | 1.414059e-52 | -8.615850e-47 |
| Msa0264830 | Msa0748150 | 0.805440 | 1.333366e-49 | -8.615850e-47 |
| Msa0290720 | Msa0748150 | 0.800649 | 1.305090e-48 | -8.615850e-47 |
| Msa0302870 | Msa0748150 | 0.802337 | 5.886306e-49 | -8.615850e-47 |
| Msa0304680 | Msa0748150 | 0.800452 | 1.432014e-48 | -8.615850e-47 |
| Msa0340340 | Msa0748150 | 0.804581 | 2.016432e-49 | -8.615850e-47 |
| Msa0484800 | Msa0748150 | 0.809515 | 1.821186e-50 | -8.615850e-47 |
| Msa0521010 | Msa0748150 | 0.801386 | 9.226832e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748150 | MtrunA17_Chr5g0446271 | 88.162 | 321 | 7 | 1 | 1 | 321 | 34 | 323 | 0.0 | 567 |
| Msa0748150 | MtrunA17_Chr3g0101841 | 70.794 | 315 | 82 | 2 | 17 | 321 | 79 | 393 | 8.44e-159 | 449 |
| Msa0748150 | MtrunA17_Chr8g0347531 | 61.189 | 286 | 107 | 1 | 36 | 321 | 62 | 343 | 1.63e-124 | 360 |
| Msa0748150 | MtrunA17_Chr5g0406711 | 47.923 | 313 | 152 | 4 | 13 | 320 | 8 | 314 | 2.32e-95 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0748150 | AT3G13110.1 | 64.000 | 325 | 105 | 3 | 5 | 321 | 71 | 391 | 8.00e-147 | 419 |
| Msa0748150 | AT1G55920.1 | 66.555 | 299 | 92 | 1 | 23 | 321 | 24 | 314 | 1.77e-145 | 412 |
| Msa0748150 | AT5G56760.1 | 61.194 | 268 | 103 | 1 | 55 | 321 | 45 | 312 | 9.92e-115 | 334 |
| Msa0748150 | AT4G35640.1 | 50.165 | 303 | 143 | 3 | 18 | 320 | 38 | 332 | 3.14e-94 | 284 |
| Msa0748150 | AT2G17640.1 | 53.731 | 268 | 118 | 2 | 53 | 320 | 34 | 295 | 3.51e-91 | 275 |
Find 69 sgRNAs with CRISPR-Local
Find 166 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCGCGGGAACTTGTATTT+TGG | 0.185561 | 5_2:-1294753 | Msa0748150:CDS |
| GGAATCTTATCAAGTTTAAT+AGG | 0.262166 | 5_2:+1294611 | None:intergenic |
| GTTGGTGAAACTGCTGTTAT+TGG | 0.286982 | 5_2:-1294869 | Msa0748150:CDS |
| ATTGGTGACGGGGTGCTTAT+AGG | 0.319174 | 5_2:-1294773 | Msa0748150:CDS |
| CAAGGTGTTGATCCCATATC+TGG | 0.330087 | 5_2:+1295408 | None:intergenic |
| AGCACCCCGTCACCAATCTT+TGG | 0.347021 | 5_2:+1294779 | None:intergenic |
| TTCACACCAAGTTCCAGATA+TGG | 0.353879 | 5_2:-1295421 | Msa0748150:CDS |
| CCTATCGCCATGTGCCTTAC+CGG | 0.354620 | 5_2:+1294805 | None:intergenic |
| AATCTTGTCACAGAAATCAT+TGG | 0.355787 | 5_2:-1295257 | Msa0748150:CDS |
| TAATAGTAACTAGACAAAAT+TGG | 0.360866 | 5_2:+1295286 | None:intergenic |
| TTCTTTGAATTAGCATCAAC+AGG | 0.364623 | 5_2:+1295481 | None:intergenic |
| ATTGGTGATGGTGCTAAAAT+TGG | 0.373817 | 5_2:-1294719 | Msa0748150:CDS |
| GAAATCATTGGAAACTGCTT+TGG | 0.380279 | 5_2:-1295245 | Msa0748150:CDS |
| GACTACCGTTGTTGGGAATC+CGG | 0.396009 | 5_2:-1294660 | Msa0748150:CDS |
| TTTGGGGTTGATATTCATCC+TGG | 0.412211 | 5_2:-1294941 | Msa0748150:CDS |
| CATTGTTTCTTGAATTTCAA+AGG | 0.417026 | 5_2:-1295061 | Msa0748150:CDS |
| GGGAATCCGGCTAAATTGAT+TGG | 0.417683 | 5_2:-1294647 | Msa0748150:CDS |
| GCTCATAATTTGTGGTCAAA+TGG | 0.421298 | 5_2:-1295010 | Msa0748150:CDS |
| TATGATTCAGAATCGCGTTT+CGG | 0.428319 | 5_2:-1294969 | Msa0748150:CDS |
| TAAGATTCCTAGCCACACTA+TGG | 0.429403 | 5_2:-1294597 | Msa0748150:CDS |
| CTCCAAGGACTACCGTTGTT+GGG | 0.430566 | 5_2:-1294667 | Msa0748150:CDS |
| TCACACCAAGTTCCAGATAT+GGG | 0.433106 | 5_2:-1295420 | Msa0748150:CDS |
| CCTCCAAGGACTACCGTTGT+TGG | 0.444028 | 5_2:-1294668 | Msa0748150:CDS |
| TTCCCTCCAATCAATTTAGC+CGG | 0.459568 | 5_2:+1294641 | None:intergenic |
| TTCCCAACAACGGTAGTCCT+TGG | 0.463382 | 5_2:+1294665 | None:intergenic |
| GGCGATAGGCATCCAAAGAT+TGG | 0.470090 | 5_2:-1294791 | Msa0748150:CDS |
| AGTTGTGGAACAATCTGAAA+AGG | 0.473399 | 5_2:-1295374 | Msa0748150:CDS |
| ATTCATCCTGGAGCTAAGAT+TGG | 0.476533 | 5_2:-1294929 | Msa0748150:CDS |
| TGCTGGTTCAGTTGTGATCA+AGG | 0.485621 | 5_2:-1294696 | Msa0748150:CDS |
| AGATCAGAAAGTGTTGTACT+AGG | 0.509118 | 5_2:+1295184 | None:intergenic |
| ATAGGGTAGCTCATAATTTG+TGG | 0.510040 | 5_2:-1295018 | Msa0748150:CDS |
| CCACTTCCAATCTTAGCTCC+AGG | 0.515453 | 5_2:+1294923 | None:intergenic |
| CCTGGAGCTAAGATTGGAAG+TGG | 0.517686 | 5_2:-1294923 | Msa0748150:CDS |
| TTGCACGGTGTGACGTTGGG+AGG | 0.518697 | 5_2:-1294830 | Msa0748150:CDS |
| TTTAGCATGTCAAGCTCATA+GGG | 0.523451 | 5_2:-1295035 | Msa0748150:CDS |
| GGTGTGACGTTGGGAGGGAC+CGG | 0.524462 | 5_2:-1294824 | Msa0748150:CDS |
| GGCATCCAAAGATTGGTGAC+GGG | 0.531755 | 5_2:-1294784 | Msa0748150:CDS |
| GGGAATATTAAGATTGGTGA+TGG | 0.534999 | 5_2:-1294731 | Msa0748150:CDS |
| TGAACATGACTTATACAAGC+AGG | 0.543036 | 5_2:+1295082 | None:intergenic |
| GATGGTGCTAAAATTGGTGC+TGG | 0.548397 | 5_2:-1294713 | Msa0748150:CDS |
| TGATCATGCAACTGGGATTG+TGG | 0.549413 | 5_2:-1294891 | Msa0748150:CDS |
| CACTGCTTAATTTAACAGCA+AGG | 0.553156 | 5_2:+1295215 | None:intergenic |
| ATAATTTGTGGTCAAATGGA+AGG | 0.554078 | 5_2:-1295006 | Msa0748150:CDS |
| TTGATCCCATATCTGGAACT+TGG | 0.557376 | 5_2:+1295415 | None:intergenic |
| CACAACTGAACTTGTATGCA+AGG | 0.562621 | 5_2:+1295390 | None:intergenic |
| GGAGGGACCGGTAAGGCACA+TGG | 0.563182 | 5_2:-1294812 | Msa0748150:CDS |
| TGCACGGTGTGACGTTGGGA+GGG | 0.567057 | 5_2:-1294829 | Msa0748150:CDS |
| CCGGTAAGGCACATGGCGAT+AGG | 0.572060 | 5_2:-1294805 | Msa0748150:CDS |
| CCAACAACGGTAGTCCTTGG+AGG | 0.574914 | 5_2:+1294668 | None:intergenic |
| AGGCATCCAAAGATTGGTGA+CGG | 0.575112 | 5_2:-1294785 | Msa0748150:CDS |
| CTTGCATACAAGTTCAGTTG+TGG | 0.582578 | 5_2:-1295389 | Msa0748150:CDS |
| AATCCGGCTAAATTGATTGG+AGG | 0.584845 | 5_2:-1294644 | Msa0748150:CDS |
| TTATGTGTGGATGAAGATGC+AGG | 0.590043 | 5_2:-1295338 | Msa0748150:CDS |
| TGACGGGGTGCTTATAGGCG+CGG | 0.592802 | 5_2:-1294768 | Msa0748150:CDS |
| ACATGATCCATAGTGTGGCT+AGG | 0.594971 | 5_2:+1294590 | None:intergenic |
| CTGGAGCTAAGATTGGAAGT+GGG | 0.605094 | 5_2:-1294922 | Msa0748150:CDS |
| GGAACAATCTGAAAAGGTTG+AGG | 0.607641 | 5_2:-1295368 | Msa0748150:CDS |
| TGGAGCTAAGATTGGAAGTG+GGG | 0.610506 | 5_2:-1294921 | Msa0748150:CDS |
| CATGCAACTGGGATTGTGGT+TGG | 0.611902 | 5_2:-1294887 | Msa0748150:CDS |
| GACGTTGGGAGGGACCGGTA+AGG | 0.614643 | 5_2:-1294819 | Msa0748150:CDS |
| ATCCGGCTAAATTGATTGGA+GGG | 0.620898 | 5_2:-1294643 | Msa0748150:CDS |
| TCACATGAATGATCATCATG+TGG | 0.621543 | 5_2:+1295451 | None:intergenic |
| GAACATGACTTATACAAGCA+GGG | 0.643802 | 5_2:+1295083 | None:intergenic |
| GATAACATAATCATAAAACT+CGG | 0.645462 | 5_2:+1294556 | None:intergenic |
| TGATCAAGGAAGTTCCTCCA+AGG | 0.647904 | 5_2:-1294682 | Msa0748150:CDS |
| TTGAGGATGAAGATTATGTG+TGG | 0.651581 | 5_2:-1295351 | Msa0748150:CDS |
| GCATCCAAAGATTGGTGACG+GGG | 0.669085 | 5_2:-1294783 | Msa0748150:CDS |
| GTGCAACATGATCCATAGTG+TGG | 0.717179 | 5_2:+1294585 | None:intergenic |
| TTTAGCCGGATTCCCAACAA+CGG | 0.717753 | 5_2:+1294655 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAGTAACTAGACAAAAT+TGG | + | chr5_2:1294766-1294785 | None:intergenic | 20.0% |
| !!! | TGATCTTTTTGTTAGAATTT+TGG | - | chr5_2:1294882-1294901 | Msa0748150:CDS | 20.0% |
| !! | GATAACATAATCATAAAACT+CGG | + | chr5_2:1295496-1295515 | None:intergenic | 20.0% |
| !! | TAATAGTAACTAGACAAAAT+TGG | + | chr5_2:1294766-1294785 | None:intergenic | 20.0% |
| !!! | TGATCTTTTTGTTAGAATTT+TGG | - | chr5_2:1294882-1294901 | Msa0748150:CDS | 20.0% |
| !! | GATAACATAATCATAAAACT+CGG | + | chr5_2:1295496-1295515 | None:intergenic | 20.0% |
| !! | CATTGTTTCTTGAATTTCAA+AGG | - | chr5_2:1294988-1295007 | Msa0748150:CDS | 25.0% |
| !!! | ATTTTGGGGAATATTAAGAT+TGG | - | chr5_2:1295312-1295331 | Msa0748150:CDS | 25.0% |
| ! | GGAATCTTATCAAGTTTAAT+AGG | + | chr5_2:1295441-1295460 | None:intergenic | 25.0% |
| !! | CATTGTTTCTTGAATTTCAA+AGG | - | chr5_2:1294988-1295007 | Msa0748150:CDS | 25.0% |
| !!! | ATTTTGGGGAATATTAAGAT+TGG | - | chr5_2:1295312-1295331 | Msa0748150:CDS | 25.0% |
| ! | GGAATCTTATCAAGTTTAAT+AGG | + | chr5_2:1295441-1295460 | None:intergenic | 25.0% |
| TTCTTTGAATTAGCATCAAC+AGG | + | chr5_2:1294571-1294590 | None:intergenic | 30.0% | |
| AATCTTGTCACAGAAATCAT+TGG | - | chr5_2:1294792-1294811 | Msa0748150:CDS | 30.0% | |
| ! | ATAATTTGTGGTCAAATGGA+AGG | - | chr5_2:1295043-1295062 | Msa0748150:CDS | 30.0% |
| ! | AATGATGTGTCTATTTTGCA+CGG | - | chr5_2:1295204-1295223 | Msa0748150:CDS | 30.0% |
| TTCTTTGAATTAGCATCAAC+AGG | + | chr5_2:1294571-1294590 | None:intergenic | 30.0% | |
| AATCTTGTCACAGAAATCAT+TGG | - | chr5_2:1294792-1294811 | Msa0748150:CDS | 30.0% | |
| ! | ATAATTTGTGGTCAAATGGA+AGG | - | chr5_2:1295043-1295062 | Msa0748150:CDS | 30.0% |
| ! | AATGATGTGTCTATTTTGCA+CGG | - | chr5_2:1295204-1295223 | Msa0748150:CDS | 30.0% |
| TCACATGAATGATCATCATG+TGG | + | chr5_2:1294601-1294620 | None:intergenic | 35.0% | |
| AGTTGTGGAACAATCTGAAA+AGG | - | chr5_2:1294675-1294694 | Msa0748150:CDS | 35.0% | |
| TTGAGGATGAAGATTATGTG+TGG | - | chr5_2:1294698-1294717 | Msa0748150:CDS | 35.0% | |
| GAAATCATTGGAAACTGCTT+TGG | - | chr5_2:1294804-1294823 | Msa0748150:CDS | 35.0% | |
| CACTGCTTAATTTAACAGCA+AGG | + | chr5_2:1294837-1294856 | None:intergenic | 35.0% | |
| !! | AGATCAGAAAGTGTTGTACT+AGG | + | chr5_2:1294868-1294887 | None:intergenic | 35.0% |
| GAACATGACTTATACAAGCA+GGG | + | chr5_2:1294969-1294988 | None:intergenic | 35.0% | |
| TGAACATGACTTATACAAGC+AGG | + | chr5_2:1294970-1294989 | None:intergenic | 35.0% | |
| ! | TTTTAGCATGTCAAGCTCAT+AGG | - | chr5_2:1295013-1295032 | Msa0748150:CDS | 35.0% |
| TTTAGCATGTCAAGCTCATA+GGG | - | chr5_2:1295014-1295033 | Msa0748150:CDS | 35.0% | |
| ATAGGGTAGCTCATAATTTG+TGG | - | chr5_2:1295031-1295050 | Msa0748150:CDS | 35.0% | |
| ! | GCTCATAATTTGTGGTCAAA+TGG | - | chr5_2:1295039-1295058 | Msa0748150:CDS | 35.0% |
| TATGATTCAGAATCGCGTTT+CGG | - | chr5_2:1295080-1295099 | Msa0748150:CDS | 35.0% | |
| ! | TTTTGCTTGATCATGCAACT+GGG | - | chr5_2:1295151-1295170 | Msa0748150:CDS | 35.0% |
| GGGAATATTAAGATTGGTGA+TGG | - | chr5_2:1295318-1295337 | Msa0748150:CDS | 35.0% | |
| !! | ATTGGTGATGGTGCTAAAAT+TGG | - | chr5_2:1295330-1295349 | Msa0748150:CDS | 35.0% |
| TCACATGAATGATCATCATG+TGG | + | chr5_2:1294601-1294620 | None:intergenic | 35.0% | |
| AGTTGTGGAACAATCTGAAA+AGG | - | chr5_2:1294675-1294694 | Msa0748150:CDS | 35.0% | |
| TTGAGGATGAAGATTATGTG+TGG | - | chr5_2:1294698-1294717 | Msa0748150:CDS | 35.0% | |
| GAAATCATTGGAAACTGCTT+TGG | - | chr5_2:1294804-1294823 | Msa0748150:CDS | 35.0% | |
| CACTGCTTAATTTAACAGCA+AGG | + | chr5_2:1294837-1294856 | None:intergenic | 35.0% | |
| !! | AGATCAGAAAGTGTTGTACT+AGG | + | chr5_2:1294868-1294887 | None:intergenic | 35.0% |
| GAACATGACTTATACAAGCA+GGG | + | chr5_2:1294969-1294988 | None:intergenic | 35.0% | |
| TGAACATGACTTATACAAGC+AGG | + | chr5_2:1294970-1294989 | None:intergenic | 35.0% | |
| ! | TTTTAGCATGTCAAGCTCAT+AGG | - | chr5_2:1295013-1295032 | Msa0748150:CDS | 35.0% |
| TTTAGCATGTCAAGCTCATA+GGG | - | chr5_2:1295014-1295033 | Msa0748150:CDS | 35.0% | |
| ATAGGGTAGCTCATAATTTG+TGG | - | chr5_2:1295031-1295050 | Msa0748150:CDS | 35.0% | |
| ! | GCTCATAATTTGTGGTCAAA+TGG | - | chr5_2:1295039-1295058 | Msa0748150:CDS | 35.0% |
| TATGATTCAGAATCGCGTTT+CGG | - | chr5_2:1295080-1295099 | Msa0748150:CDS | 35.0% | |
| ! | TTTTGCTTGATCATGCAACT+GGG | - | chr5_2:1295151-1295170 | Msa0748150:CDS | 35.0% |
| GGGAATATTAAGATTGGTGA+TGG | - | chr5_2:1295318-1295337 | Msa0748150:CDS | 35.0% | |
| !! | ATTGGTGATGGTGCTAAAAT+TGG | - | chr5_2:1295330-1295349 | Msa0748150:CDS | 35.0% |
| TTCACACCAAGTTCCAGATA+TGG | - | chr5_2:1294628-1294647 | Msa0748150:CDS | 40.0% | |
| TCACACCAAGTTCCAGATAT+GGG | - | chr5_2:1294629-1294648 | Msa0748150:CDS | 40.0% | |
| ! | TTGATCCCATATCTGGAACT+TGG | + | chr5_2:1294637-1294656 | None:intergenic | 40.0% |
| CACAACTGAACTTGTATGCA+AGG | + | chr5_2:1294662-1294681 | None:intergenic | 40.0% | |
| CTTGCATACAAGTTCAGTTG+TGG | - | chr5_2:1294660-1294679 | Msa0748150:CDS | 40.0% | |
| GGAACAATCTGAAAAGGTTG+AGG | - | chr5_2:1294681-1294700 | Msa0748150:CDS | 40.0% | |
| TTATGTGTGGATGAAGATGC+AGG | - | chr5_2:1294711-1294730 | Msa0748150:CDS | 40.0% | |
| ! | AATCGCGTTTCGGAAGTTTT+TGG | - | chr5_2:1295090-1295109 | Msa0748150:CDS | 40.0% |
| ! | ATCGCGTTTCGGAAGTTTTT+GGG | - | chr5_2:1295091-1295110 | Msa0748150:CDS | 40.0% |
| !! | TTTGGGGTTGATATTCATCC+TGG | - | chr5_2:1295108-1295127 | Msa0748150:CDS | 40.0% |
| ATTCATCCTGGAGCTAAGAT+TGG | - | chr5_2:1295120-1295139 | Msa0748150:CDS | 40.0% | |
| ! | GTTTTGCTTGATCATGCAAC+TGG | - | chr5_2:1295150-1295169 | Msa0748150:CDS | 40.0% |
| ! | GTTGGTGAAACTGCTGTTAT+TGG | - | chr5_2:1295180-1295199 | Msa0748150:CDS | 40.0% |
| AATCCGGCTAAATTGATTGG+AGG | - | chr5_2:1295405-1295424 | Msa0748150:CDS | 40.0% | |
| ATCCGGCTAAATTGATTGGA+GGG | - | chr5_2:1295406-1295425 | Msa0748150:CDS | 40.0% | |
| TTCCCTCCAATCAATTTAGC+CGG | + | chr5_2:1295411-1295430 | None:intergenic | 40.0% | |
| TAAGATTCCTAGCCACACTA+TGG | - | chr5_2:1295452-1295471 | Msa0748150:CDS | 40.0% | |
| TTCACACCAAGTTCCAGATA+TGG | - | chr5_2:1294628-1294647 | Msa0748150:CDS | 40.0% | |
| TCACACCAAGTTCCAGATAT+GGG | - | chr5_2:1294629-1294648 | Msa0748150:CDS | 40.0% | |
| ! | TTGATCCCATATCTGGAACT+TGG | + | chr5_2:1294637-1294656 | None:intergenic | 40.0% |
| CACAACTGAACTTGTATGCA+AGG | + | chr5_2:1294662-1294681 | None:intergenic | 40.0% | |
| CTTGCATACAAGTTCAGTTG+TGG | - | chr5_2:1294660-1294679 | Msa0748150:CDS | 40.0% | |
| GGAACAATCTGAAAAGGTTG+AGG | - | chr5_2:1294681-1294700 | Msa0748150:CDS | 40.0% | |
| TTATGTGTGGATGAAGATGC+AGG | - | chr5_2:1294711-1294730 | Msa0748150:CDS | 40.0% | |
| ! | AATCGCGTTTCGGAAGTTTT+TGG | - | chr5_2:1295090-1295109 | Msa0748150:CDS | 40.0% |
| ! | ATCGCGTTTCGGAAGTTTTT+GGG | - | chr5_2:1295091-1295110 | Msa0748150:CDS | 40.0% |
| !! | TTTGGGGTTGATATTCATCC+TGG | - | chr5_2:1295108-1295127 | Msa0748150:CDS | 40.0% |
| ATTCATCCTGGAGCTAAGAT+TGG | - | chr5_2:1295120-1295139 | Msa0748150:CDS | 40.0% | |
| ! | GTTTTGCTTGATCATGCAAC+TGG | - | chr5_2:1295150-1295169 | Msa0748150:CDS | 40.0% |
| ! | GTTGGTGAAACTGCTGTTAT+TGG | - | chr5_2:1295180-1295199 | Msa0748150:CDS | 40.0% |
| AATCCGGCTAAATTGATTGG+AGG | - | chr5_2:1295405-1295424 | Msa0748150:CDS | 40.0% | |
| ATCCGGCTAAATTGATTGGA+GGG | - | chr5_2:1295406-1295425 | Msa0748150:CDS | 40.0% | |
| TTCCCTCCAATCAATTTAGC+CGG | + | chr5_2:1295411-1295430 | None:intergenic | 40.0% | |
| TAAGATTCCTAGCCACACTA+TGG | - | chr5_2:1295452-1295471 | Msa0748150:CDS | 40.0% | |
| !! | CAAGGTGTTGATCCCATATC+TGG | + | chr5_2:1294644-1294663 | None:intergenic | 45.0% |
| ! | TCGCGTTTCGGAAGTTTTTG+GGG | - | chr5_2:1295092-1295111 | Msa0748150:CDS | 45.0% |
| CTGGAGCTAAGATTGGAAGT+GGG | - | chr5_2:1295127-1295146 | Msa0748150:CDS | 45.0% | |
| TGGAGCTAAGATTGGAAGTG+GGG | - | chr5_2:1295128-1295147 | Msa0748150:CDS | 45.0% | |
| TGATCATGCAACTGGGATTG+TGG | - | chr5_2:1295158-1295177 | Msa0748150:CDS | 45.0% | |
| ! | TATTTTGCACGGTGTGACGT+TGG | - | chr5_2:1295215-1295234 | Msa0748150:CDS | 45.0% |
| ! | ATTTTGCACGGTGTGACGTT+GGG | - | chr5_2:1295216-1295235 | Msa0748150:CDS | 45.0% |
| AGGCATCCAAAGATTGGTGA+CGG | - | chr5_2:1295264-1295283 | Msa0748150:CDS | 45.0% | |
| ! | GATGGTGCTAAAATTGGTGC+TGG | - | chr5_2:1295336-1295355 | Msa0748150:CDS | 45.0% |
| !! | TGCTGGTTCAGTTGTGATCA+AGG | - | chr5_2:1295353-1295372 | Msa0748150:CDS | 45.0% |
| TGATCAAGGAAGTTCCTCCA+AGG | - | chr5_2:1295367-1295386 | Msa0748150:CDS | 45.0% | |
| TTTAGCCGGATTCCCAACAA+CGG | + | chr5_2:1295397-1295416 | None:intergenic | 45.0% | |
| GGGAATCCGGCTAAATTGAT+TGG | - | chr5_2:1295402-1295421 | Msa0748150:CDS | 45.0% | |
| ACATGATCCATAGTGTGGCT+AGG | + | chr5_2:1295462-1295481 | None:intergenic | 45.0% | |
| GTGCAACATGATCCATAGTG+TGG | + | chr5_2:1295467-1295486 | None:intergenic | 45.0% | |
| !! | CAAGGTGTTGATCCCATATC+TGG | + | chr5_2:1294644-1294663 | None:intergenic | 45.0% |
| ! | TCGCGTTTCGGAAGTTTTTG+GGG | - | chr5_2:1295092-1295111 | Msa0748150:CDS | 45.0% |
| CTGGAGCTAAGATTGGAAGT+GGG | - | chr5_2:1295127-1295146 | Msa0748150:CDS | 45.0% | |
| TGGAGCTAAGATTGGAAGTG+GGG | - | chr5_2:1295128-1295147 | Msa0748150:CDS | 45.0% | |
| TGATCATGCAACTGGGATTG+TGG | - | chr5_2:1295158-1295177 | Msa0748150:CDS | 45.0% | |
| ! | TATTTTGCACGGTGTGACGT+TGG | - | chr5_2:1295215-1295234 | Msa0748150:CDS | 45.0% |
| ! | ATTTTGCACGGTGTGACGTT+GGG | - | chr5_2:1295216-1295235 | Msa0748150:CDS | 45.0% |
| AGGCATCCAAAGATTGGTGA+CGG | - | chr5_2:1295264-1295283 | Msa0748150:CDS | 45.0% | |
| ! | GATGGTGCTAAAATTGGTGC+TGG | - | chr5_2:1295336-1295355 | Msa0748150:CDS | 45.0% |
| !! | TGCTGGTTCAGTTGTGATCA+AGG | - | chr5_2:1295353-1295372 | Msa0748150:CDS | 45.0% |
| TGATCAAGGAAGTTCCTCCA+AGG | - | chr5_2:1295367-1295386 | Msa0748150:CDS | 45.0% | |
| TTTAGCCGGATTCCCAACAA+CGG | + | chr5_2:1295397-1295416 | None:intergenic | 45.0% | |
| GGGAATCCGGCTAAATTGAT+TGG | - | chr5_2:1295402-1295421 | Msa0748150:CDS | 45.0% | |
| ACATGATCCATAGTGTGGCT+AGG | + | chr5_2:1295462-1295481 | None:intergenic | 45.0% | |
| GTGCAACATGATCCATAGTG+TGG | + | chr5_2:1295467-1295486 | None:intergenic | 45.0% | |
| CCACTTCCAATCTTAGCTCC+AGG | + | chr5_2:1295129-1295148 | None:intergenic | 50.0% | |
| CCTGGAGCTAAGATTGGAAG+TGG | - | chr5_2:1295126-1295145 | Msa0748150:CDS | 50.0% | |
| CATGCAACTGGGATTGTGGT+TGG | - | chr5_2:1295162-1295181 | Msa0748150:CDS | 50.0% | |
| GGCGATAGGCATCCAAAGAT+TGG | - | chr5_2:1295258-1295277 | Msa0748150:CDS | 50.0% | |
| ! | GGCATCCAAAGATTGGTGAC+GGG | - | chr5_2:1295265-1295284 | Msa0748150:CDS | 50.0% |
| !! | GCATCCAAAGATTGGTGACG+GGG | - | chr5_2:1295266-1295285 | Msa0748150:CDS | 50.0% |
| !! | ATTGGTGACGGGGTGCTTAT+AGG | - | chr5_2:1295276-1295295 | Msa0748150:CDS | 50.0% |
| ! | AGGCGCGGGAACTTGTATTT+TGG | - | chr5_2:1295296-1295315 | Msa0748150:CDS | 50.0% |
| ! | GGCGCGGGAACTTGTATTTT+GGG | - | chr5_2:1295297-1295316 | Msa0748150:CDS | 50.0% |
| ! | GCGCGGGAACTTGTATTTTG+GGG | - | chr5_2:1295298-1295317 | Msa0748150:CDS | 50.0% |
| CTCCAAGGACTACCGTTGTT+GGG | - | chr5_2:1295382-1295401 | Msa0748150:CDS | 50.0% | |
| TTCCCAACAACGGTAGTCCT+TGG | + | chr5_2:1295387-1295406 | None:intergenic | 50.0% | |
| GACTACCGTTGTTGGGAATC+CGG | - | chr5_2:1295389-1295408 | Msa0748150:CDS | 50.0% | |
| CCACTTCCAATCTTAGCTCC+AGG | + | chr5_2:1295129-1295148 | None:intergenic | 50.0% | |
| CCTGGAGCTAAGATTGGAAG+TGG | - | chr5_2:1295126-1295145 | Msa0748150:CDS | 50.0% | |
| CATGCAACTGGGATTGTGGT+TGG | - | chr5_2:1295162-1295181 | Msa0748150:CDS | 50.0% | |
| GGCGATAGGCATCCAAAGAT+TGG | - | chr5_2:1295258-1295277 | Msa0748150:CDS | 50.0% | |
| ! | GGCATCCAAAGATTGGTGAC+GGG | - | chr5_2:1295265-1295284 | Msa0748150:CDS | 50.0% |
| !! | GCATCCAAAGATTGGTGACG+GGG | - | chr5_2:1295266-1295285 | Msa0748150:CDS | 50.0% |
| !! | ATTGGTGACGGGGTGCTTAT+AGG | - | chr5_2:1295276-1295295 | Msa0748150:CDS | 50.0% |
| ! | AGGCGCGGGAACTTGTATTT+TGG | - | chr5_2:1295296-1295315 | Msa0748150:CDS | 50.0% |
| ! | GGCGCGGGAACTTGTATTTT+GGG | - | chr5_2:1295297-1295316 | Msa0748150:CDS | 50.0% |
| ! | GCGCGGGAACTTGTATTTTG+GGG | - | chr5_2:1295298-1295317 | Msa0748150:CDS | 50.0% |
| CTCCAAGGACTACCGTTGTT+GGG | - | chr5_2:1295382-1295401 | Msa0748150:CDS | 50.0% | |
| TTCCCAACAACGGTAGTCCT+TGG | + | chr5_2:1295387-1295406 | None:intergenic | 50.0% | |
| GACTACCGTTGTTGGGAATC+CGG | - | chr5_2:1295389-1295408 | Msa0748150:CDS | 50.0% | |
| CCTATCGCCATGTGCCTTAC+CGG | + | chr5_2:1295247-1295266 | None:intergenic | 55.0% | |
| AGCACCCCGTCACCAATCTT+TGG | + | chr5_2:1295273-1295292 | None:intergenic | 55.0% | |
| CCAACAACGGTAGTCCTTGG+AGG | + | chr5_2:1295384-1295403 | None:intergenic | 55.0% | |
| CCTCCAAGGACTACCGTTGT+TGG | - | chr5_2:1295381-1295400 | Msa0748150:CDS | 55.0% | |
| CCTATCGCCATGTGCCTTAC+CGG | + | chr5_2:1295247-1295266 | None:intergenic | 55.0% | |
| AGCACCCCGTCACCAATCTT+TGG | + | chr5_2:1295273-1295292 | None:intergenic | 55.0% | |
| CCAACAACGGTAGTCCTTGG+AGG | + | chr5_2:1295384-1295403 | None:intergenic | 55.0% | |
| CCTCCAAGGACTACCGTTGT+TGG | - | chr5_2:1295381-1295400 | Msa0748150:CDS | 55.0% | |
| TTGCACGGTGTGACGTTGGG+AGG | - | chr5_2:1295219-1295238 | Msa0748150:CDS | 60.0% | |
| TGCACGGTGTGACGTTGGGA+GGG | - | chr5_2:1295220-1295239 | Msa0748150:CDS | 60.0% | |
| CCGGTAAGGCACATGGCGAT+AGG | - | chr5_2:1295244-1295263 | Msa0748150:CDS | 60.0% | |
| ! | TGACGGGGTGCTTATAGGCG+CGG | - | chr5_2:1295281-1295300 | Msa0748150:CDS | 60.0% |
| TTGCACGGTGTGACGTTGGG+AGG | - | chr5_2:1295219-1295238 | Msa0748150:CDS | 60.0% | |
| TGCACGGTGTGACGTTGGGA+GGG | - | chr5_2:1295220-1295239 | Msa0748150:CDS | 60.0% | |
| CCGGTAAGGCACATGGCGAT+AGG | - | chr5_2:1295244-1295263 | Msa0748150:CDS | 60.0% | |
| ! | TGACGGGGTGCTTATAGGCG+CGG | - | chr5_2:1295281-1295300 | Msa0748150:CDS | 60.0% |
| GGTGTGACGTTGGGAGGGAC+CGG | - | chr5_2:1295225-1295244 | Msa0748150:CDS | 65.0% | |
| GACGTTGGGAGGGACCGGTA+AGG | - | chr5_2:1295230-1295249 | Msa0748150:CDS | 65.0% | |
| GGAGGGACCGGTAAGGCACA+TGG | - | chr5_2:1295237-1295256 | Msa0748150:CDS | 65.0% | |
| ! | GACGGGGTGCTTATAGGCGC+GGG | - | chr5_2:1295282-1295301 | Msa0748150:CDS | 65.0% |
| GGTGTGACGTTGGGAGGGAC+CGG | - | chr5_2:1295225-1295244 | Msa0748150:CDS | 65.0% | |
| GACGTTGGGAGGGACCGGTA+AGG | - | chr5_2:1295230-1295249 | Msa0748150:CDS | 65.0% | |
| GGAGGGACCGGTAAGGCACA+TGG | - | chr5_2:1295237-1295256 | Msa0748150:CDS | 65.0% | |
| ! | GACGGGGTGCTTATAGGCGC+GGG | - | chr5_2:1295282-1295301 | Msa0748150:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 1294553 | 1295518 | 1294553 | ID=Msa0748150;Name=Msa0748150 |
| chr5_2 | mRNA | 1294553 | 1295518 | 1294553 | ID=Msa0748150-mRNA-1;Parent=Msa0748150;Name=Msa0748150-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|321 |
| chr5_2 | exon | 1294553 | 1295518 | 1294553 | ID=Msa0748150-mRNA-1:exon:357;Parent=Msa0748150-mRNA-1 |
| chr5_2 | CDS | 1294553 | 1295518 | 1294553 | ID=Msa0748150-mRNA-1:cds;Parent=Msa0748150-mRNA-1 |
| Gene Sequence |
| Protein sequence |
