Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238170 | XP_013445246.1 | 92.949 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 4.65e-102 | 299 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238170 | sp|Q941R6|MLP31_ARATH | 35.948 | 153 | 94 | 4 | 3 | 152 | 20 | 171 | 7.10e-25 | 97.1 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0030160 | Msa1238170 | 0.814004 | 1.921545e-51 | -8.615850e-47 |
Msa0613340 | Msa1238170 | 0.820277 | 7.465869e-53 | -8.615850e-47 |
Msa0629240 | Msa1238170 | 0.806016 | 1.009173e-49 | -8.615850e-47 |
Msa0693330 | Msa1238170 | 0.824803 | 6.623243e-54 | -8.615850e-47 |
Msa0702720 | Msa1238170 | 0.819718 | 1.002294e-52 | -8.615850e-47 |
Msa0708310 | Msa1238170 | 0.809426 | 1.903340e-50 | -8.615850e-47 |
Msa0709120 | Msa1238170 | 0.814852 | 1.247466e-51 | -8.615850e-47 |
Msa0735550 | Msa1238170 | 0.814965 | 1.177457e-51 | -8.615850e-47 |
Msa0743930 | Msa1238170 | 0.804049 | 2.602850e-49 | -8.615850e-47 |
Msa0748150 | Msa1238170 | 0.823563 | 1.294786e-53 | -8.615850e-47 |
Msa0814600 | Msa1238170 | 0.801887 | 7.282321e-49 | -8.615850e-47 |
Msa0828240 | Msa1238170 | 0.802752 | 4.832663e-49 | -8.615850e-47 |
Msa0125650 | Msa1238170 | 0.804740 | 1.868864e-49 | -8.615850e-47 |
Msa0139670 | Msa1238170 | 0.816959 | 4.226641e-52 | -8.615850e-47 |
Msa0190930 | Msa1238170 | 0.832228 | 1.065365e-55 | -8.615850e-47 |
Msa0207350 | Msa1238170 | 0.805241 | 1.468285e-49 | -8.615850e-47 |
Msa0214550 | Msa1238170 | 0.811025 | 8.603900e-51 | -8.615850e-47 |
Msa0217480 | Msa1238170 | 0.804500 | 2.096915e-49 | -8.615850e-47 |
Msa0233250 | Msa1238170 | 0.817566 | 3.086293e-52 | -8.615850e-47 |
Msa1225860 | Msa1238170 | -0.804952 | 1.687676e-49 | -8.615850e-47 |
Msa1226270 | Msa1238170 | 0.801035 | 1.088542e-48 | -8.615850e-47 |
Msa1234620 | Msa1238170 | 0.803770 | 2.974974e-49 | -8.615850e-47 |
Msa1238170 | Msa1243870 | 0.804809 | 1.807427e-49 | -8.615850e-47 |
Msa1238170 | Msa1271130 | 0.809470 | 1.862698e-50 | -8.615850e-47 |
Msa1238170 | Msa1284000 | 0.819170 | 1.336550e-52 | -8.615850e-47 |
Msa1238170 | Msa1285550 | 0.824304 | 8.679561e-54 | -8.615850e-47 |
Msa1238170 | Msa1286800 | 0.810387 | 1.182124e-50 | -8.615850e-47 |
Msa1238170 | Msa1287190 | 0.808346 | 3.240805e-50 | -8.615850e-47 |
Msa1238170 | Msa1323690 | 0.808687 | 2.740121e-50 | -8.615850e-47 |
Msa1238170 | Msa1341840 | 0.816861 | 4.445886e-52 | -8.615850e-47 |
Msa1238170 | Msa1353890 | 0.814058 | 1.868707e-51 | -8.615850e-47 |
Msa1238170 | Msa1369690 | 0.802869 | 4.571392e-49 | -8.615850e-47 |
Msa1238170 | Msa1418240 | 0.827957 | 1.174092e-54 | -8.615850e-47 |
Msa1238170 | Msa1425090 | 0.800405 | 1.463460e-48 | -8.615850e-47 |
Msa1238170 | Msa1428900 | 0.826716 | 2.329257e-54 | -8.615850e-47 |
Msa1238170 | Msa1439270 | 0.890398 | 1.021561e-73 | -8.615850e-47 |
Msa1238170 | Msa1456230 | 0.812315 | 4.509244e-51 | -8.615850e-47 |
Msa1238170 | Msa1459100 | 0.816006 | 6.908173e-52 | -8.615850e-47 |
Msa1238170 | Msa1460320 | -0.804671 | 1.931728e-49 | -8.615850e-47 |
Msa1238170 | Msa1461370 | 0.810203 | 1.295456e-50 | -8.615850e-47 |
Msa0367870 | Msa1238170 | 0.814801 | 1.280489e-51 | -8.615850e-47 |
Msa0382370 | Msa1238170 | 0.813917 | 2.007991e-51 | -8.615850e-47 |
Msa0405130 | Msa1238170 | 0.800329 | 1.516964e-48 | -8.615850e-47 |
Msa0432160 | Msa1238170 | 0.831604 | 1.519690e-55 | -8.615850e-47 |
Msa0450400 | Msa1238170 | -0.839908 | 1.195625e-57 | -8.615850e-47 |
Msa0455760 | Msa1238170 | 0.807654 | 4.548051e-50 | -8.615850e-47 |
Msa0476680 | Msa1238170 | 0.834656 | 2.642817e-56 | -8.615850e-47 |
Msa0999680 | Msa1238170 | 0.810657 | 1.033480e-50 | -8.615850e-47 |
Msa1012800 | Msa1238170 | 0.802836 | 4.643315e-49 | -8.615850e-47 |
Msa1030810 | Msa1238170 | 0.803644 | 3.159306e-49 | -8.615850e-47 |
Msa1034500 | Msa1238170 | 0.802530 | 5.371016e-49 | -8.615850e-47 |
Msa1061980 | Msa1238170 | 0.824417 | 8.164709e-54 | -8.615850e-47 |
Msa1089450 | Msa1238170 | 0.821820 | 3.294836e-53 | -8.615850e-47 |
Msa1102820 | Msa1238170 | 0.807276 | 5.469418e-50 | -8.615850e-47 |
Msa0240900 | Msa1238170 | 0.816302 | 5.932118e-52 | -8.615850e-47 |
Msa0251710 | Msa1238170 | 0.808164 | 3.543670e-50 | -8.615850e-47 |
Msa0264830 | Msa1238170 | 0.817093 | 3.942203e-52 | -8.615850e-47 |
Msa0279850 | Msa1238170 | 0.815800 | 7.678706e-52 | -8.615850e-47 |
Msa0290720 | Msa1238170 | 0.809486 | 1.847551e-50 | -8.615850e-47 |
Msa0296620 | Msa1238170 | 0.800955 | 1.130473e-48 | -8.615850e-47 |
Msa0296820 | Msa1238170 | 0.820862 | 5.481192e-53 | -8.615850e-47 |
Msa0302870 | Msa1238170 | 0.806441 | 8.214206e-50 | -8.615850e-47 |
Msa0311510 | Msa1238170 | 0.831640 | 1.488252e-55 | -8.615850e-47 |
Msa0317970 | Msa1238170 | 0.838494 | 2.781644e-57 | -8.615850e-47 |
Msa0334640 | Msa1238170 | 0.830991 | 2.149635e-55 | -8.615850e-47 |
Msa0340340 | Msa1238170 | 0.812156 | 4.885653e-51 | -8.615850e-47 |
Msa0343850 | Msa1238170 | 0.822219 | 2.662853e-53 | -8.615850e-47 |
Msa1129550 | Msa1238170 | 0.803091 | 4.112341e-49 | -8.615850e-47 |
Msa1131050 | Msa1238170 | 0.800381 | 1.480122e-48 | -8.615850e-47 |
Msa1147740 | Msa1238170 | 0.807889 | 4.053858e-50 | -8.615850e-47 |
Msa1150850 | Msa1238170 | 0.810340 | 1.210406e-50 | -8.615850e-47 |
Msa1184690 | Msa1238170 | 0.826415 | 2.747535e-54 | -8.615850e-47 |
Msa0485240 | Msa1238170 | 0.825561 | 4.384348e-54 | -8.615850e-47 |
Msa0521010 | Msa1238170 | 0.835081 | 2.064830e-56 | -8.615850e-47 |
Msa0549890 | Msa1238170 | 0.814634 | 1.394455e-51 | -8.615850e-47 |
Msa0583360 | Msa1238170 | -0.801842 | 7.438593e-49 | -8.615850e-47 |
Msa0846860 | Msa1238170 | 0.800930 | 1.143643e-48 | -8.615850e-47 |
Msa0853520 | Msa1238170 | 0.802886 | 4.534849e-49 | -8.615850e-47 |
Msa0855870 | Msa1238170 | 0.806538 | 7.833967e-50 | -8.615850e-47 |
Msa0870380 | Msa1238170 | 0.813127 | 2.994903e-51 | -8.615850e-47 |
Msa0870520 | Msa1238170 | 0.857062 | 2.107684e-62 | -8.615850e-47 |
Msa0870540 | Msa1238170 | 0.847151 | 1.386176e-59 | -8.615850e-47 |
Msa0899970 | Msa1238170 | 0.802189 | 6.313474e-49 | -8.615850e-47 |
Msa0903710 | Msa1238170 | 0.861113 | 1.288412e-63 | -8.615850e-47 |
Msa0936380 | Msa1238170 | 0.865798 | 4.547619e-65 | -8.615850e-47 |
Msa0965080 | Msa1238170 | 0.805925 | 1.054970e-49 | -8.615850e-47 |
Msa0965290 | Msa1238170 | 0.812799 | 3.535221e-51 | -8.615850e-47 |
Msa0972960 | Msa1238170 | 0.815349 | 9.674979e-52 | -8.615850e-47 |
Msa0973140 | Msa1238170 | 0.854073 | 1.568559e-61 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238170 | MtrunA17_Chr8g0355811 | 92.949 | 156 | 11 | 0 | 1 | 156 | 1 | 156 | 4.28e-106 | 299 |
Msa1238170 | MtrunA17_Chr8g0355821 | 84.416 | 154 | 24 | 0 | 1 | 154 | 1 | 154 | 1.15e-97 | 278 |
Msa1238170 | MtrunA17_Chr8g0355801 | 83.333 | 156 | 26 | 0 | 1 | 156 | 1 | 156 | 1.40e-95 | 273 |
Msa1238170 | MtrunA17_Chr8g0355791 | 81.410 | 156 | 29 | 0 | 1 | 156 | 1 | 156 | 2.69e-92 | 264 |
Msa1238170 | MtrunA17_Chr8g0355771 | 80.128 | 156 | 31 | 0 | 1 | 156 | 1 | 156 | 4.76e-91 | 261 |
Msa1238170 | MtrunA17_Chr8g0355741 | 75.796 | 157 | 37 | 1 | 1 | 156 | 1 | 157 | 4.67e-85 | 246 |
Msa1238170 | MtrunA17_Chr8g0355661 | 74.522 | 157 | 38 | 2 | 1 | 156 | 1 | 156 | 8.52e-85 | 245 |
Msa1238170 | MtrunA17_Chr8g0355721 | 71.975 | 157 | 42 | 2 | 1 | 156 | 1 | 156 | 3.21e-81 | 236 |
Msa1238170 | MtrunA17_Chr8g0355761 | 69.737 | 152 | 45 | 1 | 1 | 151 | 1 | 152 | 1.24e-76 | 224 |
Msa1238170 | MtrunA17_Chr8g0355781 | 68.421 | 152 | 47 | 1 | 1 | 151 | 1 | 152 | 9.96e-76 | 222 |
Msa1238170 | MtrunA17_Chr8g0355641 | 66.026 | 156 | 52 | 1 | 1 | 155 | 1 | 156 | 1.15e-75 | 222 |
Msa1238170 | MtrunA17_Chr1g0160371 | 45.098 | 153 | 80 | 3 | 1 | 150 | 1 | 152 | 2.97e-40 | 132 |
Msa1238170 | MtrunA17_Chr1g0160381 | 39.869 | 153 | 88 | 3 | 1 | 150 | 5 | 156 | 2.05e-37 | 125 |
Msa1238170 | MtrunA17_Chr1g0160391 | 40.385 | 156 | 84 | 5 | 1 | 148 | 1 | 155 | 1.34e-30 | 108 |
Msa1238170 | MtrunA17_Chr8g0339261 | 33.333 | 150 | 96 | 4 | 6 | 153 | 8 | 155 | 1.28e-25 | 95.5 |
Msa1238170 | MtrunA17_Chr1g0160801 | 39.189 | 148 | 80 | 6 | 7 | 151 | 7 | 147 | 2.21e-23 | 89.7 |
Msa1238170 | MtrunA17_Chr1g0160351 | 41.935 | 93 | 51 | 2 | 61 | 150 | 1 | 93 | 6.07e-20 | 79.3 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa1238170 | AT1G70840.1 | 35.948 | 153 | 94 | 4 | 3 | 152 | 20 | 171 | 7.22e-26 | 97.1 |
Msa1238170 | AT1G70830.5 | 37.255 | 153 | 92 | 4 | 3 | 152 | 22 | 173 | 1.63e-25 | 96.3 |
Msa1238170 | AT5G28010.1 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.27e-25 | 95.5 |
Msa1238170 | AT5G28010.2 | 35.294 | 153 | 95 | 4 | 3 | 152 | 15 | 166 | 2.27e-25 | 95.5 |
Msa1238170 | AT1G70830.3 | 37.013 | 154 | 93 | 4 | 3 | 153 | 22 | 174 | 2.37e-25 | 96.7 |
Msa1238170 | AT1G70890.1 | 36.601 | 153 | 93 | 4 | 3 | 152 | 7 | 158 | 5.79e-25 | 94.4 |
Msa1238170 | AT1G70830.2 | 37.013 | 154 | 93 | 4 | 3 | 153 | 22 | 174 | 1.85e-24 | 95.1 |
Msa1238170 | AT1G70830.1 | 37.013 | 154 | 93 | 4 | 3 | 153 | 22 | 174 | 3.23e-24 | 96.3 |
Msa1238170 | AT1G70830.1 | 35.948 | 153 | 94 | 4 | 3 | 152 | 184 | 335 | 1.06e-22 | 92.0 |
Msa1238170 | AT1G70830.4 | 35.948 | 153 | 94 | 4 | 3 | 152 | 137 | 288 | 3.03e-23 | 92.8 |
Msa1238170 | AT1G70830.4 | 32.990 | 97 | 63 | 2 | 59 | 153 | 31 | 127 | 4.96e-11 | 59.7 |
Msa1238170 | AT5G28000.1 | 32.680 | 153 | 99 | 4 | 3 | 152 | 13 | 164 | 3.31e-22 | 87.4 |
Msa1238170 | AT4G23670.1 | 35.294 | 153 | 95 | 4 | 1 | 151 | 1 | 151 | 6.45e-22 | 86.3 |
Msa1238170 | AT1G70850.2 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 8.85e-22 | 88.2 |
Msa1238170 | AT1G70850.3 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 2.13e-21 | 88.6 |
Msa1238170 | AT1G70850.3 | 36.364 | 143 | 87 | 4 | 13 | 152 | 175 | 316 | 3.28e-21 | 87.8 |
Msa1238170 | AT1G70850.1 | 34.667 | 150 | 94 | 4 | 3 | 149 | 9 | 157 | 2.13e-21 | 88.6 |
Msa1238170 | AT1G70850.1 | 36.364 | 143 | 87 | 4 | 13 | 152 | 175 | 316 | 3.28e-21 | 87.8 |
Msa1238170 | AT1G14930.1 | 31.210 | 157 | 104 | 4 | 1 | 155 | 1 | 155 | 2.37e-21 | 84.7 |
Msa1238170 | AT2G01520.1 | 31.373 | 153 | 101 | 4 | 1 | 151 | 1 | 151 | 9.67e-21 | 83.2 |
Msa1238170 | AT2G01530.1 | 32.680 | 153 | 99 | 4 | 1 | 151 | 1 | 151 | 9.50e-20 | 80.5 |
Msa1238170 | AT1G14940.1 | 29.299 | 157 | 107 | 4 | 1 | 155 | 1 | 155 | 9.57e-19 | 78.2 |
Msa1238170 | AT1G70870.1 | 35.484 | 155 | 78 | 5 | 1 | 150 | 1 | 138 | 3.12e-18 | 76.3 |
Msa1238170 | AT1G14950.1 | 30.573 | 157 | 105 | 4 | 1 | 155 | 1 | 155 | 6.83e-18 | 75.9 |
Msa1238170 | AT4G14060.1 | 30.065 | 153 | 103 | 4 | 1 | 151 | 1 | 151 | 7.55e-18 | 75.9 |
Msa1238170 | AT1G23130.1 | 28.859 | 149 | 103 | 3 | 3 | 149 | 10 | 157 | 8.87e-18 | 75.9 |
Msa1238170 | AT4G23680.1 | 30.263 | 152 | 102 | 4 | 1 | 150 | 1 | 150 | 3.51e-17 | 73.9 |
Msa1238170 | AT1G70880.1 | 29.412 | 153 | 104 | 4 | 3 | 152 | 8 | 159 | 3.58e-17 | 74.3 |
Msa1238170 | AT1G35260.1 | 30.556 | 144 | 95 | 4 | 9 | 149 | 8 | 149 | 4.58e-17 | 73.6 |
Msa1238170 | AT1G23120.1 | 28.000 | 150 | 100 | 5 | 3 | 149 | 1 | 145 | 8.80e-16 | 70.5 |
Msa1238170 | AT1G30990.1 | 29.801 | 151 | 101 | 5 | 1 | 149 | 1 | 148 | 9.41e-16 | 70.5 |
Msa1238170 | AT1G23120.2 | 26.950 | 141 | 97 | 4 | 10 | 149 | 60 | 195 | 2.39e-15 | 70.1 |
Msa1238170 | AT1G14960.1 | 29.032 | 155 | 106 | 4 | 1 | 153 | 1 | 153 | 4.67e-15 | 68.6 |
Msa1238170 | AT1G24020.1 | 31.613 | 155 | 97 | 4 | 1 | 150 | 1 | 151 | 2.01e-14 | 67.0 |
Msa1238170 | AT1G24020.2 | 31.613 | 155 | 97 | 4 | 1 | 150 | 1 | 151 | 2.01e-14 | 67.0 |
Msa1238170 | AT1G35310.1 | 28.777 | 139 | 95 | 4 | 13 | 149 | 12 | 148 | 9.53e-14 | 65.1 |
Msa1238170 | AT3G26460.1 | 26.797 | 153 | 109 | 3 | 1 | 151 | 1 | 152 | 9.73e-14 | 65.1 |
Msa1238170 | AT3G26450.1 | 25.325 | 154 | 110 | 5 | 1 | 151 | 1 | 152 | 7.12e-12 | 60.1 |
Msa1238170 | AT1G14940.2 | 26.115 | 157 | 96 | 4 | 1 | 155 | 1 | 139 | 9.94e-12 | 59.3 |
Find 40 sgRNAs with CRISPR-Local
Find 204 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CAATTCTTCTTCAAAATAAT+TGG | 0.142347 | 8_2:+18082932 | Msa1238170:three_prime_UTR |
AAGATACTAAATAATAAATA+AGG | 0.212177 | 8_2:-18080800 | None:intergenic |
AAAATCACTTACAAGCTATT+TGG | 0.220413 | 8_2:+18082482 | Msa1238170:CDS |
TCATAAAGATATTTGAATTA+TGG | 0.240516 | 8_2:+18082711 | Msa1238170:three_prime_UTR |
GTCTTTAAGCTCATCTTAGA+AGG | 0.291250 | 8_2:+18082527 | Msa1238170:CDS |
ATCTTCACCTTCATGAAGTT+TGG | 0.299460 | 8_2:-18080951 | None:intergenic |
AATTGTGTGATGCAAATAAA+TGG | 0.318220 | 8_2:+18082868 | Msa1238170:three_prime_UTR |
AACATTAATGAAAGAGTTCA+TGG | 0.350725 | 8_2:+18080926 | Msa1238170:CDS |
TATTTGAATTATGGTTCAAT+GGG | 0.403324 | 8_2:+18082720 | Msa1238170:three_prime_UTR |
ATGGAAGTTCTGCTGTTAGA+TGG | 0.407851 | 8_2:+18082564 | Msa1238170:CDS |
GGTAAACTTATTACTGAACT+TGG | 0.415223 | 8_2:+18080842 | Msa1238170:CDS |
CTAGTGTGATGTTTGTGTTT+TGG | 0.419947 | 8_2:+18082788 | Msa1238170:three_prime_UTR |
GAATTATGGTTCAATGGGGT+TGG | 0.420941 | 8_2:+18082725 | Msa1238170:three_prime_UTR |
TGGAGATCTTGAAAACTATA+AGG | 0.428906 | 8_2:+18082505 | Msa1238170:CDS |
ATATTTGAATTATGGTTCAA+TGG | 0.435694 | 8_2:+18082719 | Msa1238170:three_prime_UTR |
AGGAAATCCATCCATCCATT+TGG | 0.440781 | 8_2:-18082626 | None:intergenic |
AAACACTGGACTTATGTCAT+AGG | 0.470664 | 8_2:+18080995 | Msa1238170:CDS |
ATCACTTACAAGCTATTTGG+TGG | 0.474679 | 8_2:+18082485 | Msa1238170:CDS |
AAAAGCACTAGAGATATTGA+TGG | 0.477335 | 8_2:+18082653 | Msa1238170:CDS |
AGATACTAAATAATAAATAA+GGG | 0.482862 | 8_2:-18080799 | None:intergenic |
AACTTCATGAAGGTGAAGAT+TGG | 0.494334 | 8_2:+18080954 | Msa1238170:CDS |
TCATCTTGTCAAAGGGGAAA+AGG | 0.504175 | 8_2:+18082676 | Msa1238170:CDS |
AGATTGGCATCATACTGATT+CGG | 0.504369 | 8_2:+18080970 | Msa1238170:CDS |
TTGATGGTCATCTTGTCAAA+GGG | 0.506740 | 8_2:+18082669 | Msa1238170:CDS |
GAGGATATCGATACTCCAAA+TGG | 0.515854 | 8_2:+18082611 | Msa1238170:CDS |
CGATACTCCAAATGGATGGA+TGG | 0.534738 | 8_2:+18082619 | Msa1238170:CDS |
GTAAACTTATTACTGAACTT+GGG | 0.542207 | 8_2:+18080843 | Msa1238170:CDS |
ATTGATGGTCATCTTGTCAA+AGG | 0.543582 | 8_2:+18082668 | Msa1238170:CDS |
TCTTTAAGCTCATCTTAGAA+GGG | 0.545692 | 8_2:+18082528 | Msa1238170:CDS |
AGTTTGTAGAACTTGTCAGC+TGG | 0.569465 | 8_2:-18080875 | None:intergenic |
GAAGGGCTTAACAAGGCTGA+TGG | 0.584478 | 8_2:+18082545 | Msa1238170:CDS |
TTTGTATCGAATATATGTGT+CGG | 0.588014 | 8_2:+18082821 | Msa1238170:three_prime_UTR |
ATATCGATACTCCAAATGGA+TGG | 0.593139 | 8_2:+18082615 | Msa1238170:CDS |
ATACTGATTCGGTTAAACAC+TGG | 0.606046 | 8_2:+18080981 | Msa1238170:CDS |
CATCTTAGAAGGGCTTAACA+AGG | 0.611102 | 8_2:+18082538 | Msa1238170:CDS |
CATGGTGCCAAACTTCATGA+AGG | 0.632424 | 8_2:+18080944 | Msa1238170:CDS |
ATTTGAATTATGGTTCAATG+GGG | 0.632915 | 8_2:+18082721 | Msa1238170:three_prime_UTR |
TGATGGTCATCTTGTCAAAG+GGG | 0.652198 | 8_2:+18082670 | Msa1238170:CDS |
TGACGTAATAACAGATGGCG+AGG | 0.668621 | 8_2:+18082412 | Msa1238170:intron |
TGATTATGAGAAGAACAATG+AGG | 0.681814 | 8_2:+18082592 | Msa1238170:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | CTTAATTATCAAAAAAATAA+TGG | - | chr8_2:18081392-18081411 | None:intergenic | 10.0% |
!! | ATATATATTATTCGAAAAAA+AGG | + | chr8_2:18081436-18081455 | Msa1238170:intron | 10.0% |
!!! | ATTTTTAAAAAAATGTGAAA+GGG | + | chr8_2:18082042-18082061 | Msa1238170:intron | 10.0% |
!!! | TATCTTATTATAATATTTTC+TGG | + | chr8_2:18082320-18082339 | Msa1238170:intron | 10.0% |
!! | CTTAATTATCAAAAAAATAA+TGG | - | chr8_2:18081392-18081411 | None:intergenic | 10.0% |
!! | ATATATATTATTCGAAAAAA+AGG | + | chr8_2:18081436-18081455 | Msa1238170:intron | 10.0% |
!!! | ATTTTTAAAAAAATGTGAAA+GGG | + | chr8_2:18082042-18082061 | Msa1238170:intron | 10.0% |
!!! | TATCTTATTATAATATTTTC+TGG | + | chr8_2:18082320-18082339 | Msa1238170:intron | 10.0% |
!!! | GTTTTCTATTACAAATTTTT+TGG | + | chr8_2:18081078-18081097 | Msa1238170:intron | 15.0% |
!! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8_2:18081109-18081128 | Msa1238170:intron | 15.0% |
!! | AAATTCTAAATTATGTCAAT+AGG | - | chr8_2:18081223-18081242 | None:intergenic | 15.0% |
!! | GAATAATATATATTATGAGT+GGG | - | chr8_2:18081429-18081448 | None:intergenic | 15.0% |
!! | TAAATTTACTATGAAATAGT+AGG | + | chr8_2:18081716-18081735 | Msa1238170:intron | 15.0% |
!! | AAATTTACTATGAAATAGTA+GGG | + | chr8_2:18081717-18081736 | Msa1238170:intron | 15.0% |
!!! | GGATTTATATTTTGTTTTTT+AGG | + | chr8_2:18081957-18081976 | Msa1238170:intron | 15.0% |
!!! | CATTTTTAAAAAAATGTGAA+AGG | + | chr8_2:18082041-18082060 | Msa1238170:intron | 15.0% |
!!! | ATCTTTAAATAGTATTTTAG+AGG | + | chr8_2:18082134-18082153 | Msa1238170:intron | 15.0% |
!! | TCATAAAGATATTTGAATTA+TGG | + | chr8_2:18082711-18082730 | Msa1238170:three_prime_UTR | 15.0% |
!!! | GTTTTCTATTACAAATTTTT+TGG | + | chr8_2:18081078-18081097 | Msa1238170:intron | 15.0% |
!! | TATAGTAATAAAAAGAAGAT+TGG | + | chr8_2:18081109-18081128 | Msa1238170:intron | 15.0% |
!! | AAATTCTAAATTATGTCAAT+AGG | - | chr8_2:18081223-18081242 | None:intergenic | 15.0% |
!! | GAATAATATATATTATGAGT+GGG | - | chr8_2:18081429-18081448 | None:intergenic | 15.0% |
!! | TAAATTTACTATGAAATAGT+AGG | + | chr8_2:18081716-18081735 | Msa1238170:intron | 15.0% |
!! | AAATTTACTATGAAATAGTA+GGG | + | chr8_2:18081717-18081736 | Msa1238170:intron | 15.0% |
!!! | GGATTTATATTTTGTTTTTT+AGG | + | chr8_2:18081957-18081976 | Msa1238170:intron | 15.0% |
!!! | CATTTTTAAAAAAATGTGAA+AGG | + | chr8_2:18082041-18082060 | Msa1238170:intron | 15.0% |
!!! | ATCTTTAAATAGTATTTTAG+AGG | + | chr8_2:18082134-18082153 | Msa1238170:intron | 15.0% |
!! | TCATAAAGATATTTGAATTA+TGG | + | chr8_2:18082711-18082730 | Msa1238170:three_prime_UTR | 15.0% |
!! | ATTTAGTATCTTTCCAAAAA+TGG | + | chr8_2:18080811-18080830 | Msa1238170:exon | 20.0% |
!! | CGAATAATATATATTATGAG+TGG | - | chr8_2:18081430-18081449 | None:intergenic | 20.0% |
!!! | GTATAATTTTTTCTTTACGA+TGG | + | chr8_2:18081542-18081561 | Msa1238170:intron | 20.0% |
!!! | CCTTAAAGTTTTTAGTAAAA+CGG | + | chr8_2:18081648-18081667 | Msa1238170:intron | 20.0% |
!!! | TATGTATTTGATTTATGCTT+AGG | + | chr8_2:18081747-18081766 | Msa1238170:intron | 20.0% |
!!! | TTTTGTTTTTTAGGATACAA+AGG | + | chr8_2:18081966-18081985 | Msa1238170:intron | 20.0% |
!!! | CAATAAAATACGTTTTTCAA+AGG | - | chr8_2:18082372-18082391 | None:intergenic | 20.0% |
!! | ATATTTGAATTATGGTTCAA+TGG | + | chr8_2:18082719-18082738 | Msa1238170:three_prime_UTR | 20.0% |
!! | TATTTGAATTATGGTTCAAT+GGG | + | chr8_2:18082720-18082739 | Msa1238170:three_prime_UTR | 20.0% |
!! | CAATTCTTCTTCAAAATAAT+TGG | + | chr8_2:18082932-18082951 | Msa1238170:three_prime_UTR | 20.0% |
!! | ATTTAGTATCTTTCCAAAAA+TGG | + | chr8_2:18080811-18080830 | Msa1238170:exon | 20.0% |
!! | CGAATAATATATATTATGAG+TGG | - | chr8_2:18081430-18081449 | None:intergenic | 20.0% |
!!! | GTATAATTTTTTCTTTACGA+TGG | + | chr8_2:18081542-18081561 | Msa1238170:intron | 20.0% |
!!! | CCTTAAAGTTTTTAGTAAAA+CGG | + | chr8_2:18081648-18081667 | Msa1238170:intron | 20.0% |
!!! | TATGTATTTGATTTATGCTT+AGG | + | chr8_2:18081747-18081766 | Msa1238170:intron | 20.0% |
!!! | TTTTGTTTTTTAGGATACAA+AGG | + | chr8_2:18081966-18081985 | Msa1238170:intron | 20.0% |
!!! | CAATAAAATACGTTTTTCAA+AGG | - | chr8_2:18082372-18082391 | None:intergenic | 20.0% |
!! | ATATTTGAATTATGGTTCAA+TGG | + | chr8_2:18082719-18082738 | Msa1238170:three_prime_UTR | 20.0% |
!! | TATTTGAATTATGGTTCAAT+GGG | + | chr8_2:18082720-18082739 | Msa1238170:three_prime_UTR | 20.0% |
!! | CAATTCTTCTTCAAAATAAT+TGG | + | chr8_2:18082932-18082951 | Msa1238170:three_prime_UTR | 20.0% |
! | GTAAACTTATTACTGAACTT+GGG | + | chr8_2:18080843-18080862 | Msa1238170:CDS | 25.0% |
! | AACATTAATGAAAGAGTTCA+TGG | + | chr8_2:18080926-18080945 | Msa1238170:CDS | 25.0% |
! | AGTATCATTTGTTTCCTTTA+AGG | - | chr8_2:18081494-18081513 | None:intergenic | 25.0% |
! | TTATCTCTAGACAAAAAATC+TGG | - | chr8_2:18081579-18081598 | None:intergenic | 25.0% |
! | TTTGTCTAGAGATAAAAAGT+AGG | + | chr8_2:18081584-18081603 | Msa1238170:intron | 25.0% |
! | TTGTCTAGAGATAAAAAGTA+GGG | + | chr8_2:18081585-18081604 | Msa1238170:intron | 25.0% |
! | GTTTGTATAATATGATCCTT+CGG | + | chr8_2:18081607-18081626 | Msa1238170:intron | 25.0% |
!! | CCGTTTTACTAAAAACTTTA+AGG | - | chr8_2:18081651-18081670 | None:intergenic | 25.0% |
!! | TCATTTTACAACAGTAATGT+GGG | + | chr8_2:18081936-18081955 | Msa1238170:intron | 25.0% |
!!! | GTGCTTTATTTAAAGATCTA+AGG | - | chr8_2:18082079-18082098 | None:intergenic | 25.0% |
! | AACAATGCATAATATATGCA+AGG | + | chr8_2:18082198-18082217 | Msa1238170:intron | 25.0% |
! | AAAATCACTTACAAGCTATT+TGG | + | chr8_2:18082482-18082501 | Msa1238170:CDS | 25.0% |
! | ATTTGAATTATGGTTCAATG+GGG | + | chr8_2:18082721-18082740 | Msa1238170:three_prime_UTR | 25.0% |
! | TTTGTATCGAATATATGTGT+CGG | + | chr8_2:18082821-18082840 | Msa1238170:three_prime_UTR | 25.0% |
! | AATTGTGTGATGCAAATAAA+TGG | + | chr8_2:18082868-18082887 | Msa1238170:three_prime_UTR | 25.0% |
! | GTAAACTTATTACTGAACTT+GGG | + | chr8_2:18080843-18080862 | Msa1238170:CDS | 25.0% |
! | AACATTAATGAAAGAGTTCA+TGG | + | chr8_2:18080926-18080945 | Msa1238170:CDS | 25.0% |
! | AGTATCATTTGTTTCCTTTA+AGG | - | chr8_2:18081494-18081513 | None:intergenic | 25.0% |
! | TTATCTCTAGACAAAAAATC+TGG | - | chr8_2:18081579-18081598 | None:intergenic | 25.0% |
! | TTTGTCTAGAGATAAAAAGT+AGG | + | chr8_2:18081584-18081603 | Msa1238170:intron | 25.0% |
! | TTGTCTAGAGATAAAAAGTA+GGG | + | chr8_2:18081585-18081604 | Msa1238170:intron | 25.0% |
! | GTTTGTATAATATGATCCTT+CGG | + | chr8_2:18081607-18081626 | Msa1238170:intron | 25.0% |
!! | CCGTTTTACTAAAAACTTTA+AGG | - | chr8_2:18081651-18081670 | None:intergenic | 25.0% |
!! | TCATTTTACAACAGTAATGT+GGG | + | chr8_2:18081936-18081955 | Msa1238170:intron | 25.0% |
!!! | GTGCTTTATTTAAAGATCTA+AGG | - | chr8_2:18082079-18082098 | None:intergenic | 25.0% |
! | AACAATGCATAATATATGCA+AGG | + | chr8_2:18082198-18082217 | Msa1238170:intron | 25.0% |
! | AAAATCACTTACAAGCTATT+TGG | + | chr8_2:18082482-18082501 | Msa1238170:CDS | 25.0% |
! | ATTTGAATTATGGTTCAATG+GGG | + | chr8_2:18082721-18082740 | Msa1238170:three_prime_UTR | 25.0% |
! | TTTGTATCGAATATATGTGT+CGG | + | chr8_2:18082821-18082840 | Msa1238170:three_prime_UTR | 25.0% |
! | AATTGTGTGATGCAAATAAA+TGG | + | chr8_2:18082868-18082887 | Msa1238170:three_prime_UTR | 25.0% |
GGTAAACTTATTACTGAACT+TGG | + | chr8_2:18080842-18080861 | Msa1238170:CDS | 30.0% | |
TCTTCGTTATAGATCTCATT+TGG | - | chr8_2:18081149-18081168 | None:intergenic | 30.0% | |
TATTGCCTTCATTGTTAGAT+CGG | - | chr8_2:18081194-18081213 | None:intergenic | 30.0% | |
AAAGCAACAAATGACCTTAA+AGG | + | chr8_2:18081477-18081496 | Msa1238170:intron | 30.0% | |
AAATGATACTCAACCATCTT+TGG | + | chr8_2:18081504-18081523 | Msa1238170:intron | 30.0% | |
! | TGCCATGATTTGTAATTTCA+TGG | + | chr8_2:18081818-18081837 | Msa1238170:intron | 30.0% |
AGCCATGAAATTACAAATCA+TGG | - | chr8_2:18081823-18081842 | None:intergenic | 30.0% | |
TAATTTCATGGCTCTTTCTT+GGG | + | chr8_2:18081830-18081849 | Msa1238170:intron | 30.0% | |
!! | GTCATTTTACAACAGTAATG+TGG | + | chr8_2:18081935-18081954 | Msa1238170:intron | 30.0% |
TGGAGATCTTGAAAACTATA+AGG | + | chr8_2:18082505-18082524 | Msa1238170:CDS | 30.0% | |
TCTTTAAGCTCATCTTAGAA+GGG | + | chr8_2:18082528-18082547 | Msa1238170:CDS | 30.0% | |
TGATTATGAGAAGAACAATG+AGG | + | chr8_2:18082592-18082611 | Msa1238170:CDS | 30.0% | |
!! | AAAAGCACTAGAGATATTGA+TGG | + | chr8_2:18082653-18082672 | Msa1238170:CDS | 30.0% |
GGTAAACTTATTACTGAACT+TGG | + | chr8_2:18080842-18080861 | Msa1238170:CDS | 30.0% | |
TCTTCGTTATAGATCTCATT+TGG | - | chr8_2:18081149-18081168 | None:intergenic | 30.0% | |
TATTGCCTTCATTGTTAGAT+CGG | - | chr8_2:18081194-18081213 | None:intergenic | 30.0% | |
AAAGCAACAAATGACCTTAA+AGG | + | chr8_2:18081477-18081496 | Msa1238170:intron | 30.0% | |
AAATGATACTCAACCATCTT+TGG | + | chr8_2:18081504-18081523 | Msa1238170:intron | 30.0% | |
! | TGCCATGATTTGTAATTTCA+TGG | + | chr8_2:18081818-18081837 | Msa1238170:intron | 30.0% |
AGCCATGAAATTACAAATCA+TGG | - | chr8_2:18081823-18081842 | None:intergenic | 30.0% | |
TAATTTCATGGCTCTTTCTT+GGG | + | chr8_2:18081830-18081849 | Msa1238170:intron | 30.0% | |
!! | GTCATTTTACAACAGTAATG+TGG | + | chr8_2:18081935-18081954 | Msa1238170:intron | 30.0% |
TGGAGATCTTGAAAACTATA+AGG | + | chr8_2:18082505-18082524 | Msa1238170:CDS | 30.0% | |
TCTTTAAGCTCATCTTAGAA+GGG | + | chr8_2:18082528-18082547 | Msa1238170:CDS | 30.0% | |
TGATTATGAGAAGAACAATG+AGG | + | chr8_2:18082592-18082611 | Msa1238170:CDS | 30.0% | |
!! | AAAAGCACTAGAGATATTGA+TGG | + | chr8_2:18082653-18082672 | Msa1238170:CDS | 30.0% |
ATCTTCACCTTCATGAAGTT+TGG | - | chr8_2:18080954-18080973 | None:intergenic | 35.0% | |
AACTTCATGAAGGTGAAGAT+TGG | + | chr8_2:18080954-18080973 | Msa1238170:CDS | 35.0% | |
! | AGATTGGCATCATACTGATT+CGG | + | chr8_2:18080970-18080989 | Msa1238170:CDS | 35.0% |
!! | ATACTGATTCGGTTAAACAC+TGG | + | chr8_2:18080981-18081000 | Msa1238170:CDS | 35.0% |
AAACACTGGACTTATGTCAT+AGG | + | chr8_2:18080995-18081014 | Msa1238170:CDS | 35.0% | |
TGATTTATGCTTAGGTGTTC+AGG | + | chr8_2:18081755-18081774 | Msa1238170:intron | 35.0% | |
GTAATTTCATGGCTCTTTCT+TGG | + | chr8_2:18081829-18081848 | Msa1238170:intron | 35.0% | |
GCATAATATATGCAAGGTTC+AGG | + | chr8_2:18082204-18082223 | Msa1238170:intron | 35.0% | |
!!! | GAATGCCTCTTTCTTTTTTG+TGG | - | chr8_2:18082245-18082264 | None:intergenic | 35.0% |
ATCACTTACAAGCTATTTGG+TGG | + | chr8_2:18082485-18082504 | Msa1238170:CDS | 35.0% | |
GTCTTTAAGCTCATCTTAGA+AGG | + | chr8_2:18082527-18082546 | Msa1238170:CDS | 35.0% | |
ATATCGATACTCCAAATGGA+TGG | + | chr8_2:18082615-18082634 | Msa1238170:CDS | 35.0% | |
! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8_2:18082649-18082668 | None:intergenic | 35.0% |
! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8_2:18082668-18082687 | Msa1238170:CDS | 35.0% |
! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8_2:18082669-18082688 | Msa1238170:CDS | 35.0% |
! | CTAGTGTGATGTTTGTGTTT+TGG | + | chr8_2:18082788-18082807 | Msa1238170:three_prime_UTR | 35.0% |
ATCTTCACCTTCATGAAGTT+TGG | - | chr8_2:18080954-18080973 | None:intergenic | 35.0% | |
AACTTCATGAAGGTGAAGAT+TGG | + | chr8_2:18080954-18080973 | Msa1238170:CDS | 35.0% | |
! | AGATTGGCATCATACTGATT+CGG | + | chr8_2:18080970-18080989 | Msa1238170:CDS | 35.0% |
!! | ATACTGATTCGGTTAAACAC+TGG | + | chr8_2:18080981-18081000 | Msa1238170:CDS | 35.0% |
AAACACTGGACTTATGTCAT+AGG | + | chr8_2:18080995-18081014 | Msa1238170:CDS | 35.0% | |
TGATTTATGCTTAGGTGTTC+AGG | + | chr8_2:18081755-18081774 | Msa1238170:intron | 35.0% | |
GTAATTTCATGGCTCTTTCT+TGG | + | chr8_2:18081829-18081848 | Msa1238170:intron | 35.0% | |
GCATAATATATGCAAGGTTC+AGG | + | chr8_2:18082204-18082223 | Msa1238170:intron | 35.0% | |
!!! | GAATGCCTCTTTCTTTTTTG+TGG | - | chr8_2:18082245-18082264 | None:intergenic | 35.0% |
ATCACTTACAAGCTATTTGG+TGG | + | chr8_2:18082485-18082504 | Msa1238170:CDS | 35.0% | |
GTCTTTAAGCTCATCTTAGA+AGG | + | chr8_2:18082527-18082546 | Msa1238170:CDS | 35.0% | |
ATATCGATACTCCAAATGGA+TGG | + | chr8_2:18082615-18082634 | Msa1238170:CDS | 35.0% | |
! | TATCTCTAGTGCTTTTGCTA+AGG | - | chr8_2:18082649-18082668 | None:intergenic | 35.0% |
! | ATTGATGGTCATCTTGTCAA+AGG | + | chr8_2:18082668-18082687 | Msa1238170:CDS | 35.0% |
! | TTGATGGTCATCTTGTCAAA+GGG | + | chr8_2:18082669-18082688 | Msa1238170:CDS | 35.0% |
! | CTAGTGTGATGTTTGTGTTT+TGG | + | chr8_2:18082788-18082807 | Msa1238170:three_prime_UTR | 35.0% |
TTTCCAAAAATGGTGCTTGC+TGG | + | chr8_2:18080821-18080840 | Msa1238170:exon | 40.0% | |
! | TTACCAGCAAGCACCATTTT+TGG | - | chr8_2:18080827-18080846 | None:intergenic | 40.0% |
AGTTTGTAGAACTTGTCAGC+TGG | - | chr8_2:18080878-18080897 | None:intergenic | 40.0% | |
TATCGAAATCATTGCACACG+AGG | + | chr8_2:18081327-18081346 | Msa1238170:intron | 40.0% | |
! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8_2:18081626-18081645 | None:intergenic | 40.0% |
!!! | TCTTTCTTTTTTGTGGTGGC+CGG | - | chr8_2:18082238-18082257 | None:intergenic | 40.0% |
!!! | TGCCTCTTTCTTTTTTGTGG+TGG | - | chr8_2:18082242-18082261 | None:intergenic | 40.0% |
CATCTTAGAAGGGCTTAACA+AGG | + | chr8_2:18082538-18082557 | Msa1238170:CDS | 40.0% | |
ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8_2:18082564-18082583 | Msa1238170:CDS | 40.0% | |
GAGGATATCGATACTCCAAA+TGG | + | chr8_2:18082611-18082630 | Msa1238170:CDS | 40.0% | |
AGGAAATCCATCCATCCATT+TGG | - | chr8_2:18082629-18082648 | None:intergenic | 40.0% | |
TGATGGTCATCTTGTCAAAG+GGG | + | chr8_2:18082670-18082689 | Msa1238170:CDS | 40.0% | |
TCATCTTGTCAAAGGGGAAA+AGG | + | chr8_2:18082676-18082695 | Msa1238170:CDS | 40.0% | |
GAATTATGGTTCAATGGGGT+TGG | + | chr8_2:18082725-18082744 | Msa1238170:three_prime_UTR | 40.0% | |
!!! | TTCAATGGGGTTGGCTTTTA+TGG | + | chr8_2:18082734-18082753 | Msa1238170:three_prime_UTR | 40.0% |
TTTCCAAAAATGGTGCTTGC+TGG | + | chr8_2:18080821-18080840 | Msa1238170:exon | 40.0% | |
! | TTACCAGCAAGCACCATTTT+TGG | - | chr8_2:18080827-18080846 | None:intergenic | 40.0% |
AGTTTGTAGAACTTGTCAGC+TGG | - | chr8_2:18080878-18080897 | None:intergenic | 40.0% | |
TATCGAAATCATTGCACACG+AGG | + | chr8_2:18081327-18081346 | Msa1238170:intron | 40.0% | |
! | CGTCTTTAGACATTTTCCGA+AGG | - | chr8_2:18081626-18081645 | None:intergenic | 40.0% |
!!! | TCTTTCTTTTTTGTGGTGGC+CGG | - | chr8_2:18082238-18082257 | None:intergenic | 40.0% |
!!! | TGCCTCTTTCTTTTTTGTGG+TGG | - | chr8_2:18082242-18082261 | None:intergenic | 40.0% |
CATCTTAGAAGGGCTTAACA+AGG | + | chr8_2:18082538-18082557 | Msa1238170:CDS | 40.0% | |
ATGGAAGTTCTGCTGTTAGA+TGG | + | chr8_2:18082564-18082583 | Msa1238170:CDS | 40.0% | |
GAGGATATCGATACTCCAAA+TGG | + | chr8_2:18082611-18082630 | Msa1238170:CDS | 40.0% | |
AGGAAATCCATCCATCCATT+TGG | - | chr8_2:18082629-18082648 | None:intergenic | 40.0% | |
TGATGGTCATCTTGTCAAAG+GGG | + | chr8_2:18082670-18082689 | Msa1238170:CDS | 40.0% | |
TCATCTTGTCAAAGGGGAAA+AGG | + | chr8_2:18082676-18082695 | Msa1238170:CDS | 40.0% | |
GAATTATGGTTCAATGGGGT+TGG | + | chr8_2:18082725-18082744 | Msa1238170:three_prime_UTR | 40.0% | |
!!! | TTCAATGGGGTTGGCTTTTA+TGG | + | chr8_2:18082734-18082753 | Msa1238170:three_prime_UTR | 40.0% |
! | CATGGTGCCAAACTTCATGA+AGG | + | chr8_2:18080944-18080963 | Msa1238170:CDS | 45.0% |
CGAGACCGATCTAACAATGA+AGG | + | chr8_2:18081186-18081205 | Msa1238170:intron | 45.0% | |
CAACCATCTTTGGATTCACG+TGG | + | chr8_2:18081514-18081533 | Msa1238170:intron | 45.0% | |
GTACCACGTGAATCCAAAGA+TGG | - | chr8_2:18081520-18081539 | None:intergenic | 45.0% | |
TCTTGGGTGCAATGTATGCT+TGG | + | chr8_2:18081846-18081865 | Msa1238170:intron | 45.0% | |
CTTGGGTGCAATGTATGCTT+GGG | + | chr8_2:18081847-18081866 | Msa1238170:intron | 45.0% | |
! | CAAGGTTCAGGTTCAAATCC+CGG | + | chr8_2:18082216-18082235 | Msa1238170:intron | 45.0% |
!!! | CTTTCTTTTTTGTGGTGGCC+GGG | - | chr8_2:18082237-18082256 | None:intergenic | 45.0% |
GGCCACCACAAAAAAGAAAG+AGG | + | chr8_2:18082237-18082256 | Msa1238170:intron | 45.0% | |
GCCTCTGACGTAATAACAGA+TGG | + | chr8_2:18082407-18082426 | Msa1238170:intron | 45.0% | |
GCCATCTGTTATTACGTCAG+AGG | - | chr8_2:18082411-18082430 | None:intergenic | 45.0% | |
TGACGTAATAACAGATGGCG+AGG | + | chr8_2:18082412-18082431 | Msa1238170:intron | 45.0% | |
CGATACTCCAAATGGATGGA+TGG | + | chr8_2:18082619-18082638 | Msa1238170:CDS | 45.0% | |
! | CATGGTGCCAAACTTCATGA+AGG | + | chr8_2:18080944-18080963 | Msa1238170:CDS | 45.0% |
CGAGACCGATCTAACAATGA+AGG | + | chr8_2:18081186-18081205 | Msa1238170:intron | 45.0% | |
CAACCATCTTTGGATTCACG+TGG | + | chr8_2:18081514-18081533 | Msa1238170:intron | 45.0% | |
GTACCACGTGAATCCAAAGA+TGG | - | chr8_2:18081520-18081539 | None:intergenic | 45.0% | |
TCTTGGGTGCAATGTATGCT+TGG | + | chr8_2:18081846-18081865 | Msa1238170:intron | 45.0% | |
CTTGGGTGCAATGTATGCTT+GGG | + | chr8_2:18081847-18081866 | Msa1238170:intron | 45.0% | |
! | CAAGGTTCAGGTTCAAATCC+CGG | + | chr8_2:18082216-18082235 | Msa1238170:intron | 45.0% |
!!! | CTTTCTTTTTTGTGGTGGCC+GGG | - | chr8_2:18082237-18082256 | None:intergenic | 45.0% |
GGCCACCACAAAAAAGAAAG+AGG | + | chr8_2:18082237-18082256 | Msa1238170:intron | 45.0% | |
GCCTCTGACGTAATAACAGA+TGG | + | chr8_2:18082407-18082426 | Msa1238170:intron | 45.0% | |
GCCATCTGTTATTACGTCAG+AGG | - | chr8_2:18082411-18082430 | None:intergenic | 45.0% | |
TGACGTAATAACAGATGGCG+AGG | + | chr8_2:18082412-18082431 | Msa1238170:intron | 45.0% | |
CGATACTCCAAATGGATGGA+TGG | + | chr8_2:18082619-18082638 | Msa1238170:CDS | 45.0% | |
!!! | TAATTTAGAATTTTTTTAAT+TGG | + | chr8_2:18081230-18081249 | Msa1238170:intron | 5.0% |
!!! | CTATTATTATTTTATTTTTT+TGG | - | chr8_2:18081904-18081923 | None:intergenic | 5.0% |
!!! | TATTATATATTTTTTTAATG+CGG | + | chr8_2:18082276-18082295 | Msa1238170:intron | 5.0% |
!! | TTATAATAAGATAATAATAA+AGG | - | chr8_2:18082313-18082332 | None:intergenic | 5.0% |
!!! | TAATTTAGAATTTTTTTAAT+TGG | + | chr8_2:18081230-18081249 | Msa1238170:intron | 5.0% |
!!! | CTATTATTATTTTATTTTTT+TGG | - | chr8_2:18081904-18081923 | None:intergenic | 5.0% |
!!! | TATTATATATTTTTTTAATG+CGG | + | chr8_2:18082276-18082295 | Msa1238170:intron | 5.0% |
!! | TTATAATAAGATAATAATAA+AGG | - | chr8_2:18082313-18082332 | None:intergenic | 5.0% |
CTTCGTGTGCTTAGCTCAGT+TGG | + | chr8_2:18082171-18082190 | Msa1238170:intron | 50.0% | |
GAAGGGCTTAACAAGGCTGA+TGG | + | chr8_2:18082545-18082564 | Msa1238170:CDS | 50.0% | |
CTTCGTGTGCTTAGCTCAGT+TGG | + | chr8_2:18082171-18082190 | Msa1238170:intron | 50.0% | |
GAAGGGCTTAACAAGGCTGA+TGG | + | chr8_2:18082545-18082564 | Msa1238170:CDS | 50.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr8_2 | gene | 18080801 | 18082995 | 18080801 | ID=Msa1238170;Name=Msa1238170 |
chr8_2 | mRNA | 18080801 | 18082995 | 18080801 | ID=Msa1238170-mRNA-1;Parent=Msa1238170;Name=Msa1238170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=29|1|1|1|1|1|2|286|156 |
chr8_2 | exon | 18080801 | 18081016 | 18080801 | ID=Msa1238170-mRNA-1:exon:6832;Parent=Msa1238170-mRNA-1 |
chr8_2 | exon | 18082426 | 18082995 | 18082426 | ID=Msa1238170-mRNA-1:exon:6833;Parent=Msa1238170-mRNA-1 |
chr8_2 | five_prime_UTR | 18080801 | 18080829 | 18080801 | ID=Msa1238170-mRNA-1:five_prime_utr;Parent=Msa1238170-mRNA-1 |
chr8_2 | CDS | 18080830 | 18081016 | 18080830 | ID=Msa1238170-mRNA-1:cds;Parent=Msa1238170-mRNA-1 |
chr8_2 | CDS | 18082426 | 18082709 | 18082426 | ID=Msa1238170-mRNA-1:cds;Parent=Msa1238170-mRNA-1 |
chr8_2 | three_prime_UTR | 18082710 | 18082995 | 18082710 | ID=Msa1238170-mRNA-1:three_prime_utr;Parent=Msa1238170-mRNA-1 |
Gene Sequence |
Protein sequence |