AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1238170


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238170 MtrunA17_Chr8g0355811 92.949 156 11 0 1 156 1 156 4.28e-106 299
Msa1238170 MtrunA17_Chr8g0355821 84.416 154 24 0 1 154 1 154 1.15e-97 278
Msa1238170 MtrunA17_Chr8g0355801 83.333 156 26 0 1 156 1 156 1.40e-95 273
Msa1238170 MtrunA17_Chr8g0355791 81.410 156 29 0 1 156 1 156 2.69e-92 264
Msa1238170 MtrunA17_Chr8g0355771 80.128 156 31 0 1 156 1 156 4.76e-91 261
Msa1238170 MtrunA17_Chr8g0355741 75.796 157 37 1 1 156 1 157 4.67e-85 246
Msa1238170 MtrunA17_Chr8g0355661 74.522 157 38 2 1 156 1 156 8.52e-85 245
Msa1238170 MtrunA17_Chr8g0355721 71.975 157 42 2 1 156 1 156 3.21e-81 236
Msa1238170 MtrunA17_Chr8g0355761 69.737 152 45 1 1 151 1 152 1.24e-76 224
Msa1238170 MtrunA17_Chr8g0355781 68.421 152 47 1 1 151 1 152 9.96e-76 222
Msa1238170 MtrunA17_Chr8g0355641 66.026 156 52 1 1 155 1 156 1.15e-75 222
Msa1238170 MtrunA17_Chr1g0160371 45.098 153 80 3 1 150 1 152 2.97e-40 132
Msa1238170 MtrunA17_Chr1g0160381 39.869 153 88 3 1 150 5 156 2.05e-37 125
Msa1238170 MtrunA17_Chr1g0160391 40.385 156 84 5 1 148 1 155 1.34e-30 108
Msa1238170 MtrunA17_Chr8g0339261 33.333 150 96 4 6 153 8 155 1.28e-25 95.5
Msa1238170 MtrunA17_Chr1g0160801 39.189 148 80 6 7 151 7 147 2.21e-23 89.7
Msa1238170 MtrunA17_Chr1g0160351 41.935 93 51 2 61 150 1 93 6.07e-20 79.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1238170 AT1G70840.1 35.948 153 94 4 3 152 20 171 7.22e-26 97.1
Msa1238170 AT1G70830.5 37.255 153 92 4 3 152 22 173 1.63e-25 96.3
Msa1238170 AT5G28010.1 35.294 153 95 4 3 152 15 166 2.27e-25 95.5
Msa1238170 AT5G28010.2 35.294 153 95 4 3 152 15 166 2.27e-25 95.5
Msa1238170 AT1G70830.3 37.013 154 93 4 3 153 22 174 2.37e-25 96.7
Msa1238170 AT1G70890.1 36.601 153 93 4 3 152 7 158 5.79e-25 94.4
Msa1238170 AT1G70830.2 37.013 154 93 4 3 153 22 174 1.85e-24 95.1
Msa1238170 AT1G70830.1 37.013 154 93 4 3 153 22 174 3.23e-24 96.3
Msa1238170 AT1G70830.1 35.948 153 94 4 3 152 184 335 1.06e-22 92.0
Msa1238170 AT1G70830.4 35.948 153 94 4 3 152 137 288 3.03e-23 92.8
Msa1238170 AT1G70830.4 32.990 97 63 2 59 153 31 127 4.96e-11 59.7
Msa1238170 AT5G28000.1 32.680 153 99 4 3 152 13 164 3.31e-22 87.4
Msa1238170 AT4G23670.1 35.294 153 95 4 1 151 1 151 6.45e-22 86.3
Msa1238170 AT1G70850.2 34.667 150 94 4 3 149 9 157 8.85e-22 88.2
Msa1238170 AT1G70850.3 34.667 150 94 4 3 149 9 157 2.13e-21 88.6
Msa1238170 AT1G70850.3 36.364 143 87 4 13 152 175 316 3.28e-21 87.8
Msa1238170 AT1G70850.1 34.667 150 94 4 3 149 9 157 2.13e-21 88.6
Msa1238170 AT1G70850.1 36.364 143 87 4 13 152 175 316 3.28e-21 87.8
Msa1238170 AT1G14930.1 31.210 157 104 4 1 155 1 155 2.37e-21 84.7
Msa1238170 AT2G01520.1 31.373 153 101 4 1 151 1 151 9.67e-21 83.2
Msa1238170 AT2G01530.1 32.680 153 99 4 1 151 1 151 9.50e-20 80.5
Msa1238170 AT1G14940.1 29.299 157 107 4 1 155 1 155 9.57e-19 78.2
Msa1238170 AT1G70870.1 35.484 155 78 5 1 150 1 138 3.12e-18 76.3
Msa1238170 AT1G14950.1 30.573 157 105 4 1 155 1 155 6.83e-18 75.9
Msa1238170 AT4G14060.1 30.065 153 103 4 1 151 1 151 7.55e-18 75.9
Msa1238170 AT1G23130.1 28.859 149 103 3 3 149 10 157 8.87e-18 75.9
Msa1238170 AT4G23680.1 30.263 152 102 4 1 150 1 150 3.51e-17 73.9
Msa1238170 AT1G70880.1 29.412 153 104 4 3 152 8 159 3.58e-17 74.3
Msa1238170 AT1G35260.1 30.556 144 95 4 9 149 8 149 4.58e-17 73.6
Msa1238170 AT1G23120.1 28.000 150 100 5 3 149 1 145 8.80e-16 70.5
Msa1238170 AT1G30990.1 29.801 151 101 5 1 149 1 148 9.41e-16 70.5
Msa1238170 AT1G23120.2 26.950 141 97 4 10 149 60 195 2.39e-15 70.1
Msa1238170 AT1G14960.1 29.032 155 106 4 1 153 1 153 4.67e-15 68.6
Msa1238170 AT1G24020.1 31.613 155 97 4 1 150 1 151 2.01e-14 67.0
Msa1238170 AT1G24020.2 31.613 155 97 4 1 150 1 151 2.01e-14 67.0
Msa1238170 AT1G35310.1 28.777 139 95 4 13 149 12 148 9.53e-14 65.1
Msa1238170 AT3G26460.1 26.797 153 109 3 1 151 1 152 9.73e-14 65.1
Msa1238170 AT3G26450.1 25.325 154 110 5 1 151 1 152 7.12e-12 60.1
Msa1238170 AT1G14940.2 26.115 157 96 4 1 155 1 139 9.94e-12 59.3

Find 40 sgRNAs with CRISPR-Local

Find 204 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAATTCTTCTTCAAAATAAT+TGG 0.142347 8_2:+18082932 Msa1238170:three_prime_UTR
AAGATACTAAATAATAAATA+AGG 0.212177 8_2:-18080800 None:intergenic
AAAATCACTTACAAGCTATT+TGG 0.220413 8_2:+18082482 Msa1238170:CDS
TCATAAAGATATTTGAATTA+TGG 0.240516 8_2:+18082711 Msa1238170:three_prime_UTR
GTCTTTAAGCTCATCTTAGA+AGG 0.291250 8_2:+18082527 Msa1238170:CDS
ATCTTCACCTTCATGAAGTT+TGG 0.299460 8_2:-18080951 None:intergenic
AATTGTGTGATGCAAATAAA+TGG 0.318220 8_2:+18082868 Msa1238170:three_prime_UTR
AACATTAATGAAAGAGTTCA+TGG 0.350725 8_2:+18080926 Msa1238170:CDS
TATTTGAATTATGGTTCAAT+GGG 0.403324 8_2:+18082720 Msa1238170:three_prime_UTR
ATGGAAGTTCTGCTGTTAGA+TGG 0.407851 8_2:+18082564 Msa1238170:CDS
GGTAAACTTATTACTGAACT+TGG 0.415223 8_2:+18080842 Msa1238170:CDS
CTAGTGTGATGTTTGTGTTT+TGG 0.419947 8_2:+18082788 Msa1238170:three_prime_UTR
GAATTATGGTTCAATGGGGT+TGG 0.420941 8_2:+18082725 Msa1238170:three_prime_UTR
TGGAGATCTTGAAAACTATA+AGG 0.428906 8_2:+18082505 Msa1238170:CDS
ATATTTGAATTATGGTTCAA+TGG 0.435694 8_2:+18082719 Msa1238170:three_prime_UTR
AGGAAATCCATCCATCCATT+TGG 0.440781 8_2:-18082626 None:intergenic
AAACACTGGACTTATGTCAT+AGG 0.470664 8_2:+18080995 Msa1238170:CDS
ATCACTTACAAGCTATTTGG+TGG 0.474679 8_2:+18082485 Msa1238170:CDS
AAAAGCACTAGAGATATTGA+TGG 0.477335 8_2:+18082653 Msa1238170:CDS
AGATACTAAATAATAAATAA+GGG 0.482862 8_2:-18080799 None:intergenic
AACTTCATGAAGGTGAAGAT+TGG 0.494334 8_2:+18080954 Msa1238170:CDS
TCATCTTGTCAAAGGGGAAA+AGG 0.504175 8_2:+18082676 Msa1238170:CDS
AGATTGGCATCATACTGATT+CGG 0.504369 8_2:+18080970 Msa1238170:CDS
TTGATGGTCATCTTGTCAAA+GGG 0.506740 8_2:+18082669 Msa1238170:CDS
GAGGATATCGATACTCCAAA+TGG 0.515854 8_2:+18082611 Msa1238170:CDS
CGATACTCCAAATGGATGGA+TGG 0.534738 8_2:+18082619 Msa1238170:CDS
GTAAACTTATTACTGAACTT+GGG 0.542207 8_2:+18080843 Msa1238170:CDS
ATTGATGGTCATCTTGTCAA+AGG 0.543582 8_2:+18082668 Msa1238170:CDS
TCTTTAAGCTCATCTTAGAA+GGG 0.545692 8_2:+18082528 Msa1238170:CDS
AGTTTGTAGAACTTGTCAGC+TGG 0.569465 8_2:-18080875 None:intergenic
GAAGGGCTTAACAAGGCTGA+TGG 0.584478 8_2:+18082545 Msa1238170:CDS
TTTGTATCGAATATATGTGT+CGG 0.588014 8_2:+18082821 Msa1238170:three_prime_UTR
ATATCGATACTCCAAATGGA+TGG 0.593139 8_2:+18082615 Msa1238170:CDS
ATACTGATTCGGTTAAACAC+TGG 0.606046 8_2:+18080981 Msa1238170:CDS
CATCTTAGAAGGGCTTAACA+AGG 0.611102 8_2:+18082538 Msa1238170:CDS
CATGGTGCCAAACTTCATGA+AGG 0.632424 8_2:+18080944 Msa1238170:CDS
ATTTGAATTATGGTTCAATG+GGG 0.632915 8_2:+18082721 Msa1238170:three_prime_UTR
TGATGGTCATCTTGTCAAAG+GGG 0.652198 8_2:+18082670 Msa1238170:CDS
TGACGTAATAACAGATGGCG+AGG 0.668621 8_2:+18082412 Msa1238170:intron
TGATTATGAGAAGAACAATG+AGG 0.681814 8_2:+18082592 Msa1238170:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTTAATTATCAAAAAAATAA+TGG - chr8_2:18081392-18081411 None:intergenic 10.0%
!! ATATATATTATTCGAAAAAA+AGG + chr8_2:18081436-18081455 Msa1238170:intron 10.0%
!!! ATTTTTAAAAAAATGTGAAA+GGG + chr8_2:18082042-18082061 Msa1238170:intron 10.0%
!!! TATCTTATTATAATATTTTC+TGG + chr8_2:18082320-18082339 Msa1238170:intron 10.0%
!! CTTAATTATCAAAAAAATAA+TGG - chr8_2:18081392-18081411 None:intergenic 10.0%
!! ATATATATTATTCGAAAAAA+AGG + chr8_2:18081436-18081455 Msa1238170:intron 10.0%
!!! ATTTTTAAAAAAATGTGAAA+GGG + chr8_2:18082042-18082061 Msa1238170:intron 10.0%
!!! TATCTTATTATAATATTTTC+TGG + chr8_2:18082320-18082339 Msa1238170:intron 10.0%
!!! GTTTTCTATTACAAATTTTT+TGG + chr8_2:18081078-18081097 Msa1238170:intron 15.0%
!! TATAGTAATAAAAAGAAGAT+TGG + chr8_2:18081109-18081128 Msa1238170:intron 15.0%
!! AAATTCTAAATTATGTCAAT+AGG - chr8_2:18081223-18081242 None:intergenic 15.0%
!! GAATAATATATATTATGAGT+GGG - chr8_2:18081429-18081448 None:intergenic 15.0%
!! TAAATTTACTATGAAATAGT+AGG + chr8_2:18081716-18081735 Msa1238170:intron 15.0%
!! AAATTTACTATGAAATAGTA+GGG + chr8_2:18081717-18081736 Msa1238170:intron 15.0%
!!! GGATTTATATTTTGTTTTTT+AGG + chr8_2:18081957-18081976 Msa1238170:intron 15.0%
!!! CATTTTTAAAAAAATGTGAA+AGG + chr8_2:18082041-18082060 Msa1238170:intron 15.0%
!!! ATCTTTAAATAGTATTTTAG+AGG + chr8_2:18082134-18082153 Msa1238170:intron 15.0%
!! TCATAAAGATATTTGAATTA+TGG + chr8_2:18082711-18082730 Msa1238170:three_prime_UTR 15.0%
!!! GTTTTCTATTACAAATTTTT+TGG + chr8_2:18081078-18081097 Msa1238170:intron 15.0%
!! TATAGTAATAAAAAGAAGAT+TGG + chr8_2:18081109-18081128 Msa1238170:intron 15.0%
!! AAATTCTAAATTATGTCAAT+AGG - chr8_2:18081223-18081242 None:intergenic 15.0%
!! GAATAATATATATTATGAGT+GGG - chr8_2:18081429-18081448 None:intergenic 15.0%
!! TAAATTTACTATGAAATAGT+AGG + chr8_2:18081716-18081735 Msa1238170:intron 15.0%
!! AAATTTACTATGAAATAGTA+GGG + chr8_2:18081717-18081736 Msa1238170:intron 15.0%
!!! GGATTTATATTTTGTTTTTT+AGG + chr8_2:18081957-18081976 Msa1238170:intron 15.0%
!!! CATTTTTAAAAAAATGTGAA+AGG + chr8_2:18082041-18082060 Msa1238170:intron 15.0%
!!! ATCTTTAAATAGTATTTTAG+AGG + chr8_2:18082134-18082153 Msa1238170:intron 15.0%
!! TCATAAAGATATTTGAATTA+TGG + chr8_2:18082711-18082730 Msa1238170:three_prime_UTR 15.0%
!! ATTTAGTATCTTTCCAAAAA+TGG + chr8_2:18080811-18080830 Msa1238170:exon 20.0%
!! CGAATAATATATATTATGAG+TGG - chr8_2:18081430-18081449 None:intergenic 20.0%
!!! GTATAATTTTTTCTTTACGA+TGG + chr8_2:18081542-18081561 Msa1238170:intron 20.0%
!!! CCTTAAAGTTTTTAGTAAAA+CGG + chr8_2:18081648-18081667 Msa1238170:intron 20.0%
!!! TATGTATTTGATTTATGCTT+AGG + chr8_2:18081747-18081766 Msa1238170:intron 20.0%
!!! TTTTGTTTTTTAGGATACAA+AGG + chr8_2:18081966-18081985 Msa1238170:intron 20.0%
!!! CAATAAAATACGTTTTTCAA+AGG - chr8_2:18082372-18082391 None:intergenic 20.0%
!! ATATTTGAATTATGGTTCAA+TGG + chr8_2:18082719-18082738 Msa1238170:three_prime_UTR 20.0%
!! TATTTGAATTATGGTTCAAT+GGG + chr8_2:18082720-18082739 Msa1238170:three_prime_UTR 20.0%
!! CAATTCTTCTTCAAAATAAT+TGG + chr8_2:18082932-18082951 Msa1238170:three_prime_UTR 20.0%
!! ATTTAGTATCTTTCCAAAAA+TGG + chr8_2:18080811-18080830 Msa1238170:exon 20.0%
!! CGAATAATATATATTATGAG+TGG - chr8_2:18081430-18081449 None:intergenic 20.0%
!!! GTATAATTTTTTCTTTACGA+TGG + chr8_2:18081542-18081561 Msa1238170:intron 20.0%
!!! CCTTAAAGTTTTTAGTAAAA+CGG + chr8_2:18081648-18081667 Msa1238170:intron 20.0%
!!! TATGTATTTGATTTATGCTT+AGG + chr8_2:18081747-18081766 Msa1238170:intron 20.0%
!!! TTTTGTTTTTTAGGATACAA+AGG + chr8_2:18081966-18081985 Msa1238170:intron 20.0%
!!! CAATAAAATACGTTTTTCAA+AGG - chr8_2:18082372-18082391 None:intergenic 20.0%
!! ATATTTGAATTATGGTTCAA+TGG + chr8_2:18082719-18082738 Msa1238170:three_prime_UTR 20.0%
!! TATTTGAATTATGGTTCAAT+GGG + chr8_2:18082720-18082739 Msa1238170:three_prime_UTR 20.0%
!! CAATTCTTCTTCAAAATAAT+TGG + chr8_2:18082932-18082951 Msa1238170:three_prime_UTR 20.0%
! GTAAACTTATTACTGAACTT+GGG + chr8_2:18080843-18080862 Msa1238170:CDS 25.0%
! AACATTAATGAAAGAGTTCA+TGG + chr8_2:18080926-18080945 Msa1238170:CDS 25.0%
! AGTATCATTTGTTTCCTTTA+AGG - chr8_2:18081494-18081513 None:intergenic 25.0%
! TTATCTCTAGACAAAAAATC+TGG - chr8_2:18081579-18081598 None:intergenic 25.0%
! TTTGTCTAGAGATAAAAAGT+AGG + chr8_2:18081584-18081603 Msa1238170:intron 25.0%
! TTGTCTAGAGATAAAAAGTA+GGG + chr8_2:18081585-18081604 Msa1238170:intron 25.0%
! GTTTGTATAATATGATCCTT+CGG + chr8_2:18081607-18081626 Msa1238170:intron 25.0%
!! CCGTTTTACTAAAAACTTTA+AGG - chr8_2:18081651-18081670 None:intergenic 25.0%
!! TCATTTTACAACAGTAATGT+GGG + chr8_2:18081936-18081955 Msa1238170:intron 25.0%
!!! GTGCTTTATTTAAAGATCTA+AGG - chr8_2:18082079-18082098 None:intergenic 25.0%
! AACAATGCATAATATATGCA+AGG + chr8_2:18082198-18082217 Msa1238170:intron 25.0%
! AAAATCACTTACAAGCTATT+TGG + chr8_2:18082482-18082501 Msa1238170:CDS 25.0%
! ATTTGAATTATGGTTCAATG+GGG + chr8_2:18082721-18082740 Msa1238170:three_prime_UTR 25.0%
! TTTGTATCGAATATATGTGT+CGG + chr8_2:18082821-18082840 Msa1238170:three_prime_UTR 25.0%
! AATTGTGTGATGCAAATAAA+TGG + chr8_2:18082868-18082887 Msa1238170:three_prime_UTR 25.0%
! GTAAACTTATTACTGAACTT+GGG + chr8_2:18080843-18080862 Msa1238170:CDS 25.0%
! AACATTAATGAAAGAGTTCA+TGG + chr8_2:18080926-18080945 Msa1238170:CDS 25.0%
! AGTATCATTTGTTTCCTTTA+AGG - chr8_2:18081494-18081513 None:intergenic 25.0%
! TTATCTCTAGACAAAAAATC+TGG - chr8_2:18081579-18081598 None:intergenic 25.0%
! TTTGTCTAGAGATAAAAAGT+AGG + chr8_2:18081584-18081603 Msa1238170:intron 25.0%
! TTGTCTAGAGATAAAAAGTA+GGG + chr8_2:18081585-18081604 Msa1238170:intron 25.0%
! GTTTGTATAATATGATCCTT+CGG + chr8_2:18081607-18081626 Msa1238170:intron 25.0%
!! CCGTTTTACTAAAAACTTTA+AGG - chr8_2:18081651-18081670 None:intergenic 25.0%
!! TCATTTTACAACAGTAATGT+GGG + chr8_2:18081936-18081955 Msa1238170:intron 25.0%
!!! GTGCTTTATTTAAAGATCTA+AGG - chr8_2:18082079-18082098 None:intergenic 25.0%
! AACAATGCATAATATATGCA+AGG + chr8_2:18082198-18082217 Msa1238170:intron 25.0%
! AAAATCACTTACAAGCTATT+TGG + chr8_2:18082482-18082501 Msa1238170:CDS 25.0%
! ATTTGAATTATGGTTCAATG+GGG + chr8_2:18082721-18082740 Msa1238170:three_prime_UTR 25.0%
! TTTGTATCGAATATATGTGT+CGG + chr8_2:18082821-18082840 Msa1238170:three_prime_UTR 25.0%
! AATTGTGTGATGCAAATAAA+TGG + chr8_2:18082868-18082887 Msa1238170:three_prime_UTR 25.0%
GGTAAACTTATTACTGAACT+TGG + chr8_2:18080842-18080861 Msa1238170:CDS 30.0%
TCTTCGTTATAGATCTCATT+TGG - chr8_2:18081149-18081168 None:intergenic 30.0%
TATTGCCTTCATTGTTAGAT+CGG - chr8_2:18081194-18081213 None:intergenic 30.0%
AAAGCAACAAATGACCTTAA+AGG + chr8_2:18081477-18081496 Msa1238170:intron 30.0%
AAATGATACTCAACCATCTT+TGG + chr8_2:18081504-18081523 Msa1238170:intron 30.0%
! TGCCATGATTTGTAATTTCA+TGG + chr8_2:18081818-18081837 Msa1238170:intron 30.0%
AGCCATGAAATTACAAATCA+TGG - chr8_2:18081823-18081842 None:intergenic 30.0%
TAATTTCATGGCTCTTTCTT+GGG + chr8_2:18081830-18081849 Msa1238170:intron 30.0%
!! GTCATTTTACAACAGTAATG+TGG + chr8_2:18081935-18081954 Msa1238170:intron 30.0%
TGGAGATCTTGAAAACTATA+AGG + chr8_2:18082505-18082524 Msa1238170:CDS 30.0%
TCTTTAAGCTCATCTTAGAA+GGG + chr8_2:18082528-18082547 Msa1238170:CDS 30.0%
TGATTATGAGAAGAACAATG+AGG + chr8_2:18082592-18082611 Msa1238170:CDS 30.0%
!! AAAAGCACTAGAGATATTGA+TGG + chr8_2:18082653-18082672 Msa1238170:CDS 30.0%
GGTAAACTTATTACTGAACT+TGG + chr8_2:18080842-18080861 Msa1238170:CDS 30.0%
TCTTCGTTATAGATCTCATT+TGG - chr8_2:18081149-18081168 None:intergenic 30.0%
TATTGCCTTCATTGTTAGAT+CGG - chr8_2:18081194-18081213 None:intergenic 30.0%
AAAGCAACAAATGACCTTAA+AGG + chr8_2:18081477-18081496 Msa1238170:intron 30.0%
AAATGATACTCAACCATCTT+TGG + chr8_2:18081504-18081523 Msa1238170:intron 30.0%
! TGCCATGATTTGTAATTTCA+TGG + chr8_2:18081818-18081837 Msa1238170:intron 30.0%
AGCCATGAAATTACAAATCA+TGG - chr8_2:18081823-18081842 None:intergenic 30.0%
TAATTTCATGGCTCTTTCTT+GGG + chr8_2:18081830-18081849 Msa1238170:intron 30.0%
!! GTCATTTTACAACAGTAATG+TGG + chr8_2:18081935-18081954 Msa1238170:intron 30.0%
TGGAGATCTTGAAAACTATA+AGG + chr8_2:18082505-18082524 Msa1238170:CDS 30.0%
TCTTTAAGCTCATCTTAGAA+GGG + chr8_2:18082528-18082547 Msa1238170:CDS 30.0%
TGATTATGAGAAGAACAATG+AGG + chr8_2:18082592-18082611 Msa1238170:CDS 30.0%
!! AAAAGCACTAGAGATATTGA+TGG + chr8_2:18082653-18082672 Msa1238170:CDS 30.0%
ATCTTCACCTTCATGAAGTT+TGG - chr8_2:18080954-18080973 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG + chr8_2:18080954-18080973 Msa1238170:CDS 35.0%
! AGATTGGCATCATACTGATT+CGG + chr8_2:18080970-18080989 Msa1238170:CDS 35.0%
!! ATACTGATTCGGTTAAACAC+TGG + chr8_2:18080981-18081000 Msa1238170:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG + chr8_2:18080995-18081014 Msa1238170:CDS 35.0%
TGATTTATGCTTAGGTGTTC+AGG + chr8_2:18081755-18081774 Msa1238170:intron 35.0%
GTAATTTCATGGCTCTTTCT+TGG + chr8_2:18081829-18081848 Msa1238170:intron 35.0%
GCATAATATATGCAAGGTTC+AGG + chr8_2:18082204-18082223 Msa1238170:intron 35.0%
!!! GAATGCCTCTTTCTTTTTTG+TGG - chr8_2:18082245-18082264 None:intergenic 35.0%
ATCACTTACAAGCTATTTGG+TGG + chr8_2:18082485-18082504 Msa1238170:CDS 35.0%
GTCTTTAAGCTCATCTTAGA+AGG + chr8_2:18082527-18082546 Msa1238170:CDS 35.0%
ATATCGATACTCCAAATGGA+TGG + chr8_2:18082615-18082634 Msa1238170:CDS 35.0%
! TATCTCTAGTGCTTTTGCTA+AGG - chr8_2:18082649-18082668 None:intergenic 35.0%
! ATTGATGGTCATCTTGTCAA+AGG + chr8_2:18082668-18082687 Msa1238170:CDS 35.0%
! TTGATGGTCATCTTGTCAAA+GGG + chr8_2:18082669-18082688 Msa1238170:CDS 35.0%
! CTAGTGTGATGTTTGTGTTT+TGG + chr8_2:18082788-18082807 Msa1238170:three_prime_UTR 35.0%
ATCTTCACCTTCATGAAGTT+TGG - chr8_2:18080954-18080973 None:intergenic 35.0%
AACTTCATGAAGGTGAAGAT+TGG + chr8_2:18080954-18080973 Msa1238170:CDS 35.0%
! AGATTGGCATCATACTGATT+CGG + chr8_2:18080970-18080989 Msa1238170:CDS 35.0%
!! ATACTGATTCGGTTAAACAC+TGG + chr8_2:18080981-18081000 Msa1238170:CDS 35.0%
AAACACTGGACTTATGTCAT+AGG + chr8_2:18080995-18081014 Msa1238170:CDS 35.0%
TGATTTATGCTTAGGTGTTC+AGG + chr8_2:18081755-18081774 Msa1238170:intron 35.0%
GTAATTTCATGGCTCTTTCT+TGG + chr8_2:18081829-18081848 Msa1238170:intron 35.0%
GCATAATATATGCAAGGTTC+AGG + chr8_2:18082204-18082223 Msa1238170:intron 35.0%
!!! GAATGCCTCTTTCTTTTTTG+TGG - chr8_2:18082245-18082264 None:intergenic 35.0%
ATCACTTACAAGCTATTTGG+TGG + chr8_2:18082485-18082504 Msa1238170:CDS 35.0%
GTCTTTAAGCTCATCTTAGA+AGG + chr8_2:18082527-18082546 Msa1238170:CDS 35.0%
ATATCGATACTCCAAATGGA+TGG + chr8_2:18082615-18082634 Msa1238170:CDS 35.0%
! TATCTCTAGTGCTTTTGCTA+AGG - chr8_2:18082649-18082668 None:intergenic 35.0%
! ATTGATGGTCATCTTGTCAA+AGG + chr8_2:18082668-18082687 Msa1238170:CDS 35.0%
! TTGATGGTCATCTTGTCAAA+GGG + chr8_2:18082669-18082688 Msa1238170:CDS 35.0%
! CTAGTGTGATGTTTGTGTTT+TGG + chr8_2:18082788-18082807 Msa1238170:three_prime_UTR 35.0%
TTTCCAAAAATGGTGCTTGC+TGG + chr8_2:18080821-18080840 Msa1238170:exon 40.0%
! TTACCAGCAAGCACCATTTT+TGG - chr8_2:18080827-18080846 None:intergenic 40.0%
AGTTTGTAGAACTTGTCAGC+TGG - chr8_2:18080878-18080897 None:intergenic 40.0%
TATCGAAATCATTGCACACG+AGG + chr8_2:18081327-18081346 Msa1238170:intron 40.0%
! CGTCTTTAGACATTTTCCGA+AGG - chr8_2:18081626-18081645 None:intergenic 40.0%
!!! TCTTTCTTTTTTGTGGTGGC+CGG - chr8_2:18082238-18082257 None:intergenic 40.0%
!!! TGCCTCTTTCTTTTTTGTGG+TGG - chr8_2:18082242-18082261 None:intergenic 40.0%
CATCTTAGAAGGGCTTAACA+AGG + chr8_2:18082538-18082557 Msa1238170:CDS 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG + chr8_2:18082564-18082583 Msa1238170:CDS 40.0%
GAGGATATCGATACTCCAAA+TGG + chr8_2:18082611-18082630 Msa1238170:CDS 40.0%
AGGAAATCCATCCATCCATT+TGG - chr8_2:18082629-18082648 None:intergenic 40.0%
TGATGGTCATCTTGTCAAAG+GGG + chr8_2:18082670-18082689 Msa1238170:CDS 40.0%
TCATCTTGTCAAAGGGGAAA+AGG + chr8_2:18082676-18082695 Msa1238170:CDS 40.0%
GAATTATGGTTCAATGGGGT+TGG + chr8_2:18082725-18082744 Msa1238170:three_prime_UTR 40.0%
!!! TTCAATGGGGTTGGCTTTTA+TGG + chr8_2:18082734-18082753 Msa1238170:three_prime_UTR 40.0%
TTTCCAAAAATGGTGCTTGC+TGG + chr8_2:18080821-18080840 Msa1238170:exon 40.0%
! TTACCAGCAAGCACCATTTT+TGG - chr8_2:18080827-18080846 None:intergenic 40.0%
AGTTTGTAGAACTTGTCAGC+TGG - chr8_2:18080878-18080897 None:intergenic 40.0%
TATCGAAATCATTGCACACG+AGG + chr8_2:18081327-18081346 Msa1238170:intron 40.0%
! CGTCTTTAGACATTTTCCGA+AGG - chr8_2:18081626-18081645 None:intergenic 40.0%
!!! TCTTTCTTTTTTGTGGTGGC+CGG - chr8_2:18082238-18082257 None:intergenic 40.0%
!!! TGCCTCTTTCTTTTTTGTGG+TGG - chr8_2:18082242-18082261 None:intergenic 40.0%
CATCTTAGAAGGGCTTAACA+AGG + chr8_2:18082538-18082557 Msa1238170:CDS 40.0%
ATGGAAGTTCTGCTGTTAGA+TGG + chr8_2:18082564-18082583 Msa1238170:CDS 40.0%
GAGGATATCGATACTCCAAA+TGG + chr8_2:18082611-18082630 Msa1238170:CDS 40.0%
AGGAAATCCATCCATCCATT+TGG - chr8_2:18082629-18082648 None:intergenic 40.0%
TGATGGTCATCTTGTCAAAG+GGG + chr8_2:18082670-18082689 Msa1238170:CDS 40.0%
TCATCTTGTCAAAGGGGAAA+AGG + chr8_2:18082676-18082695 Msa1238170:CDS 40.0%
GAATTATGGTTCAATGGGGT+TGG + chr8_2:18082725-18082744 Msa1238170:three_prime_UTR 40.0%
!!! TTCAATGGGGTTGGCTTTTA+TGG + chr8_2:18082734-18082753 Msa1238170:three_prime_UTR 40.0%
! CATGGTGCCAAACTTCATGA+AGG + chr8_2:18080944-18080963 Msa1238170:CDS 45.0%
CGAGACCGATCTAACAATGA+AGG + chr8_2:18081186-18081205 Msa1238170:intron 45.0%
CAACCATCTTTGGATTCACG+TGG + chr8_2:18081514-18081533 Msa1238170:intron 45.0%
GTACCACGTGAATCCAAAGA+TGG - chr8_2:18081520-18081539 None:intergenic 45.0%
TCTTGGGTGCAATGTATGCT+TGG + chr8_2:18081846-18081865 Msa1238170:intron 45.0%
CTTGGGTGCAATGTATGCTT+GGG + chr8_2:18081847-18081866 Msa1238170:intron 45.0%
! CAAGGTTCAGGTTCAAATCC+CGG + chr8_2:18082216-18082235 Msa1238170:intron 45.0%
!!! CTTTCTTTTTTGTGGTGGCC+GGG - chr8_2:18082237-18082256 None:intergenic 45.0%
GGCCACCACAAAAAAGAAAG+AGG + chr8_2:18082237-18082256 Msa1238170:intron 45.0%
GCCTCTGACGTAATAACAGA+TGG + chr8_2:18082407-18082426 Msa1238170:intron 45.0%
GCCATCTGTTATTACGTCAG+AGG - chr8_2:18082411-18082430 None:intergenic 45.0%
TGACGTAATAACAGATGGCG+AGG + chr8_2:18082412-18082431 Msa1238170:intron 45.0%
CGATACTCCAAATGGATGGA+TGG + chr8_2:18082619-18082638 Msa1238170:CDS 45.0%
! CATGGTGCCAAACTTCATGA+AGG + chr8_2:18080944-18080963 Msa1238170:CDS 45.0%
CGAGACCGATCTAACAATGA+AGG + chr8_2:18081186-18081205 Msa1238170:intron 45.0%
CAACCATCTTTGGATTCACG+TGG + chr8_2:18081514-18081533 Msa1238170:intron 45.0%
GTACCACGTGAATCCAAAGA+TGG - chr8_2:18081520-18081539 None:intergenic 45.0%
TCTTGGGTGCAATGTATGCT+TGG + chr8_2:18081846-18081865 Msa1238170:intron 45.0%
CTTGGGTGCAATGTATGCTT+GGG + chr8_2:18081847-18081866 Msa1238170:intron 45.0%
! CAAGGTTCAGGTTCAAATCC+CGG + chr8_2:18082216-18082235 Msa1238170:intron 45.0%
!!! CTTTCTTTTTTGTGGTGGCC+GGG - chr8_2:18082237-18082256 None:intergenic 45.0%
GGCCACCACAAAAAAGAAAG+AGG + chr8_2:18082237-18082256 Msa1238170:intron 45.0%
GCCTCTGACGTAATAACAGA+TGG + chr8_2:18082407-18082426 Msa1238170:intron 45.0%
GCCATCTGTTATTACGTCAG+AGG - chr8_2:18082411-18082430 None:intergenic 45.0%
TGACGTAATAACAGATGGCG+AGG + chr8_2:18082412-18082431 Msa1238170:intron 45.0%
CGATACTCCAAATGGATGGA+TGG + chr8_2:18082619-18082638 Msa1238170:CDS 45.0%
!!! TAATTTAGAATTTTTTTAAT+TGG + chr8_2:18081230-18081249 Msa1238170:intron 5.0%
!!! CTATTATTATTTTATTTTTT+TGG - chr8_2:18081904-18081923 None:intergenic 5.0%
!!! TATTATATATTTTTTTAATG+CGG + chr8_2:18082276-18082295 Msa1238170:intron 5.0%
!! TTATAATAAGATAATAATAA+AGG - chr8_2:18082313-18082332 None:intergenic 5.0%
!!! TAATTTAGAATTTTTTTAAT+TGG + chr8_2:18081230-18081249 Msa1238170:intron 5.0%
!!! CTATTATTATTTTATTTTTT+TGG - chr8_2:18081904-18081923 None:intergenic 5.0%
!!! TATTATATATTTTTTTAATG+CGG + chr8_2:18082276-18082295 Msa1238170:intron 5.0%
!! TTATAATAAGATAATAATAA+AGG - chr8_2:18082313-18082332 None:intergenic 5.0%
CTTCGTGTGCTTAGCTCAGT+TGG + chr8_2:18082171-18082190 Msa1238170:intron 50.0%
GAAGGGCTTAACAAGGCTGA+TGG + chr8_2:18082545-18082564 Msa1238170:CDS 50.0%
CTTCGTGTGCTTAGCTCAGT+TGG + chr8_2:18082171-18082190 Msa1238170:intron 50.0%
GAAGGGCTTAACAAGGCTGA+TGG + chr8_2:18082545-18082564 Msa1238170:CDS 50.0%
Chromosome Type Strat End Strand Name
chr8_2 gene 18080801 18082995 18080801 ID=Msa1238170;Name=Msa1238170
chr8_2 mRNA 18080801 18082995 18080801 ID=Msa1238170-mRNA-1;Parent=Msa1238170;Name=Msa1238170-mRNA-1;_AED=0.07;_eAED=0.07;_QI=29|1|1|1|1|1|2|286|156
chr8_2 exon 18080801 18081016 18080801 ID=Msa1238170-mRNA-1:exon:6832;Parent=Msa1238170-mRNA-1
chr8_2 exon 18082426 18082995 18082426 ID=Msa1238170-mRNA-1:exon:6833;Parent=Msa1238170-mRNA-1
chr8_2 five_prime_UTR 18080801 18080829 18080801 ID=Msa1238170-mRNA-1:five_prime_utr;Parent=Msa1238170-mRNA-1
chr8_2 CDS 18080830 18081016 18080830 ID=Msa1238170-mRNA-1:cds;Parent=Msa1238170-mRNA-1
chr8_2 CDS 18082426 18082709 18082426 ID=Msa1238170-mRNA-1:cds;Parent=Msa1238170-mRNA-1
chr8_2 three_prime_UTR 18082710 18082995 18082710 ID=Msa1238170-mRNA-1:three_prime_utr;Parent=Msa1238170-mRNA-1
Gene Sequence

>Msa1238170

ATGGTGCTTGCTGGTAAACTTATTACTGAACTTGGGATCAAAACACCAGCTGACAAGTTCTACAAACTATTTGCATCAGAACTTCACGAAGTGCAAAACATTAATGAAAGAGTTCATGGTGCCAAACTTCATGAAGGTGAAGATTGGCATCATACTGATTCGGTTAAACACTGGACTTATGTCATAGATGGCGAGGTACACACATGCAATGAGAGTGTTGAAGAAGTTGATGATCAGAACAAAAAAATCACTTACAAGCTATTTGGTGGAGATCTTGAAAACTATAAGGTCTTTAAGCTCATCTTAGAAGGGCTTAACAAGGCTGATGGAAGTTCTGCTGTTAGATGGACTATTGATTATGAGAAGAACAATGAGGATATCGATACTCCAAATGGATGGATGGATTTCCTTAGCAAAAGCACTAGAGATATTGATGGTCATCTTGTCAAAGGGGAAAAGGTAGCTCTATAA

Protein sequence

>Msa1238170

MVLAGKLITELGIKTPADKFYKLFASELHEVQNINERVHGAKLHEGEDWHHTDSVKHWTYVIDGEVHTCNESVEEVDDQNKKITYKLFGGDLENYKVFKLILEGLNKADGSSAVRWTIDYEKNNEDIDTPNGWMDFLSKSTRDIDGHLVKGEKVAL*