Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428900 | AET00746.2 | 98.442 | 321 | 5 | 0 | 1 | 321 | 1 | 321 | 0.0 | 649 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428900 | sp|Q39218|SAT3_ARATH | 64.308 | 325 | 104 | 3 | 5 | 321 | 71 | 391 | 5.61e-146 | 419 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428900 | G7K4N0 | 98.442 | 321 | 5 | 0 | 1 | 321 | 1 | 321 | 0.0 | 649 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0060670 | Msa1428900 | 0.800985 | 1.114371e-48 | -8.615850e-47 |
| Msa0105410 | Msa1428900 | 0.820849 | 5.517699e-53 | -8.615850e-47 |
| Msa1418240 | Msa1428900 | 0.804546 | 2.050877e-49 | -8.615850e-47 |
| Msa0646240 | Msa1428900 | 0.810747 | 9.885222e-51 | -8.615850e-47 |
| Msa0712260 | Msa1428900 | 0.816854 | 4.462605e-52 | -8.615850e-47 |
| Msa0748150 | Msa1428900 | 0.974860 | 6.621660e-139 | -8.615850e-47 |
| Msa0752600 | Msa1428900 | 0.875994 | 1.986203e-68 | -8.615850e-47 |
| Msa0828240 | Msa1428900 | 0.825229 | 5.252984e-54 | -8.615850e-47 |
| Msa0190930 | Msa1428900 | 0.800052 | 1.726915e-48 | -8.615850e-47 |
| Msa0227340 | Msa1428900 | 0.822686 | 2.074185e-53 | -8.615850e-47 |
| Msa1238170 | Msa1428900 | 0.826716 | 2.329257e-54 | -8.615850e-47 |
| Msa1238600 | Msa1428900 | 0.834381 | 3.096884e-56 | -8.615850e-47 |
| Msa0432160 | Msa1428900 | 0.813891 | 2.034186e-51 | -8.615850e-47 |
| Msa0476680 | Msa1428900 | 0.817880 | 2.621283e-52 | -8.615850e-47 |
| Msa0999680 | Msa1428900 | 0.808869 | 2.504802e-50 | -8.615850e-47 |
| Msa1026480 | Msa1428900 | 0.840127 | 1.048362e-57 | -8.615850e-47 |
| Msa1030810 | Msa1428900 | 0.816918 | 4.316290e-52 | -8.615850e-47 |
| Msa1069890 | Msa1428900 | 0.826793 | 2.232134e-54 | -8.615850e-47 |
| Msa0251710 | Msa1428900 | 0.811929 | 5.474481e-51 | -8.615850e-47 |
| Msa0264830 | Msa1428900 | 0.830058 | 3.637015e-55 | -8.615850e-47 |
| Msa0302870 | Msa1428900 | 0.826598 | 2.484355e-54 | -8.615850e-47 |
| Msa0311510 | Msa1428900 | 0.806564 | 7.738661e-50 | -8.615850e-47 |
| Msa0340340 | Msa1428900 | 0.828420 | 9.078417e-55 | -8.615850e-47 |
| Msa1129330 | Msa1428900 | 0.808666 | 2.768921e-50 | -8.615850e-47 |
| Msa1184690 | Msa1428900 | 0.807487 | 4.935711e-50 | -8.615850e-47 |
| Msa0484800 | Msa1428900 | 0.822608 | 2.163146e-53 | -8.615850e-47 |
| Msa0521010 | Msa1428900 | 0.812840 | 3.462987e-51 | -8.615850e-47 |
| Msa0549890 | Msa1428900 | 0.812208 | 4.759978e-51 | -8.615850e-47 |
| Msa0899970 | Msa1428900 | 0.812929 | 3.309821e-51 | -8.615850e-47 |
| Msa0965290 | Msa1428900 | 0.804529 | 2.068316e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428900 | MtrunA17_Chr5g0446271 | 88.474 | 321 | 6 | 1 | 1 | 321 | 34 | 323 | 0.0 | 568 |
| Msa1428900 | MtrunA17_Chr3g0101841 | 71.111 | 315 | 81 | 2 | 17 | 321 | 79 | 393 | 5.16e-159 | 449 |
| Msa1428900 | MtrunA17_Chr8g0347531 | 60.839 | 286 | 108 | 1 | 36 | 321 | 62 | 343 | 1.90e-124 | 360 |
| Msa1428900 | MtrunA17_Chr5g0406711 | 48.243 | 313 | 151 | 4 | 13 | 320 | 8 | 314 | 1.32e-95 | 286 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1428900 | AT3G13110.1 | 64.308 | 325 | 104 | 3 | 5 | 321 | 71 | 391 | 5.70e-147 | 419 |
| Msa1428900 | AT1G55920.1 | 66.890 | 299 | 91 | 1 | 23 | 321 | 24 | 314 | 1.60e-145 | 412 |
| Msa1428900 | AT5G56760.1 | 61.567 | 268 | 102 | 1 | 55 | 321 | 45 | 312 | 4.99e-115 | 335 |
| Msa1428900 | AT4G35640.1 | 50.495 | 303 | 142 | 3 | 18 | 320 | 38 | 332 | 1.55e-94 | 285 |
| Msa1428900 | AT2G17640.1 | 54.104 | 268 | 117 | 2 | 53 | 320 | 34 | 295 | 2.15e-91 | 275 |
Find 68 sgRNAs with CRISPR-Local
Find 164 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGGCGCGGGAACTTGTATTT+TGG | 0.185561 | tig0026416:+28414 | Msa1428900:CDS |
| GGAATCTTATCAAGTTTAAT+AGG | 0.262166 | tig0026416:-28556 | None:intergenic |
| GTTGGTGAAACTGCTGTTAT+TGG | 0.286982 | tig0026416:+28298 | Msa1428900:CDS |
| ATTGGTGACGGGGTGCTTAT+AGG | 0.319174 | tig0026416:+28394 | Msa1428900:CDS |
| CAAGGTGTTGATCCCATATC+TGG | 0.330087 | tig0026416:-27759 | None:intergenic |
| AGCACCCCGTCACCAATCTT+TGG | 0.347021 | tig0026416:-28388 | None:intergenic |
| TTCACACCAAGTTCCAGATA+TGG | 0.353879 | tig0026416:+27746 | Msa1428900:CDS |
| CCTATCGCCATGTGCCTTAC+CGG | 0.354620 | tig0026416:-28362 | None:intergenic |
| AATCTTGTCACAGAAATCAT+TGG | 0.355787 | tig0026416:+27910 | Msa1428900:CDS |
| TAATAGTAACTAGACAAAAT+TGG | 0.360866 | tig0026416:-27881 | None:intergenic |
| TTCTTTGAATTAGCATCAAC+AGG | 0.364623 | tig0026416:-27686 | None:intergenic |
| ATTGGTGATGGTGCTAAAAT+TGG | 0.373817 | tig0026416:+28448 | Msa1428900:CDS |
| GAAATCATTGGAAACTGCTT+TGG | 0.380279 | tig0026416:+27922 | Msa1428900:CDS |
| GACTACCGTTGTTGGGAATC+CGG | 0.396009 | tig0026416:+28507 | Msa1428900:CDS |
| TTTGGGGTTGATATTCATCC+TGG | 0.412211 | tig0026416:+28226 | Msa1428900:CDS |
| CATTGTTTCTTGAATTTCAA+AGG | 0.417026 | tig0026416:+28106 | Msa1428900:CDS |
| GGGAATCCGGCTAAATTGAT+TGG | 0.417683 | tig0026416:+28520 | Msa1428900:CDS |
| GCTCATAATTTGTGGTCAAA+TGG | 0.421298 | tig0026416:+28157 | Msa1428900:CDS |
| TATGATTCAGAATCGCGTTT+CGG | 0.428319 | tig0026416:+28198 | Msa1428900:CDS |
| TAAGATTCCTAGCCACACTA+TGG | 0.429403 | tig0026416:+28570 | Msa1428900:CDS |
| CTCCAAGGACTACCGTTGTT+GGG | 0.430566 | tig0026416:+28500 | Msa1428900:CDS |
| TCACACCAAGTTCCAGATAT+GGG | 0.433106 | tig0026416:+27747 | Msa1428900:CDS |
| CCTCCAAGGACTACCGTTGT+TGG | 0.444028 | tig0026416:+28499 | Msa1428900:CDS |
| TTCCCTCCAATCAATTTAGC+CGG | 0.459568 | tig0026416:-28526 | None:intergenic |
| TTCCCAACAACGGTAGTCCT+TGG | 0.463382 | tig0026416:-28502 | None:intergenic |
| GGCGATAGGCATCCAAAGAT+TGG | 0.470090 | tig0026416:+28376 | Msa1428900:CDS |
| AGTTGTGGAACAATCTGAAA+AGG | 0.473399 | tig0026416:+27793 | Msa1428900:CDS |
| ATTCATCCTGGAGCTAAGAT+TGG | 0.476533 | tig0026416:+28238 | Msa1428900:CDS |
| TGCTGGTTCAGTTGTGATCA+AGG | 0.485621 | tig0026416:+28471 | Msa1428900:CDS |
| AGATCAGAAAGTGTTGTACT+AGG | 0.509118 | tig0026416:-27983 | None:intergenic |
| ATAGGGTAGCTCATAATTTG+TGG | 0.510040 | tig0026416:+28149 | Msa1428900:CDS |
| CCACTTCCAATCTTAGCTCC+AGG | 0.510730 | tig0026416:-28244 | None:intergenic |
| CCTGGAGCTAAGATTGGAAG+TGG | 0.517686 | tig0026416:+28244 | Msa1428900:CDS |
| TTGCACGGTGTGACGTTGGG+AGG | 0.518697 | tig0026416:+28337 | Msa1428900:CDS |
| TTTAGCATGTCAAGCTCATA+GGG | 0.523451 | tig0026416:+28132 | Msa1428900:CDS |
| GGTGTGACGTTGGGAGGGAC+CGG | 0.524462 | tig0026416:+28343 | Msa1428900:CDS |
| GGCATCCAAAGATTGGTGAC+GGG | 0.531755 | tig0026416:+28383 | Msa1428900:CDS |
| GGGAATATTAAGATTGGTGA+TGG | 0.534999 | tig0026416:+28436 | Msa1428900:CDS |
| TGAACATGACTTATACAAGC+AGG | 0.543036 | tig0026416:-28085 | None:intergenic |
| GATGGTGCTAAAATTGGTGC+TGG | 0.548397 | tig0026416:+28454 | Msa1428900:CDS |
| TGATCATGCAACTGGGATTG+TGG | 0.549413 | tig0026416:+28276 | Msa1428900:CDS |
| CACTGCTTAATTTAACAGCA+AGG | 0.553156 | tig0026416:-27952 | None:intergenic |
| ATAATTTGTGGTCAAATGGA+AGG | 0.554078 | tig0026416:+28161 | Msa1428900:CDS |
| TTGATCCCATATCTGGAACT+TGG | 0.557376 | tig0026416:-27752 | None:intergenic |
| CACAACTGAACTTGTATGCA+AGG | 0.562621 | tig0026416:-27777 | None:intergenic |
| GGAGGGACCGGTAAGGCACA+TGG | 0.563182 | tig0026416:+28355 | Msa1428900:CDS |
| TGCACGGTGTGACGTTGGGA+GGG | 0.567057 | tig0026416:+28338 | Msa1428900:CDS |
| CCGGTAAGGCACATGGCGAT+AGG | 0.572060 | tig0026416:+28362 | Msa1428900:CDS |
| CCAACAACGGTAGTCCTTGG+AGG | 0.574914 | tig0026416:-28499 | None:intergenic |
| AGGCATCCAAAGATTGGTGA+CGG | 0.575112 | tig0026416:+28382 | Msa1428900:CDS |
| CTTGCATACAAGTTCAGTTG+TGG | 0.582578 | tig0026416:+27778 | Msa1428900:CDS |
| AATCCGGCTAAATTGATTGG+AGG | 0.584845 | tig0026416:+28523 | Msa1428900:CDS |
| TTATGTGTGGATGAAGATGC+AGG | 0.590043 | tig0026416:+27829 | Msa1428900:CDS |
| TGACGGGGTGCTTATAGGCG+CGG | 0.592802 | tig0026416:+28399 | Msa1428900:CDS |
| ACATGATCCATAGTGTGGCT+AGG | 0.594971 | tig0026416:-28577 | None:intergenic |
| GGAACAATCTGAAAAGGTTG+AGG | 0.607641 | tig0026416:+27799 | Msa1428900:CDS |
| CATGCAACTGGGATTGTGGT+TGG | 0.611902 | tig0026416:+28280 | Msa1428900:CDS |
| GACGTTGGGAGGGACCGGTA+AGG | 0.614643 | tig0026416:+28348 | Msa1428900:CDS |
| ATCCGGCTAAATTGATTGGA+GGG | 0.620898 | tig0026416:+28524 | Msa1428900:CDS |
| TCACATGAATGATCATCATG+TGG | 0.621543 | tig0026416:-27716 | None:intergenic |
| GAACATGACTTATACAAGCA+GGG | 0.643802 | tig0026416:-28084 | None:intergenic |
| GATAACATAATCATAAAACT+CGG | 0.645462 | tig0026416:-28611 | None:intergenic |
| TGATCAAGGAAGTTCCTCCA+AGG | 0.647904 | tig0026416:+28485 | Msa1428900:CDS |
| TTGAGGATGAAGATTATGTG+TGG | 0.651581 | tig0026416:+27816 | Msa1428900:CDS |
| GCATCCAAAGATTGGTGACG+GGG | 0.669085 | tig0026416:+28384 | Msa1428900:CDS |
| CTGGAGCTAAGATTGGAAGT+GGG | 0.679499 | tig0026416:+28245 | Msa1428900:CDS |
| GTGCAACATGATCCATAGTG+TGG | 0.717179 | tig0026416:-28582 | None:intergenic |
| TTTAGCCGGATTCCCAACAA+CGG | 0.717753 | tig0026416:-28512 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TAATAGTAACTAGACAAAAT+TGG | - | tig0026416:27884-27903 | None:intergenic | 20.0% |
| !!! | TGATCTTTTTGTTAGAATTT+TGG | + | tig0026416:28000-28019 | Msa1428900:CDS | 20.0% |
| !! | GATAACATAATCATAAAACT+CGG | - | tig0026416:28614-28633 | None:intergenic | 20.0% |
| !! | TAATAGTAACTAGACAAAAT+TGG | - | tig0026416:27884-27903 | None:intergenic | 20.0% |
| !!! | TGATCTTTTTGTTAGAATTT+TGG | + | tig0026416:28000-28019 | Msa1428900:CDS | 20.0% |
| !! | GATAACATAATCATAAAACT+CGG | - | tig0026416:28614-28633 | None:intergenic | 20.0% |
| !! | CATTGTTTCTTGAATTTCAA+AGG | + | tig0026416:28106-28125 | Msa1428900:CDS | 25.0% |
| !!! | ATTTTGGGGAATATTAAGAT+TGG | + | tig0026416:28430-28449 | Msa1428900:CDS | 25.0% |
| ! | GGAATCTTATCAAGTTTAAT+AGG | - | tig0026416:28559-28578 | None:intergenic | 25.0% |
| !! | CATTGTTTCTTGAATTTCAA+AGG | + | tig0026416:28106-28125 | Msa1428900:CDS | 25.0% |
| !!! | ATTTTGGGGAATATTAAGAT+TGG | + | tig0026416:28430-28449 | Msa1428900:CDS | 25.0% |
| ! | GGAATCTTATCAAGTTTAAT+AGG | - | tig0026416:28559-28578 | None:intergenic | 25.0% |
| TTCTTTGAATTAGCATCAAC+AGG | - | tig0026416:27689-27708 | None:intergenic | 30.0% | |
| AATCTTGTCACAGAAATCAT+TGG | + | tig0026416:27910-27929 | Msa1428900:CDS | 30.0% | |
| ! | ATAATTTGTGGTCAAATGGA+AGG | + | tig0026416:28161-28180 | Msa1428900:CDS | 30.0% |
| ! | AATGATGTGTCTATTTTGCA+CGG | + | tig0026416:28322-28341 | Msa1428900:CDS | 30.0% |
| TTCTTTGAATTAGCATCAAC+AGG | - | tig0026416:27689-27708 | None:intergenic | 30.0% | |
| AATCTTGTCACAGAAATCAT+TGG | + | tig0026416:27910-27929 | Msa1428900:CDS | 30.0% | |
| ! | ATAATTTGTGGTCAAATGGA+AGG | + | tig0026416:28161-28180 | Msa1428900:CDS | 30.0% |
| ! | AATGATGTGTCTATTTTGCA+CGG | + | tig0026416:28322-28341 | Msa1428900:CDS | 30.0% |
| TCACATGAATGATCATCATG+TGG | - | tig0026416:27719-27738 | None:intergenic | 35.0% | |
| AGTTGTGGAACAATCTGAAA+AGG | + | tig0026416:27793-27812 | Msa1428900:CDS | 35.0% | |
| TTGAGGATGAAGATTATGTG+TGG | + | tig0026416:27816-27835 | Msa1428900:CDS | 35.0% | |
| GAAATCATTGGAAACTGCTT+TGG | + | tig0026416:27922-27941 | Msa1428900:CDS | 35.0% | |
| CACTGCTTAATTTAACAGCA+AGG | - | tig0026416:27955-27974 | None:intergenic | 35.0% | |
| !! | AGATCAGAAAGTGTTGTACT+AGG | - | tig0026416:27986-28005 | None:intergenic | 35.0% |
| GAACATGACTTATACAAGCA+GGG | - | tig0026416:28087-28106 | None:intergenic | 35.0% | |
| TGAACATGACTTATACAAGC+AGG | - | tig0026416:28088-28107 | None:intergenic | 35.0% | |
| ! | TTTTAGCATGTCAAGCTCAT+AGG | + | tig0026416:28131-28150 | Msa1428900:CDS | 35.0% |
| TTTAGCATGTCAAGCTCATA+GGG | + | tig0026416:28132-28151 | Msa1428900:CDS | 35.0% | |
| ATAGGGTAGCTCATAATTTG+TGG | + | tig0026416:28149-28168 | Msa1428900:CDS | 35.0% | |
| ! | GCTCATAATTTGTGGTCAAA+TGG | + | tig0026416:28157-28176 | Msa1428900:CDS | 35.0% |
| TATGATTCAGAATCGCGTTT+CGG | + | tig0026416:28198-28217 | Msa1428900:CDS | 35.0% | |
| ! | ATTTTGCTTGATCATGCAAC+TGG | + | tig0026416:28268-28287 | Msa1428900:CDS | 35.0% |
| ! | TTTTGCTTGATCATGCAACT+GGG | + | tig0026416:28269-28288 | Msa1428900:CDS | 35.0% |
| GGGAATATTAAGATTGGTGA+TGG | + | tig0026416:28436-28455 | Msa1428900:CDS | 35.0% | |
| !! | ATTGGTGATGGTGCTAAAAT+TGG | + | tig0026416:28448-28467 | Msa1428900:CDS | 35.0% |
| TCACATGAATGATCATCATG+TGG | - | tig0026416:27719-27738 | None:intergenic | 35.0% | |
| AGTTGTGGAACAATCTGAAA+AGG | + | tig0026416:27793-27812 | Msa1428900:CDS | 35.0% | |
| TTGAGGATGAAGATTATGTG+TGG | + | tig0026416:27816-27835 | Msa1428900:CDS | 35.0% | |
| GAAATCATTGGAAACTGCTT+TGG | + | tig0026416:27922-27941 | Msa1428900:CDS | 35.0% | |
| CACTGCTTAATTTAACAGCA+AGG | - | tig0026416:27955-27974 | None:intergenic | 35.0% | |
| !! | AGATCAGAAAGTGTTGTACT+AGG | - | tig0026416:27986-28005 | None:intergenic | 35.0% |
| GAACATGACTTATACAAGCA+GGG | - | tig0026416:28087-28106 | None:intergenic | 35.0% | |
| TGAACATGACTTATACAAGC+AGG | - | tig0026416:28088-28107 | None:intergenic | 35.0% | |
| ! | TTTTAGCATGTCAAGCTCAT+AGG | + | tig0026416:28131-28150 | Msa1428900:CDS | 35.0% |
| TTTAGCATGTCAAGCTCATA+GGG | + | tig0026416:28132-28151 | Msa1428900:CDS | 35.0% | |
| ATAGGGTAGCTCATAATTTG+TGG | + | tig0026416:28149-28168 | Msa1428900:CDS | 35.0% | |
| ! | GCTCATAATTTGTGGTCAAA+TGG | + | tig0026416:28157-28176 | Msa1428900:CDS | 35.0% |
| TATGATTCAGAATCGCGTTT+CGG | + | tig0026416:28198-28217 | Msa1428900:CDS | 35.0% | |
| ! | ATTTTGCTTGATCATGCAAC+TGG | + | tig0026416:28268-28287 | Msa1428900:CDS | 35.0% |
| ! | TTTTGCTTGATCATGCAACT+GGG | + | tig0026416:28269-28288 | Msa1428900:CDS | 35.0% |
| GGGAATATTAAGATTGGTGA+TGG | + | tig0026416:28436-28455 | Msa1428900:CDS | 35.0% | |
| !! | ATTGGTGATGGTGCTAAAAT+TGG | + | tig0026416:28448-28467 | Msa1428900:CDS | 35.0% |
| TTCACACCAAGTTCCAGATA+TGG | + | tig0026416:27746-27765 | Msa1428900:CDS | 40.0% | |
| TCACACCAAGTTCCAGATAT+GGG | + | tig0026416:27747-27766 | Msa1428900:CDS | 40.0% | |
| ! | TTGATCCCATATCTGGAACT+TGG | - | tig0026416:27755-27774 | None:intergenic | 40.0% |
| CACAACTGAACTTGTATGCA+AGG | - | tig0026416:27780-27799 | None:intergenic | 40.0% | |
| CTTGCATACAAGTTCAGTTG+TGG | + | tig0026416:27778-27797 | Msa1428900:CDS | 40.0% | |
| GGAACAATCTGAAAAGGTTG+AGG | + | tig0026416:27799-27818 | Msa1428900:CDS | 40.0% | |
| TTATGTGTGGATGAAGATGC+AGG | + | tig0026416:27829-27848 | Msa1428900:CDS | 40.0% | |
| ! | AATCGCGTTTCGGAAGTTTT+TGG | + | tig0026416:28208-28227 | Msa1428900:CDS | 40.0% |
| ! | ATCGCGTTTCGGAAGTTTTT+GGG | + | tig0026416:28209-28228 | Msa1428900:CDS | 40.0% |
| !! | TTTGGGGTTGATATTCATCC+TGG | + | tig0026416:28226-28245 | Msa1428900:CDS | 40.0% |
| ATTCATCCTGGAGCTAAGAT+TGG | + | tig0026416:28238-28257 | Msa1428900:CDS | 40.0% | |
| ! | GTTGGTGAAACTGCTGTTAT+TGG | + | tig0026416:28298-28317 | Msa1428900:CDS | 40.0% |
| AATCCGGCTAAATTGATTGG+AGG | + | tig0026416:28523-28542 | Msa1428900:CDS | 40.0% | |
| ATCCGGCTAAATTGATTGGA+GGG | + | tig0026416:28524-28543 | Msa1428900:CDS | 40.0% | |
| TTCCCTCCAATCAATTTAGC+CGG | - | tig0026416:28529-28548 | None:intergenic | 40.0% | |
| TAAGATTCCTAGCCACACTA+TGG | + | tig0026416:28570-28589 | Msa1428900:CDS | 40.0% | |
| TTCACACCAAGTTCCAGATA+TGG | + | tig0026416:27746-27765 | Msa1428900:CDS | 40.0% | |
| TCACACCAAGTTCCAGATAT+GGG | + | tig0026416:27747-27766 | Msa1428900:CDS | 40.0% | |
| ! | TTGATCCCATATCTGGAACT+TGG | - | tig0026416:27755-27774 | None:intergenic | 40.0% |
| CACAACTGAACTTGTATGCA+AGG | - | tig0026416:27780-27799 | None:intergenic | 40.0% | |
| CTTGCATACAAGTTCAGTTG+TGG | + | tig0026416:27778-27797 | Msa1428900:CDS | 40.0% | |
| GGAACAATCTGAAAAGGTTG+AGG | + | tig0026416:27799-27818 | Msa1428900:CDS | 40.0% | |
| TTATGTGTGGATGAAGATGC+AGG | + | tig0026416:27829-27848 | Msa1428900:CDS | 40.0% | |
| ! | AATCGCGTTTCGGAAGTTTT+TGG | + | tig0026416:28208-28227 | Msa1428900:CDS | 40.0% |
| ! | ATCGCGTTTCGGAAGTTTTT+GGG | + | tig0026416:28209-28228 | Msa1428900:CDS | 40.0% |
| !! | TTTGGGGTTGATATTCATCC+TGG | + | tig0026416:28226-28245 | Msa1428900:CDS | 40.0% |
| ATTCATCCTGGAGCTAAGAT+TGG | + | tig0026416:28238-28257 | Msa1428900:CDS | 40.0% | |
| ! | GTTGGTGAAACTGCTGTTAT+TGG | + | tig0026416:28298-28317 | Msa1428900:CDS | 40.0% |
| AATCCGGCTAAATTGATTGG+AGG | + | tig0026416:28523-28542 | Msa1428900:CDS | 40.0% | |
| ATCCGGCTAAATTGATTGGA+GGG | + | tig0026416:28524-28543 | Msa1428900:CDS | 40.0% | |
| TTCCCTCCAATCAATTTAGC+CGG | - | tig0026416:28529-28548 | None:intergenic | 40.0% | |
| TAAGATTCCTAGCCACACTA+TGG | + | tig0026416:28570-28589 | Msa1428900:CDS | 40.0% | |
| !! | CAAGGTGTTGATCCCATATC+TGG | - | tig0026416:27762-27781 | None:intergenic | 45.0% |
| ! | TCGCGTTTCGGAAGTTTTTG+GGG | + | tig0026416:28210-28229 | Msa1428900:CDS | 45.0% |
| CTGGAGCTAAGATTGGAAGT+GGG | + | tig0026416:28245-28264 | Msa1428900:CDS | 45.0% | |
| TGATCATGCAACTGGGATTG+TGG | + | tig0026416:28276-28295 | Msa1428900:CDS | 45.0% | |
| ! | TATTTTGCACGGTGTGACGT+TGG | + | tig0026416:28333-28352 | Msa1428900:CDS | 45.0% |
| ! | ATTTTGCACGGTGTGACGTT+GGG | + | tig0026416:28334-28353 | Msa1428900:CDS | 45.0% |
| AGGCATCCAAAGATTGGTGA+CGG | + | tig0026416:28382-28401 | Msa1428900:CDS | 45.0% | |
| ! | GATGGTGCTAAAATTGGTGC+TGG | + | tig0026416:28454-28473 | Msa1428900:CDS | 45.0% |
| !! | TGCTGGTTCAGTTGTGATCA+AGG | + | tig0026416:28471-28490 | Msa1428900:CDS | 45.0% |
| TGATCAAGGAAGTTCCTCCA+AGG | + | tig0026416:28485-28504 | Msa1428900:CDS | 45.0% | |
| TTTAGCCGGATTCCCAACAA+CGG | - | tig0026416:28515-28534 | None:intergenic | 45.0% | |
| GGGAATCCGGCTAAATTGAT+TGG | + | tig0026416:28520-28539 | Msa1428900:CDS | 45.0% | |
| ACATGATCCATAGTGTGGCT+AGG | - | tig0026416:28580-28599 | None:intergenic | 45.0% | |
| GTGCAACATGATCCATAGTG+TGG | - | tig0026416:28585-28604 | None:intergenic | 45.0% | |
| !! | CAAGGTGTTGATCCCATATC+TGG | - | tig0026416:27762-27781 | None:intergenic | 45.0% |
| ! | TCGCGTTTCGGAAGTTTTTG+GGG | + | tig0026416:28210-28229 | Msa1428900:CDS | 45.0% |
| CTGGAGCTAAGATTGGAAGT+GGG | + | tig0026416:28245-28264 | Msa1428900:CDS | 45.0% | |
| TGATCATGCAACTGGGATTG+TGG | + | tig0026416:28276-28295 | Msa1428900:CDS | 45.0% | |
| ! | TATTTTGCACGGTGTGACGT+TGG | + | tig0026416:28333-28352 | Msa1428900:CDS | 45.0% |
| ! | ATTTTGCACGGTGTGACGTT+GGG | + | tig0026416:28334-28353 | Msa1428900:CDS | 45.0% |
| AGGCATCCAAAGATTGGTGA+CGG | + | tig0026416:28382-28401 | Msa1428900:CDS | 45.0% | |
| ! | GATGGTGCTAAAATTGGTGC+TGG | + | tig0026416:28454-28473 | Msa1428900:CDS | 45.0% |
| !! | TGCTGGTTCAGTTGTGATCA+AGG | + | tig0026416:28471-28490 | Msa1428900:CDS | 45.0% |
| TGATCAAGGAAGTTCCTCCA+AGG | + | tig0026416:28485-28504 | Msa1428900:CDS | 45.0% | |
| TTTAGCCGGATTCCCAACAA+CGG | - | tig0026416:28515-28534 | None:intergenic | 45.0% | |
| GGGAATCCGGCTAAATTGAT+TGG | + | tig0026416:28520-28539 | Msa1428900:CDS | 45.0% | |
| ACATGATCCATAGTGTGGCT+AGG | - | tig0026416:28580-28599 | None:intergenic | 45.0% | |
| GTGCAACATGATCCATAGTG+TGG | - | tig0026416:28585-28604 | None:intergenic | 45.0% | |
| CCACTTCCAATCTTAGCTCC+AGG | - | tig0026416:28247-28266 | None:intergenic | 50.0% | |
| CCTGGAGCTAAGATTGGAAG+TGG | + | tig0026416:28244-28263 | Msa1428900:CDS | 50.0% | |
| CATGCAACTGGGATTGTGGT+TGG | + | tig0026416:28280-28299 | Msa1428900:CDS | 50.0% | |
| GGCGATAGGCATCCAAAGAT+TGG | + | tig0026416:28376-28395 | Msa1428900:CDS | 50.0% | |
| ! | GGCATCCAAAGATTGGTGAC+GGG | + | tig0026416:28383-28402 | Msa1428900:CDS | 50.0% |
| !! | GCATCCAAAGATTGGTGACG+GGG | + | tig0026416:28384-28403 | Msa1428900:CDS | 50.0% |
| !! | ATTGGTGACGGGGTGCTTAT+AGG | + | tig0026416:28394-28413 | Msa1428900:CDS | 50.0% |
| ! | AGGCGCGGGAACTTGTATTT+TGG | + | tig0026416:28414-28433 | Msa1428900:CDS | 50.0% |
| ! | GGCGCGGGAACTTGTATTTT+GGG | + | tig0026416:28415-28434 | Msa1428900:CDS | 50.0% |
| ! | GCGCGGGAACTTGTATTTTG+GGG | + | tig0026416:28416-28435 | Msa1428900:CDS | 50.0% |
| CTCCAAGGACTACCGTTGTT+GGG | + | tig0026416:28500-28519 | Msa1428900:CDS | 50.0% | |
| TTCCCAACAACGGTAGTCCT+TGG | - | tig0026416:28505-28524 | None:intergenic | 50.0% | |
| GACTACCGTTGTTGGGAATC+CGG | + | tig0026416:28507-28526 | Msa1428900:CDS | 50.0% | |
| CCACTTCCAATCTTAGCTCC+AGG | - | tig0026416:28247-28266 | None:intergenic | 50.0% | |
| CCTGGAGCTAAGATTGGAAG+TGG | + | tig0026416:28244-28263 | Msa1428900:CDS | 50.0% | |
| CATGCAACTGGGATTGTGGT+TGG | + | tig0026416:28280-28299 | Msa1428900:CDS | 50.0% | |
| GGCGATAGGCATCCAAAGAT+TGG | + | tig0026416:28376-28395 | Msa1428900:CDS | 50.0% | |
| ! | GGCATCCAAAGATTGGTGAC+GGG | + | tig0026416:28383-28402 | Msa1428900:CDS | 50.0% |
| !! | GCATCCAAAGATTGGTGACG+GGG | + | tig0026416:28384-28403 | Msa1428900:CDS | 50.0% |
| !! | ATTGGTGACGGGGTGCTTAT+AGG | + | tig0026416:28394-28413 | Msa1428900:CDS | 50.0% |
| ! | AGGCGCGGGAACTTGTATTT+TGG | + | tig0026416:28414-28433 | Msa1428900:CDS | 50.0% |
| ! | GGCGCGGGAACTTGTATTTT+GGG | + | tig0026416:28415-28434 | Msa1428900:CDS | 50.0% |
| ! | GCGCGGGAACTTGTATTTTG+GGG | + | tig0026416:28416-28435 | Msa1428900:CDS | 50.0% |
| CTCCAAGGACTACCGTTGTT+GGG | + | tig0026416:28500-28519 | Msa1428900:CDS | 50.0% | |
| TTCCCAACAACGGTAGTCCT+TGG | - | tig0026416:28505-28524 | None:intergenic | 50.0% | |
| GACTACCGTTGTTGGGAATC+CGG | + | tig0026416:28507-28526 | Msa1428900:CDS | 50.0% | |
| CCTATCGCCATGTGCCTTAC+CGG | - | tig0026416:28365-28384 | None:intergenic | 55.0% | |
| AGCACCCCGTCACCAATCTT+TGG | - | tig0026416:28391-28410 | None:intergenic | 55.0% | |
| CCAACAACGGTAGTCCTTGG+AGG | - | tig0026416:28502-28521 | None:intergenic | 55.0% | |
| CCTCCAAGGACTACCGTTGT+TGG | + | tig0026416:28499-28518 | Msa1428900:CDS | 55.0% | |
| CCTATCGCCATGTGCCTTAC+CGG | - | tig0026416:28365-28384 | None:intergenic | 55.0% | |
| AGCACCCCGTCACCAATCTT+TGG | - | tig0026416:28391-28410 | None:intergenic | 55.0% | |
| CCAACAACGGTAGTCCTTGG+AGG | - | tig0026416:28502-28521 | None:intergenic | 55.0% | |
| CCTCCAAGGACTACCGTTGT+TGG | + | tig0026416:28499-28518 | Msa1428900:CDS | 55.0% | |
| TTGCACGGTGTGACGTTGGG+AGG | + | tig0026416:28337-28356 | Msa1428900:CDS | 60.0% | |
| TGCACGGTGTGACGTTGGGA+GGG | + | tig0026416:28338-28357 | Msa1428900:CDS | 60.0% | |
| CCGGTAAGGCACATGGCGAT+AGG | + | tig0026416:28362-28381 | Msa1428900:CDS | 60.0% | |
| ! | TGACGGGGTGCTTATAGGCG+CGG | + | tig0026416:28399-28418 | Msa1428900:CDS | 60.0% |
| TTGCACGGTGTGACGTTGGG+AGG | + | tig0026416:28337-28356 | Msa1428900:CDS | 60.0% | |
| TGCACGGTGTGACGTTGGGA+GGG | + | tig0026416:28338-28357 | Msa1428900:CDS | 60.0% | |
| CCGGTAAGGCACATGGCGAT+AGG | + | tig0026416:28362-28381 | Msa1428900:CDS | 60.0% | |
| ! | TGACGGGGTGCTTATAGGCG+CGG | + | tig0026416:28399-28418 | Msa1428900:CDS | 60.0% |
| GGTGTGACGTTGGGAGGGAC+CGG | + | tig0026416:28343-28362 | Msa1428900:CDS | 65.0% | |
| GACGTTGGGAGGGACCGGTA+AGG | + | tig0026416:28348-28367 | Msa1428900:CDS | 65.0% | |
| GGAGGGACCGGTAAGGCACA+TGG | + | tig0026416:28355-28374 | Msa1428900:CDS | 65.0% | |
| ! | GACGGGGTGCTTATAGGCGC+GGG | + | tig0026416:28400-28419 | Msa1428900:CDS | 65.0% |
| GGTGTGACGTTGGGAGGGAC+CGG | + | tig0026416:28343-28362 | Msa1428900:CDS | 65.0% | |
| GACGTTGGGAGGGACCGGTA+AGG | + | tig0026416:28348-28367 | Msa1428900:CDS | 65.0% | |
| GGAGGGACCGGTAAGGCACA+TGG | + | tig0026416:28355-28374 | Msa1428900:CDS | 65.0% | |
| ! | GACGGGGTGCTTATAGGCGC+GGG | + | tig0026416:28400-28419 | Msa1428900:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0026416 | gene | 27671 | 28636 | 27671 | ID=Msa1428900;Name=Msa1428900 |
| tig0026416 | mRNA | 27671 | 28636 | 27671 | ID=Msa1428900-mRNA-1;Parent=Msa1428900;Name=Msa1428900-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|321 |
| tig0026416 | exon | 27671 | 28636 | 27671 | ID=Msa1428900-mRNA-1:exon:6203;Parent=Msa1428900-mRNA-1 |
| tig0026416 | CDS | 27671 | 28636 | 27671 | ID=Msa1428900-mRNA-1:cds;Parent=Msa1428900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
