AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0251710


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251710 MtrunA17_Chr2g0310111 97.143 350 8 1 1 350 1 348 0.0 702
Msa0251710 MtrunA17_Chr8g0356981 78.299 341 73 1 10 350 2 341 0.0 532
Msa0251710 MtrunA17_Chr2g0331311 60.947 338 127 3 16 348 7 344 2.34e-154 437
Msa0251710 MtrunA17_Chr7g0253651 63.467 323 115 3 26 345 21 343 4.76e-150 426
Msa0251710 MtrunA17_Chr2g0304231 59.939 327 130 1 20 345 17 343 5.27e-145 413
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0251710 AT1G54320.1 75.076 329 80 2 23 350 22 349 0.0 513
Msa0251710 AT1G16360.2 68.391 348 108 2 3 349 2 348 0.0 504
Msa0251710 AT3G12740.1 73.252 329 86 2 23 350 23 350 3.76e-179 500
Msa0251710 AT1G79450.1 69.253 348 105 2 3 349 2 348 2.85e-178 498
Msa0251710 AT1G16360.1 70.533 319 92 2 32 349 17 334 8.04e-171 479
Msa0251710 AT1G16360.4 69.180 305 92 2 32 335 17 320 2.24e-158 447
Msa0251710 AT1G79450.2 72.464 276 74 2 75 349 7 281 7.58e-149 421
Msa0251710 AT5G46150.1 53.392 339 150 3 12 345 3 338 1.98e-129 374
Msa0251710 AT5G46150.2 53.392 339 150 3 12 345 3 338 1.98e-129 374
Msa0251710 AT5G46150.3 53.823 327 146 2 12 333 3 329 1.24e-127 369
Msa0251710 AT1G16360.3 64.904 208 71 2 32 238 17 223 2.17e-95 283
Msa0251710 AT1G16360.5 64.904 208 71 2 32 238 17 223 2.17e-95 283
Msa0251710 AT5G46150.4 51.082 231 108 2 12 237 3 233 8.13e-83 252

Find 88 sgRNAs with CRISPR-Local

Find 433 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGAGAGGGAGTATTTGTTTC+AGG 0.214632 2_2:-41945736 None:intergenic
ATTCGATTCCGATTCATAAA+TGG 0.243648 2_2:+41939807 Msa0251710:exon
CAGGTTGTTGAAATTGTTTA+TGG 0.247565 2_2:+41941633 Msa0251710:intron
AAGCCTTGTAATATTGAAAA+TGG 0.249905 2_2:-41945536 None:intergenic
AGTGATAGGGAGCACAAATT+TGG 0.303708 2_2:+41943147 Msa0251710:CDS
ACATCTACTTAACTACTTAC+TGG 0.307573 2_2:+41945591 Msa0251710:three_prime_UTR
TTGCATACCGGCGATGATTC+TGG 0.314059 2_2:-41941913 None:intergenic
GCAGCAGCAGCAGAAGCTCC+TGG 0.315670 2_2:+41939847 Msa0251710:CDS
TATCGGAGTTGCTTCGCTAA+TGG 0.328460 2_2:+41941509 Msa0251710:CDS
CCCTAGAAAATATAGAGAAT+TGG 0.332987 2_2:-41939749 None:intergenic
TGTCTCCCTGCAGGTTATTT+CGG 0.333817 2_2:+41941455 Msa0251710:intron
CTGTTATTTGCAGTATCTTC+AGG 0.335452 2_2:-41943015 None:intergenic
TTCCAGAATGGTTCTATAAT+AGG 0.338624 2_2:+41943192 Msa0251710:CDS
GCATCTCCTGGAAGAGTGAT+AGG 0.345405 2_2:+41943133 Msa0251710:CDS
AGCTGATAGTATACATAAAT+AGG 0.366101 2_2:-41941878 None:intergenic
AATTGAAAAGAAATATTAGT+TGG 0.370021 2_2:-41945857 None:intergenic
GTGCTCCCTATCACTCTTCC+AGG 0.372048 2_2:-41943139 None:intergenic
CACCTATTATAGAACCATTC+TGG 0.379889 2_2:-41943194 None:intergenic
CTGAAGATACTGCAAATAAC+AGG 0.383558 2_2:+41943016 Msa0251710:CDS
CCTAGAAAATATAGAGAATT+GGG 0.385487 2_2:-41939748 None:intergenic
CATCATATTTGTCATGGAAT+AGG 0.386112 2_2:+41945461 Msa0251710:CDS
CCATATAACTTCCTAAAAGT+TGG 0.396101 2_2:-41943650 None:intergenic
GAAAGTTGACTTGGGCAGTT+TGG 0.406456 2_2:-41939694 None:intergenic
AGGTTGTTGAAATTGTTTAT+GGG 0.407143 2_2:+41941634 Msa0251710:intron
TACCTTGTGGTCTCATAGCT+TGG 0.407481 2_2:+41943046 Msa0251710:CDS
GGCATTGCTTATCTCACTGT+TGG 0.409859 2_2:+41943812 Msa0251710:CDS
CGTCAAATTTGTATTGTTGA+CGG 0.430499 2_2:-41943097 None:intergenic
TATAACACATACAGTTTCAA+TGG 0.439187 2_2:+41943731 Msa0251710:CDS
GTATGAGTCAGACTGCTTAC+CGG 0.440324 2_2:+41941656 Msa0251710:CDS
TTCTTTCTTTGTAGGCAACT+TGG 0.441202 2_2:+41945433 Msa0251710:intron
CTTGGTTATTCTACAGTGGC+AGG 0.447008 2_2:+41945556 Msa0251710:three_prime_UTR
ATTGCTTATCTCACTGTTGG+AGG 0.447358 2_2:+41943815 Msa0251710:CDS
TTCGCTAATGGCTTCAAGAA+AGG 0.457194 2_2:+41941521 Msa0251710:CDS
ATTGAAAAGAAATATTAGTT+GGG 0.463869 2_2:-41945856 None:intergenic
CTACTACTAGCTGGCTTGGT+GGG 0.464976 2_2:+41943774 Msa0251710:CDS
AATAGGTGATTTCATGTGCT+TGG 0.475930 2_2:-41941861 None:intergenic
CGTCAACAATACAAATTTGA+CGG 0.477985 2_2:+41943098 Msa0251710:CDS
AGCAGGAGGATCTTATTGTC+TGG 0.479332 2_2:+41943609 Msa0251710:CDS
TATGGAACAGTTGAATGAGC+AGG 0.483440 2_2:+41943592 Msa0251710:intron
CTTACTGAGTTCTCTCCCTT+AGG 0.490717 2_2:-41942982 None:intergenic
CTATTCCATGACAAATATGA+TGG 0.491865 2_2:-41945460 None:intergenic
GCAGTGGAATCAGCAGATCC+AGG 0.499965 2_2:-41939865 None:intergenic
TAACTTCCTAAAAGTTGGTA+AGG 0.500049 2_2:-41943645 None:intergenic
TGAACAAGAAAGGCATCTCC+TGG 0.500765 2_2:+41943121 Msa0251710:CDS
GTCGAAGTGATGAGCAATTG+AGG 0.506813 2_2:+41942956 Msa0251710:CDS
ACCTCGTCTTTAGTGCCATC+CGG 0.507629 2_2:-41941675 None:intergenic
GAGATCCATCATATTTGTCA+TGG 0.508248 2_2:+41945455 Msa0251710:CDS
GGTGGGAAGAATGATTTCCT+TGG 0.509013 2_2:+41943791 Msa0251710:CDS
GGAAGACGCCATTTATGAAT+CGG 0.511485 2_2:-41939815 None:intergenic
TGTATTTCTTCTTGGAGCAG+TGG 0.512487 2_2:-41939881 None:intergenic
TTTCAAGTGTTACATCTATG+AGG 0.517582 2_2:-41943703 None:intergenic
ATAGAGGTGGATTTGAATCA+AGG 0.521775 2_2:+41943677 Msa0251710:CDS
AGTGTTGTGTTCATTCCTAT+CGG 0.524757 2_2:+41941492 Msa0251710:CDS
GAAGTTATATGGAAAGATAG+AGG 0.534995 2_2:+41943661 Msa0251710:CDS
AATTTGACGGTGAACAAGAA+AGG 0.544214 2_2:+41943111 Msa0251710:CDS
ACCGCTCGAGGTGTAAGAAT+AGG 0.544478 2_2:-41941326 None:intergenic
GTAAGAATAGGCTTGCAAGC+TGG 0.553416 2_2:-41941314 None:intergenic
CTGTCTACTACTAGCTGGCT+TGG 0.554578 2_2:+41943770 Msa0251710:CDS
TGAGCAATTGAGGAGTCCTA+AGG 0.562902 2_2:+41942966 Msa0251710:CDS
GAGCAATTGAGGAGTCCTAA+GGG 0.567682 2_2:+41942967 Msa0251710:CDS
TCTACTACTAGCTGGCTTGG+TGG 0.574076 2_2:+41943773 Msa0251710:CDS
GTGATTGAAGAAAGTTGACT+TGG 0.574510 2_2:-41939703 None:intergenic
CCTAAAAGTTGGTAAGGCAG+CGG 0.576352 2_2:-41943639 None:intergenic
TGAGTATACACATGGAGAGA+GGG 0.583434 2_2:-41945751 None:intergenic
TCGTACTGTCTACTACTAGC+TGG 0.586718 2_2:+41943765 Msa0251710:CDS
GCATCAGAATTTAAATACAC+TGG 0.587795 2_2:+41945691 Msa0251710:three_prime_UTR
CATCTCCTGGAAGAGTGATA+GGG 0.595404 2_2:+41943134 Msa0251710:CDS
TCTAGTAGTGTTACCGCTCG+AGG 0.596890 2_2:-41941338 None:intergenic
ACTGGTATGTTATAATCTCG+TGG 0.599655 2_2:+41945709 Msa0251710:three_prime_UTR
ACATCTTAATGAATCGATAC+CGG 0.606029 2_2:+41943221 Msa0251710:CDS
ATTAGCGAAGCAACTCCGAT+AGG 0.608650 2_2:-41941507 None:intergenic
TTGAGTATACACATGGAGAG+AGG 0.608874 2_2:-41945752 None:intergenic
CAGTGAGATAAGCAATGCCA+AGG 0.614950 2_2:-41943808 None:intergenic
CTCCAAGCTATGAGACCACA+AGG 0.620952 2_2:-41943048 None:intergenic
GCCTATTCTTACACCTCGAG+CGG 0.621999 2_2:+41941325 Msa0251710:CDS
CAGAATGGTTCTATAATAGG+TGG 0.623008 2_2:+41943195 Msa0251710:CDS
AACAGGTCAATTGTACCTTG+TGG 0.623062 2_2:+41943033 Msa0251710:CDS
TTGTCATGGAATAGGACCCA+AGG 0.625152 2_2:+41945469 Msa0251710:CDS
TGGCTTGACAAAATATACAA+TGG 0.626612 2_2:-41943867 None:intergenic
GTTATATGGAAAGATAGAGG+TGG 0.643018 2_2:+41943664 Msa0251710:CDS
GAGTCAGACTGCTTACCGGA+TGG 0.645552 2_2:+41941660 Msa0251710:CDS
GGAACAGTTGAATGAGCAGG+AGG 0.647507 2_2:+41943595 Msa0251710:intron
GAGATGATTGAGTATACACA+TGG 0.664297 2_2:-41945759 None:intergenic
TCATGGAATAGGACCCAAGG+AGG 0.672030 2_2:+41945472 Msa0251710:CDS
AAGGCTTGGTTATTCTACAG+TGG 0.674305 2_2:+41945552 Msa0251710:three_prime_UTR
TGATTGAAGAAAGTTGACTT+GGG 0.679029 2_2:-41939702 None:intergenic
CATGGAATAGGACCCAAGGA+GGG 0.690721 2_2:+41945473 Msa0251710:CDS
ACCGGATGGCACTAAAGACG+AGG 0.712451 2_2:+41941674 Msa0251710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTATTTTATTTTTTAAAAT+AGG + chr2_2:41945223-41945242 Msa0251710:intron 0.0%
!! CAATTATTACAAATATATAA+AGG - chr2_2:41942868-41942887 None:intergenic 10.0%
!! TTTCAACAAAAAACAAAAAT+GGG - chr2_2:41939984-41940003 None:intergenic 15.0%
!!! TTGAAAGTTTTCATTTTTAA+TGG + chr2_2:41939998-41940017 Msa0251710:intron 15.0%
!! AGAAATAAAACAGTAATTAT+TGG - chr2_2:41941205-41941224 None:intergenic 15.0%
!!! TACTGTTTTATTTCTTATTT+TGG + chr2_2:41941210-41941229 Msa0251710:intron 15.0%
!!! ACTGTTTTATTTCTTATTTT+GGG + chr2_2:41941211-41941230 Msa0251710:intron 15.0%
!!! TACAATTTATTTTAAAGTCT+TGG + chr2_2:41942285-41942304 Msa0251710:intron 15.0%
!!! ACAATTTATTTTAAAGTCTT+GGG + chr2_2:41942286-41942305 Msa0251710:intron 15.0%
!!! TTAATTTTAGACAGTATATA+AGG + chr2_2:41942336-41942355 Msa0251710:intron 15.0%
!! TTTATTTATGTCAAGTAATT+TGG + chr2_2:41942388-41942407 Msa0251710:intron 15.0%
!! AATTAATTGAGTAAATAGAT+AGG + chr2_2:41942554-41942573 Msa0251710:intron 15.0%
!! ATAGTTATCTTCTATAATTT+AGG + chr2_2:41942923-41942942 Msa0251710:intron 15.0%
!! GATAAAAAAAAAAAAAACTG+TGG + chr2_2:41944249-41944268 Msa0251710:intron 15.0%
!!! ATTTTTAAAAATGAAAAGCA+CGG + chr2_2:41944355-41944374 Msa0251710:intron 15.0%
!!! ATTGTTGTTTTTTCTTTTTA+GGG - chr2_2:41945647-41945666 None:intergenic 15.0%
!!! AATTGTTGTTTTTTCTTTTT+AGG - chr2_2:41945648-41945667 None:intergenic 15.0%
!! ATTGAAAAGAAATATTAGTT+GGG - chr2_2:41945859-41945878 None:intergenic 15.0%
!! AATTGAAAAGAAATATTAGT+TGG - chr2_2:41945860-41945879 None:intergenic 15.0%
!! CTTTCAACAAAAAACAAAAA+TGG - chr2_2:41939985-41940004 None:intergenic 20.0%
!!! ATTTATGCGTTTCTTTAAAA+AGG + chr2_2:41940022-41940041 Msa0251710:intron 20.0%
!!! TTTATGCGTTTCTTTAAAAA+GGG + chr2_2:41940023-41940042 Msa0251710:intron 20.0%
!! TGTATGTTGTGAATAATAAT+GGG + chr2_2:41940202-41940221 Msa0251710:intron 20.0%
!! ATGTAATCTTAATACAATCA+AGG - chr2_2:41940584-41940603 None:intergenic 20.0%
!!! TATTTGTTTTAAGAAGTGTT+TGG + chr2_2:41941112-41941131 Msa0251710:intron 20.0%
!!! ATTTGTTTTAAGAAGTGTTT+GGG + chr2_2:41941113-41941132 Msa0251710:intron 20.0%
!! AATGAGCAATGAATTTAAAA+AGG - chr2_2:41941366-41941385 None:intergenic 20.0%
!!! ATGTACAACTATTCATTTTT+GGG - chr2_2:41942078-41942097 None:intergenic 20.0%
!!! AATGTACAACTATTCATTTT+TGG - chr2_2:41942079-41942098 None:intergenic 20.0%
!! AAAAATGAATAGTTGTACAT+TGG + chr2_2:41942078-41942097 Msa0251710:intron 20.0%
!! GTTCAACTTTCTTATAAAAT+TGG + chr2_2:41942244-41942263 Msa0251710:intron 20.0%
!! GAAATTAAATGAGCATTAAA+AGG + chr2_2:41942504-41942523 Msa0251710:intron 20.0%
!!! TTTAAGATGAAAAAGGTATT+TGG - chr2_2:41943517-41943536 None:intergenic 20.0%
!!! TTGAAAGTTTAAGATGAAAA+AGG - chr2_2:41943524-41943543 None:intergenic 20.0%
!! ATGGTGAACAAAATAAATAT+TGG - chr2_2:41943553-41943572 None:intergenic 20.0%
!! TGTTCCATAAAATATTCAAA+AGG - chr2_2:41943581-41943600 None:intergenic 20.0%
!!! GGATTGAAATTTTAAATGTT+AGG - chr2_2:41944046-41944065 None:intergenic 20.0%
!! TATAATAAATGCCAATTTCA+GGG - chr2_2:41944084-41944103 None:intergenic 20.0%
!! ATATAATAAATGCCAATTTC+AGG - chr2_2:41944085-41944104 None:intergenic 20.0%
!!! TTTTTAAAAATGAAAAGCAC+GGG + chr2_2:41944356-41944375 Msa0251710:intron 20.0%
!! GAAATAAGTAAAAATAGGTA+TGG - chr2_2:41944724-41944743 None:intergenic 20.0%
!!! TTTAAAAAAAATGAAGGTAC+AGG - chr2_2:41944923-41944942 None:intergenic 20.0%
!! GGCAAATTTAAAAAAAATGA+AGG - chr2_2:41944929-41944948 None:intergenic 20.0%
!!! TTGTATTATTTGTTATGTTG+AGG + chr2_2:41945255-41945274 Msa0251710:intron 20.0%
!!! TTTCCATTTTCAATATTACA+AGG + chr2_2:41945533-41945552 Msa0251710:three_prime_UTR 20.0%
! CCTAGAAAATATAGAGAATT+GGG - chr2_2:41939751-41939770 None:intergenic 25.0%
!! CCAATTCTCTATATTTTCTA+GGG + chr2_2:41939749-41939768 Msa0251710:five_prime_UTR 25.0%
!! TTTCTTTAAAAAGGGCTATT+GGG + chr2_2:41940031-41940050 Msa0251710:intron 25.0%
!! TTTAACTCTAAAGAAACACA+TGG - chr2_2:41940119-41940138 None:intergenic 25.0%
!!! TTCTTTAGAGTTAAATTGAG+TGG + chr2_2:41940124-41940143 Msa0251710:intron 25.0%
! GTGTATGTTGTGAATAATAA+TGG + chr2_2:41940201-41940220 Msa0251710:intron 25.0%
! TCTATGCAAGCATTATTATT+CGG - chr2_2:41940841-41940860 None:intergenic 25.0%
! ATTACAAAATCAAAAGAGAG+TGG - chr2_2:41941089-41941108 None:intergenic 25.0%
!!! TTTGTTTTAAGAAGTGTTTG+GGG + chr2_2:41941114-41941133 Msa0251710:intron 25.0%
! AGGTTGTTGAAATTGTTTAT+GGG + chr2_2:41941634-41941653 Msa0251710:intron 25.0%
! CTTCATTGAACATGAATTAT+GGG - chr2_2:41941784-41941803 None:intergenic 25.0%
! ACTTCATTGAACATGAATTA+TGG - chr2_2:41941785-41941804 None:intergenic 25.0%
! AGCTGATAGTATACATAAAT+AGG - chr2_2:41941881-41941900 None:intergenic 25.0%
! AAAGAAAAGTTATTGCATAC+CGG - chr2_2:41941928-41941947 None:intergenic 25.0%
! AGGCTATATGAAATTTCATT+AGG - chr2_2:41942014-41942033 None:intergenic 25.0%
! ATTTATGTCAAGTAATTTGG+TGG + chr2_2:41942391-41942410 Msa0251710:intron 25.0%
! ATATGAAAAATCATGCATGA+TGG - chr2_2:41942893-41942912 None:intergenic 25.0%
! AAAATATGAAACACTAACAC+TGG - chr2_2:41943437-41943456 None:intergenic 25.0%
!! TATAGAAATGACTTTTCACA+TGG + chr2_2:41943480-41943499 Msa0251710:intron 25.0%
!! CTCACCTTTTGAATATTTTA+TGG + chr2_2:41943574-41943593 Msa0251710:intron 25.0%
! TATAACACATACAGTTTCAA+TGG + chr2_2:41943731-41943750 Msa0251710:CDS 25.0%
!! ATTATGCTTCTTTTTATCGT+TGG + chr2_2:41943838-41943857 Msa0251710:CDS 25.0%
!!! TTTTATTTTATGTAGCCGAT+TGG + chr2_2:41944141-41944160 Msa0251710:intron 25.0%
!! AAAAGTCGAAAAAGTATAGT+TGG + chr2_2:41944471-41944490 Msa0251710:intron 25.0%
! AAGTAAAAATAGGTATGGTT+CGG - chr2_2:41944719-41944738 None:intergenic 25.0%
! ACGACGAAATAAGTAAAAAT+AGG - chr2_2:41944729-41944748 None:intergenic 25.0%
!! CATCAAAAGCAAGATAATTT+TGG - chr2_2:41944791-41944810 None:intergenic 25.0%
!! TTTTGATGAAAATAGTAGAG+AGG + chr2_2:41944803-41944822 Msa0251710:intron 25.0%
!! GTTCTTTTAAATGTGTTAAC+AGG + chr2_2:41945008-41945027 Msa0251710:intron 25.0%
!! GGATATATATTTTCTTTCAC+CGG + chr2_2:41945276-41945295 Msa0251710:intron 25.0%
!! GATATATATTTTCTTTCACC+GGG + chr2_2:41945277-41945296 Msa0251710:intron 25.0%
!! ATATATATTTTCTTTCACCG+GGG + chr2_2:41945278-41945297 Msa0251710:intron 25.0%
!!! ATTTTCGTTCTGAGATTTAA+AGG - chr2_2:41945334-41945353 None:intergenic 25.0%
! AAGAAAAATAGGTTAGGATT+AGG - chr2_2:41945418-41945437 None:intergenic 25.0%
! CAAAGAAAGAAAAATAGGTT+AGG - chr2_2:41945424-41945443 None:intergenic 25.0%
!!! ACCTATTTTTCTTTCTTTGT+AGG + chr2_2:41945425-41945444 Msa0251710:intron 25.0%
!! AAGCCTTGTAATATTGAAAA+TGG - chr2_2:41945539-41945558 None:intergenic 25.0%
!! ATTTTCAATATTACAAGGCT+TGG + chr2_2:41945538-41945557 Msa0251710:three_prime_UTR 25.0%
! TTGAAATGCTAAAAACATCA+AGG - chr2_2:41945798-41945817 None:intergenic 25.0%
! TGATTGAAGAAAGTTGACTT+GGG - chr2_2:41939705-41939724 None:intergenic 30.0%
! CCCAATTCTCTATATTTTCT+AGG + chr2_2:41939748-41939767 Msa0251710:five_prime_UTR 30.0%
CCCTAGAAAATATAGAGAAT+TGG - chr2_2:41939752-41939771 None:intergenic 30.0%
ATTCGATTCCGATTCATAAA+TGG + chr2_2:41939807-41939826 Msa0251710:exon 30.0%
ATTAAGAGGACATTACACTT+GGG - chr2_2:41939913-41939932 None:intergenic 30.0%
TGAAAAAGCCAAAAAGTAGA+AGG - chr2_2:41939945-41939964 None:intergenic 30.0%
! GTTTCTTTAAAAAGGGCTAT+TGG + chr2_2:41940030-41940049 Msa0251710:intron 30.0%
! TACGTGGTAAATAGTCATTT+TGG + chr2_2:41940525-41940544 Msa0251710:intron 30.0%
! TCGATTTGATCCATAAAGTT+AGG + chr2_2:41940765-41940784 Msa0251710:intron 30.0%
CGATTTGATCCATAAAGTTA+GGG + chr2_2:41940766-41940785 Msa0251710:intron 30.0%
CATTATAGTCCCTAACTTTA+TGG - chr2_2:41940778-41940797 None:intergenic 30.0%
AAAGTTAGGGACTATAATGA+TGG + chr2_2:41940779-41940798 Msa0251710:intron 30.0%
CTATGCAAGCATTATTATTC+GGG - chr2_2:41940840-41940859 None:intergenic 30.0%
TAGAACTAAACTACTCAAAC+AGG - chr2_2:41940868-41940887 None:intergenic 30.0%
!! TGAGTAGTTTAGTTCTATAC+CGG + chr2_2:41940871-41940890 Msa0251710:intron 30.0%
AATCAAAAGAGAGTGGAAAT+GGG - chr2_2:41941082-41941101 None:intergenic 30.0%
AAATCAAAAGAGAGTGGAAA+TGG - chr2_2:41941083-41941102 None:intergenic 30.0%
AATGAGCACATACTATCTAT+CGG - chr2_2:41941180-41941199 None:intergenic 30.0%
! TCAAATTGTTATTGATGCAG+CGG + chr2_2:41941411-41941430 Msa0251710:intron 30.0%
TACAGTTACAGATACATGTA+AGG + chr2_2:41941579-41941598 Msa0251710:intron 30.0%
AACAATTTCAACAACCTGAT+AGG - chr2_2:41941631-41941650 None:intergenic 30.0%
CAGGTTGTTGAAATTGTTTA+TGG + chr2_2:41941633-41941652 Msa0251710:intron 30.0%
! GGTATGCAATAACTTTTCTT+TGG + chr2_2:41941927-41941946 Msa0251710:intron 30.0%
ATAAGATAGATCCCAAAGAA+GGG - chr2_2:41942775-41942794 None:intergenic 30.0%
AATAAGATAGATCCCAAAGA+AGG - chr2_2:41942776-41942795 None:intergenic 30.0%
CGTCAAATTTGTATTGTTGA+CGG - chr2_2:41943100-41943119 None:intergenic 30.0%
CGTCAACAATACAAATTTGA+CGG + chr2_2:41943098-41943117 Msa0251710:CDS 30.0%
! TTCCAGAATGGTTCTATAAT+AGG + chr2_2:41943192-41943211 Msa0251710:CDS 30.0%
ACATCTTAATGAATCGATAC+CGG + chr2_2:41943221-41943240 Msa0251710:CDS 30.0%
ATAACACTGACACTTCAAAA+TGG + chr2_2:41943341-41943360 Msa0251710:intron 30.0%
AAATATTCAAAAGGTGAGCA+TGG - chr2_2:41943572-41943591 None:intergenic 30.0%
!! TAACTTCCTAAAAGTTGGTA+AGG - chr2_2:41943648-41943667 None:intergenic 30.0%
CCATATAACTTCCTAAAAGT+TGG - chr2_2:41943653-41943672 None:intergenic 30.0%
!! CCAACTTTTAGGAAGTTATA+TGG + chr2_2:41943650-41943669 Msa0251710:CDS 30.0%
! TTTCAAGTGTTACATCTATG+AGG - chr2_2:41943706-41943725 None:intergenic 30.0%
TGGCTTGACAAAATATACAA+TGG - chr2_2:41943870-41943889 None:intergenic 30.0%
! TTGTATATTTTGTCAAGCCA+AGG + chr2_2:41943870-41943889 Msa0251710:CDS 30.0%
CACATGGAACATTGTATATT+AGG + chr2_2:41944020-41944039 Msa0251710:intron 30.0%
TAATTTCAGAATCAGCCAAT+CGG - chr2_2:41944159-41944178 None:intergenic 30.0%
TAAAGGGAGCTTATAAAGAA+AGG - chr2_2:41944193-41944212 None:intergenic 30.0%
TTTGCTCATCATTCTATTGT+GGG - chr2_2:41944576-41944595 None:intergenic 30.0%
! TTTTGCTCATCATTCTATTG+TGG - chr2_2:41944577-41944596 None:intergenic 30.0%
TTTACTTATTTCGTCGTAGT+TGG + chr2_2:41944732-41944751 Msa0251710:intron 30.0%
AAAGGAGTTGAAAGAGTTAA+AGG - chr2_2:41945316-41945335 None:intergenic 30.0%
GCCTACAAAGAAAGAAAAAT+AGG - chr2_2:41945429-41945448 None:intergenic 30.0%
CTATTCCATGACAAATATGA+TGG - chr2_2:41945463-41945482 None:intergenic 30.0%
CATCATATTTGTCATGGAAT+AGG + chr2_2:41945461-41945480 Msa0251710:CDS 30.0%
ACATCTACTTAACTACTTAC+TGG + chr2_2:41945591-41945610 Msa0251710:three_prime_UTR 30.0%
! TGGTAACACTTGTGTATTTT+AGG + chr2_2:41945611-41945630 Msa0251710:three_prime_UTR 30.0%
GCATCAGAATTTAAATACAC+TGG + chr2_2:41945691-41945710 Msa0251710:three_prime_UTR 30.0%
GCTAAAAACATCAAGGAAAA+AGG - chr2_2:41945791-41945810 None:intergenic 30.0%
GTGATTGAAGAAAGTTGACT+TGG - chr2_2:41939706-41939725 None:intergenic 35.0%
!! GGTCGTTTTGTATTTCTTCT+TGG - chr2_2:41939892-41939911 None:intergenic 35.0%
GATTAAGAGGACATTACACT+TGG - chr2_2:41939914-41939933 None:intergenic 35.0%
!! TCTGTGATCCTTCTACTTTT+TGG + chr2_2:41939934-41939953 Msa0251710:intron 35.0%
CAAAAATGGGTCACTCAAAA+AGG - chr2_2:41939971-41939990 None:intergenic 35.0%
AGTGGATGTTGTGAAACAAA+GGG + chr2_2:41940142-41940161 Msa0251710:intron 35.0%
!! TATATGCCTTTAAGATGCGT+AGG + chr2_2:41940465-41940484 Msa0251710:intron 35.0%
!! ATATGCCTTTAAGATGCGTA+GGG + chr2_2:41940466-41940485 Msa0251710:intron 35.0%
!! TAGTCATTTTGGTCCTTAAG+TGG + chr2_2:41940536-41940555 Msa0251710:intron 35.0%
!! GAGTAGTTTAGTTCTATACC+GGG + chr2_2:41940872-41940891 Msa0251710:intron 35.0%
TATACCGGGAATAGTTGTAT+TGG + chr2_2:41940886-41940905 Msa0251710:intron 35.0%
AAAGTACGTGTTTGGCATTT+CGG - chr2_2:41941042-41941061 None:intergenic 35.0%
ATCAAAAGAGAGTGGAAATG+GGG - chr2_2:41941081-41941100 None:intergenic 35.0%
TTGGTTGTTTATTGACCAGA+TGG + chr2_2:41941143-41941162 Msa0251710:intron 35.0%
AAGAGTAATCTGAACTGACA+TGG + chr2_2:41941238-41941257 Msa0251710:intron 35.0%
AGTGTTGTGTTCATTCCTAT+CGG + chr2_2:41941492-41941511 Msa0251710:CDS 35.0%
GATAGGTACAAGAAAGTGAA+AGG - chr2_2:41941614-41941633 None:intergenic 35.0%
TTCACTTTCTTGTACCTATC+AGG + chr2_2:41941614-41941633 Msa0251710:intron 35.0%
! TTGCACGTTTTATCTGTTTC+AGG - chr2_2:41941717-41941736 None:intergenic 35.0%
GTTCAATGAAGTTCACATTG+CGG + chr2_2:41941793-41941812 Msa0251710:intron 35.0%
ACAAGAACACAGTTCAAGAA+AGG - chr2_2:41941831-41941850 None:intergenic 35.0%
TGAACTGTGTTCTTGTGAAA+AGG + chr2_2:41941835-41941854 Msa0251710:intron 35.0%
AATAGGTGATTTCATGTGCT+TGG - chr2_2:41941864-41941883 None:intergenic 35.0%
TCATATAGCCTATGTAAGAC+TGG + chr2_2:41942023-41942042 Msa0251710:intron 35.0%
AATTCTGTCCAAAGACAGTT+AGG - chr2_2:41942482-41942501 None:intergenic 35.0%
ATGAGCATTAAAAGGATGAG+AGG + chr2_2:41942512-41942531 Msa0251710:intron 35.0%
TGAGCATTAAAAGGATGAGA+GGG + chr2_2:41942513-41942532 Msa0251710:intron 35.0%
TTCATCTCTACTGAGTTAGT+AGG - chr2_2:41942591-41942610 None:intergenic 35.0%
CAAAAAAACGTTAGGTCTGT+GGG - chr2_2:41942663-41942682 None:intergenic 35.0%
TCAAAAAAACGTTAGGTCTG+TGG - chr2_2:41942664-41942683 None:intergenic 35.0%
!!! ACAGACCTAACGTTTTTTTG+AGG + chr2_2:41942663-41942682 Msa0251710:intron 35.0%
!!! CAGACCTAACGTTTTTTTGA+GGG + chr2_2:41942664-41942683 Msa0251710:intron 35.0%
AACTCCCTCAAAAAAACGTT+AGG - chr2_2:41942671-41942690 None:intergenic 35.0%
TAAGATAGATCCCAAAGAAG+GGG - chr2_2:41942774-41942793 None:intergenic 35.0%
CATGGAAATGCAAAGAGAAA+TGG - chr2_2:41942811-41942830 None:intergenic 35.0%
GCAAATACAAGATGAATGCA+TGG - chr2_2:41942829-41942848 None:intergenic 35.0%
! CTGTTATTTGCAGTATCTTC+AGG - chr2_2:41943018-41943037 None:intergenic 35.0%
CTGAAGATACTGCAAATAAC+AGG + chr2_2:41943016-41943035 Msa0251710:CDS 35.0%
AATTTGACGGTGAACAAGAA+AGG + chr2_2:41943111-41943130 Msa0251710:CDS 35.0%
TTTCCCAAAAACTTCCAGAA+TGG + chr2_2:41943180-41943199 Msa0251710:CDS 35.0%
!! GAACCATTCTGGAAGTTTTT+GGG - chr2_2:41943186-41943205 None:intergenic 35.0%
!! AGAACCATTCTGGAAGTTTT+TGG - chr2_2:41943187-41943206 None:intergenic 35.0%
CACCTATTATAGAACCATTC+TGG - chr2_2:41943197-41943216 None:intergenic 35.0%
! CAGAATGGTTCTATAATAGG+TGG + chr2_2:41943195-41943214 Msa0251710:CDS 35.0%
TATACTTGTCTCTCTTCACA+AGG + chr2_2:41943294-41943313 Msa0251710:intron 35.0%
! TTGAAGTGTCAGTGTTATAG+AGG - chr2_2:41943339-41943358 None:intergenic 35.0%
! TGAATTTGCGCTGTTTCAAA+AGG - chr2_2:41943938-41943957 None:intergenic 35.0%
TTGCTGCATAAATTAGCACA+TGG + chr2_2:41944004-41944023 Msa0251710:intron 35.0%
TGCCAATTTCAGGGTTAAAA+CGG - chr2_2:41944075-41944094 None:intergenic 35.0%
AAATTACCGTATTCTCGTAC+CGG - chr2_2:41944339-41944358 None:intergenic 35.0%
TCTATTGTGGGTGAAAATTG+TGG - chr2_2:41944564-41944583 None:intergenic 35.0%
! AAAATATGAAGTACCCGTAC+CGG - chr2_2:41944608-41944627 None:intergenic 35.0%
AAATTTGCCGTATTACGTAC+CGG + chr2_2:41944940-41944959 Msa0251710:intron 35.0%
AGTTGAAAGAGTTAAAGGAC+CGG - chr2_2:41945311-41945330 None:intergenic 35.0%
TTCAAAACAACCACTTCTAG+TGG - chr2_2:41945380-41945399 None:intergenic 35.0%
TTCTTTCTTTGTAGGCAACT+TGG + chr2_2:41945433-41945452 Msa0251710:intron 35.0%
GAGATCCATCATATTTGTCA+TGG + chr2_2:41945455-41945474 Msa0251710:CDS 35.0%
ACTGGTATGTTATAATCTCG+TGG + chr2_2:41945709-41945728 Msa0251710:three_prime_UTR 35.0%
GAGATGATTGAGTATACACA+TGG - chr2_2:41945762-41945781 None:intergenic 35.0%
GGAAGACGCCATTTATGAAT+CGG - chr2_2:41939818-41939837 None:intergenic 40.0%
TGTATTTCTTCTTGGAGCAG+TGG - chr2_2:41939884-41939903 None:intergenic 40.0%
GAAGGATCACAGAGATTAAG+AGG - chr2_2:41939927-41939946 None:intergenic 40.0%
GAGTGGATGTTGTGAAACAA+AGG + chr2_2:41940141-41940160 Msa0251710:intron 40.0%
ATGTTCCTGTCAGAATTAGC+CGG + chr2_2:41940226-41940245 Msa0251710:intron 40.0%
TTTAACCACTTCTCGAATGC+AGG + chr2_2:41940259-41940278 Msa0251710:intron 40.0%
TTAACCACTTCTCGAATGCA+GGG + chr2_2:41940260-41940279 Msa0251710:intron 40.0%
!! TATGCCTTTAAGATGCGTAG+GGG + chr2_2:41940467-41940486 Msa0251710:intron 40.0%
AATTCCCCTACGCATCTTAA+AGG - chr2_2:41940474-41940493 None:intergenic 40.0%
! TTTAAGATGCGTAGGGGAAT+TGG + chr2_2:41940473-41940492 Msa0251710:intron 40.0%
TTAAGATGCGTAGGGGAATT+GGG + chr2_2:41940474-41940493 Msa0251710:intron 40.0%
! ATGGATTTTGGACCATGACT+CGG - chr2_2:41940500-41940519 None:intergenic 40.0%
TCATGGTCCAAAATCCATAC+TGG + chr2_2:41940502-41940521 Msa0251710:intron 40.0%
CTATTTACCACGTACCAGTA+TGG - chr2_2:41940519-41940538 None:intergenic 40.0%
AAGCCATATTCCACTAAGTG+GGG - chr2_2:41940711-41940730 None:intergenic 40.0%
CAAGCCATATTCCACTAAGT+GGG - chr2_2:41940712-41940731 None:intergenic 40.0%
GTCACCAATACAACTATTCC+CGG - chr2_2:41940893-41940912 None:intergenic 40.0%
!!! TCACAGTGTGATGCTGATTT+TGG + chr2_2:41940928-41940947 Msa0251710:intron 40.0%
CGCTACTTAAAGTACGTGTT+TGG - chr2_2:41941050-41941069 None:intergenic 40.0%
TAATTTAAGTGTCTCCCTGC+AGG + chr2_2:41941446-41941465 Msa0251710:intron 40.0%
TTCGCTAATGGCTTCAAGAA+AGG + chr2_2:41941521-41941540 Msa0251710:CDS 40.0%
! ACTTTTACCAGAATCATCGC+CGG + chr2_2:41941906-41941925 Msa0251710:CDS 40.0%
!!! ATTTTTGGGTTGCTTGCTCT+GGG - chr2_2:41942064-41942083 None:intergenic 40.0%
! ATTTGGTGGAGTTGAACAAG+TGG + chr2_2:41942405-41942424 Msa0251710:intron 40.0%
CTCATATGCCTAACTGTCTT+TGG + chr2_2:41942471-41942490 Msa0251710:intron 40.0%
ATTAAAAGGATGAGAGGGAG+TGG + chr2_2:41942518-41942537 Msa0251710:intron 40.0%
ACTCAGTAGAGATGAACACA+TGG + chr2_2:41942595-41942614 Msa0251710:intron 40.0%
TGAGGGAGTTGTAGAATTAG+AGG + chr2_2:41942681-41942700 Msa0251710:intron 40.0%
GAGGGAGTTGTAGAATTAGA+GGG + chr2_2:41942682-41942701 Msa0251710:intron 40.0%
AGGGAGTTGTAGAATTAGAG+GGG + chr2_2:41942683-41942702 Msa0251710:intron 40.0%
AGAATTAGAGGGGAGATGAA+AGG + chr2_2:41942693-41942712 Msa0251710:intron 40.0%
GGATCTATCTTATTCCTCTC+TGG + chr2_2:41942782-41942801 Msa0251710:intron 40.0%
AACAGGTCAATTGTACCTTG+TGG + chr2_2:41943033-41943052 Msa0251710:CDS 40.0%
! AGTGATAGGGAGCACAAATT+TGG + chr2_2:41943147-41943166 Msa0251710:CDS 40.0%
GACATCATGAAGCTACTTAC+CGG - chr2_2:41943243-41943262 None:intergenic 40.0%
TATGGAACAGTTGAATGAGC+AGG + chr2_2:41943592-41943611 Msa0251710:intron 40.0%
ATTGCTTATCTCACTGTTGG+AGG + chr2_2:41943815-41943834 Msa0251710:CDS 40.0%
!! ACCCGTTTTAACCCTGAAAT+TGG + chr2_2:41944070-41944089 Msa0251710:intron 40.0%
GCCAATTTCAGGGTTAAAAC+GGG - chr2_2:41944074-41944093 None:intergenic 40.0%
AGGTCTATGTTGGATAGGTA+TGG + chr2_2:41944287-41944306 Msa0251710:intron 40.0%
GGTCTATGTTGGATAGGTAT+GGG + chr2_2:41944288-41944307 Msa0251710:intron 40.0%
ATGTTGGATAGGTATGGGTA+CGG + chr2_2:41944293-41944312 Msa0251710:intron 40.0%
GATGAGCAAAAATGCATACC+CGG + chr2_2:41944586-41944605 Msa0251710:intron 40.0%
! AAATATGAAGTACCCGTACC+GGG - chr2_2:41944607-41944626 None:intergenic 40.0%
!! TACCCAATTCTCTGAAGCAT+GGG + chr2_2:41944634-41944653 Msa0251710:intron 40.0%
TACCCATGCTTCAGAGAATT+GGG - chr2_2:41944639-41944658 None:intergenic 40.0%
AAGCATGGGTACTTCAAACA+TGG + chr2_2:41944648-41944667 Msa0251710:intron 40.0%
! CTTCAAACATGGAGAAGTAC+CGG + chr2_2:41944659-41944678 Msa0251710:intron 40.0%
! AAATGAAGGTACAGGTACGT+TGG - chr2_2:41944915-41944934 None:intergenic 40.0%
TACCTATGATGCATAGGTAC+GGG - chr2_2:41944968-41944987 None:intergenic 40.0%
GTACCTATGATGCATAGGTA+CGG - chr2_2:41944969-41944988 None:intergenic 40.0%
GTTGAAAGAGTTAAAGGACC+GGG - chr2_2:41945310-41945329 None:intergenic 40.0%
!! TTTTGTTTACTGCCCTCCTT+GGG - chr2_2:41945488-41945507 None:intergenic 40.0%
!! TTTTTGTTTACTGCCCTCCT+TGG - chr2_2:41945489-41945508 None:intergenic 40.0%
! AAGGCTTGGTTATTCTACAG+TGG + chr2_2:41945552-41945571 Msa0251710:three_prime_UTR 40.0%
!! AGAGAGGGAGTATTTGTTTC+AGG - chr2_2:41945739-41945758 None:intergenic 40.0%
TGAGTATACACATGGAGAGA+GGG - chr2_2:41945754-41945773 None:intergenic 40.0%
TTGAGTATACACATGGAGAG+AGG - chr2_2:41945755-41945774 None:intergenic 40.0%
!! GAAAGTTGACTTGGGCAGTT+TGG - chr2_2:41939697-41939716 None:intergenic 45.0%
TGTTCCTGTCAGAATTAGCC+GGG + chr2_2:41940227-41940246 Msa0251710:intron 45.0%
GTGGTTAAACCTACATACCC+CGG - chr2_2:41940248-41940267 None:intergenic 45.0%
ATGGGCAAATACCCAAGCAT+GGG - chr2_2:41940318-41940337 None:intergenic 45.0%
AATTAGGGCTTGGATACTGC+GGG - chr2_2:41940350-41940369 None:intergenic 45.0%
CAATTAGGGCTTGGATACTG+CGG - chr2_2:41940351-41940370 None:intergenic 45.0%
TATCCAAGCCCTAATTGCTC+TGG + chr2_2:41940354-41940373 Msa0251710:intron 45.0%
TGACTCAGCCAGAGCAATTA+GGG - chr2_2:41940365-41940384 None:intergenic 45.0%
ACCAGAGCTGTACATGACTA+GGG + chr2_2:41940397-41940416 Msa0251710:intron 45.0%
! CCACGTACCAGTATGGATTT+TGG - chr2_2:41940512-41940531 None:intergenic 45.0%
CCAAAATCCATACTGGTACG+TGG + chr2_2:41940509-41940528 Msa0251710:intron 45.0%
TTAAGTGGTGTGAGTGGTTG+CGG + chr2_2:41940551-41940570 Msa0251710:intron 45.0%
CATATTCCACTAAGTGGGGT+CGG - chr2_2:41940707-41940726 None:intergenic 45.0%
CCAAGCCATATTCCACTAAG+TGG - chr2_2:41940713-41940732 None:intergenic 45.0%
CCACTTAGTGGAATATGGCT+TGG + chr2_2:41940710-41940729 Msa0251710:intron 45.0%
! CTTAGTGGAATATGGCTTGG+TGG + chr2_2:41940713-41940732 Msa0251710:intron 45.0%
! TGATGGTGCCTCACATGTTT+AGG + chr2_2:41940796-41940815 Msa0251710:intron 45.0%
GATGGTGCCTCACATGTTTA+GGG + chr2_2:41940797-41940816 Msa0251710:intron 45.0%
TTCTGGTCCCTAAACATGTG+AGG - chr2_2:41940807-41940826 None:intergenic 45.0%
CACATGTTTAGGGACCAGAA+TGG + chr2_2:41940807-41940826 Msa0251710:intron 45.0%
ATTCGGGCAAATCACCATTC+TGG - chr2_2:41940824-41940843 None:intergenic 45.0%
CGGTGAGTTCGACAAAATCA+CGG - chr2_2:41941022-41941041 None:intergenic 45.0%
AAAAGAGAGTGGAAATGGGG+TGG - chr2_2:41941078-41941097 None:intergenic 45.0%
! GAAGTGTTTGGGGTGCATAT+TGG + chr2_2:41941124-41941143 Msa0251710:intron 45.0%
GTAAGAATAGGCTTGCAAGC+TGG - chr2_2:41941317-41941336 None:intergenic 45.0%
TGTCTCCCTGCAGGTTATTT+CGG + chr2_2:41941455-41941474 Msa0251710:intron 45.0%
GAATGCCGAAATAACCTGCA+GGG - chr2_2:41941463-41941482 None:intergenic 45.0%
AGAATGCCGAAATAACCTGC+AGG - chr2_2:41941464-41941483 None:intergenic 45.0%
ATTAGCGAAGCAACTCCGAT+AGG - chr2_2:41941510-41941529 None:intergenic 45.0%
TATCGGAGTTGCTTCGCTAA+TGG + chr2_2:41941509-41941528 Msa0251710:CDS 45.0%
GTATGAGTCAGACTGCTTAC+CGG + chr2_2:41941656-41941675 Msa0251710:CDS 45.0%
ATTATGGGACAGAGCTAGAC+TGG - chr2_2:41941769-41941788 None:intergenic 45.0%
CTGGGATTCCAGTCTTACAT+AGG - chr2_2:41942034-41942053 None:intergenic 45.0%
TGTAAGACTGGAATCCCAGA+TGG + chr2_2:41942035-41942054 Msa0251710:intron 45.0%
!!! CATTTTTGGGTTGCTTGCTC+TGG - chr2_2:41942065-41942084 None:intergenic 45.0%
AATGTACCAAAGGTCTGTGC+AGG + chr2_2:41942438-41942457 Msa0251710:intron 45.0%
TAGAGGGGAGATGAAAGGAT+AGG + chr2_2:41942698-41942717 Msa0251710:intron 45.0%
TAGATCCCAAAGAAGGGGAA+AGG - chr2_2:41942769-41942788 None:intergenic 45.0%
AAGAGAAATGGAGTCCAGAG+AGG - chr2_2:41942799-41942818 None:intergenic 45.0%
GTCGAAGTGATGAGCAATTG+AGG + chr2_2:41942956-41942975 Msa0251710:CDS 45.0%
TGAGCAATTGAGGAGTCCTA+AGG + chr2_2:41942966-41942985 Msa0251710:CDS 45.0%
GAGCAATTGAGGAGTCCTAA+GGG + chr2_2:41942967-41942986 Msa0251710:CDS 45.0%
CTTACTGAGTTCTCTCCCTT+AGG - chr2_2:41942985-41943004 None:intergenic 45.0%
TACCTTGTGGTCTCATAGCT+TGG + chr2_2:41943046-41943065 Msa0251710:CDS 45.0%
!! TGAACAAGAAAGGCATCTCC+TGG + chr2_2:41943121-41943140 Msa0251710:CDS 45.0%
CATCTCCTGGAAGAGTGATA+GGG + chr2_2:41943134-41943153 Msa0251710:CDS 45.0%
AGCAGGAGGATCTTATTGTC+TGG + chr2_2:41943609-41943628 Msa0251710:CDS 45.0%
!! CCTAAAAGTTGGTAAGGCAG+CGG - chr2_2:41943642-41943661 None:intergenic 45.0%
TCGTACTGTCTACTACTAGC+TGG + chr2_2:41943765-41943784 Msa0251710:CDS 45.0%
GGTGGGAAGAATGATTTCCT+TGG + chr2_2:41943791-41943810 Msa0251710:CDS 45.0%
CAGTGAGATAAGCAATGCCA+AGG - chr2_2:41943811-41943830 None:intergenic 45.0%
GGCATTGCTTATCTCACTGT+TGG + chr2_2:41943812-41943831 Msa0251710:CDS 45.0%
GAGAATGCAAGTACGTACCT+TGG - chr2_2:41943890-41943909 None:intergenic 45.0%
TCAGGGTTAAAACGGGTGAA+TGG - chr2_2:41944067-41944086 None:intergenic 45.0%
CAGACTGCAGACTCACTAAA+GGG - chr2_2:41944209-41944228 None:intergenic 45.0%
AGTTCCTGTGAGGTCTATGT+TGG + chr2_2:41944277-41944296 Msa0251710:intron 45.0%
CTATCCAACATAGACCTCAC+AGG - chr2_2:41944284-41944303 None:intergenic 45.0%
CTGTGAGGTCTATGTTGGAT+AGG + chr2_2:41944282-41944301 Msa0251710:intron 45.0%
TACGGTACCCAGTACGATAT+GGG + chr2_2:41944311-41944330 Msa0251710:intron 45.0%
GCAAAAATGCATACCCGGTA+CGG + chr2_2:41944591-41944610 Msa0251710:intron 45.0%
CAAAAATGCATACCCGGTAC+GGG + chr2_2:41944592-41944611 Msa0251710:intron 45.0%
!! GTACCCAATTCTCTGAAGCA+TGG + chr2_2:41944633-41944652 Msa0251710:intron 45.0%
GTACCCATGCTTCAGAGAAT+TGG - chr2_2:41944640-41944659 None:intergenic 45.0%
GTTGGTGCAGCAAAAACGTA+CGG + chr2_2:41944750-41944769 Msa0251710:intron 45.0%
TTGGTGCAGCAAAAACGTAC+GGG + chr2_2:41944751-41944770 Msa0251710:intron 45.0%
TACCCGTACCTATGCATCAT+AGG + chr2_2:41944963-41944982 Msa0251710:intron 45.0%
CATGGGTACCTATGATGCAT+AGG - chr2_2:41944974-41944993 None:intergenic 45.0%
CAGCCGTTGTATGAATCCAA+TGG + chr2_2:41945094-41945113 Msa0251710:intron 45.0%
CGGCCATTGGATTCATACAA+CGG - chr2_2:41945100-41945119 None:intergenic 45.0%
ATTGGCAGTCAAGGCAAGAA+AGG + chr2_2:41945132-41945151 Msa0251710:intron 45.0%
TCTTCAACAGCCACTAGAAG+TGG + chr2_2:41945367-41945386 Msa0251710:intron 45.0%
TTGTCATGGAATAGGACCCA+AGG + chr2_2:41945469-41945488 Msa0251710:CDS 45.0%
CTTGGTTATTCTACAGTGGC+AGG + chr2_2:41945556-41945575 Msa0251710:three_prime_UTR 45.0%
!! AATTATTACAAATATATAAA+GGG - chr2_2:41942867-41942886 None:intergenic 5.0%
!! ATAAAATTTAAATTATACAA+TGG - chr2_2:41945195-41945214 None:intergenic 5.0%
!!! AATTTTATATTTATTGATTT+AGG + chr2_2:41945876-41945895 Msa0251710:three_prime_UTR 5.0%
GTTCCTGTCAGAATTAGCCG+GGG + chr2_2:41940228-41940247 Msa0251710:intron 50.0%
ATACCCCGGCTAATTCTGAC+AGG - chr2_2:41940234-41940253 None:intergenic 50.0%
CAGAATTAGCCGGGGTATGT+AGG + chr2_2:41940236-41940255 Msa0251710:intron 50.0%
AAATACCCAAGCATGGGACC+CGG - chr2_2:41940312-41940331 None:intergenic 50.0%
CATGGGCAAATACCCAAGCA+TGG - chr2_2:41940319-41940338 None:intergenic 50.0%
TACTGCGGGACTAACTGCAT+GGG - chr2_2:41940336-41940355 None:intergenic 50.0%
ATACTGCGGGACTAACTGCA+TGG - chr2_2:41940337-41940356 None:intergenic 50.0%
CTGACTCAGCCAGAGCAATT+AGG - chr2_2:41940366-41940385 None:intergenic 50.0%
GACCAGAGCTGTACATGACT+AGG + chr2_2:41940396-41940415 Msa0251710:intron 50.0%
CCAGAGCTGTACATGACTAG+GGG + chr2_2:41940398-41940417 Msa0251710:intron 50.0%
CAGAGCTGTACATGACTAGG+GGG + chr2_2:41940399-41940418 Msa0251710:intron 50.0%
AGAGCTGTACATGACTAGGG+GGG + chr2_2:41940400-41940419 Msa0251710:intron 50.0%
GGACGTGAGCATACTATGCT+CGG + chr2_2:41940421-41940440 Msa0251710:intron 50.0%
AGCATACTATGCTCGGATGC+TGG + chr2_2:41940428-41940447 Msa0251710:intron 50.0%
TGGTCCTTAAGTGGTGTGAG+TGG + chr2_2:41940545-41940564 Msa0251710:intron 50.0%
GCAACCACTCACACCACTTA+AGG - chr2_2:41940552-41940571 None:intergenic 50.0%
CGACCCCACTTAGTGGAATA+TGG + chr2_2:41940705-41940724 Msa0251710:intron 50.0%
TCGGCATACAACTCTCCATC+TGG - chr2_2:41941161-41941180 None:intergenic 50.0%
GCCTATTCTTACACCTCGAG+CGG + chr2_2:41941325-41941344 Msa0251710:CDS 50.0%
ACCGCTCGAGGTGTAAGAAT+AGG - chr2_2:41941329-41941348 None:intergenic 50.0%
TCTAGTAGTGTTACCGCTCG+AGG - chr2_2:41941341-41941360 None:intergenic 50.0%
ACCTCGTCTTTAGTGCCATC+CGG - chr2_2:41941678-41941697 None:intergenic 50.0%
! ACAGAGCTAGACTGGTGTCA+AGG - chr2_2:41941761-41941780 None:intergenic 50.0%
TTGCATACCGGCGATGATTC+TGG - chr2_2:41941916-41941935 None:intergenic 50.0%
AAGACTGGAATCCCAGATGG+TGG + chr2_2:41942038-41942057 Msa0251710:intron 50.0%
AGTTGAACAAGTGGCCTGGA+GGG + chr2_2:41942414-41942433 Msa0251710:intron 50.0%
CCTTTGGTACATTTCCCTCC+AGG - chr2_2:41942431-41942450 None:intergenic 50.0%
CCTGGAGGGAAATGTACCAA+AGG + chr2_2:41942428-41942447 Msa0251710:intron 50.0%
GTAGAGATGAACACATGGCC+TGG + chr2_2:41942600-41942619 Msa0251710:intron 50.0%
CACCTTACATACCATGCTCC+AGG - chr2_2:41942621-41942640 None:intergenic 50.0%
AACGTTAGGTCTGTGGGACT+TGG - chr2_2:41942657-41942676 None:intergenic 50.0%
AGGGGAGATGAAAGGATAGG+AGG + chr2_2:41942701-41942720 Msa0251710:intron 50.0%
TCCCTCCTTTCCCCTTCTTT+GGG + chr2_2:41942761-41942780 Msa0251710:intron 50.0%
TCCCAAAGAAGGGGAAAGGA+GGG - chr2_2:41942765-41942784 None:intergenic 50.0%
ATCCCAAAGAAGGGGAAAGG+AGG - chr2_2:41942766-41942785 None:intergenic 50.0%
CTCCAAGCTATGAGACCACA+AGG - chr2_2:41943051-41943070 None:intergenic 50.0%
GCATCTCCTGGAAGAGTGAT+AGG + chr2_2:41943133-41943152 Msa0251710:CDS 50.0%
GGAACAGTTGAATGAGCAGG+AGG + chr2_2:41943595-41943614 Msa0251710:intron 50.0%
! CCGCTGCCTTACCAACTTTT+AGG + chr2_2:41943639-41943658 Msa0251710:CDS 50.0%
CTGTCTACTACTAGCTGGCT+TGG + chr2_2:41943770-41943789 Msa0251710:CDS 50.0%
!! TCTACTACTAGCTGGCTTGG+TGG + chr2_2:41943773-41943792 Msa0251710:CDS 50.0%
!! CTACTACTAGCTGGCTTGGT+GGG + chr2_2:41943774-41943793 Msa0251710:CDS 50.0%
GCAGACTGCAGACTCACTAA+AGG - chr2_2:41944210-41944229 None:intergenic 50.0%
TGTGGCTTGAAGTTCCTGTG+AGG + chr2_2:41944267-41944286 Msa0251710:intron 50.0%
GTACGGTACCCAGTACGATA+TGG + chr2_2:41944310-41944329 Msa0251710:intron 50.0%
ACCCAGTACGATATGGGTAC+CGG + chr2_2:41944317-41944336 Msa0251710:intron 50.0%
ACCGGTACCCATATCGTACT+GGG - chr2_2:41944321-41944340 None:intergenic 50.0%
TACCGGTACCCATATCGTAC+TGG - chr2_2:41944322-41944341 None:intergenic 50.0%
!! TGGGTACCGGTACGAGAATA+CGG + chr2_2:41944330-41944349 Msa0251710:intron 50.0%
!! ACATGGAGAAGTACCGGTAC+CGG + chr2_2:41944665-41944684 Msa0251710:intron 50.0%
ATGAGTACCATACGCGTAGC+CGG - chr2_2:41944687-41944706 None:intergenic 50.0%
!! ACGGGTACCGGTACGTAATA+CGG - chr2_2:41944950-41944969 None:intergenic 50.0%
TGATGCATAGGTACGGGTAC+CGG - chr2_2:41944962-41944981 None:intergenic 50.0%
GTACCCATGCTTCAGAGTGT+GGG + chr2_2:41944985-41945004 Msa0251710:intron 50.0%
TACCCATGCTTCAGAGTGTG+GGG + chr2_2:41944986-41945005 Msa0251710:intron 50.0%
!! AACCCCACACTCTGAAGCAT+GGG - chr2_2:41944991-41945010 None:intergenic 50.0%
TCATGGAATAGGACCCAAGG+AGG + chr2_2:41945472-41945491 Msa0251710:CDS 50.0%
CATGGAATAGGACCCAAGGA+GGG + chr2_2:41945473-41945492 Msa0251710:CDS 50.0%
GCAGTGGAATCAGCAGATCC+AGG - chr2_2:41939868-41939887 None:intergenic 55.0%
ACCACTTCTCGAATGCAGGG+AGG + chr2_2:41940263-41940282 Msa0251710:intron 55.0%
TCGAATGCAGGGAGGCAGAT+GGG + chr2_2:41940271-41940290 Msa0251710:intron 55.0%
CAGATGGGGATTAGGCTGGT+GGG + chr2_2:41940286-41940305 Msa0251710:intron 55.0%
CAGCCAGAGCAATTAGGGCT+TGG - chr2_2:41940360-41940379 None:intergenic 55.0%
CCCCTAGTCATGTACAGCTC+TGG - chr2_2:41940401-41940420 None:intergenic 55.0%
CGGATGCTGGTCATGCAGTT+TGG + chr2_2:41940441-41940460 Msa0251710:intron 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr2_2:41940699-41940718 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr2_2:41940698-41940717 Msa0251710:intron 55.0%
GAGTCAGACTGCTTACCGGA+TGG + chr2_2:41941660-41941679 Msa0251710:CDS 55.0%
ACCGGATGGCACTAAAGACG+AGG + chr2_2:41941674-41941693 Msa0251710:CDS 55.0%
GTGGAGTTGAACAAGTGGCC+TGG + chr2_2:41942410-41942429 Msa0251710:intron 55.0%
GAGTTGAACAAGTGGCCTGG+AGG + chr2_2:41942413-41942432 Msa0251710:intron 55.0%
ACTGCTCCTGCACAGACCTT+TGG - chr2_2:41942447-41942466 None:intergenic 55.0%
AAGGTCTGTGCAGGAGCAGT+AGG + chr2_2:41942447-41942466 Msa0251710:intron 55.0%
TGAACACATGGCCTGGAGCA+TGG + chr2_2:41942607-41942626 Msa0251710:intron 55.0%
GGCCTGGAGCATGGTATGTA+AGG + chr2_2:41942616-41942635 Msa0251710:intron 55.0%
CTCCCTCCTTTCCCCTTCTT+TGG + chr2_2:41942760-41942779 Msa0251710:intron 55.0%
GTGCTCCCTATCACTCTTCC+AGG - chr2_2:41943142-41943161 None:intergenic 55.0%
GGTACCCATGCTTCAGAGTG+TGG + chr2_2:41944984-41945003 Msa0251710:intron 55.0%
!! GAACCCCACACTCTGAAGCA+TGG - chr2_2:41944992-41945011 None:intergenic 55.0%
CTGCATCAGTCTGCAGATGC+AGG - chr2_2:41945056-41945075 None:intergenic 55.0%
TGAATCCAATGGCCGACCTC+TGG + chr2_2:41945105-41945124 Msa0251710:intron 55.0%
TTGACTGCCAATGCAGCCAG+AGG - chr2_2:41945124-41945143 None:intergenic 55.0%
! TCTGGCTGCATTGGCAGTCA+AGG + chr2_2:41945123-41945142 Msa0251710:intron 55.0%
CTTTCACCGGGGTTTGAACC+CGG + chr2_2:41945289-41945308 Msa0251710:intron 55.0%
AAAGGACCGGGTTCAAACCC+CGG - chr2_2:41945298-41945317 None:intergenic 55.0%
GCCTCCCTGCATTCGAGAAG+TGG - chr2_2:41940267-41940286 None:intergenic 60.0%
CTCGAATGCAGGGAGGCAGA+TGG + chr2_2:41940270-41940289 Msa0251710:intron 60.0%
CGAATGCAGGGAGGCAGATG+GGG + chr2_2:41940272-41940291 Msa0251710:intron 60.0%
CAGGGAGGCAGATGGGGATT+AGG + chr2_2:41940278-41940297 Msa0251710:intron 60.0%
GAGGCAGATGGGGATTAGGC+TGG + chr2_2:41940282-41940301 Msa0251710:intron 60.0%
GCAGATGGGGATTAGGCTGG+TGG + chr2_2:41940285-41940304 Msa0251710:intron 60.0%
AGGGGAATTGGGCCGAGTCA+TGG + chr2_2:41940485-41940504 Msa0251710:intron 60.0%
! CTTGCTCTGGGCCACCATCT+GGG - chr2_2:41942052-41942071 None:intergenic 60.0%
ACCATACGCGTAGCCGGTAC+CGG - chr2_2:41944681-41944700 None:intergenic 60.0%
CTGCCAATGCAGCCAGAGGT+CGG - chr2_2:41945120-41945139 None:intergenic 60.0%
GCAGCAGCAGCAGAAGCTCC+TGG + chr2_2:41939847-41939866 Msa0251710:CDS 65.0%
! TGGGGATTAGGCTGGTGGGC+CGG + chr2_2:41940290-41940309 Msa0251710:intron 65.0%
! GCTTGCTCTGGGCCACCATC+TGG - chr2_2:41942053-41942072 None:intergenic 65.0%
!! ACCGGTACCGGCTACGCGTA+TGG + chr2_2:41944677-41944696 Msa0251710:intron 65.0%
TGCAGCCAGAGGTCGGCCAT+TGG - chr2_2:41945113-41945132 None:intergenic 65.0%
TGGCCGACCTCTGGCTGCAT+TGG + chr2_2:41945114-41945133 Msa0251710:intron 65.0%
TGCTGCTGCTGCTGCTGCGC+TGG - chr2_2:41939839-41939858 None:intergenic 70.0%
! GGGGATTAGGCTGGTGGGCC+GGG + chr2_2:41940291-41940310 Msa0251710:intron 70.0%
GTGGGCCGGGTCCCATGCTT+GGG + chr2_2:41940304-41940323 Msa0251710:intron 70.0%
GGTGGGCCGGGTCCCATGCT+TGG + chr2_2:41940303-41940322 Msa0251710:intron 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 41939682 41945900 41939682 ID=Msa0251710;Name=Msa0251710
chr2_2 mRNA 41939682 41945900 41939682 ID=Msa0251710-mRNA-1;Parent=Msa0251710;Name=Msa0251710-mRNA-1;_AED=0.05;_eAED=0.05;_QI=144|1|1|1|0.85|0.87|8|399|350
chr2_2 exon 41939682 41939916 41939682 ID=Msa0251710-mRNA-1:exon:13079;Parent=Msa0251710-mRNA-1
chr2_2 exon 41941288 41941346 41941288 ID=Msa0251710-mRNA-1:exon:13080;Parent=Msa0251710-mRNA-1
chr2_2 exon 41941468 41941542 41941468 ID=Msa0251710-mRNA-1:exon:13081;Parent=Msa0251710-mRNA-1
chr2_2 exon 41941636 41941749 41941636 ID=Msa0251710-mRNA-1:exon:13082;Parent=Msa0251710-mRNA-1
chr2_2 exon 41941857 41941927 41941857 ID=Msa0251710-mRNA-1:exon:13083;Parent=Msa0251710-mRNA-1
chr2_2 exon 41942945 41943242 41942945 ID=Msa0251710-mRNA-1:exon:13084;Parent=Msa0251710-mRNA-1
chr2_2 exon 41943602 41943891 41943602 ID=Msa0251710-mRNA-1:exon:13085;Parent=Msa0251710-mRNA-1
chr2_2 exon 41945447 41945900 41945447 ID=Msa0251710-mRNA-1:exon:13086;Parent=Msa0251710-mRNA-1
chr2_2 five_prime_UTR 41939682 41939825 41939682 ID=Msa0251710-mRNA-1:five_prime_utr;Parent=Msa0251710-mRNA-1
chr2_2 CDS 41939826 41939916 41939826 ID=Msa0251710-mRNA-1:cds;Parent=Msa0251710-mRNA-1
chr2_2 CDS 41941288 41941346 41941288 ID=Msa0251710-mRNA-1:cds;Parent=Msa0251710-mRNA-1
chr2_2 CDS 41941468 41941542 41941468 ID=Msa0251710-mRNA-1:cds;Parent=Msa0251710-mRNA-1
chr2_2 CDS 41941636 41941749 41941636 ID=Msa0251710-mRNA-1:cds;Parent=Msa0251710-mRNA-1
chr2_2 CDS 41941857 41941927 41941857 ID=Msa0251710-mRNA-1:cds;Parent=Msa0251710-mRNA-1
chr2_2 CDS 41942945 41943242 41942945 ID=Msa0251710-mRNA-1:cds;Parent=Msa0251710-mRNA-1
chr2_2 CDS 41943602 41943891 41943602 ID=Msa0251710-mRNA-1:cds;Parent=Msa0251710-mRNA-1
chr2_2 CDS 41945447 41945501 41945447 ID=Msa0251710-mRNA-1:cds;Parent=Msa0251710-mRNA-1
chr2_2 three_prime_UTR 41945502 41945900 41945502 ID=Msa0251710-mRNA-1:three_prime_utr;Parent=Msa0251710-mRNA-1
Gene Sequence

>Msa0251710

ATGGCGTCTTCCAGCGCAGCAGCAGCAGCAGCAGAAGCTCCTGGATCTGCTGATTCCACTGCTCCAAGAAGAAATACAAAACGACCCAAGTATTCAAAGTTTACTCAGCAAGAACTTCCAGCTTGCAAGCCTATTCTTACACCTCGAGCGGTTATTTCGGCATTCTTGCTTGTCAGTGTTGTGTTCATTCCTATCGGAGTTGCTTCGCTAATGGCTTCAAGAAAGGTTGTTGAAATTGTTTATGGGTATGAGTCAGACTGCTTACCGGATGGCACTAAAGACGAGGTAGCATTCATTCAGAGTCCTGAAACAGATAAAACGTGCAACATAACACTGAATGTGACCAAGCACATGAAATCACCTATTTATGTATACTATCAGCTTGACAACTTTTACCAGAATCATCGCCGGTATGTTAAAAGTCGAAGTGATGAGCAATTGAGGAGTCCTAAGGGAGAGAACTCAGTAAGTGCTTGTAAGCCTGAAGATACTGCAAATAACAGGTCAATTGTACCTTGTGGTCTCATAGCTTGGAGTTTATTCAATGACACATACAGCTTCTCCGTCAACAATACAAATTTGACGGTGAACAAGAAAGGCATCTCCTGGAAGAGTGATAGGGAGCACAAATTTGGAAAAGATGTTTTTCCCAAAAACTTCCAGAATGGTTCTATAATAGGTGGCGCACATCTTAATGAATCGATACCGTTGAATGAGCAGGAGGATCTTATTGTCTGGATGAGAACCGCTGCCTTACCAACTTTTAGGAAGTTATATGGAAAGATAGAGGTGGATTTGAATCAAGGTGACCTCATAGATGTAACACTTGAAAATAACTATAACACATACAGTTTCAATGGCAAGAAAAAGCTCGTACTGTCTACTACTAGCTGGCTTGGTGGGAAGAATGATTTCCTTGGCATTGCTTATCTCACTGTTGGAGGATTATGCTTCTTTTTATCGTTGGCTTTTACCATTGTATATTTTGTCAAGCCAAGGCAACTTGGAGATCCATCATATTTGTCATGGAATAGGACCCAAGGAGGGCAGTAA

Protein sequence

>Msa0251710

MASSSAAAAAAEAPGSADSTAPRRNTKRPKYSKFTQQELPACKPILTPRAVISAFLLVSVVFIPIGVASLMASRKVVEIVYGYESDCLPDGTKDEVAFIQSPETDKTCNITLNVTKHMKSPIYVYYQLDNFYQNHRRYVKSRSDEQLRSPKGENSVSACKPEDTANNRSIVPCGLIAWSLFNDTYSFSVNNTNLTVNKKGISWKSDREHKFGKDVFPKNFQNGSIIGGAHLNESIPLNEQEDLIVWMRTAALPTFRKLYGKIEVDLNQGDLIDVTLENNYNTYSFNGKKKLVLSTTSWLGGKNDFLGIAYLTVGGLCFFLSLAFTIVYFVKPRQLGDPSYLSWNRTQGGQ*