AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0096230


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096230 MtrunA17_Chr2g0306391 93.735 415 3 1 1 392 1 415 0.0 792
Msa0096230 MtrunA17_Chr4g0062811 73.529 408 78 6 12 392 10 414 0.0 591
Msa0096230 MtrunA17_Chr3g0132041 48.754 281 112 5 128 376 103 383 2.13e-82 257
Msa0096230 MtrunA17_Chr1g0208941 42.066 271 107 3 121 368 75 318 1.79e-64 210
Msa0096230 MtrunA17_Chr7g0235761 39.333 300 138 7 121 376 67 366 2.34e-63 207
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0096230 AT1G08510.1 70.864 405 86 6 1 376 1 402 0.0 546
Msa0096230 AT3G25110.1 40.604 298 131 8 121 377 68 360 2.43e-69 223
Msa0096230 AT4G13050.1 38.462 299 136 6 123 376 69 364 4.78e-66 214

Find 136 sgRNAs with CRISPR-Local

Find 286 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TATTAAATTGTTGTTATATA+TGG 0.196107 1_3:+1920997 Msa0096230:three_prime_UTR
AGCTCATGACTTTCCAAAAT+TGG 0.201804 1_3:-1920470 None:intergenic
TCAAAATTGTTGATAGGTTT+TGG 0.207603 1_3:-1920671 None:intergenic
CACTCACATCGCTGGCTTGC+TGG 0.220561 1_3:+1916331 Msa0096230:five_prime_UTR
TGTCAAGATTTCCCCTGTTT+TGG 0.226691 1_3:-1918474 None:intergenic
GAGTGCTCCACAGCCAATTT+TGG 0.240163 1_3:+1920457 Msa0096230:intron
ATAATGTTTGTTTGTGAGTT+AGG 0.244213 1_3:-1916355 None:intergenic
AACCGCAGTTCCGTTGATTT+TGG 0.259020 1_3:-1917292 None:intergenic
GAAAACAAGTAAGGCTTTAT+AGG 0.268157 1_3:-1920770 None:intergenic
TCCATCTTCCAATTCATATA+TGG 0.276238 1_3:+1920911 Msa0096230:three_prime_UTR
GTTAAGACTGCCGGGCTTCT+TGG 0.280843 1_3:+1917739 Msa0096230:CDS
TCGATTAGATCGTACGAAAT+AGG 0.292735 1_3:+1917549 Msa0096230:CDS
GATATGCTTGTTGATCCTTT+TGG 0.318826 1_3:+1917480 Msa0096230:CDS
ATGATGGTGCCGAGATTGTT+AGG 0.330723 1_3:+1920630 Msa0096230:CDS
CAGGGGCGGGCGGGATAGCC+AGG 0.333199 1_3:+1916253 Msa0096230:five_prime_UTR
ATCTCTCCTCTGACCTCTTC+CGG 0.338263 1_3:-1918869 None:intergenic
TGATAGTGAGTCAAACATTT+AGG 0.340023 1_3:-1920723 None:intergenic
CTGTTATCCTCGTCCACAAC+TGG 0.341684 1_3:-1918917 None:intergenic
ACGATCTAATCGAGAAGTTT+TGG 0.341954 1_3:-1917539 None:intergenic
TCATCAATCAGTTGCCTGAT+TGG 0.344132 1_3:+1917373 Msa0096230:CDS
CTTGTGCGGGATGCCAAAAC+AGG 0.344885 1_3:+1918461 Msa0096230:CDS
GACGTTAATGAATCATTTGC+AGG 0.353941 1_3:+1917596 Msa0096230:CDS
TACCATAACCATATATGAAT+TGG 0.355189 1_3:-1920919 None:intergenic
AAATCCAAGCAAAGCTCTAA+TGG 0.355569 1_3:+1917240 Msa0096230:CDS
TTCCAATTCATATATGGTTA+TGG 0.356436 1_3:+1920917 Msa0096230:three_prime_UTR
AGAACATCAAAATTGTTGAT+AGG 0.357493 1_3:-1920677 None:intergenic
GGGCTTCTTGGTGATGGCTT+TGG 0.374601 1_3:+1917751 Msa0096230:CDS
CTTCTCAGCAGCAAGGAAAA+TGG 0.375814 1_3:-1917421 None:intergenic
AGCAGAACTAACTCCATGTT+TGG 0.390225 1_3:-1917202 None:intergenic
GATGAAGATGATGATGTAAC+AGG 0.397644 1_3:-1917159 None:intergenic
TATATGGTTATGGTACTGTT+AGG 0.400638 1_3:+1920927 Msa0096230:three_prime_UTR
GTTAATTCAACGGGTGAAAG+AGG 0.404470 1_3:+1920827 Msa0096230:three_prime_UTR
GACACTTGGGTTTCTGCGGC+AGG 0.408861 1_3:+1918413 Msa0096230:CDS
ACTAACTAAACTTGATGATT+CGG 0.409649 1_3:+1918943 Msa0096230:CDS
TAATGTTTGTTTGTGAGTTA+GGG 0.414341 1_3:-1916354 None:intergenic
AAAGGATCAACAAGCATATC+AGG 0.416344 1_3:-1917477 None:intergenic
CTAATATATGTTAATTCAAC+GGG 0.440914 1_3:+1920818 Msa0096230:three_prime_UTR
CAGTCCCTGACATCTGTCTC+TGG 0.445222 1_3:+1920545 Msa0096230:CDS
TAGAGAACTTTAAAAGCAGC+AGG 0.455932 1_3:+1916234 None:intergenic
TGAGCTGCATTCCATGACTT+TGG 0.456877 1_3:+1920487 Msa0096230:CDS
AAGGAAACTATCTAAAATTC+CGG 0.457461 1_3:+1918850 Msa0096230:CDS
GCAAGAAGCATGCTCCAATC+AGG 0.458148 1_3:-1917387 None:intergenic
CAAGAGAATAGAGTTGAAAC+AGG 0.464573 1_3:-1916488 None:intergenic
CTTAATCATGTTAAGACTGC+CGG 0.467906 1_3:+1917730 Msa0096230:CDS
AGCAGTGGATGATGCTTGAT+TGG 0.473258 1_3:+1917442 Msa0096230:CDS
TAAAAGCAGCAGGGGCGGGC+GGG 0.477170 1_3:+1916244 Msa0096230:five_prime_UTR
GTTAGTTCTGCTAACCTTGG+AGG 0.478639 1_3:+1917213 Msa0096230:CDS
GTGAGTGAGTGGCACAGAAT+TGG 0.479676 1_3:-1916315 None:intergenic
AAAATGGTATGCGTCGTGAT+TGG 0.485644 1_3:+1918438 Msa0096230:CDS
GAGATTGTTAGGGGTAGGAC+TGG 0.487479 1_3:+1920641 Msa0096230:CDS
TCTGTCTCTGGTGCTGACAT+TGG 0.489613 1_3:+1920557 Msa0096230:CDS
AACTGATTGATGAATGTCCT+TGG 0.491484 1_3:-1917363 None:intergenic
TTAAAAGCAGCAGGGGCGGG+CGG 0.491991 1_3:+1916243 Msa0096230:five_prime_UTR
TATCAGCTGGAGGTGCAGAT+TGG 0.494151 1_3:+1920741 Msa0096230:three_prime_UTR
ACTTTAAAAGCAGCAGGGGC+GGG 0.495025 1_3:+1916240 None:intergenic
GGGCGGGCGGGATAGCCAGG+TGG 0.495614 1_3:+1916256 Msa0096230:five_prime_UTR
TGATGGTGCCGAGATTGTTA+GGG 0.496988 1_3:+1920631 Msa0096230:CDS
TTCTGATCCAGTTGTGGACG+AGG 0.498778 1_3:+1918910 Msa0096230:CDS
ACTGCCGGGCTTCTTGGTGA+TGG 0.499989 1_3:+1917745 Msa0096230:CDS
AAAGCCATCACCAAGAAGCC+CGG 0.500537 1_3:-1917749 None:intergenic
ACTATCTAAAATTCCGGAAG+AGG 0.500584 1_3:+1918856 Msa0096230:CDS
TGTTACTCGGATGCAGGTTG+TGG 0.502339 1_3:+1917813 Msa0096230:CDS
TGACTTTCCAAAATTGGCTG+TGG 0.502973 1_3:-1920464 None:intergenic
TATATAACGAAGTGGCTGGC+TGG 0.505440 1_3:+1916289 Msa0096230:five_prime_UTR
AACATTTAGGTGCTCTGTGA+TGG 0.506232 1_3:-1920710 None:intergenic
ACCATATATGAATTGGAAGA+TGG 0.507891 1_3:-1920912 None:intergenic
TCAACGGGTGAAAGAGGGAT+AGG 0.509607 1_3:+1920833 Msa0096230:three_prime_UTR
ATGTTTGACTCACTATCAGC+TGG 0.510915 1_3:+1920728 Msa0096230:three_prime_UTR
ATTCCATGACTTTGGAGTAC+AGG 0.511740 1_3:+1920495 Msa0096230:CDS
AACTTTAAAAGCAGCAGGGG+CGG 0.513042 1_3:+1916239 None:intergenic
CACTTGCTTCGACTCGATGA+TGG 0.516598 1_3:+1920614 Msa0096230:CDS
ACTTGATATGGGTTGTTACT+CGG 0.517014 1_3:+1917800 Msa0096230:CDS
TAATCCATTAGAGCTTTGCT+TGG 0.517131 1_3:-1917244 None:intergenic
AGAACTAACTCCATGTTTGG+AGG 0.519503 1_3:-1917199 None:intergenic
GTGCCACTCACTCACATCGC+TGG 0.520638 1_3:+1916323 Msa0096230:five_prime_UTR
AGATCTCATGAAAACAAGTA+AGG 0.521133 1_3:-1920779 None:intergenic
TCGGCTGAATATATTCGCAC+TGG 0.521996 1_3:+1918962 Msa0096230:CDS
TATATATATAACGAAGTGGC+TGG 0.531033 1_3:+1916285 Msa0096230:five_prime_UTR
TTAATCATGTTAAGACTGCC+GGG 0.532564 1_3:+1917731 Msa0096230:CDS
TCATCTTCATCTGACAGTGT+TGG 0.533513 1_3:+1917171 Msa0096230:CDS
CAGCACCAGAGACAGATGTC+AGG 0.537306 1_3:-1920550 None:intergenic
GTCCTTGGGTGATGTTGTGA+TGG 0.537958 1_3:-1917348 None:intergenic
ATGGGTTGTTACTCGGATGC+AGG 0.539000 1_3:+1917807 Msa0096230:CDS
TCCTTGCTGCTGAGAAGCAG+TGG 0.539829 1_3:+1917427 Msa0096230:CDS
AGATTGTTAGGGGTAGGACT+GGG 0.539935 1_3:+1920642 Msa0096230:CDS
GGAGTTAGTTCTGCTAACCT+TGG 0.540076 1_3:+1917210 Msa0096230:CDS
TGAATTGGAAGATGGAGCAG+AGG 0.546647 1_3:-1920904 None:intergenic
AAGTTGTTCAAGTAGACACT+TGG 0.551856 1_3:+1918399 Msa0096230:CDS
TTAATTCAACGGGTGAAAGA+GGG 0.552381 1_3:+1920828 Msa0096230:three_prime_UTR
GCGTCGTGATTGGCTTGTGC+GGG 0.553139 1_3:+1918448 Msa0096230:CDS
TTGTTAGGGGTAGGACTGGG+TGG 0.554507 1_3:+1920645 Msa0096230:CDS
TTGGAAATTTAGCTGACAGC+GGG 0.555268 1_3:+1920576 Msa0096230:CDS
ACTAATATATGTTAATTCAA+CGG 0.555346 1_3:+1920817 Msa0096230:three_prime_UTR
TGAATTGAAGAGAAGAGAAG+AGG 0.555485 1_3:-1916384 None:intergenic
TTGTGCGGGATGCCAAAACA+GGG 0.559601 1_3:+1918462 Msa0096230:CDS
GCTTGGATTTGAATCCTCCA+AGG 0.561042 1_3:-1917227 None:intergenic
ACTGATTGATGAATGTCCTT+GGG 0.565331 1_3:-1917362 None:intergenic
ACAAGCATATCAGGTCGTCT+TGG 0.565978 1_3:-1917468 None:intergenic
TGTTAATTCTGATCCAGTTG+TGG 0.567572 1_3:+1918904 Msa0096230:CDS
AGCAAGGAAAATGGTGGTAA+CGG 0.574467 1_3:-1917412 None:intergenic
AGTCCTACCCCTAACAATCT+CGG 0.577020 1_3:-1920639 None:intergenic
AGTACAGGAGGGAATGTGGC+AGG 0.577889 1_3:+1920510 Msa0096230:CDS
TGCGTCGTGATTGGCTTGTG+CGG 0.578969 1_3:+1918447 Msa0096230:CDS
TTAGGGGTAGGACTGGGTGG+AGG 0.580415 1_3:+1920648 Msa0096230:CDS
ATAGGGAAAATTGTTCAAGA+TGG 0.583369 1_3:+1917504 Msa0096230:CDS
AAATCTTGACAAGAGCATCC+AGG 0.590317 1_3:+1918486 Msa0096230:CDS
CCATGACTTTGGAGTACAGG+AGG 0.592758 1_3:+1920498 Msa0096230:CDS
TCCACTGCTTCTCAGCAGCA+AGG 0.592772 1_3:-1917428 None:intergenic
GAGCAGAGGAAGAATAGAGT+AGG 0.593628 1_3:-1920890 None:intergenic
CCTCCTGTACTCCAAAGTCA+TGG 0.597089 1_3:-1920498 None:intergenic
CAACGGGTGAAAGAGGGATA+GGG 0.600933 1_3:+1920834 Msa0096230:three_prime_UTR
GAGAACTTTAAAAGCAGCAG+GGG 0.603405 1_3:+1916236 None:intergenic
GTTGGAAAATCCTCCAAACA+TGG 0.605432 1_3:+1917189 Msa0096230:CDS
GGTTACAACTGCGACGGTGA+AGG 0.607892 1_3:+1917311 Msa0096230:CDS
AGTTGTTCAAGTAGACACTT+GGG 0.611713 1_3:+1918400 Msa0096230:CDS
TTGGAGTACAGGAGGGAATG+TGG 0.613380 1_3:+1920506 Msa0096230:CDS
AGCACCAGAGACAGATGTCA+GGG 0.622472 1_3:-1920549 None:intergenic
CACCATCACAACATCACCCA+AGG 0.625250 1_3:+1917346 Msa0096230:CDS
AGTAGACACTTGGGTTTCTG+CGG 0.630478 1_3:+1918409 Msa0096230:CDS
CATGACTTTGGAGTACAGGA+GGG 0.633124 1_3:+1920499 Msa0096230:CDS
AGAGAACTTTAAAAGCAGCA+GGG 0.637070 1_3:+1916235 None:intergenic
GATGGTGCCGAGATTGTTAG+GGG 0.638472 1_3:+1920632 Msa0096230:CDS
GTGCCGAGATTGTTAGGGGT+AGG 0.642317 1_3:+1920636 Msa0096230:CDS
AAGCCAGCGATGTGAGTGAG+TGG 0.643224 1_3:-1916326 None:intergenic
AACTGCGGTTACAACTGCGA+CGG 0.643594 1_3:+1917305 Msa0096230:CDS
TGGTTGATCGTTATCCGACG+TGG 0.644890 1_3:+1917833 Msa0096230:CDS
GCAGCACCTTCCAAAATCAA+CGG 0.646470 1_3:+1917282 Msa0096230:CDS
TCATGATGAATAAACTGACA+AGG 0.652704 1_3:+1918831 Msa0096230:CDS
AAAATTCCGGAAGAGGTCAG+AGG 0.654352 1_3:+1918863 Msa0096230:CDS
CTCAGCAGCAAGGAAAATGG+TGG 0.660147 1_3:-1917418 None:intergenic
ATTGGAAATTTAGCTGACAG+CGG 0.670615 1_3:+1920575 Msa0096230:CDS
TTCCAAAATCAACGGAACTG+CGG 0.674773 1_3:+1917290 Msa0096230:CDS
TTTGACTCACTATCAGCTGG+AGG 0.685307 1_3:+1920731 Msa0096230:three_prime_UTR
TAGATCGTACGAAATAGGTG+CGG 0.735860 1_3:+1917554 Msa0096230:CDS
TGTGCGGGATGCCAAAACAG+GGG 0.744085 1_3:+1918463 Msa0096230:CDS
AAGGTTAAGACTAACCACGT+CGG 0.758321 1_3:-1917847 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAATTGAACAAAAAAAAA+AGG - chr1_3:1916695-1916714 None:intergenic 10.0%
!!! TTTTTGTAATTTTCTTTTTT+GGG - chr1_3:1916846-1916865 None:intergenic 10.0%
!!! TTTTTTGTAATTTTCTTTTT+TGG - chr1_3:1916847-1916866 None:intergenic 10.0%
!!! TGTTATTGTTTTTTTTTTTT+TGG + chr1_3:1916961-1916980 Msa0096230:intron 10.0%
!!! ATTATCAATTTTTGTAAAAT+AGG - chr1_3:1918668-1918687 None:intergenic 10.0%
!!! AAATTTTAGAGAAAAAAATT+GGG - chr1_3:1919430-1919449 None:intergenic 10.0%
!!! AATTAATAATTACTTTTAGA+TGG - chr1_3:1919596-1919615 None:intergenic 10.0%
!!! ATTTAATTTTTTCTTCAAAA+TGG + chr1_3:1920963-1920982 Msa0096230:three_prime_UTR 10.0%
!!! TATTAAATTGTTGTTATATA+TGG + chr1_3:1920997-1921016 Msa0096230:three_prime_UTR 10.0%
!! TATATATATATATAACGAAG+TGG + chr1_3:1916281-1916300 Msa0096230:five_prime_UTR 15.0%
!!! ATTTTTTTTTTTTCTGTTTG+TGG + chr1_3:1916615-1916634 Msa0096230:intron 15.0%
!!! TAATTATTTGTTTTGATAAC+AGG + chr1_3:1917699-1917718 Msa0096230:intron 15.0%
!!! TACAAACTTTTTATAAAAGT+AGG - chr1_3:1918185-1918204 None:intergenic 15.0%
!!! GAAATTTTAGAGAAAAAAAT+TGG - chr1_3:1919431-1919450 None:intergenic 15.0%
!! ACTAAACAAATAATCAAAAA+GGG - chr1_3:1920383-1920402 None:intergenic 15.0%
!! ACTAATATATGTTAATTCAA+CGG + chr1_3:1920817-1920836 Msa0096230:three_prime_UTR 15.0%
!! ATATATATATATAATCCACC+TGG - chr1_3:1916274-1916293 None:intergenic 20.0%
!!! GAGATTTTGAATTTTGAATA+TGG - chr1_3:1916421-1916440 None:intergenic 20.0%
!! TTAAGTGATTATACAAAGTT+AGG - chr1_3:1916885-1916904 None:intergenic 20.0%
!! TGTATAATCACTTAAATTCA+AGG + chr1_3:1916890-1916909 Msa0096230:intron 20.0%
!!! TTGTTTTGTAGATGTTATTA+TGG + chr1_3:1917042-1917061 Msa0096230:intron 20.0%
!!! TTTATGTAACAAATTTGTTG+TGG + chr1_3:1917652-1917671 Msa0096230:intron 20.0%
!!! TTATGTAACAAATTTGTTGT+GGG + chr1_3:1917653-1917672 Msa0096230:intron 20.0%
!!! AGCTTTATACATATGAATTT+TGG + chr1_3:1918091-1918110 Msa0096230:intron 20.0%
!!! GCTTTATACATATGAATTTT+GGG + chr1_3:1918092-1918111 Msa0096230:intron 20.0%
!!! TATGCTTGAAATTATGTTTT+TGG + chr1_3:1918320-1918339 Msa0096230:intron 20.0%
!!! AACATTTTCAACATATCTTA+TGG - chr1_3:1918554-1918573 None:intergenic 20.0%
!! TTAATAATGTGAAGTACATT+GGG + chr1_3:1919117-1919136 Msa0096230:intron 20.0%
!! ATCTTTGATAAACAAATCAA+TGG + chr1_3:1920249-1920268 Msa0096230:intron 20.0%
!! GACTAAACAAATAATCAAAA+AGG - chr1_3:1920384-1920403 None:intergenic 20.0%
!! CTAATATATGTTAATTCAAC+GGG + chr1_3:1920818-1920837 Msa0096230:three_prime_UTR 20.0%
!! ACTTTCATTGGAAAAAAATA+AGG - chr1_3:1921028-1921047 None:intergenic 20.0%
! TAATGTTTGTTTGTGAGTTA+GGG - chr1_3:1916357-1916376 None:intergenic 25.0%
! ATAATGTTTGTTTGTGAGTT+AGG - chr1_3:1916358-1916377 None:intergenic 25.0%
!! TCATTTTCTCTCATTCTTTA+AGG + chr1_3:1916513-1916532 Msa0096230:five_prime_UTR 25.0%
! ATAATCACTTAAATTCAAGG+TGG + chr1_3:1916893-1916912 Msa0096230:intron 25.0%
! ACAACAACAAAACAACAATT+TGG - chr1_3:1916987-1917006 None:intergenic 25.0%
! TTAAATTTGAATTTGCATGC+AGG + chr1_3:1917090-1917109 Msa0096230:intron 25.0%
! GCACATTTAACAAATCAAAA+AGG - chr1_3:1917869-1917888 None:intergenic 25.0%
! ATTTAACCTAATCTTCAATC+TGG - chr1_3:1918036-1918055 None:intergenic 25.0%
! AAGATTAGGTTAAATTCTTC+TGG + chr1_3:1918041-1918060 Msa0096230:intron 25.0%
! AGATTAGGTTAAATTCTTCT+GGG + chr1_3:1918042-1918061 Msa0096230:intron 25.0%
! ACAGGGTATGAAATATAAAA+TGG + chr1_3:1918138-1918157 Msa0096230:intron 25.0%
!!! TTTTGCAATTTCTGATTTGT+TGG + chr1_3:1918778-1918797 Msa0096230:intron 25.0%
!! TTTTGATGTTTTACAGTGTT+TGG + chr1_3:1918807-1918826 Msa0096230:intron 25.0%
!! TTTGATGTTTTACAGTGTTT+GGG + chr1_3:1918808-1918827 Msa0096230:intron 25.0%
!! AAGGAAACTATCTAAAATTC+CGG + chr1_3:1918850-1918869 Msa0096230:CDS 25.0%
!! ACTAACTAAACTTGATGATT+CGG + chr1_3:1918943-1918962 Msa0096230:CDS 25.0%
! GTTAATAATGTGAAGTACAT+TGG + chr1_3:1919116-1919135 Msa0096230:intron 25.0%
!!! ATATCCAAGGTTCTAAATAA+CGG + chr1_3:1919178-1919197 Msa0096230:intron 25.0%
!! TCATCTCTTATTTAAGTTCA+AGG - chr1_3:1919519-1919538 None:intergenic 25.0%
!!! TGTTATTTTTTGAGTGGATA+AGG - chr1_3:1919713-1919732 None:intergenic 25.0%
!!! TTGTTGTGTTATTTTTTGAG+TGG - chr1_3:1919719-1919738 None:intergenic 25.0%
! ATATCAACAGTAGAATGAAT+TGG + chr1_3:1920336-1920355 Msa0096230:intron 25.0%
! GTTTAGTCAATAAACTTATC+AGG + chr1_3:1920396-1920415 Msa0096230:intron 25.0%
!!! TCAAAATTGTTGATAGGTTT+TGG - chr1_3:1920674-1920693 None:intergenic 25.0%
! AGAACATCAAAATTGTTGAT+AGG - chr1_3:1920680-1920699 None:intergenic 25.0%
! TTCCAATTCATATATGGTTA+TGG + chr1_3:1920917-1920936 Msa0096230:three_prime_UTR 25.0%
! TACCATAACCATATATGAAT+TGG - chr1_3:1920922-1920941 None:intergenic 25.0%
TATATATATAACGAAGTGGC+TGG + chr1_3:1916285-1916304 Msa0096230:five_prime_UTR 30.0%
! CAAACATATTCCACACTTTT+TGG + chr1_3:1916440-1916459 Msa0096230:five_prime_UTR 30.0%
GAATTAGAATCCAAAAAGTG+TGG - chr1_3:1916453-1916472 None:intergenic 30.0%
! AAACAGGTCTGTATTGTTTT+TGG - chr1_3:1916475-1916494 None:intergenic 30.0%
!! TTTTGTTTCTTCTATGAAGC+TGG - chr1_3:1916585-1916604 None:intergenic 30.0%
! TTTTCTGTTTGTGGCTTTTA+AGG + chr1_3:1916624-1916643 Msa0096230:intron 30.0%
! TTGTTGATCCTTTTGGTATA+GGG + chr1_3:1917487-1917506 Msa0096230:CDS 30.0%
! ACAATTTTCCCTATACCAAA+AGG - chr1_3:1917498-1917517 None:intergenic 30.0%
ATAGGGAAAATTGTTCAAGA+TGG + chr1_3:1917504-1917523 Msa0096230:CDS 30.0%
! AAGTTCTTTTTGCACATTTC+TGG - chr1_3:1917784-1917803 None:intergenic 30.0%
TGTGCAAAAAGAACTTGATA+TGG + chr1_3:1917788-1917807 Msa0096230:CDS 30.0%
GTGCAAAAAGAACTTGATAT+GGG + chr1_3:1917789-1917808 Msa0096230:CDS 30.0%
!! TGCTATCTCTATTTCTATCT+TGG + chr1_3:1917906-1917925 Msa0096230:intron 30.0%
! ATAGCTAAACTTTTTGTCTC+AGG + chr1_3:1917998-1918017 Msa0096230:intron 30.0%
TACCATCATAATATGTAGCT+AGG - chr1_3:1918223-1918242 None:intergenic 30.0%
AACAATTTGCAAAGTACAGA+CGG - chr1_3:1918285-1918304 None:intergenic 30.0%
AGTGAATCTATATTTGCTTC+AGG + chr1_3:1918372-1918391 Msa0096230:intron 30.0%
GTGAATCTATATTTGCTTCA+GGG + chr1_3:1918373-1918392 Msa0096230:intron 30.0%
TGAATCTATATTTGCTTCAG+GGG + chr1_3:1918374-1918393 Msa0096230:intron 30.0%
GCTTGAAAGATTAAAAACAG+TGG - chr1_3:1918610-1918629 None:intergenic 30.0%
!! TCAGTTTGCTTTTGTCAAAT+CGG + chr1_3:1918695-1918714 Msa0096230:intron 30.0%
TCATGATGAATAAACTGACA+AGG + chr1_3:1918831-1918850 Msa0096230:CDS 30.0%
ACCTAAATACTCAAACTAAG+TGG + chr1_3:1919465-1919484 Msa0096230:intron 30.0%
! ACCACTTAGTTTGAGTATTT+AGG - chr1_3:1919469-1919488 None:intergenic 30.0%
!!! TTTTTGAGTGGATAAGGATA+AGG - chr1_3:1919707-1919726 None:intergenic 30.0%
! ATCTTTTGTGATCCTATTTG+AGG - chr1_3:1919847-1919866 None:intergenic 30.0%
AATACAAGAACAGAAGAAGA+AGG - chr1_3:1919882-1919901 None:intergenic 30.0%
GAAAAGTCAGAAATTAGAAC+AGG - chr1_3:1919948-1919967 None:intergenic 30.0%
ATGACCAAGGTTTCAAAAAA+CGG - chr1_3:1920136-1920155 None:intergenic 30.0%
! TGATAGTGAGTCAAACATTT+AGG - chr1_3:1920726-1920745 None:intergenic 30.0%
! GAAAACAAGTAAGGCTTTAT+AGG - chr1_3:1920773-1920792 None:intergenic 30.0%
AGATCTCATGAAAACAAGTA+AGG - chr1_3:1920782-1920801 None:intergenic 30.0%
TCCATCTTCCAATTCATATA+TGG + chr1_3:1920911-1920930 Msa0096230:three_prime_UTR 30.0%
ACCATATATGAATTGGAAGA+TGG - chr1_3:1920915-1920934 None:intergenic 30.0%
TATATGGTTATGGTACTGTT+AGG + chr1_3:1920927-1920946 Msa0096230:three_prime_UTR 30.0%
TGAATTGAAGAGAAGAGAAG+AGG - chr1_3:1916387-1916406 None:intergenic 35.0%
CAAGAGAATAGAGTTGAAAC+AGG - chr1_3:1916491-1916510 None:intergenic 35.0%
! AGGAATAAAACGCATCGTTT+TGG - chr1_3:1916541-1916560 None:intergenic 35.0%
TGCAGGTGTAAAAATCAACA+TGG + chr1_3:1917107-1917126 Msa0096230:intron 35.0%
! GATGAAGATGATGATGTAAC+AGG - chr1_3:1917162-1917181 None:intergenic 35.0%
! AAATCCAAGCAAAGCTCTAA+TGG + chr1_3:1917240-1917259 Msa0096230:CDS 35.0%
TAATCCATTAGAGCTTTGCT+TGG - chr1_3:1917247-1917266 None:intergenic 35.0%
ACTGATTGATGAATGTCCTT+GGG - chr1_3:1917365-1917384 None:intergenic 35.0%
AACTGATTGATGAATGTCCT+TGG - chr1_3:1917366-1917385 None:intergenic 35.0%
AAAGGATCAACAAGCATATC+AGG - chr1_3:1917480-1917499 None:intergenic 35.0%
!! GATATGCTTGTTGATCCTTT+TGG + chr1_3:1917480-1917499 Msa0096230:CDS 35.0%
! CTTGTTGATCCTTTTGGTAT+AGG + chr1_3:1917486-1917505 Msa0096230:CDS 35.0%
! ACGATCTAATCGAGAAGTTT+TGG - chr1_3:1917542-1917561 None:intergenic 35.0%
TCGATTAGATCGTACGAAAT+AGG + chr1_3:1917549-1917568 Msa0096230:CDS 35.0%
GACGTTAATGAATCATTTGC+AGG + chr1_3:1917596-1917615 Msa0096230:CDS 35.0%
CTTAATCATGTTAAGACTGC+CGG + chr1_3:1917730-1917749 Msa0096230:CDS 35.0%
TTAATCATGTTAAGACTGCC+GGG + chr1_3:1917731-1917750 Msa0096230:CDS 35.0%
! ACTTGATATGGGTTGTTACT+CGG + chr1_3:1917800-1917819 Msa0096230:CDS 35.0%
ATAGCACCAGATTGAAGATT+AGG + chr1_3:1918027-1918046 Msa0096230:intron 35.0%
TTGGGATTTCCTTTGTCTTT+AGG + chr1_3:1918110-1918129 Msa0096230:intron 35.0%
TTTGTCTTTAGGCTGTTACA+GGG + chr1_3:1918121-1918140 Msa0096230:intron 35.0%
AGCCTAGCTACATATTATGA+TGG + chr1_3:1918218-1918237 Msa0096230:intron 35.0%
AAGTTGTTCAAGTAGACACT+TGG + chr1_3:1918399-1918418 Msa0096230:CDS 35.0%
AGTTGTTCAAGTAGACACTT+GGG + chr1_3:1918400-1918419 Msa0096230:CDS 35.0%
!! GTTCTGAATTGACTTTTACC+TGG - chr1_3:1918507-1918526 None:intergenic 35.0%
! ACTATCTAAAATTCCGGAAG+AGG + chr1_3:1918856-1918875 Msa0096230:CDS 35.0%
TGTTAATTCTGATCCAGTTG+TGG + chr1_3:1918904-1918923 Msa0096230:CDS 35.0%
ACATCTAGATCATTCCATCT+GGG - chr1_3:1919086-1919105 None:intergenic 35.0%
AACATCTAGATCATTCCATC+TGG - chr1_3:1919087-1919106 None:intergenic 35.0%
ATAATGTGAAGTACATTGGG+TGG + chr1_3:1919120-1919139 Msa0096230:intron 35.0%
CAAATAAACCGTGTGTGTAT+TGG + chr1_3:1919659-1919678 Msa0096230:intron 35.0%
! CTATTGTGTTATTCTGCTTG+AGG - chr1_3:1919798-1919817 None:intergenic 35.0%
TGAAATCGCAAACCTCAAAT+AGG + chr1_3:1919832-1919851 Msa0096230:intron 35.0%
AGAAATTAGAACAGGAGAAG+AGG - chr1_3:1919940-1919959 None:intergenic 35.0%
! TTTTTGTTCTCGACGTGAAA+AGG + chr1_3:1920048-1920067 Msa0096230:intron 35.0%
TAGTAGAGATCGTCTGAATA+AGG + chr1_3:1920213-1920232 Msa0096230:intron 35.0%
! GAATGAATTGGTCACTTTAG+AGG + chr1_3:1920348-1920367 Msa0096230:intron 35.0%
!!! ACAATCCCTTTTTGGTTAAG+CGG - chr1_3:1920422-1920441 None:intergenic 35.0%
! ATCAAACCACAATCCCTTTT+TGG - chr1_3:1920430-1920449 None:intergenic 35.0%
AGCTCATGACTTTCCAAAAT+TGG - chr1_3:1920473-1920492 None:intergenic 35.0%
ATTGGAAATTTAGCTGACAG+CGG + chr1_3:1920575-1920594 Msa0096230:CDS 35.0%
TTAATTCAACGGGTGAAAGA+GGG + chr1_3:1920828-1920847 Msa0096230:three_prime_UTR 35.0%
TGTTTCTTCTATGAAGCTGG+TGG - chr1_3:1916582-1916601 None:intergenic 40.0%
GAAAGTCTCAAATGAAGCTC+AGG - chr1_3:1916745-1916764 None:intergenic 40.0%
TCATCTTCATCTGACAGTGT+TGG + chr1_3:1917171-1917190 Msa0096230:CDS 40.0%
GTTGGAAAATCCTCCAAACA+TGG + chr1_3:1917189-1917208 Msa0096230:CDS 40.0%
AGAACTAACTCCATGTTTGG+AGG - chr1_3:1917202-1917221 None:intergenic 40.0%
AGCAGAACTAACTCCATGTT+TGG - chr1_3:1917205-1917224 None:intergenic 40.0%
TTCCAAAATCAACGGAACTG+CGG + chr1_3:1917290-1917309 Msa0096230:CDS 40.0%
TCATCAATCAGTTGCCTGAT+TGG + chr1_3:1917373-1917392 Msa0096230:CDS 40.0%
AGCAAGGAAAATGGTGGTAA+CGG - chr1_3:1917415-1917434 None:intergenic 40.0%
TAGATCGTACGAAATAGGTG+CGG + chr1_3:1917554-1917573 Msa0096230:CDS 40.0%
AAGGTTAAGACTAACCACGT+CGG - chr1_3:1917850-1917869 None:intergenic 40.0%
TAGAGATAGCAGCTGAACTA+AGG - chr1_3:1917897-1917916 None:intergenic 40.0%
CTGTAACAGCCTAAAGACAA+AGG - chr1_3:1918122-1918141 None:intergenic 40.0%
CTTTGTCTTTAGGCTGTTAC+AGG + chr1_3:1918120-1918139 Msa0096230:intron 40.0%
AAAATGGTATGCGTCGTGAT+TGG + chr1_3:1918438-1918457 Msa0096230:CDS 40.0%
! TGTCAAGATTTCCCCTGTTT+TGG - chr1_3:1918477-1918496 None:intergenic 40.0%
!! AAATCTTGACAAGAGCATCC+AGG + chr1_3:1918486-1918505 Msa0096230:CDS 40.0%
AGTGAAGAAAGGAGCAAGAA+AGG - chr1_3:1918529-1918548 None:intergenic 40.0%
TTTCTTGCTCCTTTCTTCAC+TGG + chr1_3:1918528-1918547 Msa0096230:intron 40.0%
ATCTTATGGCCAGTGAAGAA+AGG - chr1_3:1918540-1918559 None:intergenic 40.0%
! ATCTCTATTTTCAGCCCAGA+TGG + chr1_3:1919069-1919088 Msa0096230:intron 40.0%
CTTGTAGTCAGTCATATCCA+AGG + chr1_3:1919165-1919184 Msa0096230:intron 40.0%
!! AAGGTTCTAAATAACGGTCG+CGG + chr1_3:1919184-1919203 Msa0096230:intron 40.0%
GGACGTTGCGATACAAATAA+CGG + chr1_3:1919252-1919271 Msa0096230:intron 40.0%
GATACAAATAACGGTCTTCG+CGG + chr1_3:1919261-1919280 Msa0096230:intron 40.0%
GGATAAGGTTTGTGATCACT+TGG - chr1_3:1919692-1919711 None:intergenic 40.0%
CAACAAAATCGCAAATCGCA+AGG + chr1_3:1919733-1919752 Msa0096230:intron 40.0%
!!! CTGACTTTTCAAGTCTGTGA+CGG + chr1_3:1919958-1919977 Msa0096230:intron 40.0%
GACGTGAAAAGGTCCAAAAA+CGG + chr1_3:1920059-1920078 Msa0096230:intron 40.0%
AAAAGGTCCAAAAACGGTCA+CGG + chr1_3:1920065-1920084 Msa0096230:intron 40.0%
TTCAAAAAACGGACCTGTAC+CGG - chr1_3:1920125-1920144 None:intergenic 40.0%
!!! AGGTCCGTTTTTTGAAACCT+TGG + chr1_3:1920129-1920148 Msa0096230:intron 40.0%
GCTTAACCAAAAAGGGATTG+TGG + chr1_3:1920421-1920440 Msa0096230:intron 40.0%
TGACTTTCCAAAATTGGCTG+TGG - chr1_3:1920467-1920486 None:intergenic 40.0%
!! ATTCCATGACTTTGGAGTAC+AGG + chr1_3:1920495-1920514 Msa0096230:CDS 40.0%
TTGGAAATTTAGCTGACAGC+GGG + chr1_3:1920576-1920595 Msa0096230:CDS 40.0%
AACATTTAGGTGCTCTGTGA+TGG - chr1_3:1920713-1920732 None:intergenic 40.0%
ATGTTTGACTCACTATCAGC+TGG + chr1_3:1920728-1920747 Msa0096230:three_prime_UTR 40.0%
GTTAATTCAACGGGTGAAAG+AGG + chr1_3:1920827-1920846 Msa0096230:three_prime_UTR 40.0%
TATATAACGAAGTGGCTGGC+TGG + chr1_3:1916289-1916308 Msa0096230:five_prime_UTR 45.0%
GGAGGTGAATGAGAATGAGA+AGG - chr1_3:1916561-1916580 None:intergenic 45.0%
TTCTTCTATGAAGCTGGTGG+AGG - chr1_3:1916579-1916598 None:intergenic 45.0%
ATTCAAGGTGGTTGAGAGAG+AGG + chr1_3:1916905-1916924 Msa0096230:intron 45.0%
!! GGAGTTAGTTCTGCTAACCT+TGG + chr1_3:1917210-1917229 Msa0096230:CDS 45.0%
!! GTTAGTTCTGCTAACCTTGG+AGG + chr1_3:1917213-1917232 Msa0096230:CDS 45.0%
GCTTGGATTTGAATCCTCCA+AGG - chr1_3:1917230-1917249 None:intergenic 45.0%
GCAGCACCTTCCAAAATCAA+CGG + chr1_3:1917282-1917301 Msa0096230:CDS 45.0%
!!! GCAGTTCCGTTGATTTTGGA+AGG - chr1_3:1917291-1917310 None:intergenic 45.0%
!!! AACCGCAGTTCCGTTGATTT+TGG - chr1_3:1917295-1917314 None:intergenic 45.0%
CTTCTCAGCAGCAAGGAAAA+TGG - chr1_3:1917424-1917443 None:intergenic 45.0%
AGCAGTGGATGATGCTTGAT+TGG + chr1_3:1917442-1917461 Msa0096230:CDS 45.0%
ACAAGCATATCAGGTCGTCT+TGG - chr1_3:1917471-1917490 None:intergenic 45.0%
AGTAGACACTTGGGTTTCTG+CGG + chr1_3:1918409-1918428 Msa0096230:CDS 45.0%
GTTTCTGCGGCAGGAAAAAA+TGG + chr1_3:1918422-1918441 Msa0096230:CDS 45.0%
AAAAACAGTGGCCAGTCACA+AGG - chr1_3:1918598-1918617 None:intergenic 45.0%
AAAATTCCGGAAGAGGTCAG+AGG + chr1_3:1918863-1918882 Msa0096230:CDS 45.0%
TCGGCTGAATATATTCGCAC+TGG + chr1_3:1918962-1918981 Msa0096230:CDS 45.0%
! GAAGTACATTGGGTGGATTC+TGG + chr1_3:1919127-1919146 Msa0096230:intron 45.0%
! GCGACCGTTATTTAGAACCT+TGG - chr1_3:1919185-1919204 None:intergenic 45.0%
CGTTAAGGTTGTCGCGATTT+CGG + chr1_3:1919222-1919241 Msa0096230:intron 45.0%
! GTTTGCTGCCAATACACACA+CGG - chr1_3:1919670-1919689 None:intergenic 45.0%
TGCTTGAGGTTTGCGATTTC+TGG - chr1_3:1919784-1919803 None:intergenic 45.0%
GCGTTTCGTAACGTCCATAA+CGG + chr1_3:1920011-1920030 Msa0096230:intron 45.0%
TCACACGAAAATCGCCGTTA+TGG - chr1_3:1920028-1920047 None:intergenic 45.0%
!! CTGCCGATACCGATTTGTAA+CGG + chr1_3:1920091-1920110 Msa0096230:intron 45.0%
TCAAAAAACGGACCTGTACC+GGG - chr1_3:1920124-1920143 None:intergenic 45.0%
ATCAGGCCGCTTAACCAAAA+AGG + chr1_3:1920413-1920432 Msa0096230:intron 45.0%
TCAGGCCGCTTAACCAAAAA+GGG + chr1_3:1920414-1920433 Msa0096230:intron 45.0%
TGAGCTGCATTCCATGACTT+TGG + chr1_3:1920487-1920506 Msa0096230:CDS 45.0%
!! CATGACTTTGGAGTACAGGA+GGG + chr1_3:1920499-1920518 Msa0096230:CDS 45.0%
! ATGATGGTGCCGAGATTGTT+AGG + chr1_3:1920630-1920649 Msa0096230:CDS 45.0%
! TGATGGTGCCGAGATTGTTA+GGG + chr1_3:1920631-1920650 Msa0096230:CDS 45.0%
AGTCCTACCCCTAACAATCT+CGG - chr1_3:1920642-1920661 None:intergenic 45.0%
AGATTGTTAGGGGTAGGACT+GGG + chr1_3:1920642-1920661 Msa0096230:CDS 45.0%
TTTGACTCACTATCAGCTGG+AGG + chr1_3:1920731-1920750 Msa0096230:three_prime_UTR 45.0%
GAGCAGAGGAAGAATAGAGT+AGG - chr1_3:1920893-1920912 None:intergenic 45.0%
TGAATTGGAAGATGGAGCAG+AGG - chr1_3:1920907-1920926 None:intergenic 45.0%
!! TATTTATTATGTTATAATTA+TGG - chr1_3:1919374-1919393 None:intergenic 5.0%
GTGAGTGAGTGGCACAGAAT+TGG - chr1_3:1916318-1916337 None:intergenic 50.0%
AACTGCGGTTACAACTGCGA+CGG + chr1_3:1917305-1917324 Msa0096230:CDS 50.0%
CACCATCACAACATCACCCA+AGG + chr1_3:1917346-1917365 Msa0096230:CDS 50.0%
GTCCTTGGGTGATGTTGTGA+TGG - chr1_3:1917351-1917370 None:intergenic 50.0%
! GCAAGAAGCATGCTCCAATC+AGG - chr1_3:1917390-1917409 None:intergenic 50.0%
CTCAGCAGCAAGGAAAATGG+TGG - chr1_3:1917421-1917440 None:intergenic 50.0%
AAAGCCATCACCAAGAAGCC+CGG - chr1_3:1917752-1917771 None:intergenic 50.0%
! ATGGGTTGTTACTCGGATGC+AGG + chr1_3:1917807-1917826 Msa0096230:CDS 50.0%
TGTTACTCGGATGCAGGTTG+TGG + chr1_3:1917813-1917832 Msa0096230:CDS 50.0%
TGGTTGATCGTTATCCGACG+TGG + chr1_3:1917833-1917852 Msa0096230:CDS 50.0%
TTGTGCGGGATGCCAAAACA+GGG + chr1_3:1918462-1918481 Msa0096230:CDS 50.0%
GAATGTGCATGCCTTGTGAC+TGG + chr1_3:1918584-1918603 Msa0096230:intron 50.0%
ATCTCTCCTCTGACCTCTTC+CGG - chr1_3:1918872-1918891 None:intergenic 50.0%
TTCTGATCCAGTTGTGGACG+AGG + chr1_3:1918910-1918929 Msa0096230:CDS 50.0%
CTGTTATCCTCGTCCACAAC+TGG - chr1_3:1918920-1918939 None:intergenic 50.0%
! GTACATTGGGTGGATTCTGG+AGG + chr1_3:1919130-1919149 Msa0096230:intron 50.0%
TGTCGCGATTTCGGCTGTAA+CGG + chr1_3:1919231-1919250 Msa0096230:intron 50.0%
GACGTTACGAAACGCCGTTA+CGG - chr1_3:1920006-1920025 None:intergenic 50.0%
CGGCCGTTACAAATCGGTAT+CGG - chr1_3:1920097-1920116 None:intergenic 50.0%
GGATTGCGGCCGTTACAAAT+CGG - chr1_3:1920103-1920122 None:intergenic 50.0%
ATTTGTAACGGCCGCAATCC+CGG + chr1_3:1920103-1920122 Msa0096230:intron 50.0%
AGGAGGGGTAGATATGACCA+AGG - chr1_3:1920149-1920168 None:intergenic 50.0%
AACAAGAACGCGAGATAGCG+AGG - chr1_3:1920169-1920188 None:intergenic 50.0%
! GAGTGCTCCACAGCCAATTT+TGG + chr1_3:1920457-1920476 Msa0096230:intron 50.0%
CCTCCTGTACTCCAAAGTCA+TGG - chr1_3:1920501-1920520 None:intergenic 50.0%
!! CCATGACTTTGGAGTACAGG+AGG + chr1_3:1920498-1920517 Msa0096230:CDS 50.0%
TTGGAGTACAGGAGGGAATG+TGG + chr1_3:1920506-1920525 Msa0096230:CDS 50.0%
AGCACCAGAGACAGATGTCA+GGG - chr1_3:1920552-1920571 None:intergenic 50.0%
!! TCTGTCTCTGGTGCTGACAT+TGG + chr1_3:1920557-1920576 Msa0096230:CDS 50.0%
! CACTTGCTTCGACTCGATGA+TGG + chr1_3:1920614-1920633 Msa0096230:CDS 50.0%
! GATGGTGCCGAGATTGTTAG+GGG + chr1_3:1920632-1920651 Msa0096230:CDS 50.0%
GAGATTGTTAGGGGTAGGAC+TGG + chr1_3:1920641-1920660 Msa0096230:CDS 50.0%
! TATCAGCTGGAGGTGCAGAT+TGG + chr1_3:1920741-1920760 Msa0096230:three_prime_UTR 50.0%
TCAACGGGTGAAAGAGGGAT+AGG + chr1_3:1920833-1920852 Msa0096230:three_prime_UTR 50.0%
CAACGGGTGAAAGAGGGATA+GGG + chr1_3:1920834-1920853 Msa0096230:three_prime_UTR 50.0%
AAGCCAGCGATGTGAGTGAG+TGG - chr1_3:1916329-1916348 None:intergenic 55.0%
GGTTACAACTGCGACGGTGA+AGG + chr1_3:1917311-1917330 Msa0096230:CDS 55.0%
TCCTTGCTGCTGAGAAGCAG+TGG + chr1_3:1917427-1917446 Msa0096230:CDS 55.0%
TCCACTGCTTCTCAGCAGCA+AGG - chr1_3:1917431-1917450 None:intergenic 55.0%
GTTAAGACTGCCGGGCTTCT+TGG + chr1_3:1917739-1917758 Msa0096230:CDS 55.0%
!! GGGCTTCTTGGTGATGGCTT+TGG + chr1_3:1917751-1917770 Msa0096230:CDS 55.0%
!! TGCGTCGTGATTGGCTTGTG+CGG + chr1_3:1918447-1918466 Msa0096230:CDS 55.0%
CTTGTGCGGGATGCCAAAAC+AGG + chr1_3:1918461-1918480 Msa0096230:CDS 55.0%
TGTGCGGGATGCCAAAACAG+GGG + chr1_3:1918463-1918482 Msa0096230:CDS 55.0%
! GTCTGTGACGGAGTCCGTAA+CGG + chr1_3:1919970-1919989 Msa0096230:intron 55.0%
AGGTCCAAAAACGGTCACGG+TGG + chr1_3:1920068-1920087 Msa0096230:intron 55.0%
AGAACGCGAGATAGCGAGGA+GGG - chr1_3:1920165-1920184 None:intergenic 55.0%
AAGAACGCGAGATAGCGAGG+AGG - chr1_3:1920166-1920185 None:intergenic 55.0%
AGTACAGGAGGGAATGTGGC+AGG + chr1_3:1920510-1920529 Msa0096230:CDS 55.0%
CAGTCCCTGACATCTGTCTC+TGG + chr1_3:1920545-1920564 Msa0096230:CDS 55.0%
CAGCACCAGAGACAGATGTC+AGG - chr1_3:1920553-1920572 None:intergenic 55.0%
GTGCCGAGATTGTTAGGGGT+AGG + chr1_3:1920636-1920655 Msa0096230:CDS 55.0%
TTGTTAGGGGTAGGACTGGG+TGG + chr1_3:1920645-1920664 Msa0096230:CDS 55.0%
TTAAAAGCAGCAGGGGCGGG+CGG + chr1_3:1916243-1916262 Msa0096230:five_prime_UTR 60.0%
! GTGCCACTCACTCACATCGC+TGG + chr1_3:1916323-1916342 Msa0096230:five_prime_UTR 60.0%
!! CACTCACATCGCTGGCTTGC+TGG + chr1_3:1916331-1916350 Msa0096230:five_prime_UTR 60.0%
ACTGCCGGGCTTCTTGGTGA+TGG + chr1_3:1917745-1917764 Msa0096230:CDS 60.0%
GACACTTGGGTTTCTGCGGC+AGG + chr1_3:1918413-1918432 Msa0096230:CDS 60.0%
!! GCGTCGTGATTGGCTTGTGC+GGG + chr1_3:1918448-1918467 Msa0096230:CDS 60.0%
GAGTCCGTAACGGCGTTTCG+CGG + chr1_3:1919980-1919999 Msa0096230:intron 60.0%
! GCAGCCACCGTGACCGTTTT+TGG - chr1_3:1920075-1920094 None:intergenic 60.0%
ACGGACCTGTACCGGGATTG+CGG - chr1_3:1920117-1920136 None:intergenic 60.0%
GAACGCGAGATAGCGAGGAG+GGG - chr1_3:1920164-1920183 None:intergenic 60.0%
TTAGGGGTAGGACTGGGTGG+AGG + chr1_3:1920648-1920667 Msa0096230:CDS 60.0%
TAAAAGCAGCAGGGGCGGGC+GGG + chr1_3:1916244-1916263 Msa0096230:five_prime_UTR 65.0%
TCGCGATCGCGGTCGCGTTA+AGG + chr1_3:1919207-1919226 Msa0096230:intron 65.0%
ACGGCCGCGAAACGCCGTTA+CGG - chr1_3:1919987-1920006 None:intergenic 65.0%
ACGGCGTTTCGCGGCCGTAA+CGG + chr1_3:1919989-1920008 Msa0096230:intron 65.0%
AACGGCCGCAATCCCGGTAC+AGG + chr1_3:1920109-1920128 Msa0096230:intron 65.0%
AACGGTCGCGGTCGCGATCG+CGG + chr1_3:1919196-1919215 Msa0096230:intron 70.0%
! CAGGGGCGGGCGGGATAGCC+AGG + chr1_3:1916253-1916272 Msa0096230:five_prime_UTR 80.0%
! GGGCGGGCGGGATAGCCAGG+TGG + chr1_3:1916256-1916275 Msa0096230:five_prime_UTR 80.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 1916242 1921053 1916242 ID=Msa0096230;Name=Msa0096230
chr1_3 mRNA 1916242 1921053 1916242 ID=Msa0096230-mRNA-1;Parent=Msa0096230;Name=Msa0096230-mRNA-1;_AED=0.04;_eAED=0.04;_QI=307|0.8|1|1|0.8|0.66|6|326|392
chr1_3 exon 1916242 1916534 1916242 ID=Msa0096230-mRNA-1:exon:397;Parent=Msa0096230-mRNA-1
chr1_3 exon 1917112 1917617 1917112 ID=Msa0096230-mRNA-1:exon:398;Parent=Msa0096230-mRNA-1
chr1_3 exon 1917721 1917854 1917721 ID=Msa0096230-mRNA-1:exon:399;Parent=Msa0096230-mRNA-1
chr1_3 exon 1918394 1918507 1918394 ID=Msa0096230-mRNA-1:exon:400;Parent=Msa0096230-mRNA-1
chr1_3 exon 1918823 1918991 1918823 ID=Msa0096230-mRNA-1:exon:401;Parent=Msa0096230-mRNA-1
chr1_3 exon 1920458 1921053 1920458 ID=Msa0096230-mRNA-1:exon:402;Parent=Msa0096230-mRNA-1
chr1_3 five_prime_UTR 1916242 1916534 1916242 ID=Msa0096230-mRNA-1:five_prime_utr;Parent=Msa0096230-mRNA-1
chr1_3 five_prime_UTR 1917112 1917125 1917112 ID=Msa0096230-mRNA-1:five_prime_utr;Parent=Msa0096230-mRNA-1
chr1_3 CDS 1917126 1917617 1917126 ID=Msa0096230-mRNA-1:cds;Parent=Msa0096230-mRNA-1
chr1_3 CDS 1917721 1917854 1917721 ID=Msa0096230-mRNA-1:cds;Parent=Msa0096230-mRNA-1
chr1_3 CDS 1918394 1918507 1918394 ID=Msa0096230-mRNA-1:cds;Parent=Msa0096230-mRNA-1
chr1_3 CDS 1918823 1918991 1918823 ID=Msa0096230-mRNA-1:cds;Parent=Msa0096230-mRNA-1
chr1_3 CDS 1920458 1920727 1920458 ID=Msa0096230-mRNA-1:cds;Parent=Msa0096230-mRNA-1
chr1_3 three_prime_UTR 1920728 1921053 1920728 ID=Msa0096230-mRNA-1:three_prime_utr;Parent=Msa0096230-mRNA-1
Gene Sequence

>Msa0096230

ATGGTTGCAACTGCTGCAACATCTTCGTTTTTTCCTGTTACATCATCATCTTCATCTGACAGTGTTGGAAAATCCTCCAAACATGGAGTTAGTTCTGCTAACCTTGGAGGATTCAAATCCAAGCAAAGCTCTAATGGATTAAACATTAAAGCAAATGCAGCACCTTCCAAAATCAACGGAACTGCGGTTACAACTGCGACGGTGAAGGTTGAAAATGATTCACCATCACAACATCACCCAAGGACATTCATCAATCAGTTGCCTGATTGGAGCATGCTTCTTGCTGCCGTTACCACCATTTTCCTTGCTGCTGAGAAGCAGTGGATGATGCTTGATTGGAAGCCAAGACGACCTGATATGCTTGTTGATCCTTTTGGTATAGGGAAAATTGTTCAAGATGGTCTTGTGTTTCGCCAAAACTTCTCGATTAGATCGTACGAAATAGGTGCGGATAAAACTGCGTCTATAGAGACGTTAATGAATCATTTGCAGGAAACTGCACTTAATCATGTTAAGACTGCCGGGCTTCTTGGTGATGGCTTTGGTTCTACGCCAGAAATGTGCAAAAAGAACTTGATATGGGTTGTTACTCGGATGCAGGTTGTGGTTGATCGTTATCCGACGTGGGGTGAAGTTGTTCAAGTAGACACTTGGGTTTCTGCGGCAGGAAAAAATGGTATGCGTCGTGATTGGCTTGTGCGGGATGCCAAAACAGGGGAAATCTTGACAAGAGCATCCAGTGTTTGGGTCATGATGAATAAACTGACAAGGAAACTATCTAAAATTCCGGAAGAGGTCAGAGGAGAGATAGAGCATTATTTTGTTAATTCTGATCCAGTTGTGGACGAGGATAACAGAAAACTAACTAAACTTGATGATTCGGCTGAATATATTCGCACTGGTTTAAGTAGTGCTCCACAGCCAATTTTGGAAAGTCATGAGCTGCATTCCATGACTTTGGAGTACAGGAGGGAATGTGGCAGGAACAGTGTACTTCAGTCCCTGACATCTGTCTCTGGTGCTGACATTGGAAATTTAGCTGACAGCGGGTTTGTTGAATGCAAACACTTGCTTCGACTCGATGATGGTGCCGAGATTGTTAGGGGTAGGACTGGGTGGAGGCCAAAACCTATCAACAATTTTGATGTTCTGAATCAGTTTCCATCACAGAGCACCTAA

Protein sequence

>Msa0096230

MVATAATSSFFPVTSSSSSDSVGKSSKHGVSSANLGGFKSKQSSNGLNIKANAAPSKINGTAVTTATVKVENDSPSQHHPRTFINQLPDWSMLLAAVTTIFLAAEKQWMMLDWKPRRPDMLVDPFGIGKIVQDGLVFRQNFSIRSYEIGADKTASIETLMNHLQETALNHVKTAGLLGDGFGSTPEMCKKNLIWVVTRMQVVVDRYPTWGEVVQVDTWVSAAGKNGMRRDWLVRDAKTGEILTRASSVWVMMNKLTRKLSKIPEEVRGEIEHYFVNSDPVVDEDNRKLTKLDDSAEYIRTGLSSAPQPILESHELHSMTLEYRRECGRNSVLQSLTSVSGADIGNLADSGFVECKHLLRLDDGAEIVRGRTGWRPKPINNFDVLNQFPSQST*