Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071660 | XP_003624637.1 | 90.110 | 91 | 1 | 1 | 186 | 276 | 156 | 238 | 1.85e-22 | 103 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071660 | Q2HVN6 | 90.110 | 91 | 1 | 1 | 186 | 276 | 156 | 238 | 8.82e-23 | 103 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000940 | Msa1071660 | 0.801224 | 9.960996e-49 | -8.615850e-47 |
| Msa0004060 | Msa1071660 | 0.802805 | 4.711980e-49 | -8.615850e-47 |
| Msa0006880 | Msa1071660 | 0.810539 | 1.096038e-50 | -8.615850e-47 |
| Msa0007850 | Msa1071660 | 0.814113 | 1.817828e-51 | -8.615850e-47 |
| Msa0008840 | Msa1071660 | 0.809964 | 1.458661e-50 | -8.615850e-47 |
| Msa0010770 | Msa1071660 | 0.806664 | 7.369319e-50 | -8.615850e-47 |
| Msa0015680 | Msa1071660 | 0.803854 | 2.857044e-49 | -8.615850e-47 |
| Msa0033880 | Msa1071660 | 0.822959 | 1.791650e-53 | -8.615850e-47 |
| Msa0041690 | Msa1071660 | 0.818979 | 1.477147e-52 | -8.615850e-47 |
| Msa0052350 | Msa1071660 | -0.817875 | 2.628472e-52 | -8.615850e-47 |
| Msa0053240 | Msa1071660 | 0.810374 | 1.190028e-50 | -8.615850e-47 |
| Msa0055150 | Msa1071660 | 0.804042 | 2.611631e-49 | -8.615850e-47 |
| Msa0057750 | Msa1071660 | 0.805518 | 1.284413e-49 | -8.615850e-47 |
| Msa0090030 | Msa1071660 | 0.801027 | 1.092814e-48 | -8.615850e-47 |
| Msa0097950 | Msa1071660 | 0.817304 | 3.534407e-52 | -8.615850e-47 |
| Msa0098740 | Msa1071660 | 0.809615 | 1.733876e-50 | -8.615850e-47 |
| Msa0100800 | Msa1071660 | 0.820555 | 6.447784e-53 | -8.615850e-47 |
| Msa0101180 | Msa1071660 | 0.813487 | 2.497136e-51 | -8.615850e-47 |
| Msa0103070 | Msa1071660 | 0.804033 | 2.623153e-49 | -8.615850e-47 |
| Msa0108870 | Msa1071660 | 0.803436 | 3.488798e-49 | -8.615850e-47 |
| Msa0115370 | Msa1071660 | 0.805745 | 1.150917e-49 | -8.615850e-47 |
| Msa0610090 | Msa1071660 | 0.819311 | 1.241614e-52 | -8.615850e-47 |
| Msa0610390 | Msa1071660 | 0.800337 | 1.511263e-48 | -8.615850e-47 |
| Msa0615680 | Msa1071660 | 0.831061 | 2.066408e-55 | -8.615850e-47 |
| Msa0616450 | Msa1071660 | 0.805500 | 1.295397e-49 | -8.615850e-47 |
| Msa0617260 | Msa1071660 | 0.806958 | 6.386639e-50 | -8.615850e-47 |
| Msa0619860 | Msa1071660 | 0.800725 | 1.259725e-48 | -8.615850e-47 |
| Msa0620330 | Msa1071660 | 0.817234 | 3.665934e-52 | -8.615850e-47 |
| Msa0633570 | Msa1071660 | 0.804595 | 2.003294e-49 | -8.615850e-47 |
| Msa0644030 | Msa1071660 | 0.830895 | 2.269531e-55 | -8.615850e-47 |
| Msa0658480 | Msa1071660 | 0.835351 | 1.765354e-56 | -8.615850e-47 |
| Msa0662630 | Msa1071660 | 0.822351 | 2.481121e-53 | -8.615850e-47 |
| Msa0687230 | Msa1071660 | 0.860157 | 2.511414e-63 | -8.615850e-47 |
| Msa0694990 | Msa1071660 | 0.812483 | 4.144604e-51 | -8.615850e-47 |
| Msa0704800 | Msa1071660 | 0.806278 | 8.891578e-50 | -8.615850e-47 |
| Msa0706390 | Msa1071660 | 0.815470 | 9.092204e-52 | -8.615850e-47 |
| Msa0707390 | Msa1071660 | 0.815945 | 7.126186e-52 | -8.615850e-47 |
| Msa0726080 | Msa1071660 | 0.809718 | 1.647063e-50 | -8.615850e-47 |
| Msa0742510 | Msa1071660 | 0.803302 | 3.719021e-49 | -8.615850e-47 |
| Msa0743530 | Msa1071660 | 0.814066 | 1.861385e-51 | -8.615850e-47 |
| Msa0744090 | Msa1071660 | 0.807894 | 4.045146e-50 | -8.615850e-47 |
| Msa0744100 | Msa1071660 | 0.804812 | 1.805185e-49 | -8.615850e-47 |
| Msa0756930 | Msa1071660 | 0.849230 | 3.694491e-60 | -8.615850e-47 |
| Msa0758230 | Msa1071660 | 0.803783 | 2.956478e-49 | -8.615850e-47 |
| Msa0771090 | Msa1071660 | 0.820367 | 7.119371e-53 | -8.615850e-47 |
| Msa0774750 | Msa1071660 | 0.804437 | 2.161680e-49 | -8.615850e-47 |
| Msa0776750 | Msa1071660 | 0.844856 | 5.833294e-59 | -8.615850e-47 |
| Msa0781270 | Msa1071660 | 0.803387 | 3.572057e-49 | -8.615850e-47 |
| Msa0788110 | Msa1071660 | 0.805111 | 1.562615e-49 | -8.615850e-47 |
| Msa0794050 | Msa1071660 | 0.831356 | 1.748659e-55 | -8.615850e-47 |
| Msa0818770 | Msa1071660 | 0.901968 | 1.566122e-78 | -8.615850e-47 |
| Msa0822170 | Msa1071660 | 0.826809 | 2.212193e-54 | -8.615850e-47 |
| Msa0825270 | Msa1071660 | 0.811727 | 6.057077e-51 | -8.615850e-47 |
| Msa0825280 | Msa1071660 | 0.807085 | 6.004739e-50 | -8.615850e-47 |
| Msa0826500 | Msa1071660 | 0.835386 | 1.729335e-56 | -8.615850e-47 |
| Msa0836500 | Msa1071660 | 0.823867 | 1.098992e-53 | -8.615850e-47 |
| Msa0126880 | Msa1071660 | 0.806679 | 7.315364e-50 | -8.615850e-47 |
| Msa0127850 | Msa1071660 | 0.823847 | 1.111010e-53 | -8.615850e-47 |
| Msa0131450 | Msa1071660 | 0.803517 | 3.357125e-49 | -8.615850e-47 |
| Msa0134000 | Msa1071660 | 0.804395 | 2.205461e-49 | -8.615850e-47 |
| Msa0136120 | Msa1071660 | 0.815059 | 1.122537e-51 | -8.615850e-47 |
| Msa0145110 | Msa1071660 | 0.801959 | 7.039492e-49 | -8.615850e-47 |
| Msa0174000 | Msa1071660 | 0.824472 | 7.925148e-54 | -8.615850e-47 |
| Msa0181000 | Msa1071660 | 0.807848 | 4.135957e-50 | -8.615850e-47 |
| Msa0192640 | Msa1071660 | 0.803372 | 3.598211e-49 | -8.615850e-47 |
| Msa0193600 | Msa1071660 | 0.807649 | 4.558921e-50 | -8.615850e-47 |
| Msa0198530 | Msa1071660 | 0.806299 | 8.798680e-50 | -8.615850e-47 |
| Msa0202930 | Msa1071660 | 0.824770 | 6.740628e-54 | -8.615850e-47 |
| Msa0212750 | Msa1071660 | -0.815797 | 7.691462e-52 | -8.615850e-47 |
| Msa0221600 | Msa1071660 | 0.802333 | 5.895260e-49 | -8.615850e-47 |
| Msa0229940 | Msa1071660 | 0.815732 | 7.949282e-52 | -8.615850e-47 |
| Msa0370160 | Msa1071660 | -0.813526 | 2.448255e-51 | -8.615850e-47 |
| Msa0384670 | Msa1071660 | 0.874370 | 7.120483e-68 | -8.615850e-47 |
| Msa0384880 | Msa1071660 | 0.808923 | 2.440214e-50 | -8.615850e-47 |
| Msa0419520 | Msa1071660 | 0.803838 | 2.879507e-49 | -8.615850e-47 |
| Msa0423270 | Msa1071660 | 0.815101 | 1.098233e-51 | -8.615850e-47 |
| Msa0434570 | Msa1071660 | 0.856141 | 3.931912e-62 | -8.615850e-47 |
| Msa0434770 | Msa1071660 | 0.865423 | 5.969452e-65 | -8.615850e-47 |
| Msa0436200 | Msa1071660 | 0.821861 | 3.223663e-53 | -8.615850e-47 |
| Msa0437690 | Msa1071660 | -0.812871 | 3.408833e-51 | -8.615850e-47 |
| Msa0439890 | Msa1071660 | 0.843976 | 1.006063e-58 | -8.615850e-47 |
| Msa0442310 | Msa1071660 | 0.815384 | 9.506097e-52 | -8.615850e-47 |
| Msa0443430 | Msa1071660 | 0.804615 | 1.983994e-49 | -8.615850e-47 |
| Msa0450140 | Msa1071660 | 0.808557 | 2.921610e-50 | -8.615850e-47 |
| Msa0461590 | Msa1071660 | 0.809309 | 2.016442e-50 | -8.615850e-47 |
| Msa0469350 | Msa1071660 | 0.807513 | 4.872346e-50 | -8.615850e-47 |
| Msa0472720 | Msa1071660 | 0.816035 | 6.803817e-52 | -8.615850e-47 |
| Msa0474700 | Msa1071660 | 0.814759 | 1.308207e-51 | -8.615850e-47 |
| Msa0478580 | Msa1071660 | 0.868297 | 7.251170e-66 | -8.615850e-47 |
| Msa0980940 | Msa1071660 | 0.812613 | 3.882582e-51 | -8.615850e-47 |
| Msa0981430 | Msa1071660 | 0.815683 | 8.152184e-52 | -8.615850e-47 |
| Msa1010460 | Msa1071660 | 0.821164 | 4.668931e-53 | -8.615850e-47 |
| Msa1025940 | Msa1071660 | 0.817495 | 3.200849e-52 | -8.615850e-47 |
| Msa1033970 | Msa1071660 | 0.814567 | 1.442937e-51 | -8.615850e-47 |
| Msa1038210 | Msa1071660 | -0.822450 | 2.353200e-53 | -8.615850e-47 |
| Msa1071660 | Msa1073400 | 0.813599 | 2.359326e-51 | -8.615850e-47 |
| Msa1071660 | Msa1073830 | 0.842404 | 2.640141e-58 | -8.615850e-47 |
| Msa1071660 | Msa1076600 | 0.805264 | 1.451684e-49 | -8.615850e-47 |
| Msa1071660 | Msa1084500 | -0.811737 | 6.026580e-51 | -8.615850e-47 |
| Msa1071660 | Msa1093330 | 0.815201 | 1.043798e-51 | -8.615850e-47 |
| Msa1071660 | Msa1113590 | 0.816961 | 4.220584e-52 | -8.615850e-47 |
| Msa1071660 | Msa1113880 | 0.800370 | 1.488239e-48 | -8.615850e-47 |
| Msa1071660 | Msa1114040 | 0.858046 | 1.077387e-62 | -8.615850e-47 |
| Msa1071660 | Msa1118710 | 0.972140 | 2.777758e-134 | -8.615850e-47 |
| Msa1071660 | Msa1125790 | -0.823879 | 1.092288e-53 | -8.615850e-47 |
| Msa1071660 | Msa1128330 | 0.820379 | 7.077850e-53 | -8.615850e-47 |
| Msa1071660 | Msa1133630 | 0.801017 | 1.097962e-48 | -8.615850e-47 |
| Msa1071660 | Msa1158770 | 0.984506 | 9.280673e-161 | -8.615850e-47 |
| Msa1071660 | Msa1169720 | 0.803429 | 3.501401e-49 | -8.615850e-47 |
| Msa1071660 | Msa1173900 | 0.856235 | 3.688919e-62 | -8.615850e-47 |
| Msa1071660 | Msa1178370 | 0.857316 | 1.773645e-62 | -8.615850e-47 |
| Msa1071660 | Msa1179980 | 0.806865 | 6.682382e-50 | -8.615850e-47 |
| Msa1071660 | Msa1184370 | 0.805101 | 1.570504e-49 | -8.615850e-47 |
| Msa1071660 | Msa1188560 | 0.815549 | 8.735519e-52 | -8.615850e-47 |
| Msa1071660 | Msa1192850 | 0.806817 | 6.843315e-50 | -8.615850e-47 |
| Msa1071660 | Msa1200320 | 0.819785 | 9.676069e-53 | -8.615850e-47 |
| Msa1071660 | Msa1201830 | 0.822802 | 1.949547e-53 | -8.615850e-47 |
| Msa1071660 | Msa1202580 | 0.811300 | 7.502068e-51 | -8.615850e-47 |
| Msa1071660 | Msa1205850 | 0.815769 | 7.801649e-52 | -8.615850e-47 |
| Msa1071660 | Msa1206650 | 0.835757 | 1.393762e-56 | -8.615850e-47 |
| Msa1071660 | Msa1207730 | 0.825906 | 3.630625e-54 | -8.615850e-47 |
| Msa1071660 | Msa1211830 | 0.833816 | 4.291852e-56 | -8.615850e-47 |
| Msa1071660 | Msa1214320 | 0.816774 | 4.649883e-52 | -8.615850e-47 |
| Msa1071660 | Msa1226610 | 0.833832 | 4.252362e-56 | -8.615850e-47 |
| Msa1071660 | Msa1227690 | 0.815016 | 1.147373e-51 | -8.615850e-47 |
| Msa1071660 | Msa1253810 | 0.823221 | 1.556292e-53 | -8.615850e-47 |
| Msa1071660 | Msa1256770 | 0.818078 | 2.364818e-52 | -8.615850e-47 |
| Msa1071660 | Msa1261070 | 0.810390 | 1.180614e-50 | -8.615850e-47 |
| Msa1071660 | Msa1262960 | 0.800692 | 1.279252e-48 | -8.615850e-47 |
| Msa1071660 | Msa1270620 | 0.815886 | 7.346242e-52 | -8.615850e-47 |
| Msa1071660 | Msa1270690 | 0.811819 | 5.784351e-51 | -8.615850e-47 |
| Msa1071660 | Msa1276970 | 0.827348 | 1.643786e-54 | -8.615850e-47 |
| Msa1071660 | Msa1294840 | 0.802305 | 5.974436e-49 | -8.615850e-47 |
| Msa1071660 | Msa1294960 | 0.810335 | 1.213043e-50 | -8.615850e-47 |
| Msa1071660 | Msa1297800 | 0.806517 | 7.916422e-50 | -8.615850e-47 |
| Msa1071660 | Msa1299700 | 0.827313 | 1.676088e-54 | -8.615850e-47 |
| Msa1071660 | Msa1318620 | 0.834846 | 2.366739e-56 | -8.615850e-47 |
| Msa1071660 | Msa1327490 | 0.800302 | 1.536316e-48 | -8.615850e-47 |
| Msa1071660 | Msa1329450 | 0.813912 | 2.013026e-51 | -8.615850e-47 |
| Msa1071660 | Msa1331250 | 0.803824 | 2.898280e-49 | -8.615850e-47 |
| Msa1071660 | Msa1333970 | 0.800260 | 1.566673e-48 | -8.615850e-47 |
| Msa1071660 | Msa1340040 | -0.801470 | 8.867815e-49 | -8.615850e-47 |
| Msa1071660 | Msa1340830 | 0.800095 | 1.692540e-48 | -8.615850e-47 |
| Msa1071660 | Msa1344310 | 0.826884 | 2.123586e-54 | -8.615850e-47 |
| Msa1071660 | Msa1373880 | 0.810836 | 9.453801e-51 | -8.615850e-47 |
| Msa1071660 | Msa1380970 | 0.805880 | 1.078255e-49 | -8.615850e-47 |
| Msa1071660 | Msa1389680 | 0.817311 | 3.521274e-52 | -8.615850e-47 |
| Msa1071660 | Msa1418960 | -0.822503 | 2.287531e-53 | -8.615850e-47 |
| Msa1071660 | Msa1421900 | 0.806363 | 8.530308e-50 | -8.615850e-47 |
| Msa1071660 | Msa1432480 | 0.808457 | 3.069035e-50 | -8.615850e-47 |
| Msa1071660 | Msa1433600 | 0.807098 | 5.967990e-50 | -8.615850e-47 |
| Msa1071660 | Msa1435770 | 0.813342 | 2.687040e-51 | -8.615850e-47 |
| Msa1071660 | Msa1445940 | 0.825577 | 4.344728e-54 | -8.615850e-47 |
| Msa1071660 | Msa1459960 | 0.826251 | 3.005494e-54 | -8.615850e-47 |
| Msa0244980 | Msa1071660 | 0.801303 | 9.596767e-49 | -8.615850e-47 |
| Msa0262480 | Msa1071660 | 0.802681 | 4.999658e-49 | -8.615850e-47 |
| Msa0267870 | Msa1071660 | 0.807876 | 4.080225e-50 | -8.615850e-47 |
| Msa0269470 | Msa1071660 | 0.806958 | 6.388666e-50 | -8.615850e-47 |
| Msa0273650 | Msa1071660 | 0.805099 | 1.572126e-49 | -8.615850e-47 |
| Msa0284450 | Msa1071660 | 0.802888 | 4.529343e-49 | -8.615850e-47 |
| Msa0313930 | Msa1071660 | 0.800716 | 1.264954e-48 | -8.615850e-47 |
| Msa0342290 | Msa1071660 | 0.806488 | 8.028599e-50 | -8.615850e-47 |
| Msa0343190 | Msa1071660 | 0.827910 | 1.204943e-54 | -8.615850e-47 |
| Msa0358120 | Msa1071660 | 0.812653 | 3.805328e-51 | -8.615850e-47 |
| Msa0363060 | Msa1071660 | 0.821867 | 3.212861e-53 | -8.615850e-47 |
| Msa0484290 | Msa1071660 | 0.821052 | 4.954984e-53 | -8.615850e-47 |
| Msa0509950 | Msa1071660 | -0.808526 | 2.966318e-50 | -8.615850e-47 |
| Msa0511770 | Msa1071660 | 0.841268 | 5.268258e-58 | -8.615850e-47 |
| Msa0514610 | Msa1071660 | 0.816901 | 4.354101e-52 | -8.615850e-47 |
| Msa0517640 | Msa1071660 | 0.809924 | 1.487994e-50 | -8.615850e-47 |
| Msa0524590 | Msa1071660 | 0.802237 | 6.170215e-49 | -8.615850e-47 |
| Msa0537530 | Msa1071660 | 0.808393 | 3.165558e-50 | -8.615850e-47 |
| Msa0546570 | Msa1071660 | 0.814912 | 1.209528e-51 | -8.615850e-47 |
| Msa0547990 | Msa1071660 | 0.835918 | 1.268614e-56 | -8.615850e-47 |
| Msa0550540 | Msa1071660 | 0.811997 | 5.291478e-51 | -8.615850e-47 |
| Msa0550570 | Msa1071660 | 0.827268 | 1.718295e-54 | -8.615850e-47 |
| Msa0576890 | Msa1071660 | 0.802764 | 4.805938e-49 | -8.615850e-47 |
| Msa0578090 | Msa1071660 | 0.812260 | 4.637282e-51 | -8.615850e-47 |
| Msa0583500 | Msa1071660 | 0.836561 | 8.705010e-57 | -8.615850e-47 |
| Msa0586850 | Msa1071660 | 0.810504 | 1.115625e-50 | -8.615850e-47 |
| Msa0593700 | Msa1071660 | 0.815527 | 8.831920e-52 | -8.615850e-47 |
| Msa0599900 | Msa1071660 | 0.802529 | 5.371701e-49 | -8.615850e-47 |
| Msa0846230 | Msa1071660 | 0.804285 | 2.324479e-49 | -8.615850e-47 |
| Msa0851470 | Msa1071660 | 0.803650 | 3.149758e-49 | -8.615850e-47 |
| Msa0858440 | Msa1071660 | 0.807693 | 4.461688e-50 | -8.615850e-47 |
| Msa0881580 | Msa1071660 | 0.810081 | 1.376174e-50 | -8.615850e-47 |
| Msa0888940 | Msa1071660 | 0.810781 | 9.715555e-51 | -8.615850e-47 |
| Msa0901110 | Msa1071660 | 0.813600 | 2.358483e-51 | -8.615850e-47 |
| Msa0905990 | Msa1071660 | 0.812715 | 3.687167e-51 | -8.615850e-47 |
| Msa0921870 | Msa1071660 | 0.808206 | 3.469960e-50 | -8.615850e-47 |
| Msa0944200 | Msa1071660 | 0.800254 | 1.571303e-48 | -8.615850e-47 |
| Msa0957450 | Msa1071660 | -0.807145 | 5.830359e-50 | -8.615850e-47 |
| Msa0963020 | Msa1071660 | 0.803405 | 3.541180e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1071660 | MtrunA17_Chr7g0253451 | 90.110 | 91 | 1 | 1 | 186 | 276 | 156 | 238 | 1.70e-26 | 103 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 49 sgRNAs with CRISPR-Local
Find 130 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGACAAGGAGAAGAAGAAAA+AGG | 0.262656 | 7_2:+68475733 | Msa1071660:CDS |
| GAAAGACAAGGAGAAGAAAA+AGG | 0.271556 | 7_2:+68475907 | Msa1071660:CDS |
| AGATAAAGATGGGGAGAAAA+AGG | 0.318758 | 7_2:+68475628 | Msa1071660:CDS |
| GGACAAGAATGAAGATGATA+AGG | 0.365593 | 7_2:+68475937 | Msa1071660:CDS |
| AGCTTCTGTTTCAGCTTACT+AGG | 0.366926 | 7_2:-68476199 | None:intergenic |
| GAAGAGAAGAAGAAGAAATC+TGG | 0.380214 | 7_2:+68476157 | Msa1071660:CDS |
| TTTCAGCTTACTAGGATCAT+TGG | 0.393959 | 7_2:-68476191 | None:intergenic |
| TGCAAAGTTAGAAGCACTCT+TGG | 0.412053 | 7_2:+68476234 | Msa1071660:CDS |
| CAGATTAAAGAAGGTGAAGA+TGG | 0.424543 | 7_2:+68476280 | Msa1071660:CDS |
| GGAGAAGAAGAAGGAAAAGA+AGG | 0.441872 | 7_2:+68475664 | Msa1071660:CDS |
| AAGAGGGCAAAGTATCTGTA+AGG | 0.456458 | 7_2:+68476047 | Msa1071660:CDS |
| CATAAGGATGAAGATAAAGA+TGG | 0.473869 | 7_2:+68475617 | Msa1071660:CDS |
| TGGTGATGAAAAGAAGGATA+AGG | 0.475376 | 7_2:+68475811 | Msa1071660:CDS |
| GAAGGATAAGGAGAAGAAGA+AGG | 0.480636 | 7_2:+68475655 | Msa1071660:CDS |
| AAGGAGAAGGGAAAAGATGA+TGG | 0.481339 | 7_2:+68475854 | Msa1071660:CDS |
| GGAGAAGGAAAATGAGGGCA+AGG | 0.484443 | 7_2:+68475703 | Msa1071660:CDS |
| ATAAGGATGAAGATAAAGAT+GGG | 0.484895 | 7_2:+68475618 | Msa1071660:CDS |
| AGAGAAAGAGAAGAAACATA+AGG | 0.494698 | 7_2:+68475601 | Msa1071660:CDS |
| AATGTCAAGGGTGAAGAAGA+TGG | 0.503630 | 7_2:+68475791 | Msa1071660:CDS |
| AAAGAAGATGATAAGAAAGA+AGG | 0.504770 | 7_2:+68476103 | Msa1071660:CDS |
| GAGGAGGATGAGAAAGAAGA+GGG | 0.511401 | 7_2:+68476031 | Msa1071660:CDS |
| CAAAACTGATGTAGAGGAGA+AGG | 0.513882 | 7_2:+68475688 | Msa1071660:CDS |
| AGAAGCACTCTTGGAAAAGA+AGG | 0.514342 | 7_2:+68476243 | Msa1071660:CDS |
| GATAAGGGTGAGGATGTTGA+TGG | 0.514784 | 7_2:+68475953 | Msa1071660:CDS |
| GACAAGAATGAAGATGATAA+GGG | 0.515351 | 7_2:+68475938 | Msa1071660:CDS |
| GAAGAAGAAGAAATCTGGAA+AGG | 0.525495 | 7_2:+68476162 | Msa1071660:CDS |
| AGAAGATGGTGATGAAAAGA+AGG | 0.535142 | 7_2:+68475805 | Msa1071660:CDS |
| AAAAGAAGGCTGATCTAGAA+AGG | 0.535925 | 7_2:+68476257 | Msa1071660:CDS |
| CTAGAAAGGCAGATTAAAGA+AGG | 0.541104 | 7_2:+68476271 | Msa1071660:CDS |
| ATCCTCAATCTTGATTTGAG+TGG | 0.542150 | 7_2:-68475513 | None:intergenic |
| AAGATTGAGGATAAATCTGC+AGG | 0.542679 | 7_2:+68475524 | Msa1071660:CDS |
| AAATGAGGGCAAGGATAAGA+AGG | 0.544812 | 7_2:+68475712 | Msa1071660:CDS |
| AGGTGGTGTAAAAGAAGATA+AGG | 0.558774 | 7_2:+68475544 | Msa1071660:CDS |
| TGTAGAGGAGAAGGAAAATG+AGG | 0.559175 | 7_2:+68475697 | Msa1071660:CDS |
| GAAGGACAAAACTGATGTAG+AGG | 0.562348 | 7_2:+68475682 | Msa1071660:CDS |
| AAAGATGATGGAGACAAAGA+TGG | 0.562750 | 7_2:+68475866 | Msa1071660:CDS |
| GAATGAAGATGATAAGGGTG+AGG | 0.565457 | 7_2:+68475943 | Msa1071660:CDS |
| GGAGGAGGATGAGAAAGAAG+AGG | 0.565630 | 7_2:+68476030 | Msa1071660:CDS |
| CTCCACTCAAATCAAGATTG+AGG | 0.573595 | 7_2:+68475511 | Msa1071660:CDS |
| GTAGAGGAGAAGGAAAATGA+GGG | 0.590377 | 7_2:+68475698 | Msa1071660:CDS |
| AGTTGATGTAGAGAATGTCA+AGG | 0.614970 | 7_2:+68475778 | Msa1071660:CDS |
| TAAGGATGAAGATAAAGATG+GGG | 0.625024 | 7_2:+68475619 | Msa1071660:CDS |
| AGGTCAAGATATTAACGTGA+AGG | 0.638283 | 7_2:+68476303 | Msa1071660:CDS |
| AGAGGGCAAAGTATCTGTAA+GGG | 0.640140 | 7_2:+68476048 | Msa1071660:CDS |
| GTTGATGTAGAGAATGTCAA+GGG | 0.641616 | 7_2:+68475779 | Msa1071660:CDS |
| ATTAAAGAAGGTGAAGATGG+AGG | 0.660144 | 7_2:+68476283 | Msa1071660:CDS |
| GGGCAAGGATAAGAAGGACA+AGG | 0.662721 | 7_2:+68475718 | Msa1071660:CDS |
| ATTGAGGATAAATCTGCAGG+TGG | 0.690052 | 7_2:+68475527 | Msa1071660:CDS |
| GAAGAAATCTAAGAAAGACA+AGG | 0.697798 | 7_2:+68475895 | Msa1071660:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAGTAAGAAAAAGAAGAATA+AGG | + | chr7_2:68475976-68475995 | Msa1071660:CDS | 20.0% |
| !! | AAGTAAGAAAAAGAAGAATA+AGG | + | chr7_2:68475976-68475995 | Msa1071660:CDS | 20.0% |
| ! | ATAAGGATGAAGATAAAGAT+GGG | + | chr7_2:68475618-68475637 | Msa1071660:CDS | 25.0% |
| ! | GAAAAAGAAAAAGGAAAAGA+AGG | + | chr7_2:68475835-68475854 | Msa1071660:CDS | 25.0% |
| ! | GAAAAAGAAGGATAAAAATG+AGG | + | chr7_2:68476009-68476028 | Msa1071660:CDS | 25.0% |
| ! | AAAGAAGATGATAAGAAAGA+AGG | + | chr7_2:68476103-68476122 | Msa1071660:CDS | 25.0% |
| ! | ATAAGGATGAAGATAAAGAT+GGG | + | chr7_2:68475618-68475637 | Msa1071660:CDS | 25.0% |
| ! | GAAAAAGAAAAAGGAAAAGA+AGG | + | chr7_2:68475835-68475854 | Msa1071660:CDS | 25.0% |
| ! | GAAAAAGAAGGATAAAAATG+AGG | + | chr7_2:68476009-68476028 | Msa1071660:CDS | 25.0% |
| ! | AAAGAAGATGATAAGAAAGA+AGG | + | chr7_2:68476103-68476122 | Msa1071660:CDS | 25.0% |
| AGAGAAAGAGAAGAAACATA+AGG | + | chr7_2:68475601-68475620 | Msa1071660:CDS | 30.0% | |
| CATAAGGATGAAGATAAAGA+TGG | + | chr7_2:68475617-68475636 | Msa1071660:CDS | 30.0% | |
| TAAGGATGAAGATAAAGATG+GGG | + | chr7_2:68475619-68475638 | Msa1071660:CDS | 30.0% | |
| GAAAAAGGAAAAGAAGGATA+AGG | + | chr7_2:68475643-68475662 | Msa1071660:CDS | 30.0% | |
| GAAGAAGAAAAAGGAAAAGA+AGG | + | chr7_2:68475742-68475761 | Msa1071660:CDS | 30.0% | |
| GGATAAGGAGAAAAAGAAAA+AGG | + | chr7_2:68475826-68475845 | Msa1071660:CDS | 30.0% | |
| AAAAAGGAAAAGAAGGAGAA+GGG | + | chr7_2:68475842-68475861 | Msa1071660:CDS | 30.0% | |
| GAAGAAATCTAAGAAAGACA+AGG | + | chr7_2:68475895-68475914 | Msa1071660:CDS | 30.0% | |
| GACAAGAATGAAGATGATAA+GGG | + | chr7_2:68475938-68475957 | Msa1071660:CDS | 30.0% | |
| GGATAAGAAAGAGAAAAAGA+AGG | + | chr7_2:68475997-68476016 | Msa1071660:CDS | 30.0% | |
| AAAGAAGGATAAAAATGAGG+AGG | + | chr7_2:68476012-68476031 | Msa1071660:CDS | 30.0% | |
| !! | ATCTTCTTTTTCACATTTCG+CGG | - | chr7_2:68476092-68476111 | None:intergenic | 30.0% |
| GAAGAAGAAAAAAGAAGACA+AGG | + | chr7_2:68476135-68476154 | Msa1071660:CDS | 30.0% | |
| AGAGAAAGAGAAGAAACATA+AGG | + | chr7_2:68475601-68475620 | Msa1071660:CDS | 30.0% | |
| CATAAGGATGAAGATAAAGA+TGG | + | chr7_2:68475617-68475636 | Msa1071660:CDS | 30.0% | |
| TAAGGATGAAGATAAAGATG+GGG | + | chr7_2:68475619-68475638 | Msa1071660:CDS | 30.0% | |
| GAAAAAGGAAAAGAAGGATA+AGG | + | chr7_2:68475643-68475662 | Msa1071660:CDS | 30.0% | |
| GAAGAAGAAAAAGGAAAAGA+AGG | + | chr7_2:68475742-68475761 | Msa1071660:CDS | 30.0% | |
| GGATAAGGAGAAAAAGAAAA+AGG | + | chr7_2:68475826-68475845 | Msa1071660:CDS | 30.0% | |
| AAAAAGGAAAAGAAGGAGAA+GGG | + | chr7_2:68475842-68475861 | Msa1071660:CDS | 30.0% | |
| GAAGAAATCTAAGAAAGACA+AGG | + | chr7_2:68475895-68475914 | Msa1071660:CDS | 30.0% | |
| GACAAGAATGAAGATGATAA+GGG | + | chr7_2:68475938-68475957 | Msa1071660:CDS | 30.0% | |
| GGATAAGAAAGAGAAAAAGA+AGG | + | chr7_2:68475997-68476016 | Msa1071660:CDS | 30.0% | |
| AAAGAAGGATAAAAATGAGG+AGG | + | chr7_2:68476012-68476031 | Msa1071660:CDS | 30.0% | |
| !! | ATCTTCTTTTTCACATTTCG+CGG | - | chr7_2:68476092-68476111 | None:intergenic | 30.0% |
| GAAGAAGAAAAAAGAAGACA+AGG | + | chr7_2:68476135-68476154 | Msa1071660:CDS | 30.0% | |
| ! | ATCCTCAATCTTGATTTGAG+TGG | - | chr7_2:68475516-68475535 | None:intergenic | 35.0% |
| AAGATTGAGGATAAATCTGC+AGG | + | chr7_2:68475524-68475543 | Msa1071660:CDS | 35.0% | |
| AGGTGGTGTAAAAGAAGATA+AGG | + | chr7_2:68475544-68475563 | Msa1071660:CDS | 35.0% | |
| GGTTGAGATAGAAAAAGATC+TGG | + | chr7_2:68475565-68475584 | Msa1071660:CDS | 35.0% | |
| AGATAAAGATGGGGAGAAAA+AGG | + | chr7_2:68475628-68475647 | Msa1071660:CDS | 35.0% | |
| ! | AGTTGATGTAGAGAATGTCA+AGG | + | chr7_2:68475778-68475797 | Msa1071660:CDS | 35.0% |
| GTTGATGTAGAGAATGTCAA+GGG | + | chr7_2:68475779-68475798 | Msa1071660:CDS | 35.0% | |
| ! | AGAAGATGGTGATGAAAAGA+AGG | + | chr7_2:68475805-68475824 | Msa1071660:CDS | 35.0% |
| ! | TGGTGATGAAAAGAAGGATA+AGG | + | chr7_2:68475811-68475830 | Msa1071660:CDS | 35.0% |
| GAAAAAGGAAAAGAAGGAGA+AGG | + | chr7_2:68475841-68475860 | Msa1071660:CDS | 35.0% | |
| !! | AAAGATGATGGAGACAAAGA+TGG | + | chr7_2:68475866-68475885 | Msa1071660:CDS | 35.0% |
| GAAAGACAAGGAGAAGAAAA+AGG | + | chr7_2:68475907-68475926 | Msa1071660:CDS | 35.0% | |
| GGAGAAGAAAAAGGAAAAGA+AGG | + | chr7_2:68475916-68475935 | Msa1071660:CDS | 35.0% | |
| GGACAAGAATGAAGATGATA+AGG | + | chr7_2:68475937-68475956 | Msa1071660:CDS | 35.0% | |
| GAAGAGAAGAAGAAGAAATC+TGG | + | chr7_2:68476157-68476176 | Msa1071660:CDS | 35.0% | |
| GAAGAAGAAGAAATCTGGAA+AGG | + | chr7_2:68476162-68476181 | Msa1071660:CDS | 35.0% | |
| TTTCAGCTTACTAGGATCAT+TGG | - | chr7_2:68476194-68476213 | None:intergenic | 35.0% | |
| AAAAGAAGGCTGATCTAGAA+AGG | + | chr7_2:68476257-68476276 | Msa1071660:CDS | 35.0% | |
| CTAGAAAGGCAGATTAAAGA+AGG | + | chr7_2:68476271-68476290 | Msa1071660:CDS | 35.0% | |
| CAGATTAAAGAAGGTGAAGA+TGG | + | chr7_2:68476280-68476299 | Msa1071660:CDS | 35.0% | |
| ATTAAAGAAGGTGAAGATGG+AGG | + | chr7_2:68476283-68476302 | Msa1071660:CDS | 35.0% | |
| AGGTCAAGATATTAACGTGA+AGG | + | chr7_2:68476303-68476322 | Msa1071660:CDS | 35.0% | |
| ! | ATCCTCAATCTTGATTTGAG+TGG | - | chr7_2:68475516-68475535 | None:intergenic | 35.0% |
| AAGATTGAGGATAAATCTGC+AGG | + | chr7_2:68475524-68475543 | Msa1071660:CDS | 35.0% | |
| AGGTGGTGTAAAAGAAGATA+AGG | + | chr7_2:68475544-68475563 | Msa1071660:CDS | 35.0% | |
| GGTTGAGATAGAAAAAGATC+TGG | + | chr7_2:68475565-68475584 | Msa1071660:CDS | 35.0% | |
| AGATAAAGATGGGGAGAAAA+AGG | + | chr7_2:68475628-68475647 | Msa1071660:CDS | 35.0% | |
| ! | AGTTGATGTAGAGAATGTCA+AGG | + | chr7_2:68475778-68475797 | Msa1071660:CDS | 35.0% |
| GTTGATGTAGAGAATGTCAA+GGG | + | chr7_2:68475779-68475798 | Msa1071660:CDS | 35.0% | |
| ! | AGAAGATGGTGATGAAAAGA+AGG | + | chr7_2:68475805-68475824 | Msa1071660:CDS | 35.0% |
| ! | TGGTGATGAAAAGAAGGATA+AGG | + | chr7_2:68475811-68475830 | Msa1071660:CDS | 35.0% |
| GAAAAAGGAAAAGAAGGAGA+AGG | + | chr7_2:68475841-68475860 | Msa1071660:CDS | 35.0% | |
| !! | AAAGATGATGGAGACAAAGA+TGG | + | chr7_2:68475866-68475885 | Msa1071660:CDS | 35.0% |
| GAAAGACAAGGAGAAGAAAA+AGG | + | chr7_2:68475907-68475926 | Msa1071660:CDS | 35.0% | |
| GGAGAAGAAAAAGGAAAAGA+AGG | + | chr7_2:68475916-68475935 | Msa1071660:CDS | 35.0% | |
| GGACAAGAATGAAGATGATA+AGG | + | chr7_2:68475937-68475956 | Msa1071660:CDS | 35.0% | |
| GAAGAGAAGAAGAAGAAATC+TGG | + | chr7_2:68476157-68476176 | Msa1071660:CDS | 35.0% | |
| GAAGAAGAAGAAATCTGGAA+AGG | + | chr7_2:68476162-68476181 | Msa1071660:CDS | 35.0% | |
| TTTCAGCTTACTAGGATCAT+TGG | - | chr7_2:68476194-68476213 | None:intergenic | 35.0% | |
| AAAAGAAGGCTGATCTAGAA+AGG | + | chr7_2:68476257-68476276 | Msa1071660:CDS | 35.0% | |
| CTAGAAAGGCAGATTAAAGA+AGG | + | chr7_2:68476271-68476290 | Msa1071660:CDS | 35.0% | |
| CAGATTAAAGAAGGTGAAGA+TGG | + | chr7_2:68476280-68476299 | Msa1071660:CDS | 35.0% | |
| ATTAAAGAAGGTGAAGATGG+AGG | + | chr7_2:68476283-68476302 | Msa1071660:CDS | 35.0% | |
| AGGTCAAGATATTAACGTGA+AGG | + | chr7_2:68476303-68476322 | Msa1071660:CDS | 35.0% | |
| CTCCACTCAAATCAAGATTG+AGG | + | chr7_2:68475511-68475530 | Msa1071660:CDS | 40.0% | |
| ATTGAGGATAAATCTGCAGG+TGG | + | chr7_2:68475527-68475546 | Msa1071660:CDS | 40.0% | |
| TGGGGAGAAAAAGGAAAAGA+AGG | + | chr7_2:68475637-68475656 | Msa1071660:CDS | 40.0% | |
| GAAGGATAAGGAGAAGAAGA+AGG | + | chr7_2:68475655-68475674 | Msa1071660:CDS | 40.0% | |
| GGAGAAGAAGAAGGAAAAGA+AGG | + | chr7_2:68475664-68475683 | Msa1071660:CDS | 40.0% | |
| GAAGGACAAAACTGATGTAG+AGG | + | chr7_2:68475682-68475701 | Msa1071660:CDS | 40.0% | |
| CAAAACTGATGTAGAGGAGA+AGG | + | chr7_2:68475688-68475707 | Msa1071660:CDS | 40.0% | |
| TGTAGAGGAGAAGGAAAATG+AGG | + | chr7_2:68475697-68475716 | Msa1071660:CDS | 40.0% | |
| GTAGAGGAGAAGGAAAATGA+GGG | + | chr7_2:68475698-68475717 | Msa1071660:CDS | 40.0% | |
| AAATGAGGGCAAGGATAAGA+AGG | + | chr7_2:68475712-68475731 | Msa1071660:CDS | 40.0% | |
| GGACAAGGAGAAGAAGAAAA+AGG | + | chr7_2:68475733-68475752 | Msa1071660:CDS | 40.0% | |
| AATGTCAAGGGTGAAGAAGA+TGG | + | chr7_2:68475791-68475810 | Msa1071660:CDS | 40.0% | |
| AAGGAGAAGGGAAAAGATGA+TGG | + | chr7_2:68475854-68475873 | Msa1071660:CDS | 40.0% | |
| GAATGAAGATGATAAGGGTG+AGG | + | chr7_2:68475943-68475962 | Msa1071660:CDS | 40.0% | |
| GAAGGATAAAAATGAGGAGG+AGG | + | chr7_2:68476015-68476034 | Msa1071660:CDS | 40.0% | |
| ! | AAGAGGGCAAAGTATCTGTA+AGG | + | chr7_2:68476047-68476066 | Msa1071660:CDS | 40.0% |
| ! | AGAGGGCAAAGTATCTGTAA+GGG | + | chr7_2:68476048-68476067 | Msa1071660:CDS | 40.0% |
| AGCTTCTGTTTCAGCTTACT+AGG | - | chr7_2:68476202-68476221 | None:intergenic | 40.0% | |
| !! | TGCAAAGTTAGAAGCACTCT+TGG | + | chr7_2:68476234-68476253 | Msa1071660:CDS | 40.0% |
| !! | AGAAGCACTCTTGGAAAAGA+AGG | + | chr7_2:68476243-68476262 | Msa1071660:CDS | 40.0% |
| CTCCACTCAAATCAAGATTG+AGG | + | chr7_2:68475511-68475530 | Msa1071660:CDS | 40.0% | |
| ATTGAGGATAAATCTGCAGG+TGG | + | chr7_2:68475527-68475546 | Msa1071660:CDS | 40.0% | |
| TGGGGAGAAAAAGGAAAAGA+AGG | + | chr7_2:68475637-68475656 | Msa1071660:CDS | 40.0% | |
| GAAGGATAAGGAGAAGAAGA+AGG | + | chr7_2:68475655-68475674 | Msa1071660:CDS | 40.0% | |
| GGAGAAGAAGAAGGAAAAGA+AGG | + | chr7_2:68475664-68475683 | Msa1071660:CDS | 40.0% | |
| GAAGGACAAAACTGATGTAG+AGG | + | chr7_2:68475682-68475701 | Msa1071660:CDS | 40.0% | |
| CAAAACTGATGTAGAGGAGA+AGG | + | chr7_2:68475688-68475707 | Msa1071660:CDS | 40.0% | |
| TGTAGAGGAGAAGGAAAATG+AGG | + | chr7_2:68475697-68475716 | Msa1071660:CDS | 40.0% | |
| GTAGAGGAGAAGGAAAATGA+GGG | + | chr7_2:68475698-68475717 | Msa1071660:CDS | 40.0% | |
| AAATGAGGGCAAGGATAAGA+AGG | + | chr7_2:68475712-68475731 | Msa1071660:CDS | 40.0% | |
| GGACAAGGAGAAGAAGAAAA+AGG | + | chr7_2:68475733-68475752 | Msa1071660:CDS | 40.0% | |
| AATGTCAAGGGTGAAGAAGA+TGG | + | chr7_2:68475791-68475810 | Msa1071660:CDS | 40.0% | |
| AAGGAGAAGGGAAAAGATGA+TGG | + | chr7_2:68475854-68475873 | Msa1071660:CDS | 40.0% | |
| GAATGAAGATGATAAGGGTG+AGG | + | chr7_2:68475943-68475962 | Msa1071660:CDS | 40.0% | |
| GAAGGATAAAAATGAGGAGG+AGG | + | chr7_2:68476015-68476034 | Msa1071660:CDS | 40.0% | |
| ! | AAGAGGGCAAAGTATCTGTA+AGG | + | chr7_2:68476047-68476066 | Msa1071660:CDS | 40.0% |
| ! | AGAGGGCAAAGTATCTGTAA+GGG | + | chr7_2:68476048-68476067 | Msa1071660:CDS | 40.0% |
| AGCTTCTGTTTCAGCTTACT+AGG | - | chr7_2:68476202-68476221 | None:intergenic | 40.0% | |
| !! | TGCAAAGTTAGAAGCACTCT+TGG | + | chr7_2:68476234-68476253 | Msa1071660:CDS | 40.0% |
| !! | AGAAGCACTCTTGGAAAAGA+AGG | + | chr7_2:68476243-68476262 | Msa1071660:CDS | 40.0% |
| GATAAGGGTGAGGATGTTGA+TGG | + | chr7_2:68475953-68475972 | Msa1071660:CDS | 45.0% | |
| GAGGAGGATGAGAAAGAAGA+GGG | + | chr7_2:68476031-68476050 | Msa1071660:CDS | 45.0% | |
| GATAAGGGTGAGGATGTTGA+TGG | + | chr7_2:68475953-68475972 | Msa1071660:CDS | 45.0% | |
| GAGGAGGATGAGAAAGAAGA+GGG | + | chr7_2:68476031-68476050 | Msa1071660:CDS | 45.0% | |
| GGAGAAGGAAAATGAGGGCA+AGG | + | chr7_2:68475703-68475722 | Msa1071660:CDS | 50.0% | |
| GGGCAAGGATAAGAAGGACA+AGG | + | chr7_2:68475718-68475737 | Msa1071660:CDS | 50.0% | |
| GGAGGAGGATGAGAAAGAAG+AGG | + | chr7_2:68476030-68476049 | Msa1071660:CDS | 50.0% | |
| GGAGAAGGAAAATGAGGGCA+AGG | + | chr7_2:68475703-68475722 | Msa1071660:CDS | 50.0% | |
| GGGCAAGGATAAGAAGGACA+AGG | + | chr7_2:68475718-68475737 | Msa1071660:CDS | 50.0% | |
| GGAGGAGGATGAGAAAGAAG+AGG | + | chr7_2:68476030-68476049 | Msa1071660:CDS | 50.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr7_2 | gene | 68475503 | 68476333 | 68475503 | ID=Msa1071660;Name=Msa1071660 |
| chr7_2 | mRNA | 68475503 | 68476333 | 68475503 | ID=Msa1071660-mRNA-1;Parent=Msa1071660;Name=Msa1071660-mRNA-1;_AED=0.15;_eAED=0.19;_QI=0|-1|0|1|-1|1|1|0|276 |
| chr7_2 | exon | 68475503 | 68476333 | 68475503 | ID=Msa1071660-mRNA-1:exon:14980;Parent=Msa1071660-mRNA-1 |
| chr7_2 | CDS | 68475503 | 68476333 | 68475503 | ID=Msa1071660-mRNA-1:cds;Parent=Msa1071660-mRNA-1 |
| Gene Sequence |
| Protein sequence |
