Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791230 | XP_013463045.1 | 90.500 | 200 | 19 | 0 | 1 | 200 | 1 | 200 | 1.41e-121 | 370 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791230 | sp|B5X582|TWIH_ARATH | 40.881 | 159 | 83 | 4 | 47 | 200 | 59 | 211 | 2.64e-27 | 112 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791230 | A0A072VFY7 | 90.500 | 200 | 19 | 0 | 1 | 200 | 1 | 200 | 6.74e-122 | 370 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0017510 | Msa0791230 | 0.808178 | 3.518904e-50 | -8.615850e-47 |
| Msa0028640 | Msa0791230 | 0.801025 | 1.093670e-48 | -8.615850e-47 |
| Msa0050390 | Msa0791230 | 0.800306 | 1.533101e-48 | -8.615850e-47 |
| Msa0116770 | Msa0791230 | 0.801507 | 8.716834e-49 | -8.615850e-47 |
| Msa0698920 | Msa0791230 | 0.802306 | 5.973679e-49 | -8.615850e-47 |
| Msa0743720 | Msa0791230 | 0.815859 | 7.448039e-52 | -8.615850e-47 |
| Msa0791230 | Msa0813740 | 0.801249 | 9.843075e-49 | -8.615850e-47 |
| Msa0791230 | Msa0880140 | 0.805642 | 1.209379e-49 | -8.615850e-47 |
| Msa0791230 | Msa0884470 | 0.809295 | 2.030221e-50 | -8.615850e-47 |
| Msa0791230 | Msa0980090 | 0.811620 | 6.392292e-51 | -8.615850e-47 |
| Msa0791230 | Msa1111630 | 0.804909 | 1.722856e-49 | -8.615850e-47 |
| Msa0791230 | Msa1244250 | 0.810134 | 1.340606e-50 | -8.615850e-47 |
| Msa0791230 | Msa1302830 | 0.803478 | 3.420108e-49 | -8.615850e-47 |
| Msa0791230 | Msa1351620 | 0.806166 | 9.386855e-50 | -8.615850e-47 |
| Msa0157290 | Msa0791230 | 0.808851 | 2.527961e-50 | -8.615850e-47 |
| Msa0165210 | Msa0791230 | 0.809079 | 2.259100e-50 | -8.615850e-47 |
| Msa0188140 | Msa0791230 | 0.840140 | 1.040251e-57 | -8.615850e-47 |
| Msa0395960 | Msa0791230 | 0.819850 | 9.352468e-53 | -8.615850e-47 |
| Msa0419820 | Msa0791230 | 0.805950 | 1.042406e-49 | -8.615850e-47 |
| Msa0443500 | Msa0791230 | 0.809022 | 2.323542e-50 | -8.615850e-47 |
| Msa0466390 | Msa0791230 | 0.814124 | 1.807263e-51 | -8.615850e-47 |
| Msa0468160 | Msa0791230 | 0.807808 | 4.218308e-50 | -8.615850e-47 |
| Msa0241640 | Msa0791230 | 0.872368 | 3.356899e-67 | -8.615850e-47 |
| Msa0279700 | Msa0791230 | 0.807885 | 4.061640e-50 | -8.615850e-47 |
| Msa0279790 | Msa0791230 | 0.846216 | 2.496934e-59 | -8.615850e-47 |
| Msa0322570 | Msa0791230 | 0.846371 | 2.265898e-59 | -8.615850e-47 |
| Msa0350990 | Msa0791230 | 0.816499 | 5.358912e-52 | -8.615850e-47 |
| Msa0351030 | Msa0791230 | 0.812797 | 3.538567e-51 | -8.615850e-47 |
| Msa0358170 | Msa0791230 | 0.831487 | 1.623217e-55 | -8.615850e-47 |
| Msa0576690 | Msa0791230 | 0.822841 | 1.908493e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791230 | MtrunA17_Chr2g0293211 | 90.500 | 200 | 19 | 0 | 1 | 200 | 1 | 200 | 1.30e-125 | 370 |
| Msa0791230 | MtrunA17_Chr2g0293321 | 41.905 | 105 | 45 | 4 | 91 | 193 | 42 | 132 | 2.73e-16 | 76.6 |
| Msa0791230 | MtrunA17_Chr5g0448701 | 42.574 | 101 | 43 | 4 | 94 | 193 | 43 | 129 | 1.00e-14 | 72.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0791230 | AT1G30680.1 | 40.881 | 159 | 83 | 4 | 47 | 200 | 59 | 211 | 2.69e-28 | 112 |
| Msa0791230 | AT1G30660.3 | 42.857 | 119 | 59 | 4 | 95 | 212 | 28 | 138 | 6.59e-20 | 86.7 |
| Msa0791230 | AT1G30660.2 | 42.857 | 119 | 59 | 4 | 95 | 212 | 31 | 141 | 6.88e-20 | 86.7 |
| Msa0791230 | AT1G30660.1 | 42.857 | 119 | 59 | 4 | 95 | 212 | 38 | 148 | 7.94e-20 | 86.7 |
Find 46 sgRNAs with CRISPR-Local
Find 314 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTAAAAGCAGGGACAAAATT+TGG | 0.198950 | 5_3:-2119766 | None:intergenic |
| CCTTTACCGCTTAAAACTAA+TGG | 0.267165 | 5_3:+2117710 | Msa0791230:CDS |
| TTAAGTTCTCTTTCTTTCAT+AGG | 0.312965 | 5_3:-2119688 | None:intergenic |
| TATGGCAGGGTGAGAGTGTT+TGG | 0.320611 | 5_3:-2117437 | None:intergenic |
| TACAAAGTGGTTCTAGTTGC+AGG | 0.323714 | 5_3:-2119720 | None:intergenic |
| CTTTACCGCTTAAAACTAAT+GGG | 0.351401 | 5_3:+2117711 | Msa0791230:CDS |
| AAGAAGAAATTGGAAGTTGT+TGG | 0.354398 | 5_3:+2117905 | Msa0791230:CDS |
| GAAGTTGTTGGAATGGATAC+TGG | 0.384320 | 5_3:+2117917 | Msa0791230:CDS |
| AAGAAGAGGGTTCTATTCTA+TGG | 0.399694 | 5_3:-2117455 | None:intergenic |
| GGTGAGAGTGTTTGGGTGAA+AGG | 0.410844 | 5_3:-2117429 | None:intergenic |
| CAATCATTTGCTTTGTCCTA+AGG | 0.417388 | 5_3:+2117961 | Msa0791230:CDS |
| GATACTGGAATTTGTGTTCC+TGG | 0.417714 | 5_3:+2117932 | Msa0791230:CDS |
| ACCACTTTGTAATGAGGTAA+TGG | 0.435249 | 5_3:+2119732 | Msa0791230:CDS |
| TATGAAAGAAAGAGAACTTA+AGG | 0.436171 | 5_3:+2119690 | Msa0791230:CDS |
| GTGAGAGTGTTTGGGTGAAA+GGG | 0.441474 | 5_3:-2117428 | None:intergenic |
| TGCTCTGCTATTGCTCTGTC+GGG | 0.444904 | 5_3:+2119805 | Msa0791230:CDS |
| GTGCTCTGCTATTGCTCTGT+CGG | 0.454570 | 5_3:+2119804 | Msa0791230:CDS |
| ATGGCAGGGTGAGAGTGTTT+GGG | 0.459466 | 5_3:-2117436 | None:intergenic |
| GTGTTCATAGTGGAGAATAA+TGG | 0.459657 | 5_3:-2117560 | None:intergenic |
| GAAATTGGAAGTTGTTGGAA+TGG | 0.475541 | 5_3:+2117910 | Msa0791230:CDS |
| AGAGGGTTCTATTCTATGGC+AGG | 0.476183 | 5_3:-2117451 | None:intergenic |
| CATAGTTCAAAATTAAAAGC+AGG | 0.486101 | 5_3:-2119778 | None:intergenic |
| GAGGGTTTGAGTGTTCATAG+TGG | 0.488825 | 5_3:-2117570 | None:intergenic |
| CGCGGAAAGTGTGGTTGGAA+AGG | 0.490611 | 5_3:+2119504 | Msa0791230:CDS |
| CTTAAAACTAATGGGTATCA+TGG | 0.498906 | 5_3:+2117719 | Msa0791230:CDS |
| TCATGGCGTTTCAACTGCTA+AGG | 0.503301 | 5_3:+2117736 | Msa0791230:CDS |
| AGTTCTCTTTCTTTCATAGG+AGG | 0.506815 | 5_3:-2119685 | None:intergenic |
| TGGGGTTATAGTGAAGAAGA+GGG | 0.541961 | 5_3:-2117468 | None:intergenic |
| TTGGGGTTATAGTGAAGAAG+AGG | 0.551187 | 5_3:-2117469 | None:intergenic |
| AGAAAGAGAACTTAAGGAGG+AGG | 0.551529 | 5_3:+2119696 | Msa0791230:CDS |
| CTATTTACATTGCACCAGAC+GGG | 0.553567 | 5_3:+2119366 | Msa0791230:CDS |
| TCTATTTACATTGCACCAGA+CGG | 0.573285 | 5_3:+2119365 | Msa0791230:CDS |
| ACTAGAACCACTTTGTAATG+AGG | 0.578693 | 5_3:+2119726 | Msa0791230:CDS |
| TCCATTACCTCATTACAAAG+TGG | 0.581054 | 5_3:-2119733 | None:intergenic |
| AGCAGGGACAAAATTTGGTA+CGG | 0.582132 | 5_3:-2119761 | None:intergenic |
| AATAATGGAATTACAGCGTG+TGG | 0.582240 | 5_3:-2117545 | None:intergenic |
| ATAGTTCAAAATTAAAAGCA+GGG | 0.582564 | 5_3:-2119777 | None:intergenic |
| ATATGAATTGCTATCAGCAA+AGG | 0.584578 | 5_3:-2119638 | None:intergenic |
| ACTGCTAAGGTTTCTAGACC+AGG | 0.586227 | 5_3:+2117749 | Msa0791230:CDS |
| AGCAAATGATTGTGTTGACC+AGG | 0.586600 | 5_3:-2117950 | None:intergenic |
| GAAAGAAAGAGAACTTAAGG+AGG | 0.608319 | 5_3:+2119693 | Msa0791230:CDS |
| TCATTTGGAAGAGAATAATG+TGG | 0.609192 | 5_3:+2117862 | Msa0791230:CDS |
| GAGGGTTCTATTCTATGGCA+GGG | 0.609308 | 5_3:-2117450 | None:intergenic |
| AAAAGGGGTTGAATTAGAGA+GGG | 0.620422 | 5_3:-2117588 | None:intergenic |
| ATGTTCTTTGATGAAACACA+AGG | 0.659401 | 5_3:-2117509 | None:intergenic |
| TGGTTGGAAAGGCAGCACCC+AGG | 0.696663 | 5_3:+2119515 | Msa0791230:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AAAAAAAAACTTTAAAATTG+AGG | - | chr5_3:2118857-2118876 | None:intergenic | 10.0% |
| !!! | AAAAAAAAACTTTAAAATTG+AGG | - | chr5_3:2118857-2118876 | None:intergenic | 10.0% |
| !!! | AAAAATGAAGTTTTTTTTTG+GGG | - | chr5_3:2117489-2117508 | None:intergenic | 15.0% |
| !!! | GAAAAATGAAGTTTTTTTTT+GGG | - | chr5_3:2117490-2117509 | None:intergenic | 15.0% |
| !!! | ATTGTAAATAGTTTTTGTAT+GGG | + | chr5_3:2118104-2118123 | Msa0791230:intron | 15.0% |
| !!! | AACTTTTTCATGATATATTA+TGG | + | chr5_3:2118594-2118613 | Msa0791230:intron | 15.0% |
| !!! | TTAACTGAAATTTTGATTTT+AGG | + | chr5_3:2119457-2119476 | Msa0791230:intron | 15.0% |
| !!! | TAACTGAAATTTTGATTTTA+GGG | + | chr5_3:2119458-2119477 | Msa0791230:intron | 15.0% |
| !!! | AAAAATGAAGTTTTTTTTTG+GGG | - | chr5_3:2117489-2117508 | None:intergenic | 15.0% |
| !!! | GAAAAATGAAGTTTTTTTTT+GGG | - | chr5_3:2117490-2117509 | None:intergenic | 15.0% |
| !!! | ATTGTAAATAGTTTTTGTAT+GGG | + | chr5_3:2118104-2118123 | Msa0791230:intron | 15.0% |
| !!! | AACTTTTTCATGATATATTA+TGG | + | chr5_3:2118594-2118613 | Msa0791230:intron | 15.0% |
| !!! | TTAACTGAAATTTTGATTTT+AGG | + | chr5_3:2119457-2119476 | Msa0791230:intron | 15.0% |
| !!! | TAACTGAAATTTTGATTTTA+GGG | + | chr5_3:2119458-2119477 | Msa0791230:intron | 15.0% |
| !!! | GGAAAAATGAAGTTTTTTTT+TGG | - | chr5_3:2117491-2117510 | None:intergenic | 20.0% |
| !!! | ATTTTTGAAGGTTTGAAAAA+GGG | - | chr5_3:2117607-2117626 | None:intergenic | 20.0% |
| !!! | ACAGTAAAAAAATGTCTTTT+AGG | - | chr5_3:2117659-2117678 | None:intergenic | 20.0% |
| !!! | TTGACTATGTTTATTGTTTT+TGG | + | chr5_3:2117833-2117852 | Msa0791230:intron | 20.0% |
| !!! | TGACTATGTTTATTGTTTTT+GGG | + | chr5_3:2117834-2117853 | Msa0791230:intron | 20.0% |
| !!! | TGATATTTTGAAGAAGAAAT+TGG | + | chr5_3:2117895-2117914 | Msa0791230:CDS | 20.0% |
| !! | AATTGAAAAACAAAAACCTT+AGG | - | chr5_3:2117980-2117999 | None:intergenic | 20.0% |
| !!! | CTAATAATTCAAAAAGCATT+CGG | - | chr5_3:2118028-2118047 | None:intergenic | 20.0% |
| !!! | TTTTCAAATAGAAATTGTAG+AGG | + | chr5_3:2118052-2118071 | Msa0791230:intron | 20.0% |
| !! | TTTCAAATAGAAATTGTAGA+GGG | + | chr5_3:2118053-2118072 | Msa0791230:intron | 20.0% |
| !!! | CATTGTAAATAGTTTTTGTA+TGG | + | chr5_3:2118103-2118122 | Msa0791230:intron | 20.0% |
| !! | GCTAAATTAATAATACAACA+AGG | - | chr5_3:2118298-2118317 | None:intergenic | 20.0% |
| !! | TTAGATATAATGACGAAAAT+TGG | - | chr5_3:2118505-2118524 | None:intergenic | 20.0% |
| !! | TCATTATATCTAAGTTTCTT+TGG | + | chr5_3:2118512-2118531 | Msa0791230:intron | 20.0% |
| !! | CTTCAATTAAAATATTTCGA+TGG | + | chr5_3:2118790-2118809 | Msa0791230:intron | 20.0% |
| !!! | GATTTTAAAAAAAGAAGCTT+TGG | + | chr5_3:2118904-2118923 | Msa0791230:intron | 20.0% |
| !!! | TATTTGAAATTTTTGACTAG+AGG | + | chr5_3:2119038-2119057 | Msa0791230:intron | 20.0% |
| !!! | AACTGAAATTTTGATTTTAG+GGG | + | chr5_3:2119459-2119478 | Msa0791230:intron | 20.0% |
| !! | AAAAACAAAATATCTAACCT+GGG | - | chr5_3:2119535-2119554 | None:intergenic | 20.0% |
| !! | AAAAAACAAAATATCTAACC+TGG | - | chr5_3:2119536-2119555 | None:intergenic | 20.0% |
| !! | ATAGTTCAAAATTAAAAGCA+GGG | - | chr5_3:2119780-2119799 | None:intergenic | 20.0% |
| !!! | GGAAAAATGAAGTTTTTTTT+TGG | - | chr5_3:2117491-2117510 | None:intergenic | 20.0% |
| !!! | ATTTTTGAAGGTTTGAAAAA+GGG | - | chr5_3:2117607-2117626 | None:intergenic | 20.0% |
| !!! | ACAGTAAAAAAATGTCTTTT+AGG | - | chr5_3:2117659-2117678 | None:intergenic | 20.0% |
| !!! | TTGACTATGTTTATTGTTTT+TGG | + | chr5_3:2117833-2117852 | Msa0791230:intron | 20.0% |
| !!! | TGACTATGTTTATTGTTTTT+GGG | + | chr5_3:2117834-2117853 | Msa0791230:intron | 20.0% |
| !!! | TGATATTTTGAAGAAGAAAT+TGG | + | chr5_3:2117895-2117914 | Msa0791230:CDS | 20.0% |
| !! | AATTGAAAAACAAAAACCTT+AGG | - | chr5_3:2117980-2117999 | None:intergenic | 20.0% |
| !!! | CTAATAATTCAAAAAGCATT+CGG | - | chr5_3:2118028-2118047 | None:intergenic | 20.0% |
| !!! | TTTTCAAATAGAAATTGTAG+AGG | + | chr5_3:2118052-2118071 | Msa0791230:intron | 20.0% |
| !! | TTTCAAATAGAAATTGTAGA+GGG | + | chr5_3:2118053-2118072 | Msa0791230:intron | 20.0% |
| !!! | CATTGTAAATAGTTTTTGTA+TGG | + | chr5_3:2118103-2118122 | Msa0791230:intron | 20.0% |
| !! | GCTAAATTAATAATACAACA+AGG | - | chr5_3:2118298-2118317 | None:intergenic | 20.0% |
| !! | TTAGATATAATGACGAAAAT+TGG | - | chr5_3:2118505-2118524 | None:intergenic | 20.0% |
| !! | TCATTATATCTAAGTTTCTT+TGG | + | chr5_3:2118512-2118531 | Msa0791230:intron | 20.0% |
| !! | CTTCAATTAAAATATTTCGA+TGG | + | chr5_3:2118790-2118809 | Msa0791230:intron | 20.0% |
| !!! | GATTTTAAAAAAAGAAGCTT+TGG | + | chr5_3:2118904-2118923 | Msa0791230:intron | 20.0% |
| !!! | TATTTGAAATTTTTGACTAG+AGG | + | chr5_3:2119038-2119057 | Msa0791230:intron | 20.0% |
| !!! | AACTGAAATTTTGATTTTAG+GGG | + | chr5_3:2119459-2119478 | Msa0791230:intron | 20.0% |
| !! | AAAAACAAAATATCTAACCT+GGG | - | chr5_3:2119535-2119554 | None:intergenic | 20.0% |
| !! | AAAAAACAAAATATCTAACC+TGG | - | chr5_3:2119536-2119555 | None:intergenic | 20.0% |
| !! | ATAGTTCAAAATTAAAAGCA+GGG | - | chr5_3:2119780-2119799 | None:intergenic | 20.0% |
| !!! | TTTTTGAAGGTTTGAAAAAG+GGG | - | chr5_3:2117606-2117625 | None:intergenic | 25.0% |
| !!! | GATTTTTGAAGGTTTGAAAA+AGG | - | chr5_3:2117608-2117627 | None:intergenic | 25.0% |
| !! | GAAGAAAAAGTGATTTTTGA+AGG | - | chr5_3:2117619-2117638 | None:intergenic | 25.0% |
| ! | ATGTTGTAAAAAACATTACC+TGG | - | chr5_3:2117770-2117789 | None:intergenic | 25.0% |
| ! | TTCAAATAGAAATTGTAGAG+GGG | + | chr5_3:2118054-2118073 | Msa0791230:intron | 25.0% |
| ! | ATATTCTAGACCAAAAACAA+GGG | - | chr5_3:2119014-2119033 | None:intergenic | 25.0% |
| ! | TATATTCTAGACCAAAAACA+AGG | - | chr5_3:2119015-2119034 | None:intergenic | 25.0% |
| !!! | GAAACTTTAATTTGAGTTGA+GGG | + | chr5_3:2119074-2119093 | Msa0791230:intron | 25.0% |
| !! | ACACTCTTCAAATCAATTTT+GGG | - | chr5_3:2119127-2119146 | None:intergenic | 25.0% |
| !! | AACACTCTTCAAATCAATTT+TGG | - | chr5_3:2119128-2119147 | None:intergenic | 25.0% |
| !!! | ATTATTTTTTGTTAGTGCCA+AGG | + | chr5_3:2119317-2119336 | Msa0791230:intron | 25.0% |
| !!! | ACTGAAATTTTGATTTTAGG+GGG | + | chr5_3:2119460-2119479 | Msa0791230:intron | 25.0% |
| !! | AATTTTCATCTTTCTGTTGT+AGG | + | chr5_3:2119615-2119634 | Msa0791230:intron | 25.0% |
| ! | TTAAGTTCTCTTTCTTTCAT+AGG | - | chr5_3:2119691-2119710 | None:intergenic | 25.0% |
| ! | TATGAAAGAAAGAGAACTTA+AGG | + | chr5_3:2119690-2119709 | Msa0791230:CDS | 25.0% |
| ! | CATAGTTCAAAATTAAAAGC+AGG | - | chr5_3:2119781-2119800 | None:intergenic | 25.0% |
| !!! | CTGCTTTTAATTTTGAACTA+TGG | + | chr5_3:2119779-2119798 | Msa0791230:CDS | 25.0% |
| !!! | TTTTTGAAGGTTTGAAAAAG+GGG | - | chr5_3:2117606-2117625 | None:intergenic | 25.0% |
| !!! | GATTTTTGAAGGTTTGAAAA+AGG | - | chr5_3:2117608-2117627 | None:intergenic | 25.0% |
| !! | GAAGAAAAAGTGATTTTTGA+AGG | - | chr5_3:2117619-2117638 | None:intergenic | 25.0% |
| ! | ATGTTGTAAAAAACATTACC+TGG | - | chr5_3:2117770-2117789 | None:intergenic | 25.0% |
| ! | TTCAAATAGAAATTGTAGAG+GGG | + | chr5_3:2118054-2118073 | Msa0791230:intron | 25.0% |
| ! | ATATTCTAGACCAAAAACAA+GGG | - | chr5_3:2119014-2119033 | None:intergenic | 25.0% |
| ! | TATATTCTAGACCAAAAACA+AGG | - | chr5_3:2119015-2119034 | None:intergenic | 25.0% |
| !!! | GAAACTTTAATTTGAGTTGA+GGG | + | chr5_3:2119074-2119093 | Msa0791230:intron | 25.0% |
| !! | ACACTCTTCAAATCAATTTT+GGG | - | chr5_3:2119127-2119146 | None:intergenic | 25.0% |
| !! | AACACTCTTCAAATCAATTT+TGG | - | chr5_3:2119128-2119147 | None:intergenic | 25.0% |
| !!! | ATTATTTTTTGTTAGTGCCA+AGG | + | chr5_3:2119317-2119336 | Msa0791230:intron | 25.0% |
| !!! | ACTGAAATTTTGATTTTAGG+GGG | + | chr5_3:2119460-2119479 | Msa0791230:intron | 25.0% |
| !! | AATTTTCATCTTTCTGTTGT+AGG | + | chr5_3:2119615-2119634 | Msa0791230:intron | 25.0% |
| ! | TTAAGTTCTCTTTCTTTCAT+AGG | - | chr5_3:2119691-2119710 | None:intergenic | 25.0% |
| ! | TATGAAAGAAAGAGAACTTA+AGG | + | chr5_3:2119690-2119709 | Msa0791230:CDS | 25.0% |
| ! | CATAGTTCAAAATTAAAAGC+AGG | - | chr5_3:2119781-2119800 | None:intergenic | 25.0% |
| !!! | CTGCTTTTAATTTTGAACTA+TGG | + | chr5_3:2119779-2119798 | Msa0791230:CDS | 25.0% |
| ATGTTCTTTGATGAAACACA+AGG | - | chr5_3:2117512-2117531 | None:intergenic | 30.0% | |
| CTTTACCGCTTAAAACTAAT+GGG | + | chr5_3:2117711-2117730 | Msa0791230:CDS | 30.0% | |
| !!! | TGATACCCATTAGTTTTAAG+CGG | - | chr5_3:2117719-2117738 | None:intergenic | 30.0% |
| ! | CTTAAAACTAATGGGTATCA+TGG | + | chr5_3:2117719-2117738 | Msa0791230:CDS | 30.0% |
| !!! | TGTTTTTGGGATAGTTCATT+TGG | + | chr5_3:2117847-2117866 | Msa0791230:intron | 30.0% |
| TCATTTGGAAGAGAATAATG+TGG | + | chr5_3:2117862-2117881 | Msa0791230:CDS | 30.0% | |
| AAGAAGAAATTGGAAGTTGT+TGG | + | chr5_3:2117905-2117924 | Msa0791230:CDS | 30.0% | |
| CTTTGCAAAAAAAGAAACAG+GGG | - | chr5_3:2118005-2118024 | None:intergenic | 30.0% | |
| GCTTTGCAAAAAAAGAAACA+GGG | - | chr5_3:2118006-2118025 | None:intergenic | 30.0% | |
| ATTCGTCATTGTGAATTACT+CGG | + | chr5_3:2118334-2118353 | Msa0791230:intron | 30.0% | |
| GACTATTTACAATGTTGGAT+TGG | - | chr5_3:2118429-2118448 | None:intergenic | 30.0% | |
| GAAGAGACTATTTACAATGT+TGG | - | chr5_3:2118434-2118453 | None:intergenic | 30.0% | |
| TTCTGTCATTGTGAATTACT+CGG | + | chr5_3:2118451-2118470 | Msa0791230:intron | 30.0% | |
| AAAAAGTCAAAAACTGCGTT+TGG | - | chr5_3:2118546-2118565 | None:intergenic | 30.0% | |
| AAACACAAACTATGTTGGAT+AGG | - | chr5_3:2118655-2118674 | None:intergenic | 30.0% | |
| ! | TATCCAACATAGTTTGTGTT+TGG | + | chr5_3:2118654-2118673 | Msa0791230:intron | 30.0% |
| AATCCAAACACAAACTATGT+TGG | - | chr5_3:2118660-2118679 | None:intergenic | 30.0% | |
| TGAGTTTGAAAGCAAAGATT+GGG | - | chr5_3:2118697-2118716 | None:intergenic | 30.0% | |
| ATGAGTTTGAAAGCAAAGAT+TGG | - | chr5_3:2118698-2118717 | None:intergenic | 30.0% | |
| ! | CTTTCAAACTCATTCTGAAA+TGG | + | chr5_3:2118705-2118724 | Msa0791230:intron | 30.0% |
| GTAAGTTTACAAGATGAAGT+TGG | + | chr5_3:2118751-2118770 | Msa0791230:intron | 30.0% | |
| AAATTGAGGACAGTTATTGT+AGG | - | chr5_3:2118843-2118862 | None:intergenic | 30.0% | |
| !! | GGAAACTTTAATTTGAGTTG+AGG | + | chr5_3:2119073-2119092 | Msa0791230:intron | 30.0% |
| ! | CACTCTTCAAATCAATTTTG+GGG | - | chr5_3:2119126-2119145 | None:intergenic | 30.0% |
| ATCTGCTGACAAATAGAATT+AGG | - | chr5_3:2119417-2119436 | None:intergenic | 30.0% | |
| ATATGAATTGCTATCAGCAA+AGG | - | chr5_3:2119641-2119660 | None:intergenic | 30.0% | |
| TTAAAAGCAGGGACAAAATT+TGG | - | chr5_3:2119769-2119788 | None:intergenic | 30.0% | |
| ATGTTCTTTGATGAAACACA+AGG | - | chr5_3:2117512-2117531 | None:intergenic | 30.0% | |
| CTTTACCGCTTAAAACTAAT+GGG | + | chr5_3:2117711-2117730 | Msa0791230:CDS | 30.0% | |
| !!! | TGATACCCATTAGTTTTAAG+CGG | - | chr5_3:2117719-2117738 | None:intergenic | 30.0% |
| ! | CTTAAAACTAATGGGTATCA+TGG | + | chr5_3:2117719-2117738 | Msa0791230:CDS | 30.0% |
| !!! | TGTTTTTGGGATAGTTCATT+TGG | + | chr5_3:2117847-2117866 | Msa0791230:intron | 30.0% |
| TCATTTGGAAGAGAATAATG+TGG | + | chr5_3:2117862-2117881 | Msa0791230:CDS | 30.0% | |
| AAGAAGAAATTGGAAGTTGT+TGG | + | chr5_3:2117905-2117924 | Msa0791230:CDS | 30.0% | |
| CTTTGCAAAAAAAGAAACAG+GGG | - | chr5_3:2118005-2118024 | None:intergenic | 30.0% | |
| GCTTTGCAAAAAAAGAAACA+GGG | - | chr5_3:2118006-2118025 | None:intergenic | 30.0% | |
| ATTCGTCATTGTGAATTACT+CGG | + | chr5_3:2118334-2118353 | Msa0791230:intron | 30.0% | |
| GACTATTTACAATGTTGGAT+TGG | - | chr5_3:2118429-2118448 | None:intergenic | 30.0% | |
| GAAGAGACTATTTACAATGT+TGG | - | chr5_3:2118434-2118453 | None:intergenic | 30.0% | |
| TTCTGTCATTGTGAATTACT+CGG | + | chr5_3:2118451-2118470 | Msa0791230:intron | 30.0% | |
| AAAAAGTCAAAAACTGCGTT+TGG | - | chr5_3:2118546-2118565 | None:intergenic | 30.0% | |
| AAACACAAACTATGTTGGAT+AGG | - | chr5_3:2118655-2118674 | None:intergenic | 30.0% | |
| ! | TATCCAACATAGTTTGTGTT+TGG | + | chr5_3:2118654-2118673 | Msa0791230:intron | 30.0% |
| AATCCAAACACAAACTATGT+TGG | - | chr5_3:2118660-2118679 | None:intergenic | 30.0% | |
| TGAGTTTGAAAGCAAAGATT+GGG | - | chr5_3:2118697-2118716 | None:intergenic | 30.0% | |
| ATGAGTTTGAAAGCAAAGAT+TGG | - | chr5_3:2118698-2118717 | None:intergenic | 30.0% | |
| ! | CTTTCAAACTCATTCTGAAA+TGG | + | chr5_3:2118705-2118724 | Msa0791230:intron | 30.0% |
| GTAAGTTTACAAGATGAAGT+TGG | + | chr5_3:2118751-2118770 | Msa0791230:intron | 30.0% | |
| AAATTGAGGACAGTTATTGT+AGG | - | chr5_3:2118843-2118862 | None:intergenic | 30.0% | |
| !! | GGAAACTTTAATTTGAGTTG+AGG | + | chr5_3:2119073-2119092 | Msa0791230:intron | 30.0% |
| ! | CACTCTTCAAATCAATTTTG+GGG | - | chr5_3:2119126-2119145 | None:intergenic | 30.0% |
| ATCTGCTGACAAATAGAATT+AGG | - | chr5_3:2119417-2119436 | None:intergenic | 30.0% | |
| ATATGAATTGCTATCAGCAA+AGG | - | chr5_3:2119641-2119660 | None:intergenic | 30.0% | |
| TTAAAAGCAGGGACAAAATT+TGG | - | chr5_3:2119769-2119788 | None:intergenic | 30.0% | |
| AAGAAGAGGGTTCTATTCTA+TGG | - | chr5_3:2117458-2117477 | None:intergenic | 35.0% | |
| ! | AATAATGGAATTACAGCGTG+TGG | - | chr5_3:2117548-2117567 | None:intergenic | 35.0% |
| ! | GTGTTCATAGTGGAGAATAA+TGG | - | chr5_3:2117563-2117582 | None:intergenic | 35.0% |
| AAAAGGGGTTGAATTAGAGA+GGG | - | chr5_3:2117591-2117610 | None:intergenic | 35.0% | |
| AAAAAGGGGTTGAATTAGAG+AGG | - | chr5_3:2117592-2117611 | None:intergenic | 35.0% | |
| !!! | TTAGTTTTAAGCGGTAAAGG+AGG | - | chr5_3:2117710-2117729 | None:intergenic | 35.0% |
| !!! | CCATTAGTTTTAAGCGGTAA+AGG | - | chr5_3:2117713-2117732 | None:intergenic | 35.0% |
| CCTTTACCGCTTAAAACTAA+TGG | + | chr5_3:2117710-2117729 | Msa0791230:CDS | 35.0% | |
| GAAATTGGAAGTTGTTGGAA+TGG | + | chr5_3:2117910-2117929 | Msa0791230:CDS | 35.0% | |
| CAATCATTTGCTTTGTCCTA+AGG | + | chr5_3:2117961-2117980 | Msa0791230:CDS | 35.0% | |
| GGCTTTGCAAAAAAAGAAAC+AGG | - | chr5_3:2118007-2118026 | None:intergenic | 35.0% | |
| AAATAGAAATTGTAGAGGGG+TGG | + | chr5_3:2118057-2118076 | Msa0791230:intron | 35.0% | |
| ATTGTGAATTACTCGGTACT+GGG | + | chr5_3:2118341-2118360 | Msa0791230:intron | 35.0% | |
| ATTGTGAATTACTCGGTACT+GGG | + | chr5_3:2118341-2118360 | Msa0791230:intron | 35.0% | |
| AAACTATGTTGGATAGGCAT+GGG | - | chr5_3:2118649-2118668 | None:intergenic | 35.0% | |
| !! | TCATTCTGAAATGGAAGCAA+GGG | + | chr5_3:2118714-2118733 | Msa0791230:intron | 35.0% |
| !!! | GTTTTTTCCTCCCTTGTTTT+TGG | + | chr5_3:2119001-2119020 | Msa0791230:intron | 35.0% |
| TTGACTAGAGGTAAGTTTGA+AGG | + | chr5_3:2119050-2119069 | Msa0791230:intron | 35.0% | |
| TGACTAGAGGTAAGTTTGAA+GGG | + | chr5_3:2119051-2119070 | Msa0791230:intron | 35.0% | |
| ATGTATGACATAGGATAGGA+TGG | - | chr5_3:2119243-2119262 | None:intergenic | 35.0% | |
| TGCAATGTATGACATAGGAT+AGG | - | chr5_3:2119247-2119266 | None:intergenic | 35.0% | |
| TGCTTTGCAATGTATGACAT+AGG | - | chr5_3:2119252-2119271 | None:intergenic | 35.0% | |
| !!! | ATTTTTTGTTAGTGCCAAGG+TGG | + | chr5_3:2119320-2119339 | Msa0791230:intron | 35.0% |
| TCTATTTACATTGCACCAGA+CGG | + | chr5_3:2119365-2119384 | Msa0791230:CDS | 35.0% | |
| TTAGGTAAGTCGACGAAAAA+AGG | - | chr5_3:2119399-2119418 | None:intergenic | 35.0% | |
| AGTTCTCTTTCTTTCATAGG+AGG | - | chr5_3:2119688-2119707 | None:intergenic | 35.0% | |
| GAAAGAAAGAGAACTTAAGG+AGG | + | chr5_3:2119693-2119712 | Msa0791230:CDS | 35.0% | |
| ACTAGAACCACTTTGTAATG+AGG | + | chr5_3:2119726-2119745 | Msa0791230:CDS | 35.0% | |
| ACCACTTTGTAATGAGGTAA+TGG | + | chr5_3:2119732-2119751 | Msa0791230:CDS | 35.0% | |
| TCCATTACCTCATTACAAAG+TGG | - | chr5_3:2119736-2119755 | None:intergenic | 35.0% | |
| AAGAAGAGGGTTCTATTCTA+TGG | - | chr5_3:2117458-2117477 | None:intergenic | 35.0% | |
| ! | AATAATGGAATTACAGCGTG+TGG | - | chr5_3:2117548-2117567 | None:intergenic | 35.0% |
| ! | GTGTTCATAGTGGAGAATAA+TGG | - | chr5_3:2117563-2117582 | None:intergenic | 35.0% |
| AAAAGGGGTTGAATTAGAGA+GGG | - | chr5_3:2117591-2117610 | None:intergenic | 35.0% | |
| AAAAAGGGGTTGAATTAGAG+AGG | - | chr5_3:2117592-2117611 | None:intergenic | 35.0% | |
| !!! | TTAGTTTTAAGCGGTAAAGG+AGG | - | chr5_3:2117710-2117729 | None:intergenic | 35.0% |
| !!! | CCATTAGTTTTAAGCGGTAA+AGG | - | chr5_3:2117713-2117732 | None:intergenic | 35.0% |
| CCTTTACCGCTTAAAACTAA+TGG | + | chr5_3:2117710-2117729 | Msa0791230:CDS | 35.0% | |
| GAAATTGGAAGTTGTTGGAA+TGG | + | chr5_3:2117910-2117929 | Msa0791230:CDS | 35.0% | |
| CAATCATTTGCTTTGTCCTA+AGG | + | chr5_3:2117961-2117980 | Msa0791230:CDS | 35.0% | |
| GGCTTTGCAAAAAAAGAAAC+AGG | - | chr5_3:2118007-2118026 | None:intergenic | 35.0% | |
| AAATAGAAATTGTAGAGGGG+TGG | + | chr5_3:2118057-2118076 | Msa0791230:intron | 35.0% | |
| ATTGTGAATTACTCGGTACT+GGG | + | chr5_3:2118341-2118360 | Msa0791230:intron | 35.0% | |
| ATTGTGAATTACTCGGTACT+GGG | + | chr5_3:2118341-2118360 | Msa0791230:intron | 35.0% | |
| AAACTATGTTGGATAGGCAT+GGG | - | chr5_3:2118649-2118668 | None:intergenic | 35.0% | |
| !! | TCATTCTGAAATGGAAGCAA+GGG | + | chr5_3:2118714-2118733 | Msa0791230:intron | 35.0% |
| !!! | GTTTTTTCCTCCCTTGTTTT+TGG | + | chr5_3:2119001-2119020 | Msa0791230:intron | 35.0% |
| TTGACTAGAGGTAAGTTTGA+AGG | + | chr5_3:2119050-2119069 | Msa0791230:intron | 35.0% | |
| TGACTAGAGGTAAGTTTGAA+GGG | + | chr5_3:2119051-2119070 | Msa0791230:intron | 35.0% | |
| ATGTATGACATAGGATAGGA+TGG | - | chr5_3:2119243-2119262 | None:intergenic | 35.0% | |
| TGCAATGTATGACATAGGAT+AGG | - | chr5_3:2119247-2119266 | None:intergenic | 35.0% | |
| TGCTTTGCAATGTATGACAT+AGG | - | chr5_3:2119252-2119271 | None:intergenic | 35.0% | |
| !!! | ATTTTTTGTTAGTGCCAAGG+TGG | + | chr5_3:2119320-2119339 | Msa0791230:intron | 35.0% |
| TCTATTTACATTGCACCAGA+CGG | + | chr5_3:2119365-2119384 | Msa0791230:CDS | 35.0% | |
| TTAGGTAAGTCGACGAAAAA+AGG | - | chr5_3:2119399-2119418 | None:intergenic | 35.0% | |
| AGTTCTCTTTCTTTCATAGG+AGG | - | chr5_3:2119688-2119707 | None:intergenic | 35.0% | |
| GAAAGAAAGAGAACTTAAGG+AGG | + | chr5_3:2119693-2119712 | Msa0791230:CDS | 35.0% | |
| ACTAGAACCACTTTGTAATG+AGG | + | chr5_3:2119726-2119745 | Msa0791230:CDS | 35.0% | |
| ACCACTTTGTAATGAGGTAA+TGG | + | chr5_3:2119732-2119751 | Msa0791230:CDS | 35.0% | |
| TCCATTACCTCATTACAAAG+TGG | - | chr5_3:2119736-2119755 | None:intergenic | 35.0% | |
| TGGGGTTATAGTGAAGAAGA+GGG | - | chr5_3:2117471-2117490 | None:intergenic | 40.0% | |
| TTGGGGTTATAGTGAAGAAG+AGG | - | chr5_3:2117472-2117491 | None:intergenic | 40.0% | |
| GAAGTTGTTGGAATGGATAC+TGG | + | chr5_3:2117917-2117936 | Msa0791230:CDS | 40.0% | |
| GATACTGGAATTTGTGTTCC+TGG | + | chr5_3:2117932-2117951 | Msa0791230:CDS | 40.0% | |
| ! | AGCAAATGATTGTGTTGACC+AGG | - | chr5_3:2117953-2117972 | None:intergenic | 40.0% |
| TCTTATTATCTTGTGCCCTC+AGG | + | chr5_3:2118127-2118146 | Msa0791230:intron | 40.0% | |
| !! | TTCCTTAACTTGTGTCCTGA+GGG | - | chr5_3:2118145-2118164 | None:intergenic | 40.0% |
| !! | ATTCCTTAACTTGTGTCCTG+AGG | - | chr5_3:2118146-2118165 | None:intergenic | 40.0% |
| AATGCTAACATGTGCCCTAA+GGG | - | chr5_3:2118273-2118292 | None:intergenic | 40.0% | |
| AAATGCTAACATGTGCCCTA+AGG | - | chr5_3:2118274-2118293 | None:intergenic | 40.0% | |
| CATTGTGAATTACTCGGTAC+TGG | + | chr5_3:2118340-2118359 | Msa0791230:intron | 40.0% | |
| CATTGTGAATTACTCGGTAC+TGG | + | chr5_3:2118340-2118359 | Msa0791230:intron | 40.0% | |
| CAAACTATGTTGGATAGGCA+TGG | - | chr5_3:2118650-2118669 | None:intergenic | 40.0% | |
| AGTTTGTGTTTGGATTGCTG+AGG | + | chr5_3:2118664-2118683 | Msa0791230:intron | 40.0% | |
| GTTTGTGTTTGGATTGCTGA+GGG | + | chr5_3:2118665-2118684 | Msa0791230:intron | 40.0% | |
| GTTTGAAAGCAAAGATTGGG+AGG | - | chr5_3:2118694-2118713 | None:intergenic | 40.0% | |
| !! | CTCATTCTGAAATGGAAGCA+AGG | + | chr5_3:2118713-2118732 | Msa0791230:intron | 40.0% |
| !! | CATTCTGAAATGGAAGCAAG+GGG | + | chr5_3:2118715-2118734 | Msa0791230:intron | 40.0% |
| TTCTAGACCAAAAACAAGGG+AGG | - | chr5_3:2119011-2119030 | None:intergenic | 40.0% | |
| GACTAGAGGTAAGTTTGAAG+GGG | + | chr5_3:2119052-2119071 | Msa0791230:intron | 40.0% | |
| !!! | CATGTTTTTTGTGCTCACTC+TGG | + | chr5_3:2119279-2119298 | Msa0791230:intron | 40.0% |
| ! | TTTTTATCGTGTCACCACCT+TGG | - | chr5_3:2119337-2119356 | None:intergenic | 40.0% |
| CTATTTACATTGCACCAGAC+GGG | + | chr5_3:2119366-2119385 | Msa0791230:CDS | 40.0% | |
| AAAAAGGATAAGTACCCGTC+TGG | - | chr5_3:2119383-2119402 | None:intergenic | 40.0% | |
| TTCTATTTGTCAGCAGATCG+TGG | + | chr5_3:2119419-2119438 | Msa0791230:intron | 40.0% | |
| TGCCTGCTAAATACAATGTG+AGG | + | chr5_3:2119573-2119592 | Msa0791230:intron | 40.0% | |
| GACCTCACATTGTATTTAGC+AGG | - | chr5_3:2119578-2119597 | None:intergenic | 40.0% | |
| AGAAAGAGAACTTAAGGAGG+AGG | + | chr5_3:2119696-2119715 | Msa0791230:CDS | 40.0% | |
| !! | TACAAAGTGGTTCTAGTTGC+AGG | - | chr5_3:2119723-2119742 | None:intergenic | 40.0% |
| AGCAGGGACAAAATTTGGTA+CGG | - | chr5_3:2119764-2119783 | None:intergenic | 40.0% | |
| TGGGGTTATAGTGAAGAAGA+GGG | - | chr5_3:2117471-2117490 | None:intergenic | 40.0% | |
| TTGGGGTTATAGTGAAGAAG+AGG | - | chr5_3:2117472-2117491 | None:intergenic | 40.0% | |
| GAAGTTGTTGGAATGGATAC+TGG | + | chr5_3:2117917-2117936 | Msa0791230:CDS | 40.0% | |
| GATACTGGAATTTGTGTTCC+TGG | + | chr5_3:2117932-2117951 | Msa0791230:CDS | 40.0% | |
| ! | AGCAAATGATTGTGTTGACC+AGG | - | chr5_3:2117953-2117972 | None:intergenic | 40.0% |
| TCTTATTATCTTGTGCCCTC+AGG | + | chr5_3:2118127-2118146 | Msa0791230:intron | 40.0% | |
| !! | TTCCTTAACTTGTGTCCTGA+GGG | - | chr5_3:2118145-2118164 | None:intergenic | 40.0% |
| !! | ATTCCTTAACTTGTGTCCTG+AGG | - | chr5_3:2118146-2118165 | None:intergenic | 40.0% |
| AATGCTAACATGTGCCCTAA+GGG | - | chr5_3:2118273-2118292 | None:intergenic | 40.0% | |
| AAATGCTAACATGTGCCCTA+AGG | - | chr5_3:2118274-2118293 | None:intergenic | 40.0% | |
| CATTGTGAATTACTCGGTAC+TGG | + | chr5_3:2118340-2118359 | Msa0791230:intron | 40.0% | |
| CATTGTGAATTACTCGGTAC+TGG | + | chr5_3:2118340-2118359 | Msa0791230:intron | 40.0% | |
| CAAACTATGTTGGATAGGCA+TGG | - | chr5_3:2118650-2118669 | None:intergenic | 40.0% | |
| AGTTTGTGTTTGGATTGCTG+AGG | + | chr5_3:2118664-2118683 | Msa0791230:intron | 40.0% | |
| GTTTGTGTTTGGATTGCTGA+GGG | + | chr5_3:2118665-2118684 | Msa0791230:intron | 40.0% | |
| GTTTGAAAGCAAAGATTGGG+AGG | - | chr5_3:2118694-2118713 | None:intergenic | 40.0% | |
| !! | CTCATTCTGAAATGGAAGCA+AGG | + | chr5_3:2118713-2118732 | Msa0791230:intron | 40.0% |
| !! | CATTCTGAAATGGAAGCAAG+GGG | + | chr5_3:2118715-2118734 | Msa0791230:intron | 40.0% |
| TTCTAGACCAAAAACAAGGG+AGG | - | chr5_3:2119011-2119030 | None:intergenic | 40.0% | |
| GACTAGAGGTAAGTTTGAAG+GGG | + | chr5_3:2119052-2119071 | Msa0791230:intron | 40.0% | |
| !!! | CATGTTTTTTGTGCTCACTC+TGG | + | chr5_3:2119279-2119298 | Msa0791230:intron | 40.0% |
| ! | TTTTTATCGTGTCACCACCT+TGG | - | chr5_3:2119337-2119356 | None:intergenic | 40.0% |
| CTATTTACATTGCACCAGAC+GGG | + | chr5_3:2119366-2119385 | Msa0791230:CDS | 40.0% | |
| AAAAAGGATAAGTACCCGTC+TGG | - | chr5_3:2119383-2119402 | None:intergenic | 40.0% | |
| TTCTATTTGTCAGCAGATCG+TGG | + | chr5_3:2119419-2119438 | Msa0791230:intron | 40.0% | |
| TGCCTGCTAAATACAATGTG+AGG | + | chr5_3:2119573-2119592 | Msa0791230:intron | 40.0% | |
| GACCTCACATTGTATTTAGC+AGG | - | chr5_3:2119578-2119597 | None:intergenic | 40.0% | |
| AGAAAGAGAACTTAAGGAGG+AGG | + | chr5_3:2119696-2119715 | Msa0791230:CDS | 40.0% | |
| !! | TACAAAGTGGTTCTAGTTGC+AGG | - | chr5_3:2119723-2119742 | None:intergenic | 40.0% |
| AGCAGGGACAAAATTTGGTA+CGG | - | chr5_3:2119764-2119783 | None:intergenic | 40.0% | |
| !! | GTGAGAGTGTTTGGGTGAAA+GGG | - | chr5_3:2117431-2117450 | None:intergenic | 45.0% |
| GAGGGTTCTATTCTATGGCA+GGG | - | chr5_3:2117453-2117472 | None:intergenic | 45.0% | |
| AGAGGGTTCTATTCTATGGC+AGG | - | chr5_3:2117454-2117473 | None:intergenic | 45.0% | |
| GAGGGTTTGAGTGTTCATAG+TGG | - | chr5_3:2117573-2117592 | None:intergenic | 45.0% | |
| TCATGGCGTTTCAACTGCTA+AGG | + | chr5_3:2117736-2117755 | Msa0791230:CDS | 45.0% | |
| ! | ACTGCTAAGGTTTCTAGACC+AGG | + | chr5_3:2117749-2117768 | Msa0791230:CDS | 45.0% |
| ATTCCTTAGCATGTGCCCTT+AGG | + | chr5_3:2118255-2118274 | Msa0791230:intron | 45.0% | |
| TTCCTTAGCATGTGCCCTTA+GGG | + | chr5_3:2118256-2118275 | Msa0791230:intron | 45.0% | |
| TGGGATGAGTACGGTATTTG+TGG | + | chr5_3:2118477-2118496 | Msa0791230:intron | 45.0% | |
| ATGTTGGATAGGCATGGGTA+CGG | - | chr5_3:2118644-2118663 | None:intergenic | 45.0% | |
| !! | GTGAGAGTGTTTGGGTGAAA+GGG | - | chr5_3:2117431-2117450 | None:intergenic | 45.0% |
| GAGGGTTCTATTCTATGGCA+GGG | - | chr5_3:2117453-2117472 | None:intergenic | 45.0% | |
| AGAGGGTTCTATTCTATGGC+AGG | - | chr5_3:2117454-2117473 | None:intergenic | 45.0% | |
| GAGGGTTTGAGTGTTCATAG+TGG | - | chr5_3:2117573-2117592 | None:intergenic | 45.0% | |
| TCATGGCGTTTCAACTGCTA+AGG | + | chr5_3:2117736-2117755 | Msa0791230:CDS | 45.0% | |
| ! | ACTGCTAAGGTTTCTAGACC+AGG | + | chr5_3:2117749-2117768 | Msa0791230:CDS | 45.0% |
| ATTCCTTAGCATGTGCCCTT+AGG | + | chr5_3:2118255-2118274 | Msa0791230:intron | 45.0% | |
| TTCCTTAGCATGTGCCCTTA+GGG | + | chr5_3:2118256-2118275 | Msa0791230:intron | 45.0% | |
| TGGGATGAGTACGGTATTTG+TGG | + | chr5_3:2118477-2118496 | Msa0791230:intron | 45.0% | |
| ATGTTGGATAGGCATGGGTA+CGG | - | chr5_3:2118644-2118663 | None:intergenic | 45.0% | |
| !! | GGTGAGAGTGTTTGGGTGAA+AGG | - | chr5_3:2117432-2117451 | None:intergenic | 50.0% |
| !! | ATGGCAGGGTGAGAGTGTTT+GGG | - | chr5_3:2117439-2117458 | None:intergenic | 50.0% |
| !! | TATGGCAGGGTGAGAGTGTT+TGG | - | chr5_3:2117440-2117459 | None:intergenic | 50.0% |
| TGCCCTCAGGACACAAGTTA+AGG | + | chr5_3:2118140-2118159 | Msa0791230:intron | 50.0% | |
| ! | ACTCGGTACTGGGATGAGTA+CGG | + | chr5_3:2118468-2118487 | Msa0791230:intron | 50.0% |
| !! | ATTTTAGGGGGTCTGCTGCA+TGG | + | chr5_3:2119472-2119491 | Msa0791230:intron | 50.0% |
| !! | TTTTAGGGGGTCTGCTGCAT+GGG | + | chr5_3:2119473-2119492 | Msa0791230:intron | 50.0% |
| ! | GTGTGTTTTCGCGGAAAGTG+TGG | + | chr5_3:2119495-2119514 | Msa0791230:CDS | 50.0% |
| !! | GTTTTCGCGGAAAGTGTGGT+TGG | + | chr5_3:2119499-2119518 | Msa0791230:CDS | 50.0% |
| GTGCTCTGCTATTGCTCTGT+CGG | + | chr5_3:2119804-2119823 | Msa0791230:CDS | 50.0% | |
| TGCTCTGCTATTGCTCTGTC+GGG | + | chr5_3:2119805-2119824 | Msa0791230:CDS | 50.0% | |
| !! | GGTGAGAGTGTTTGGGTGAA+AGG | - | chr5_3:2117432-2117451 | None:intergenic | 50.0% |
| !! | ATGGCAGGGTGAGAGTGTTT+GGG | - | chr5_3:2117439-2117458 | None:intergenic | 50.0% |
| !! | TATGGCAGGGTGAGAGTGTT+TGG | - | chr5_3:2117440-2117459 | None:intergenic | 50.0% |
| TGCCCTCAGGACACAAGTTA+AGG | + | chr5_3:2118140-2118159 | Msa0791230:intron | 50.0% | |
| ! | ACTCGGTACTGGGATGAGTA+CGG | + | chr5_3:2118468-2118487 | Msa0791230:intron | 50.0% |
| !! | ATTTTAGGGGGTCTGCTGCA+TGG | + | chr5_3:2119472-2119491 | Msa0791230:intron | 50.0% |
| !! | TTTTAGGGGGTCTGCTGCAT+GGG | + | chr5_3:2119473-2119492 | Msa0791230:intron | 50.0% |
| ! | GTGTGTTTTCGCGGAAAGTG+TGG | + | chr5_3:2119495-2119514 | Msa0791230:CDS | 50.0% |
| !! | GTTTTCGCGGAAAGTGTGGT+TGG | + | chr5_3:2119499-2119518 | Msa0791230:CDS | 50.0% |
| GTGCTCTGCTATTGCTCTGT+CGG | + | chr5_3:2119804-2119823 | Msa0791230:CDS | 50.0% | |
| TGCTCTGCTATTGCTCTGTC+GGG | + | chr5_3:2119805-2119824 | Msa0791230:CDS | 50.0% | |
| ! | TGCCCTAAGGGCACATGCTA+AGG | - | chr5_3:2118261-2118280 | None:intergenic | 55.0% |
| ! | GCTGCATGGGTGTGTTTTCG+CGG | + | chr5_3:2119486-2119505 | Msa0791230:CDS | 55.0% |
| ! | CGCGGAAAGTGTGGTTGGAA+AGG | + | chr5_3:2119504-2119523 | Msa0791230:CDS | 55.0% |
| ! | TGCCCTAAGGGCACATGCTA+AGG | - | chr5_3:2118261-2118280 | None:intergenic | 55.0% |
| ! | GCTGCATGGGTGTGTTTTCG+CGG | + | chr5_3:2119486-2119505 | Msa0791230:CDS | 55.0% |
| ! | CGCGGAAAGTGTGGTTGGAA+AGG | + | chr5_3:2119504-2119523 | Msa0791230:CDS | 55.0% |
| TGGTTGGAAAGGCAGCACCC+AGG | + | chr5_3:2119515-2119534 | Msa0791230:CDS | 60.0% | |
| TGGTTGGAAAGGCAGCACCC+AGG | + | chr5_3:2119515-2119534 | Msa0791230:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_3 | gene | 2117397 | 2119843 | 2117397 | ID=Msa0791230;Name=Msa0791230 |
| chr5_3 | mRNA | 2117397 | 2119843 | 2117397 | ID=Msa0791230-mRNA-1;Parent=Msa0791230;Name=Msa0791230-mRNA-1;_AED=0.05;_eAED=0.05;_QI=133|1|0.8|1|1|1|5|0|227 |
| chr5_3 | exon | 2117397 | 2117770 | 2117397 | ID=Msa0791230-mRNA-1:exon:882;Parent=Msa0791230-mRNA-1 |
| chr5_3 | exon | 2117861 | 2117982 | 2117861 | ID=Msa0791230-mRNA-1:exon:883;Parent=Msa0791230-mRNA-1 |
| chr5_3 | exon | 2119332 | 2119387 | 2119332 | ID=Msa0791230-mRNA-1:exon:884;Parent=Msa0791230-mRNA-1 |
| chr5_3 | exon | 2119479 | 2119536 | 2119479 | ID=Msa0791230-mRNA-1:exon:885;Parent=Msa0791230-mRNA-1 |
| chr5_3 | exon | 2119637 | 2119843 | 2119637 | ID=Msa0791230-mRNA-1:exon:886;Parent=Msa0791230-mRNA-1 |
| chr5_3 | five_prime_UTR | 2117397 | 2117529 | 2117397 | ID=Msa0791230-mRNA-1:five_prime_utr;Parent=Msa0791230-mRNA-1 |
| chr5_3 | CDS | 2117530 | 2117770 | 2117530 | ID=Msa0791230-mRNA-1:cds;Parent=Msa0791230-mRNA-1 |
| chr5_3 | CDS | 2117861 | 2117982 | 2117861 | ID=Msa0791230-mRNA-1:cds;Parent=Msa0791230-mRNA-1 |
| chr5_3 | CDS | 2119332 | 2119387 | 2119332 | ID=Msa0791230-mRNA-1:cds;Parent=Msa0791230-mRNA-1 |
| chr5_3 | CDS | 2119479 | 2119536 | 2119479 | ID=Msa0791230-mRNA-1:cds;Parent=Msa0791230-mRNA-1 |
| chr5_3 | CDS | 2119637 | 2119843 | 2119637 | ID=Msa0791230-mRNA-1:cds;Parent=Msa0791230-mRNA-1 |
| Gene Sequence |
| Protein sequence |
