Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443500 | XP_024636066.2 | 92.818 | 181 | 11 | 1 | 1 | 179 | 1 | 181 | 2.90e-115 | 335 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443500 | sp|Q9M7X9|CITRX_ARATH | 70.430 | 186 | 45 | 3 | 1 | 179 | 1 | 183 | 2.34e-85 | 252 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443500 | A0A396JQ67 | 92.818 | 181 | 11 | 1 | 1 | 179 | 1 | 181 | 1.39e-115 | 335 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001950 | Msa0443500 | 0.816220 | 6.188475e-52 | -8.615850e-47 |
| Msa0006000 | Msa0443500 | 0.801536 | 8.596315e-49 | -8.615850e-47 |
| Msa0017510 | Msa0443500 | 0.816003 | 6.917796e-52 | -8.615850e-47 |
| Msa0027260 | Msa0443500 | 0.800699 | 1.275078e-48 | -8.615850e-47 |
| Msa0027540 | Msa0443500 | 0.800215 | 1.599787e-48 | -8.615850e-47 |
| Msa0029270 | Msa0443500 | 0.801561 | 8.496428e-49 | -8.615850e-47 |
| Msa0030380 | Msa0443500 | 0.827764 | 1.306674e-54 | -8.615850e-47 |
| Msa0030430 | Msa0443500 | 0.808503 | 2.998988e-50 | -8.615850e-47 |
| Msa0032120 | Msa0443500 | 0.836339 | 9.916818e-57 | -8.615850e-47 |
| Msa0032400 | Msa0443500 | 0.807772 | 4.293093e-50 | -8.615850e-47 |
| Msa0032430 | Msa0443500 | 0.802159 | 6.402569e-49 | -8.615850e-47 |
| Msa0032580 | Msa0443500 | 0.809235 | 2.091217e-50 | -8.615850e-47 |
| Msa0040690 | Msa0443500 | 0.811853 | 5.687100e-51 | -8.615850e-47 |
| Msa0044710 | Msa0443500 | 0.809123 | 2.210460e-50 | -8.615850e-47 |
| Msa0056520 | Msa0443500 | 0.810223 | 1.282365e-50 | -8.615850e-47 |
| Msa0056690 | Msa0443500 | 0.813013 | 3.172433e-51 | -8.615850e-47 |
| Msa0090590 | Msa0443500 | 0.800201 | 1.610690e-48 | -8.615850e-47 |
| Msa0127050 | Msa0443500 | 0.802232 | 6.186227e-49 | -8.615850e-47 |
| Msa0140570 | Msa0443500 | 0.822106 | 2.828751e-53 | -8.615850e-47 |
| Msa0150820 | Msa0443500 | 0.802863 | 4.583659e-49 | -8.615850e-47 |
| Msa0157290 | Msa0443500 | 0.815851 | 7.480454e-52 | -8.615850e-47 |
| Msa0160550 | Msa0443500 | 0.812663 | 3.786305e-51 | -8.615850e-47 |
| Msa0165660 | Msa0443500 | 0.803301 | 3.720663e-49 | -8.615850e-47 |
| Msa0168100 | Msa0443500 | 0.818230 | 2.184358e-52 | -8.615850e-47 |
| Msa0172070 | Msa0443500 | 0.807339 | 5.304851e-50 | -8.615850e-47 |
| Msa0172970 | Msa0443500 | 0.804017 | 2.643560e-49 | -8.615850e-47 |
| Msa0173740 | Msa0443500 | 0.834176 | 3.486716e-56 | -8.615850e-47 |
| Msa0173820 | Msa0443500 | 0.833355 | 5.593621e-56 | -8.615850e-47 |
| Msa0173830 | Msa0443500 | 0.834902 | 2.290972e-56 | -8.615850e-47 |
| Msa0185700 | Msa0443500 | 0.816959 | 4.225687e-52 | -8.615850e-47 |
| Msa0187070 | Msa0443500 | 0.822313 | 2.533136e-53 | -8.615850e-47 |
| Msa0188140 | Msa0443500 | 0.814466 | 1.518989e-51 | -8.615850e-47 |
| Msa0193120 | Msa0443500 | 0.843011 | 1.820836e-58 | -8.615850e-47 |
| Msa0200950 | Msa0443500 | -0.803015 | 4.264789e-49 | -8.615850e-47 |
| Msa0220720 | Msa0443500 | 0.812183 | 4.818311e-51 | -8.615850e-47 |
| Msa0225310 | Msa0443500 | 0.819196 | 1.318554e-52 | -8.615850e-47 |
| Msa0378080 | Msa0443500 | 0.867571 | 1.240916e-65 | -8.615850e-47 |
| Msa0385580 | Msa0443500 | 0.813229 | 2.844289e-51 | -8.615850e-47 |
| Msa0390060 | Msa0443500 | 0.804006 | 2.656554e-49 | -8.615850e-47 |
| Msa0395960 | Msa0443500 | 0.854891 | 9.101471e-62 | -8.615850e-47 |
| Msa0398950 | Msa0443500 | 0.801195 | 1.009455e-48 | -8.615850e-47 |
| Msa0402650 | Msa0443500 | 0.811505 | 6.768622e-51 | -8.615850e-47 |
| Msa0419820 | Msa0443500 | 0.833055 | 6.642819e-56 | -8.615850e-47 |
| Msa0424920 | Msa0443500 | 0.800299 | 1.538488e-48 | -8.615850e-47 |
| Msa0425010 | Msa0443500 | 0.809885 | 1.516426e-50 | -8.615850e-47 |
| Msa0425940 | Msa0443500 | 0.834829 | 2.389937e-56 | -8.615850e-47 |
| Msa0426020 | Msa0443500 | 0.830986 | 2.155847e-55 | -8.615850e-47 |
| Msa0426160 | Msa0443500 | 0.837536 | 4.906563e-57 | -8.615850e-47 |
| Msa0443500 | Msa0465790 | 0.848183 | 7.208554e-60 | -8.615850e-47 |
| Msa0443500 | Msa0468160 | 0.861876 | 7.536540e-64 | -8.615850e-47 |
| Msa0443500 | Msa0470180 | 0.860039 | 2.726545e-63 | -8.615850e-47 |
| Msa0443500 | Msa0483860 | 0.805390 | 1.365999e-49 | -8.615850e-47 |
| Msa0443500 | Msa0491020 | 0.817577 | 3.068103e-52 | -8.615850e-47 |
| Msa0443500 | Msa0504020 | 0.815638 | 8.343735e-52 | -8.615850e-47 |
| Msa0443500 | Msa0509390 | 0.811773 | 5.920257e-51 | -8.615850e-47 |
| Msa0443500 | Msa0510350 | 0.834283 | 3.277484e-56 | -8.615850e-47 |
| Msa0443500 | Msa0518040 | 0.861629 | 8.969894e-64 | -8.615850e-47 |
| Msa0443500 | Msa0520070 | 0.804668 | 1.934018e-49 | -8.615850e-47 |
| Msa0443500 | Msa0522660 | 0.809541 | 1.797939e-50 | -8.615850e-47 |
| Msa0443500 | Msa0524890 | -0.800904 | 1.157817e-48 | -8.615850e-47 |
| Msa0443500 | Msa0529830 | 0.801613 | 8.292053e-49 | -8.615850e-47 |
| Msa0443500 | Msa0535030 | 0.801408 | 9.133655e-49 | -8.615850e-47 |
| Msa0443500 | Msa0535060 | 0.805157 | 1.528756e-49 | -8.615850e-47 |
| Msa0443500 | Msa0546840 | 0.815635 | 8.355394e-52 | -8.615850e-47 |
| Msa0443500 | Msa0576690 | 0.826735 | 2.304558e-54 | -8.615850e-47 |
| Msa0443500 | Msa0579290 | 0.833583 | 4.906953e-56 | -8.615850e-47 |
| Msa0443500 | Msa0579390 | 0.837680 | 4.504500e-57 | -8.615850e-47 |
| Msa0443500 | Msa0589150 | 0.808907 | 2.459410e-50 | -8.615850e-47 |
| Msa0443500 | Msa0590680 | 0.807293 | 5.424224e-50 | -8.615850e-47 |
| Msa0443500 | Msa0607200 | 0.825384 | 4.828473e-54 | -8.615850e-47 |
| Msa0443500 | Msa0610430 | 0.801947 | 7.078132e-49 | -8.615850e-47 |
| Msa0443500 | Msa0618010 | 0.806360 | 8.541305e-50 | -8.615850e-47 |
| Msa0443500 | Msa0621120 | 0.833612 | 4.826141e-56 | -8.615850e-47 |
| Msa0443500 | Msa0650020 | 0.828971 | 6.680488e-55 | -8.615850e-47 |
| Msa0443500 | Msa0660490 | 0.804623 | 1.976738e-49 | -8.615850e-47 |
| Msa0443500 | Msa0677290 | 0.850861 | 1.291265e-60 | -8.615850e-47 |
| Msa0443500 | Msa0689260 | 0.804676 | 1.926486e-49 | -8.615850e-47 |
| Msa0443500 | Msa0701030 | 0.802736 | 4.870201e-49 | -8.615850e-47 |
| Msa0443500 | Msa0715700 | 0.813649 | 2.300234e-51 | -8.615850e-47 |
| Msa0443500 | Msa0722960 | 0.802608 | 5.174522e-49 | -8.615850e-47 |
| Msa0443500 | Msa0734660 | 0.837207 | 5.957349e-57 | -8.615850e-47 |
| Msa0443500 | Msa0734750 | 0.800523 | 1.384707e-48 | -8.615850e-47 |
| Msa0443500 | Msa0743720 | 0.815006 | 1.152845e-51 | -8.615850e-47 |
| Msa0443500 | Msa0763830 | 0.802846 | 4.622308e-49 | -8.615850e-47 |
| Msa0443500 | Msa0776220 | 0.821156 | 4.688806e-53 | -8.615850e-47 |
| Msa0443500 | Msa0777050 | 0.801789 | 7.630096e-49 | -8.615850e-47 |
| Msa0443500 | Msa0790850 | 0.800507 | 1.395449e-48 | -8.615850e-47 |
| Msa0443500 | Msa0791230 | 0.809022 | 2.323542e-50 | -8.615850e-47 |
| Msa0443500 | Msa0793800 | 0.811295 | 7.518720e-51 | -8.615850e-47 |
| Msa0443500 | Msa0795090 | 0.822968 | 1.783134e-53 | -8.615850e-47 |
| Msa0443500 | Msa0812570 | 0.802006 | 6.884227e-49 | -8.615850e-47 |
| Msa0443500 | Msa0813670 | 0.847977 | 8.218871e-60 | -8.615850e-47 |
| Msa0443500 | Msa0813720 | 0.852221 | 5.322749e-61 | -8.615850e-47 |
| Msa0443500 | Msa0813740 | 0.828472 | 8.820893e-55 | -8.615850e-47 |
| Msa0443500 | Msa0816640 | 0.817201 | 3.729428e-52 | -8.615850e-47 |
| Msa0443500 | Msa0819030 | -0.805557 | 1.260518e-49 | -8.615850e-47 |
| Msa0443500 | Msa0824680 | 0.811138 | 8.133984e-51 | -8.615850e-47 |
| Msa0443500 | Msa0831580 | 0.812924 | 3.318817e-51 | -8.615850e-47 |
| Msa0443500 | Msa0845750 | 0.818392 | 2.007539e-52 | -8.615850e-47 |
| Msa0443500 | Msa0850960 | 0.825516 | 4.492243e-54 | -8.615850e-47 |
| Msa0443500 | Msa0854120 | 0.806896 | 6.582356e-50 | -8.615850e-47 |
| Msa0443500 | Msa0878500 | 0.820753 | 5.806434e-53 | -8.615850e-47 |
| Msa0443500 | Msa0880140 | 0.814383 | 1.584577e-51 | -8.615850e-47 |
| Msa0443500 | Msa0938220 | 0.802434 | 5.620332e-49 | -8.615850e-47 |
| Msa0443500 | Msa0941730 | 0.800277 | 1.553983e-48 | -8.615850e-47 |
| Msa0443500 | Msa0941750 | 0.813726 | 2.212279e-51 | -8.615850e-47 |
| Msa0443500 | Msa0944190 | 0.804490 | 2.107397e-49 | -8.615850e-47 |
| Msa0443500 | Msa0959360 | 0.818897 | 1.541925e-52 | -8.615850e-47 |
| Msa0443500 | Msa0965070 | 0.806238 | 9.063762e-50 | -8.615850e-47 |
| Msa0443500 | Msa0981820 | -0.833870 | 4.159119e-56 | -8.615850e-47 |
| Msa0443500 | Msa1009820 | 0.825341 | 4.941148e-54 | -8.615850e-47 |
| Msa0443500 | Msa1012700 | 0.815764 | 7.822534e-52 | -8.615850e-47 |
| Msa0443500 | Msa1048330 | 0.805279 | 1.441186e-49 | -8.615850e-47 |
| Msa0443500 | Msa1051200 | 0.847415 | 1.173676e-59 | -8.615850e-47 |
| Msa0443500 | Msa1054240 | 0.810216 | 1.287129e-50 | -8.615850e-47 |
| Msa0443500 | Msa1084470 | 0.819720 | 1.001701e-52 | -8.615850e-47 |
| Msa0443500 | Msa1093270 | 0.811307 | 7.474904e-51 | -8.615850e-47 |
| Msa0443500 | Msa1106700 | 0.802921 | 4.460502e-49 | -8.615850e-47 |
| Msa0443500 | Msa1111630 | 0.835946 | 1.248031e-56 | -8.615850e-47 |
| Msa0443500 | Msa1137700 | 0.837044 | 6.555806e-57 | -8.615850e-47 |
| Msa0443500 | Msa1139810 | 0.803021 | 4.251490e-49 | -8.615850e-47 |
| Msa0443500 | Msa1142970 | 0.818591 | 1.809899e-52 | -8.615850e-47 |
| Msa0443500 | Msa1167170 | 0.839917 | 1.189178e-57 | -8.615850e-47 |
| Msa0443500 | Msa1188940 | 0.847223 | 1.324722e-59 | -8.615850e-47 |
| Msa0443500 | Msa1193070 | 0.833831 | 4.253476e-56 | -8.615850e-47 |
| Msa0443500 | Msa1199220 | 0.813809 | 2.121230e-51 | -8.615850e-47 |
| Msa0443500 | Msa1243170 | 0.826284 | 2.951091e-54 | -8.615850e-47 |
| Msa0443500 | Msa1254610 | 0.804058 | 2.592265e-49 | -8.615850e-47 |
| Msa0443500 | Msa1284520 | 0.833837 | 4.239918e-56 | -8.615850e-47 |
| Msa0443500 | Msa1314630 | 0.811247 | 7.702247e-51 | -8.615850e-47 |
| Msa0443500 | Msa1324000 | 0.844907 | 5.651252e-59 | -8.615850e-47 |
| Msa0443500 | Msa1335860 | 0.804222 | 2.395981e-49 | -8.615850e-47 |
| Msa0443500 | Msa1353330 | 0.800766 | 1.235533e-48 | -8.615850e-47 |
| Msa0443500 | Msa1358250 | 0.807429 | 5.078039e-50 | -8.615850e-47 |
| Msa0443500 | Msa1382310 | 0.809880 | 1.520286e-50 | -8.615850e-47 |
| Msa0443500 | Msa1386780 | 0.804636 | 1.964532e-49 | -8.615850e-47 |
| Msa0443500 | Msa1398480 | 0.815632 | 8.369149e-52 | -8.615850e-47 |
| Msa0443500 | Msa1406040 | 0.802090 | 6.615178e-49 | -8.615850e-47 |
| Msa0443500 | Msa1417870 | 0.818135 | 2.295093e-52 | -8.615850e-47 |
| Msa0443500 | Msa1427830 | 0.805587 | 1.242119e-49 | -8.615850e-47 |
| Msa0443500 | Msa1429250 | 0.813359 | 2.663824e-51 | -8.615850e-47 |
| Msa0443500 | Msa1447300 | 0.829133 | 6.103607e-55 | -8.615850e-47 |
| Msa0443500 | Msa1453620 | 0.816594 | 5.103875e-52 | -8.615850e-47 |
| Msa0443500 | Msa1460440 | 0.819229 | 1.295832e-52 | -8.615850e-47 |
| Msa0443500 | Msa1464830 | 0.821339 | 4.255027e-53 | -8.615850e-47 |
| Msa0241620 | Msa0443500 | 0.826107 | 3.251860e-54 | -8.615850e-47 |
| Msa0241640 | Msa0443500 | 0.853684 | 2.031093e-61 | -8.615850e-47 |
| Msa0262310 | Msa0443500 | 0.823023 | 1.730980e-53 | -8.615850e-47 |
| Msa0268130 | Msa0443500 | 0.802077 | 6.658055e-49 | -8.615850e-47 |
| Msa0272480 | Msa0443500 | -0.839214 | 1.811268e-57 | -8.615850e-47 |
| Msa0279700 | Msa0443500 | 0.834321 | 3.206223e-56 | -8.615850e-47 |
| Msa0279790 | Msa0443500 | 0.845862 | 3.116495e-59 | -8.615850e-47 |
| Msa0280490 | Msa0443500 | 0.801264 | 9.771838e-49 | -8.615850e-47 |
| Msa0299870 | Msa0443500 | 0.816819 | 4.543899e-52 | -8.615850e-47 |
| Msa0312690 | Msa0443500 | -0.820737 | 5.856621e-53 | -8.615850e-47 |
| Msa0316160 | Msa0443500 | -0.824037 | 1.002547e-53 | -8.615850e-47 |
| Msa0317250 | Msa0443500 | 0.800528 | 1.381310e-48 | -8.615850e-47 |
| Msa0320100 | Msa0443500 | 0.816224 | 6.174190e-52 | -8.615850e-47 |
| Msa0322570 | Msa0443500 | 0.814313 | 1.641537e-51 | -8.615850e-47 |
| Msa0337240 | Msa0443500 | 0.806698 | 7.248316e-50 | -8.615850e-47 |
| Msa0337620 | Msa0443500 | 0.807156 | 5.799526e-50 | -8.615850e-47 |
| Msa0337650 | Msa0443500 | 0.808330 | 3.265457e-50 | -8.615850e-47 |
| Msa0349060 | Msa0443500 | 0.841777 | 3.867412e-58 | -8.615850e-47 |
| Msa0351080 | Msa0443500 | 0.804626 | 1.973257e-49 | -8.615850e-47 |
| Msa0358170 | Msa0443500 | 0.876166 | 1.733161e-68 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443500 | MtrunA17_Chr1g0164481 | 92.818 | 181 | 11 | 1 | 1 | 179 | 1 | 181 | 2.67e-119 | 335 |
| Msa0443500 | MtrunA17_Chr3g0082241 | 94.631 | 149 | 6 | 1 | 1 | 147 | 32 | 180 | 1.23e-101 | 290 |
| Msa0443500 | MtrunA17_Chr1g0211871 | 36.145 | 83 | 51 | 1 | 84 | 166 | 82 | 162 | 2.29e-13 | 65.1 |
| Msa0443500 | MtrunA17_Chr3g0125821 | 28.571 | 105 | 72 | 2 | 73 | 177 | 70 | 171 | 8.12e-12 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0443500 | AT3G06730.1 | 70.430 | 186 | 45 | 3 | 1 | 179 | 1 | 183 | 2.38e-86 | 252 |
| Msa0443500 | AT1G50320.1 | 29.310 | 174 | 112 | 5 | 3 | 176 | 11 | 173 | 2.99e-13 | 65.1 |
| Msa0443500 | AT1G43560.1 | 32.955 | 88 | 57 | 1 | 92 | 179 | 78 | 163 | 2.98e-11 | 59.3 |
Find 46 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GGTATAATTGTAGCCTATTT+TGG | 0.101435 | 3_3:-14508289 | Msa0443500:three_prime_UTR |
| CTAACCAATTCATATGAATT+TGG | 0.168019 | 3_3:-14508251 | Msa0443500:three_prime_UTR |
| CTTCAATTCTGTCCCAAAAT+AGG | 0.291332 | 3_3:+14508276 | None:intergenic |
| AAAGCCAAATTCATATGAAT+TGG | 0.338463 | 3_3:+14508247 | None:intergenic |
| GTGGATATGGTGAGAGGATA+AGG | 0.365258 | 3_3:+14512434 | None:intergenic |
| TTTGATGTATTTCAGGTAAG+AGG | 0.368265 | 3_3:-14508484 | Msa0443500:intron |
| AAAGAAATGTAAAACAGTTA+AGG | 0.375104 | 3_3:-14508364 | Msa0443500:exon |
| AGATCCTACAAGATATTGTT+TGG | 0.381266 | 3_3:-14508310 | Msa0443500:three_prime_UTR |
| GATCAGGACTAATAAAGAAT+AGG | 0.400554 | 3_3:+14508452 | None:intergenic |
| GTGTGGACCATGCATATTAA+TGG | 0.405684 | 3_3:-14512127 | Msa0443500:CDS |
| TATACCAAACAATATCTTGT+AGG | 0.419629 | 3_3:+14508306 | None:intergenic |
| TTTGAAGAGAAAGTTGAAAA+GGG | 0.428856 | 3_3:+14512506 | None:intergenic |
| ATTGTTGAAGTCAGTGGATA+TGG | 0.430845 | 3_3:+14512421 | None:intergenic |
| TTGAGTGAGGAAAGAGAAGG+AGG | 0.438749 | 3_3:+14512621 | None:intergenic |
| ATCAGGACTAATAAAGAATA+GGG | 0.446630 | 3_3:+14508453 | None:intergenic |
| AAGAAATGTAAAACAGTTAA+GGG | 0.448450 | 3_3:-14508363 | Msa0443500:exon |
| ATATCTCTCATCATCTGTAT+TGG | 0.448708 | 3_3:+14508394 | None:intergenic |
| AATGGCTCAAGAACTTGAAA+TGG | 0.455916 | 3_3:-14512109 | Msa0443500:intron |
| CTAGAAATTCCAACTATGTC+AGG | 0.465876 | 3_3:+14508331 | None:intergenic |
| TTGAAGTCGACATATGTTGT+AGG | 0.467759 | 3_3:-14508189 | Msa0443500:three_prime_UTR |
| CTAAAATCTTCCATCTTCAA+TGG | 0.475382 | 3_3:-14512579 | Msa0443500:exon |
| AACGATGCTATTAGAACTGA+AGG | 0.478185 | 3_3:-14508424 | Msa0443500:CDS |
| GCGTAGAAATCAATAATAAG+AGG | 0.481926 | 3_3:+14512156 | None:intergenic |
| TGAGTGAGGAAAGAGAAGGA+GGG | 0.499312 | 3_3:+14512622 | None:intergenic |
| TGGAAGAGAGCCATTGAAGA+TGG | 0.499467 | 3_3:+14512569 | None:intergenic |
| CTTTCTATTGTTGAAGTCAG+TGG | 0.499988 | 3_3:+14512415 | None:intergenic |
| TTGCTTTGCAAACCACCTAA+AGG | 0.504152 | 3_3:-14512392 | Msa0443500:CDS |
| AGTTGAAAAGGGTGAAAGAG+TGG | 0.510023 | 3_3:+14512517 | None:intergenic |
| AGCTCAAGAAATTCAAGAGC+TGG | 0.515843 | 3_3:-14512199 | Msa0443500:CDS |
| TACTCATCACCTGACATAGT+TGG | 0.517973 | 3_3:-14508340 | Msa0443500:three_prime_UTR |
| TGAAGTCGACATATGTTGTA+GGG | 0.532947 | 3_3:-14508188 | Msa0443500:three_prime_UTR |
| GATTTCTACGCGACATGGTG+TGG | 0.537998 | 3_3:-14512144 | Msa0443500:CDS |
| TTGATGTATTTCAGGTAAGA+GGG | 0.540490 | 3_3:-14508483 | Msa0443500:intron |
| TGAATTTGCACGCGACATGC+AGG | 0.541865 | 3_3:-14509462 | Msa0443500:intron |
| GGACTAATAAAGAATAGGGT+AGG | 0.548631 | 3_3:+14508457 | None:intergenic |
| TCTTGAGCCATTAATATGCA+TGG | 0.556004 | 3_3:+14512120 | None:intergenic |
| GAAGAGGGAGAAACAGAGAG+AGG | 0.566082 | 3_3:+14512482 | None:intergenic |
| AAGTCAGTGGATATGGTGAG+AGG | 0.568271 | 3_3:+14512428 | None:intergenic |
| AGAAATTCAAGAGCTGGTGA+AGG | 0.570301 | 3_3:-14512193 | Msa0443500:CDS |
| GATGTGGAAGAGTGTAGGAA+TGG | 0.586021 | 3_3:+14512549 | None:intergenic |
| TTATTGATTTCTACGCGACA+TGG | 0.587417 | 3_3:-14512149 | Msa0443500:CDS |
| GAAATTCAAGAGCTGGTGAA+GGG | 0.603680 | 3_3:-14512192 | Msa0443500:CDS |
| AGAGTGGATAGTTTGTGATG+TGG | 0.635573 | 3_3:+14512533 | None:intergenic |
| TTTGTGATGTGGAAGAGTGT+AGG | 0.646507 | 3_3:+14512544 | None:intergenic |
| ACGATGCTATTAGAACTGAA+GGG | 0.688811 | 3_3:-14508423 | Msa0443500:CDS |
| TGTTAAAGAAGACTATCTTG+TGG | 0.696050 | 3_3:-14512363 | Msa0443500:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TGTTTTTTTAATACTAAATT+TGG | - | chr3_3:14508426-14508445 | Msa0443500:CDS | 10.0% |
| !!! | GTTTTTTTAATACTAAATTT+GGG | - | chr3_3:14508427-14508446 | Msa0443500:CDS | 10.0% |
| !!! | ATCTTTGTTTAAGTTTAAAT+TGG | + | chr3_3:14509098-14509117 | None:intergenic | 15.0% |
| !! | AATCTTAAATATAACACAAA+CGG | + | chr3_3:14509289-14509308 | None:intergenic | 15.0% |
| !!! | TCATGTTGTTTTTAATTAAT+AGG | - | chr3_3:14509647-14509666 | Msa0443500:intron | 15.0% |
| !!! | CATGTTGTTTTTAATTAATA+GGG | - | chr3_3:14509648-14509667 | Msa0443500:intron | 15.0% |
| !!! | ATGTTGTTTTTAATTAATAG+GGG | - | chr3_3:14509649-14509668 | Msa0443500:intron | 15.0% |
| !! | ATGAAAAATAGTATATAAGT+GGG | + | chr3_3:14509809-14509828 | None:intergenic | 15.0% |
| !! | AATGAAAAATAGTATATAAG+TGG | + | chr3_3:14509810-14509829 | None:intergenic | 15.0% |
| !! | GATTATCTTAAAAAAAATAG+TGG | - | chr3_3:14511414-14511433 | Msa0443500:intron | 15.0% |
| !! | AAACTGTTAAAGAACTAAAA+TGG | + | chr3_3:14508838-14508857 | None:intergenic | 20.0% |
| !! | CTTATTTGAATTTATCTACA+GGG | + | chr3_3:14509075-14509094 | None:intergenic | 20.0% |
| !! | TTGTATTCTAAACAATACTT+AGG | - | chr3_3:14509554-14509573 | Msa0443500:intron | 20.0% |
| !!! | TGTTGTTTTTAATTAATAGG+GGG | - | chr3_3:14509650-14509669 | Msa0443500:intron | 20.0% |
| !! | TATACTCTAATAAATGATGA+TGG | + | chr3_3:14510069-14510088 | None:intergenic | 20.0% |
| !! | GTTTACATATAAACTAACTA+TGG | + | chr3_3:14510101-14510120 | None:intergenic | 20.0% |
| !!! | GTTAGTTTATATGTAAACTA+TGG | - | chr3_3:14510103-14510122 | Msa0443500:intron | 20.0% |
| !! | ATAGTTGAGACTTATTTATA+GGG | + | chr3_3:14510174-14510193 | None:intergenic | 20.0% |
| !! | AATAGTTGAGACTTATTTAT+AGG | + | chr3_3:14510175-14510194 | None:intergenic | 20.0% |
| !! | GTAAAATATTCTGGATTTAT+AGG | - | chr3_3:14510768-14510787 | Msa0443500:intron | 20.0% |
| !! | ATATTGAATATTCTTTGAAC+AGG | - | chr3_3:14510831-14510850 | Msa0443500:intron | 20.0% |
| !! | TTCATGAAAAATAGTATACA+GGG | + | chr3_3:14511051-14511070 | None:intergenic | 20.0% |
| !! | ATTCATGAAAAATAGTATAC+AGG | + | chr3_3:14511052-14511071 | None:intergenic | 20.0% |
| !! | TAAGAGTTATTGAATATTGT+TGG | - | chr3_3:14511540-14511559 | Msa0443500:intron | 20.0% |
| !!! | TCAAAATTTTGCCTTTATTA+TGG | - | chr3_3:14511891-14511910 | Msa0443500:intron | 20.0% |
| !! | AAGTATAAACATGATTAAGA+TGG | + | chr3_3:14512175-14512194 | None:intergenic | 20.0% |
| !!! | ACTTTTATTACACACATAAT+TGG | - | chr3_3:14512191-14512210 | Msa0443500:CDS | 20.0% |
| !!! | ATAAACTTTTGATGTATTTC+AGG | - | chr3_3:14512255-14512274 | Msa0443500:intron | 20.0% |
| !! | AAAGAAATGTAAAACAGTTA+AGG | - | chr3_3:14512382-14512401 | Msa0443500:CDS | 20.0% |
| !! | AAGAAATGTAAAACAGTTAA+GGG | - | chr3_3:14512383-14512402 | Msa0443500:CDS | 20.0% |
| ! | TTTGAAGAGAAAGTTGAAAA+GGG | + | chr3_3:14508243-14508262 | None:intergenic | 25.0% |
| !!! | TTTTGAAGAGAAAGTTGAAA+AGG | + | chr3_3:14508244-14508263 | None:intergenic | 25.0% |
| !! | TCTTTAACATGTTTTCCTTT+AGG | + | chr3_3:14508372-14508391 | None:intergenic | 25.0% |
| ! | AAAAAGAGATTCTTTATCTG+AGG | + | chr3_3:14508807-14508826 | None:intergenic | 25.0% |
| !!! | TTTAACAGTTTTGTAGATTG+TGG | - | chr3_3:14508847-14508866 | Msa0443500:intron | 25.0% |
| ! | GTAATTATTCACCAAAAAGT+TGG | - | chr3_3:14508886-14508905 | Msa0443500:intron | 25.0% |
| !! | TAATACTTGAACCAACTTTT+TGG | + | chr3_3:14508900-14508919 | None:intergenic | 25.0% |
| !! | AACCAGGCTTAAATATTTTA+AGG | + | chr3_3:14508927-14508946 | None:intergenic | 25.0% |
| ! | TAAAATATTTAAGCCTGGTT+TGG | - | chr3_3:14508927-14508946 | Msa0443500:intron | 25.0% |
| ! | GCTTATTTGAATTTATCTAC+AGG | + | chr3_3:14509076-14509095 | None:intergenic | 25.0% |
| ! | CTAGCAGTTATTGTAATAAT+TGG | - | chr3_3:14509208-14509227 | Msa0443500:intron | 25.0% |
| ! | TTAACTCAATTCTACAAAAC+TGG | - | chr3_3:14509762-14509781 | Msa0443500:intron | 25.0% |
| ! | AAAAATAGTATATAAGTGGG+AGG | + | chr3_3:14509806-14509825 | None:intergenic | 25.0% |
| ! | CTGGAAATATGTATATAAGT+GGG | + | chr3_3:14510010-14510029 | None:intergenic | 25.0% |
| ! | TCTGGAAATATGTATATAAG+TGG | + | chr3_3:14510011-14510030 | None:intergenic | 25.0% |
| ! | ATATGTAAACTATGGTTAGT+TGG | - | chr3_3:14510111-14510130 | Msa0443500:intron | 25.0% |
| ! | TAGTTGAGACTTATTTATAG+GGG | + | chr3_3:14510173-14510192 | None:intergenic | 25.0% |
| !!! | ACTTTGTTTTTTGTAGTCAT+AGG | - | chr3_3:14510587-14510606 | Msa0443500:intron | 25.0% |
| ! | GAATTGTTAAAATAGACGTT+GGG | - | chr3_3:14510698-14510717 | Msa0443500:intron | 25.0% |
| ! | TCTGAACTTGTAAAATATTC+TGG | - | chr3_3:14510759-14510778 | Msa0443500:intron | 25.0% |
| ! | TGTATGGTTCTTAATGTTTA+AGG | - | chr3_3:14511086-14511105 | Msa0443500:intron | 25.0% |
| !! | GCATATTTCTATTGATTGTA+TGG | - | chr3_3:14511112-14511131 | Msa0443500:intron | 25.0% |
| !! | ATTGTATGGTTGTTAATTTG+AGG | - | chr3_3:14511126-14511145 | Msa0443500:intron | 25.0% |
| !! | TTGTATGGTTGTTAATTTGA+GGG | - | chr3_3:14511127-14511146 | Msa0443500:intron | 25.0% |
| ! | TACTCTTTACTTACTAACAT+TGG | + | chr3_3:14511161-14511180 | None:intergenic | 25.0% |
| ! | ATCAGGACTAATAAAGAATA+GGG | + | chr3_3:14512296-14512315 | None:intergenic | 25.0% |
| ! | TATACCAAACAATATCTTGT+AGG | + | chr3_3:14512443-14512462 | None:intergenic | 25.0% |
| !! | GTATAATTGTAGCCTATTTT+GGG | - | chr3_3:14512458-14512477 | Msa0443500:CDS | 25.0% |
| ! | CTAACCAATTCATATGAATT+TGG | - | chr3_3:14512495-14512514 | Msa0443500:CDS | 25.0% |
| ! | AAAGCCAAATTCATATGAAT+TGG | + | chr3_3:14512502-14512521 | None:intergenic | 25.0% |
| CTAAAATCTTCCATCTTCAA+TGG | - | chr3_3:14508167-14508186 | Msa0443500:three_prime_UTR | 30.0% | |
| GTTGAAGAAGAAAAAGAAGA+GGG | + | chr3_3:14508282-14508301 | None:intergenic | 30.0% | |
| TGTTGAAGAAGAAAAAGAAG+AGG | + | chr3_3:14508283-14508302 | None:intergenic | 30.0% | |
| ! | TTAACATGTTTTCCTTTAGG+TGG | + | chr3_3:14508369-14508388 | None:intergenic | 30.0% |
| TGTTAAAGAAGACTATCTTG+TGG | - | chr3_3:14508383-14508402 | Msa0443500:CDS | 30.0% | |
| GCGTAGAAATCAATAATAAG+AGG | + | chr3_3:14508593-14508612 | None:intergenic | 30.0% | |
| ! | TAGATTGTGGATTGTGATAT+GGG | - | chr3_3:14508860-14508879 | Msa0443500:intron | 30.0% |
| CTCCTTAAAATATTTAAGCC+TGG | - | chr3_3:14508922-14508941 | Msa0443500:intron | 30.0% | |
| !! | TACTAGTCTGTTTTACTTCT+AGG | + | chr3_3:14509124-14509143 | None:intergenic | 30.0% |
| TGCCTAGAAGTAAATTCAAT+TGG | - | chr3_3:14509154-14509173 | Msa0443500:intron | 30.0% | |
| AGCCAATTGAATTTACTTCT+AGG | + | chr3_3:14509159-14509178 | None:intergenic | 30.0% | |
| GCTATACCATCTAATTCTAT+CGG | + | chr3_3:14509237-14509256 | None:intergenic | 30.0% | |
| TCATTAAAATCTATCCAGTG+TGG | - | chr3_3:14509331-14509350 | Msa0443500:intron | 30.0% | |
| !! | TGTTTTTAATTAATAGGGGG+AGG | - | chr3_3:14509653-14509672 | Msa0443500:intron | 30.0% |
| ACAATGCATTTATCCAAGAT+TGG | + | chr3_3:14510369-14510388 | None:intergenic | 30.0% | |
| ATAGGGGTAAACTTGTAATA+TGG | - | chr3_3:14510491-14510510 | Msa0443500:intron | 30.0% | |
| CTATTACAGAGCTATGATTA+AGG | + | chr3_3:14510552-14510571 | None:intergenic | 30.0% | |
| AAACAGTTGATCACAAAGTT+TGG | + | chr3_3:14510622-14510641 | None:intergenic | 30.0% | |
| !! | TTATCTGTCTACTTTAGAGT+CGG | - | chr3_3:14510661-14510680 | Msa0443500:intron | 30.0% |
| GGAATTGTTAAAATAGACGT+TGG | - | chr3_3:14510697-14510716 | Msa0443500:intron | 30.0% | |
| ! | TTCTGGATTTATAGGTTTTG+AGG | - | chr3_3:14510776-14510795 | Msa0443500:intron | 30.0% |
| ! | TGGATCTATTATGTTACTTC+AGG | + | chr3_3:14510808-14510827 | None:intergenic | 30.0% |
| TGAAGTAACATAATAGATCC+AGG | - | chr3_3:14510807-14510826 | Msa0443500:intron | 30.0% | |
| CAAAGAATATTCAATATGCC+TGG | + | chr3_3:14510828-14510847 | None:intergenic | 30.0% | |
| AATTTATGCATATACCCCTT+TGG | - | chr3_3:14510975-14510994 | Msa0443500:intron | 30.0% | |
| AAGCTGCACAAATTTATTGA+AGG | + | chr3_3:14511208-14511227 | None:intergenic | 30.0% | |
| ! | CAAGGTTACAAGATTTTTGA+CGG | + | chr3_3:14511367-14511386 | None:intergenic | 30.0% |
| TAAGATGAGGACCATAATAA+AGG | + | chr3_3:14511905-14511924 | None:intergenic | 30.0% | |
| CTAGTACCATCTTTGAATTT+GGG | + | chr3_3:14511961-14511980 | None:intergenic | 30.0% | |
| ACTAGTACCATCTTTGAATT+TGG | + | chr3_3:14511962-14511981 | None:intergenic | 30.0% | |
| ! | TTTGATGTATTTCAGGTAAG+AGG | - | chr3_3:14512262-14512281 | Msa0443500:intron | 30.0% |
| ! | TTGATGTATTTCAGGTAAGA+GGG | - | chr3_3:14512263-14512282 | Msa0443500:intron | 30.0% |
| GATCAGGACTAATAAAGAAT+AGG | + | chr3_3:14512297-14512316 | None:intergenic | 30.0% | |
| !!! | GTTCTAATAGCATCGTTTTT+TGG | + | chr3_3:14512319-14512338 | None:intergenic | 30.0% |
| ATATCTCTCATCATCTGTAT+TGG | + | chr3_3:14512355-14512374 | None:intergenic | 30.0% | |
| AGATCCTACAAGATATTGTT+TGG | - | chr3_3:14512436-14512455 | Msa0443500:CDS | 30.0% | |
| ! | GGTATAATTGTAGCCTATTT+TGG | - | chr3_3:14512457-14512476 | Msa0443500:CDS | 30.0% |
| !!! | TTTTTGAGTGAGGAAAGAGA+AGG | + | chr3_3:14508131-14508150 | None:intergenic | 35.0% |
| !!! | AAAGAGTGAGTTTTTGAGTG+AGG | + | chr3_3:14508141-14508160 | None:intergenic | 35.0% |
| ATTGTTGAAGTCAGTGGATA+TGG | + | chr3_3:14508328-14508347 | None:intergenic | 35.0% | |
| CTTTCTATTGTTGAAGTCAG+TGG | + | chr3_3:14508334-14508353 | None:intergenic | 35.0% | |
| !! | TTATTGATTTCTACGCGACA+TGG | - | chr3_3:14508597-14508616 | Msa0443500:intron | 35.0% |
| TCTTGAGCCATTAATATGCA+TGG | + | chr3_3:14508629-14508648 | None:intergenic | 35.0% | |
| AATGGCTCAAGAACTTGAAA+TGG | - | chr3_3:14508637-14508656 | Msa0443500:intron | 35.0% | |
| ACCATTGCTCTTATATGACT+AGG | - | chr3_3:14508697-14508716 | Msa0443500:intron | 35.0% | |
| TCCTAGTCATATAAGAGCAA+TGG | + | chr3_3:14508701-14508720 | None:intergenic | 35.0% | |
| ! | GTAGATTGTGGATTGTGATA+TGG | - | chr3_3:14508859-14508878 | Msa0443500:intron | 35.0% |
| AGTAAATTCAATTGGCTGCA+AGG | - | chr3_3:14509162-14509181 | Msa0443500:intron | 35.0% | |
| !! | GCAAGGTTTGACTTGATTAT+TGG | - | chr3_3:14509179-14509198 | Msa0443500:intron | 35.0% |
| ATTTCAAAATCATGCCACAC+TGG | + | chr3_3:14509348-14509367 | None:intergenic | 35.0% | |
| TACCTTGACTTCAAAGTTAG+AGG | - | chr3_3:14509378-14509397 | Msa0443500:intron | 35.0% | |
| !! | AACCTCTAACTTTGAAGTCA+AGG | + | chr3_3:14509383-14509402 | None:intergenic | 35.0% |
| AGTTAGAGGTTTCTATCTGT+TGG | - | chr3_3:14509392-14509411 | Msa0443500:intron | 35.0% | |
| TGGTTGATCAGTAACAACAT+AGG | - | chr3_3:14509425-14509444 | Msa0443500:intron | 35.0% | |
| GTTCTCATGTTGCATTAGTT+AGG | - | chr3_3:14509470-14509489 | Msa0443500:CDS | 35.0% | |
| CTTAGGCTATTCTTTGTACA+CGG | - | chr3_3:14509571-14509590 | Msa0443500:intron | 35.0% | |
| TTAGGCTATTCTTTGTACAC+GGG | - | chr3_3:14509572-14509591 | Msa0443500:intron | 35.0% | |
| GAAAATGTGAGAAGAGTGAA+AGG | - | chr3_3:14509598-14509617 | Msa0443500:intron | 35.0% | |
| GACTGTGTTCAAATCTACAA+AGG | + | chr3_3:14509701-14509720 | None:intergenic | 35.0% | |
| AGTCTTACGTTAGATGAGAT+AGG | + | chr3_3:14509834-14509853 | None:intergenic | 35.0% | |
| !! | TCTGAAGGCATCATATAATG+TGG | - | chr3_3:14509933-14509952 | Msa0443500:intron | 35.0% |
| GGCATCATATAATGTGGATT+AGG | - | chr3_3:14509939-14509958 | Msa0443500:intron | 35.0% | |
| !! | CCTTAAAAGTCGGTTTTGTA+GGG | + | chr3_3:14509975-14509994 | None:intergenic | 35.0% |
| !! | ACCTTAAAAGTCGGTTTTGT+AGG | + | chr3_3:14509976-14509995 | None:intergenic | 35.0% |
| ACATCGATCACCTTAAAAGT+CGG | + | chr3_3:14509985-14510004 | None:intergenic | 35.0% | |
| ! | GTAAACTATGGTTAGTTGGT+TGG | - | chr3_3:14510115-14510134 | Msa0443500:intron | 35.0% |
| ACTCTACTATGAGTCTCTAT+GGG | - | chr3_3:14510228-14510247 | Msa0443500:intron | 35.0% | |
| !! | GTGCATAAGAGTATTCATGT+GGG | + | chr3_3:14510259-14510278 | None:intergenic | 35.0% |
| !! | AGTGCATAAGAGTATTCATG+TGG | + | chr3_3:14510260-14510279 | None:intergenic | 35.0% |
| TTAGTAATCATGGAATCCCA+GGG | + | chr3_3:14510311-14510330 | None:intergenic | 35.0% | |
| ! | GCTGATGATGTTAGTAATCA+TGG | + | chr3_3:14510321-14510340 | None:intergenic | 35.0% |
| TGCATTGTTACTCAACTTAG+TGG | - | chr3_3:14510381-14510400 | Msa0443500:intron | 35.0% | |
| GCATTGTTACTCAACTTAGT+GGG | - | chr3_3:14510382-14510401 | Msa0443500:intron | 35.0% | |
| TTACTCAACTTAGTGGGAAA+AGG | - | chr3_3:14510388-14510407 | Msa0443500:intron | 35.0% | |
| GACTCACATTCATGATAAGT+AGG | - | chr3_3:14510450-14510469 | Msa0443500:intron | 35.0% | |
| !! | TATCTGTCTACTTTAGAGTC+GGG | - | chr3_3:14510662-14510681 | Msa0443500:intron | 35.0% |
| TAAAATAGACGTTGGGATTC+TGG | - | chr3_3:14510705-14510724 | Msa0443500:intron | 35.0% | |
| !!! | GGATTTATAGGTTTTGAGGA+TGG | - | chr3_3:14510780-14510799 | Msa0443500:intron | 35.0% |
| AACTCACAACAAAACCAACT+GGG | + | chr3_3:14510907-14510926 | None:intergenic | 35.0% | |
| AAACTCACAACAAAACCAAC+TGG | + | chr3_3:14510908-14510927 | None:intergenic | 35.0% | |
| AATTCTAACAGCTGCAGTTA+TGG | - | chr3_3:14510998-14511017 | Msa0443500:intron | 35.0% | |
| ATTAAGAACCATACAAGCGT+AGG | + | chr3_3:14511081-14511100 | None:intergenic | 35.0% | |
| CACAAGTCATTGGAATAACA+AGG | + | chr3_3:14511385-14511404 | None:intergenic | 35.0% | |
| TGGAAAAAAGAAACATACCG+TGG | - | chr3_3:14511434-14511453 | Msa0443500:intron | 35.0% | |
| TTCATTGTGTTGGGTATGAA+GGG | - | chr3_3:14511644-14511663 | Msa0443500:intron | 35.0% | |
| AAACTTCATAAACCTTACCC+AGG | + | chr3_3:14511705-14511724 | None:intergenic | 35.0% | |
| GGGTAAGGTTTATGAAGTTT+AGG | - | chr3_3:14511705-14511724 | Msa0443500:intron | 35.0% | |
| TGGAAATTCTGCCTTCATTA+TGG | - | chr3_3:14511786-14511805 | Msa0443500:intron | 35.0% | |
| ! | TTTTGAACACACTACATGCT+CGG | + | chr3_3:14511877-14511896 | None:intergenic | 35.0% |
| TATTATGGTCCTCATCTTAC+TGG | - | chr3_3:14511906-14511925 | Msa0443500:intron | 35.0% | |
| !! | GTCTATCCTAGATTTGTTGA+TGG | - | chr3_3:14511980-14511999 | Msa0443500:intron | 35.0% |
| ! | TGGAAATTTTGCCTTCATTG+TGG | - | chr3_3:14512058-14512077 | Msa0443500:intron | 35.0% |
| GGACTAATAAAGAATAGGGT+AGG | + | chr3_3:14512292-14512311 | None:intergenic | 35.0% | |
| !!! | ATAGCATCGTTTTTTGGATC+AGG | + | chr3_3:14512313-14512332 | None:intergenic | 35.0% |
| AACGATGCTATTAGAACTGA+AGG | - | chr3_3:14512322-14512341 | Msa0443500:intron | 35.0% | |
| ACGATGCTATTAGAACTGAA+GGG | - | chr3_3:14512323-14512342 | Msa0443500:intron | 35.0% | |
| CTAGAAATTCCAACTATGTC+AGG | + | chr3_3:14512418-14512437 | None:intergenic | 35.0% | |
| CTTCAATTCTGTCCCAAAAT+AGG | + | chr3_3:14512473-14512492 | None:intergenic | 35.0% | |
| TTGAAGTCGACATATGTTGT+AGG | - | chr3_3:14512557-14512576 | Msa0443500:CDS | 35.0% | |
| TGAAGTCGACATATGTTGTA+GGG | - | chr3_3:14512558-14512577 | Msa0443500:CDS | 35.0% | |
| ! | TTTGTGATGTGGAAGAGTGT+AGG | + | chr3_3:14508205-14508224 | None:intergenic | 40.0% |
| ! | AGAGTGGATAGTTTGTGATG+TGG | + | chr3_3:14508216-14508235 | None:intergenic | 40.0% |
| AGTTGAAAAGGGTGAAAGAG+TGG | + | chr3_3:14508232-14508251 | None:intergenic | 40.0% | |
| TTGCTTTGCAAACCACCTAA+AGG | - | chr3_3:14508354-14508373 | Msa0443500:three_prime_UTR | 40.0% | |
| !! | CATTGGTCGTTGCTTGTTTT+TGG | - | chr3_3:14508504-14508523 | Msa0443500:intron | 40.0% |
| AGCTCAAGAAATTCAAGAGC+TGG | - | chr3_3:14508547-14508566 | Msa0443500:intron | 40.0% | |
| AGAAATTCAAGAGCTGGTGA+AGG | - | chr3_3:14508553-14508572 | Msa0443500:intron | 40.0% | |
| GAAATTCAAGAGCTGGTGAA+GGG | - | chr3_3:14508554-14508573 | Msa0443500:intron | 40.0% | |
| GTGTGGACCATGCATATTAA+TGG | - | chr3_3:14508619-14508638 | Msa0443500:intron | 40.0% | |
| !!! | GTGTTGCTTGTCACATGTTT+TGG | - | chr3_3:14508725-14508744 | Msa0443500:intron | 40.0% |
| ! | TCTTTATCTGAGGCTGATAC+AGG | + | chr3_3:14508797-14508816 | None:intergenic | 40.0% |
| TTCCACTTGTCTCACTGTAT+GGG | + | chr3_3:14509051-14509070 | None:intergenic | 40.0% | |
| ATTCCACTTGTCTCACTGTA+TGG | + | chr3_3:14509052-14509071 | None:intergenic | 40.0% | |
| TGGACACCGATAGAATTAGA+TGG | - | chr3_3:14509228-14509247 | Msa0443500:intron | 40.0% | |
| TATCTGTTGGACAGTCTGTT+TGG | - | chr3_3:14509405-14509424 | Msa0443500:intron | 40.0% | |
| TCTCTATGCAGAAGATAGCA+TGG | - | chr3_3:14509520-14509539 | Msa0443500:CDS | 40.0% | |
| TAGGCTATTCTTTGTACACG+GGG | - | chr3_3:14509573-14509592 | Msa0443500:intron | 40.0% | |
| CTACAAAGGAACAGTTTGCA+TGG | + | chr3_3:14509687-14509706 | None:intergenic | 40.0% | |
| !! | GTCTAGCCTTGTAATAGCAA+GGG | + | chr3_3:14509723-14509742 | None:intergenic | 40.0% |
| !! | TGTCTAGCCTTGTAATAGCA+AGG | + | chr3_3:14509724-14509743 | None:intergenic | 40.0% |
| TTGAGTTAAGCTCAACCCAA+TGG | + | chr3_3:14509751-14509770 | None:intergenic | 40.0% | |
| GAGTCTATCCAAGATCTGAT+GGG | + | chr3_3:14509915-14509934 | None:intergenic | 40.0% | |
| AGAGTCTATCCAAGATCTGA+TGG | + | chr3_3:14509916-14509935 | None:intergenic | 40.0% | |
| AGATCTTGGATAGACTCTGA+AGG | - | chr3_3:14509918-14509937 | Msa0443500:intron | 40.0% | |
| !! | CGGTTTTGTAGGGTTTAGTT+AGG | + | chr3_3:14509965-14509984 | None:intergenic | 40.0% |
| !! | CCCTACAAAACCGACTTTTA+AGG | - | chr3_3:14509972-14509991 | Msa0443500:intron | 40.0% |
| ATCTGTTAAGAGACTCGCAT+TGG | + | chr3_3:14510045-14510064 | None:intergenic | 40.0% | |
| ! | CTATGGTTAGTTGGTTGGTT+AGG | - | chr3_3:14510120-14510139 | Msa0443500:intron | 40.0% |
| ! | AGTTGGTTGGTTAGGTAGTT+AGG | - | chr3_3:14510128-14510147 | Msa0443500:intron | 40.0% |
| CACTCTACTATGAGTCTCTA+TGG | - | chr3_3:14510227-14510246 | Msa0443500:intron | 40.0% | |
| GTTAGTAATCATGGAATCCC+AGG | + | chr3_3:14510312-14510331 | None:intergenic | 40.0% | |
| AACAAGGATGAAGCCAATCT+TGG | - | chr3_3:14510353-14510372 | Msa0443500:intron | 40.0% | |
| AACTTAGTGGGAAAAGGCTT+TGG | - | chr3_3:14510394-14510413 | Msa0443500:intron | 40.0% | |
| !!! | GCTTGTTTTGTTGCATTTGC+AGG | + | chr3_3:14510734-14510753 | None:intergenic | 40.0% |
| AATGTTCCATTAGTCCCAGT+TGG | - | chr3_3:14510890-14510909 | Msa0443500:intron | 40.0% | |
| ACAAAACCAACTGGGACTAA+TGG | + | chr3_3:14510899-14510918 | None:intergenic | 40.0% | |
| CAGCTGTTAGAATTCCAAAG+GGG | + | chr3_3:14510992-14511011 | None:intergenic | 40.0% | |
| GCAGCTGTTAGAATTCCAAA+GGG | + | chr3_3:14510993-14511012 | None:intergenic | 40.0% | |
| TGCAGCTGTTAGAATTCCAA+AGG | + | chr3_3:14510994-14511013 | None:intergenic | 40.0% | |
| ATTTGACTCCTACGCTTGTA+TGG | - | chr3_3:14511070-14511089 | Msa0443500:intron | 40.0% | |
| CATGCAAGTTCACAAGTCAT+TGG | + | chr3_3:14511395-14511414 | None:intergenic | 40.0% | |
| ! | TGAAACTTGCTTTGAGTCCA+CGG | + | chr3_3:14511454-14511473 | None:intergenic | 40.0% |
| ATACATATCAGTGTCGTGTC+TGG | + | chr3_3:14511497-14511516 | None:intergenic | 40.0% | |
| ACCCAAATGTTGCAATTAGG+CGG | + | chr3_3:14511599-14511618 | None:intergenic | 40.0% | |
| GCAACCCAAATGTTGCAATT+AGG | + | chr3_3:14511602-14511621 | None:intergenic | 40.0% | |
| TCCAACACCTTCATTGTGTT+GGG | - | chr3_3:14511635-14511654 | Msa0443500:intron | 40.0% | |
| CTTCATACCCAACACAATGA+AGG | + | chr3_3:14511645-14511664 | None:intergenic | 40.0% | |
| CTTCATTGTGTTGGGTATGA+AGG | - | chr3_3:14511643-14511662 | Msa0443500:intron | 40.0% | |
| GTCATACATCTAGGCTATGT+GGG | + | chr3_3:14511683-14511702 | None:intergenic | 40.0% | |
| ATAGCCTAGATGTATGACCT+GGG | - | chr3_3:14511685-14511704 | Msa0443500:intron | 40.0% | |
| TTTGAACACACTACATGCTC+GGG | + | chr3_3:14511876-14511895 | None:intergenic | 40.0% | |
| GCACAACCCAAATTCAAAGA+TGG | - | chr3_3:14511952-14511971 | Msa0443500:intron | 40.0% | |
| GGAAAGCCATCAACAAATCT+AGG | + | chr3_3:14511989-14512008 | None:intergenic | 40.0% | |
| TACTCATCACCTGACATAGT+TGG | - | chr3_3:14512406-14512425 | Msa0443500:CDS | 40.0% | |
| TGGAAGAGAGCCATTGAAGA+TGG | + | chr3_3:14508180-14508199 | None:intergenic | 45.0% | |
| ! | GATGTGGAAGAGTGTAGGAA+TGG | + | chr3_3:14508200-14508219 | None:intergenic | 45.0% |
| GTGGATATGGTGAGAGGATA+AGG | + | chr3_3:14508315-14508334 | None:intergenic | 45.0% | |
| AAGTCAGTGGATATGGTGAG+AGG | + | chr3_3:14508321-14508340 | None:intergenic | 45.0% | |
| ! | TCTGAGGCTGATACAGGTAA+AGG | + | chr3_3:14508791-14508810 | None:intergenic | 45.0% |
| !! | TTAAGCCTGGTTTGGATGCA+CGG | - | chr3_3:14508935-14508954 | Msa0443500:intron | 45.0% |
| TTAATCCGTGCATCCAAACC+AGG | + | chr3_3:14508943-14508962 | None:intergenic | 45.0% | |
| !! | ATTAATAGGGGGAGGCACTT+AGG | - | chr3_3:14509661-14509680 | Msa0443500:intron | 45.0% |
| !! | CACAGTCCCTTGCTATTACA+AGG | - | chr3_3:14509714-14509733 | Msa0443500:intron | 45.0% |
| AAGGCTAGACAGTCACCATT+GGG | - | chr3_3:14509733-14509752 | Msa0443500:intron | 45.0% | |
| TGTCTAGTCCTAAGCGTGAT+GGG | + | chr3_3:14509865-14509884 | None:intergenic | 45.0% | |
| ATGTCTAGTCCTAAGCGTGA+TGG | + | chr3_3:14509866-14509885 | None:intergenic | 45.0% | |
| GCATTGGACGATATAAGGTC+TGG | + | chr3_3:14510029-14510048 | None:intergenic | 45.0% | |
| GACTCGCATTGGACGATATA+AGG | + | chr3_3:14510034-14510053 | None:intergenic | 45.0% | |
| ATCACTACGACCTTTATCCC+TGG | - | chr3_3:14510291-14510310 | Msa0443500:intron | 45.0% | |
| TCACTACGACCTTTATCCCT+GGG | - | chr3_3:14510292-14510311 | Msa0443500:intron | 45.0% | |
| TCATGGAATCCCAGGGATAA+AGG | + | chr3_3:14510304-14510323 | None:intergenic | 45.0% | |
| CATCCTTGTTGCATGCTAAG+AGG | + | chr3_3:14510343-14510362 | None:intergenic | 45.0% | |
| ACAAGTTTACCCCTATGCTG+CGG | + | chr3_3:14510487-14510506 | None:intergenic | 45.0% | |
| ATGTTGCAATTAGGCGGCTA+GGG | + | chr3_3:14511593-14511612 | None:intergenic | 45.0% | |
| AATGTTGCAATTAGGCGGCT+AGG | + | chr3_3:14511594-14511613 | None:intergenic | 45.0% | |
| AGCCGCCTAATTGCAACATT+TGG | - | chr3_3:14511594-14511613 | Msa0443500:intron | 45.0% | |
| GCCGCCTAATTGCAACATTT+GGG | - | chr3_3:14511595-14511614 | Msa0443500:intron | 45.0% | |
| !! | CAACACAATGAAGGTGTTGG+AGG | + | chr3_3:14511636-14511655 | None:intergenic | 45.0% |
| CTCCAACACCTTCATTGTGT+TGG | - | chr3_3:14511634-14511653 | Msa0443500:intron | 45.0% | |
| ! | ACCCAACACAATGAAGGTGT+TGG | + | chr3_3:14511639-14511658 | None:intergenic | 45.0% |
| GGTCATACATCTAGGCTATG+TGG | + | chr3_3:14511684-14511703 | None:intergenic | 45.0% | |
| CATAGCCTAGATGTATGACC+TGG | - | chr3_3:14511684-14511703 | Msa0443500:intron | 45.0% | |
| CTTACCCAGGTCATACATCT+AGG | + | chr3_3:14511692-14511711 | None:intergenic | 45.0% | |
| CTAGATGTATGACCTGGGTA+AGG | - | chr3_3:14511690-14511709 | Msa0443500:intron | 45.0% | |
| AGTTTAGGCAGCCCTAATTG+TGG | - | chr3_3:14511720-14511739 | Msa0443500:intron | 45.0% | |
| GAAGTGTGGGACCACAATTA+GGG | + | chr3_3:14511734-14511753 | None:intergenic | 45.0% | |
| TGAAGTGTGGGACCACAATT+AGG | + | chr3_3:14511735-14511754 | None:intergenic | 45.0% | |
| TCCCACACTTCAAGCTCATA+GGG | - | chr3_3:14511743-14511762 | Msa0443500:intron | 45.0% | |
| CTAGAGGAGGACCATAATGA+AGG | + | chr3_3:14511800-14511819 | None:intergenic | 45.0% | |
| ATCAACAGTTAGGGAGCTAG+AGG | + | chr3_3:14511816-14511835 | None:intergenic | 45.0% | |
| CTAGCTCCCTAACTGTTGAT+TGG | - | chr3_3:14511816-14511835 | Msa0443500:intron | 45.0% | |
| GGGAAGCCAATCAACAGTTA+GGG | + | chr3_3:14511825-14511844 | None:intergenic | 45.0% | |
| !! | GTCCACGTTTCTAGCTCATA+GGG | - | chr3_3:14511850-14511869 | Msa0443500:intron | 45.0% |
| ATGGTCCTCATCTTACTGGT+CGG | - | chr3_3:14511910-14511929 | Msa0443500:intron | 45.0% | |
| CAAAACCGACCAGTAAGATG+AGG | + | chr3_3:14511918-14511937 | None:intergenic | 45.0% | |
| !! | ATCCACACTTCTGGCTCAAA+GGG | - | chr3_3:14512015-14512034 | Msa0443500:intron | 45.0% |
| TCAAAGGGCCAGAACATGAT+GGG | - | chr3_3:14512030-14512049 | Msa0443500:intron | 45.0% | |
| CAGATTGAAGATGTGTAGCG+AGG | + | chr3_3:14512132-14512151 | None:intergenic | 45.0% | |
| !!! | TAAAAATTTAAAATTTTCAT+TGG | - | chr3_3:14508487-14508506 | Msa0443500:intron | 5.0% |
| GAAGAGGGAGAAACAGAGAG+AGG | + | chr3_3:14508267-14508286 | None:intergenic | 50.0% | |
| GATTTCTACGCGACATGGTG+TGG | - | chr3_3:14508602-14508621 | Msa0443500:intron | 50.0% | |
| CTCCCATACAGTGAGACAAG+TGG | - | chr3_3:14509046-14509065 | Msa0443500:intron | 50.0% | |
| CAAGGCTAGACAGTCACCAT+TGG | - | chr3_3:14509732-14509751 | Msa0443500:intron | 50.0% | |
| GTCTAGTCCTAAGCGTGATG+GGG | + | chr3_3:14509864-14509883 | None:intergenic | 50.0% | |
| AAGCGTAACATGACTGCGAG+TGG | - | chr3_3:14509889-14509908 | Msa0443500:intron | 50.0% | |
| CAGCCTCTTAGCATGCAACA+AGG | - | chr3_3:14510337-14510356 | Msa0443500:intron | 50.0% | |
| !! | AGAGTCGGGTTTGCTGTTCT+AGG | - | chr3_3:14510676-14510695 | Msa0443500:intron | 50.0% |
| TGAATTTGCACGCGACATGC+AGG | - | chr3_3:14511284-14511303 | Msa0443500:intron | 50.0% | |
| TGTTGCAATTAGGCGGCTAG+GGG | + | chr3_3:14511592-14511611 | None:intergenic | 50.0% | |
| GTCCCACACTTCAAGCTCAT+AGG | - | chr3_3:14511742-14511761 | Msa0443500:intron | 50.0% | |
| GCCCTATGAGCTTGAAGTGT+GGG | + | chr3_3:14511747-14511766 | None:intergenic | 50.0% | |
| AACAGTTAGGGAGCTAGAGG+AGG | + | chr3_3:14511813-14511832 | None:intergenic | 50.0% | |
| CGGGAAGCCAATCAACAGTT+AGG | + | chr3_3:14511826-14511845 | None:intergenic | 50.0% | |
| AGCTAGAAACGTGGACGATG+CGG | + | chr3_3:14511846-14511865 | None:intergenic | 50.0% | |
| !! | CGTCCACGTTTCTAGCTCAT+AGG | - | chr3_3:14511849-14511868 | Msa0443500:intron | 50.0% |
| ! | AGCCAGAAGTGTGGATGATG+CGG | + | chr3_3:14512011-14512030 | None:intergenic | 50.0% |
| !! | CATCCACACTTCTGGCTCAA+AGG | - | chr3_3:14512014-14512033 | Msa0443500:intron | 50.0% |
| CTCAAAGGGCCAGAACATGA+TGG | - | chr3_3:14512029-14512048 | Msa0443500:intron | 50.0% | |
| CAAAGGGCCAGAACATGATG+GGG | - | chr3_3:14512031-14512050 | Msa0443500:intron | 50.0% | |
| CCAAACACCCCATCATGTTC+TGG | + | chr3_3:14512041-14512060 | None:intergenic | 50.0% | |
| ! | CCAGAACATGATGGGGTGTT+TGG | - | chr3_3:14512038-14512057 | Msa0443500:intron | 50.0% |
| CTAGAGGAGGACCACAATGA+AGG | + | chr3_3:14512072-14512091 | None:intergenic | 50.0% | |
| ACGCAAATGCTGCAACTAGG+CGG | + | chr3_3:14512095-14512114 | None:intergenic | 50.0% | |
| GCAACGCAAATGCTGCAACT+AGG | + | chr3_3:14512098-14512117 | None:intergenic | 50.0% | |
| ! | TAGTCCTAAGCGTGATGGGG+AGG | + | chr3_3:14509861-14509880 | None:intergenic | 55.0% |
| AGACGCTTGACCGCAGCATA+GGG | - | chr3_3:14510474-14510493 | Msa0443500:intron | 55.0% | |
| TTGCAATTAGGCGGCTAGGG+GGG | + | chr3_3:14511590-14511609 | None:intergenic | 55.0% | |
| GTTGCAATTAGGCGGCTAGG+GGG | + | chr3_3:14511591-14511610 | None:intergenic | 55.0% | |
| ! | GGTGTTGGAGGCTGCAATGA+AGG | + | chr3_3:14511624-14511643 | None:intergenic | 55.0% |
| GGCCCTATGAGCTTGAAGTG+TGG | + | chr3_3:14511748-14511767 | None:intergenic | 55.0% | |
| TCCAACACACCCCACATGCT+CGG | + | chr3_3:14511770-14511789 | None:intergenic | 55.0% | |
| GCTAGAAACGTGGACGATGC+GGG | + | chr3_3:14511845-14511864 | None:intergenic | 55.0% | |
| GGCCCTATGAGCTAGAAACG+TGG | + | chr3_3:14511855-14511874 | None:intergenic | 55.0% | |
| TCCCGCATCATCCACACTTC+TGG | - | chr3_3:14512006-14512025 | Msa0443500:intron | 55.0% | |
| ! | GCCAGAAGTGTGGATGATGC+GGG | + | chr3_3:14512010-14512029 | None:intergenic | 55.0% |
| GTGTAGCGAGGCTGCAATGA+AGG | + | chr3_3:14512120-14512139 | None:intergenic | 55.0% | |
| CGTACCTCCCCATCACGCTT+AGG | - | chr3_3:14509854-14509873 | Msa0443500:intron | 60.0% | |
| GCGAGTGGCCCATCAGATCT+TGG | - | chr3_3:14509904-14509923 | Msa0443500:intron | 60.0% | |
| CAGACGCTTGACCGCAGCAT+AGG | - | chr3_3:14510473-14510492 | Msa0443500:intron | 60.0% | |
| GACGCTTGACCGCAGCATAG+GGG | - | chr3_3:14510475-14510494 | Msa0443500:intron | 60.0% | |
| TGCAATTAGGCGGCTAGGGG+GGG | + | chr3_3:14511589-14511608 | None:intergenic | 60.0% | |
| CTCATAGGGCCCGAGCATGT+GGG | - | chr3_3:14511757-14511776 | Msa0443500:intron | 60.0% | |
| TCATAGGGCCCGAGCATGTG+GGG | - | chr3_3:14511758-14511777 | Msa0443500:intron | 60.0% | |
| CCAACACACCCCACATGCTC+GGG | + | chr3_3:14511769-14511788 | None:intergenic | 60.0% | |
| GGCCCTTTGAGCCAGAAGTG+TGG | + | chr3_3:14512020-14512039 | None:intergenic | 60.0% | |
| TGCAACTAGGCGGCTAGAGG+AGG | + | chr3_3:14512085-14512104 | None:intergenic | 60.0% | |
| TGCTGCAACTAGGCGGCTAG+AGG | + | chr3_3:14512088-14512107 | None:intergenic | 60.0% | |
| CAATTAGGCGGCTAGGGGGG+GGG | + | chr3_3:14511587-14511606 | None:intergenic | 65.0% | |
| GCAATTAGGCGGCTAGGGGG+GGG | + | chr3_3:14511588-14511607 | None:intergenic | 65.0% | |
| GCTCATAGGGCCCGAGCATG+TGG | - | chr3_3:14511756-14511775 | Msa0443500:intron | 65.0% | |
| CCCGAGCATGTGGGGTGTGT+TGG | - | chr3_3:14511766-14511785 | Msa0443500:intron | 65.0% | |
| GGGGGGGATTGCAGCGAAGG+AGG | + | chr3_3:14511571-14511590 | None:intergenic | 70.0% | |
| AGGGGGGGGGATTGCAGCGA+AGG | + | chr3_3:14511574-14511593 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 14508126 | 14512642 | 14508126 | ID=Msa0443500;Name=Msa0443500 |
| chr3_3 | mRNA | 14508126 | 14512642 | 14508126 | ID=Msa0443500-mRNA-1;Parent=Msa0443500;Name=Msa0443500-mRNA-1;_AED=0.06;_eAED=0.06;_QI=60|1|1|1|1|1|4|249|179 |
| chr3_3 | exon | 14508126 | 14508491 | 14508126 | ID=Msa0443500-mRNA-1:exon:3217;Parent=Msa0443500-mRNA-1 |
| chr3_3 | exon | 14509463 | 14509543 | 14509463 | ID=Msa0443500-mRNA-1:exon:3216;Parent=Msa0443500-mRNA-1 |
| chr3_3 | exon | 14512110 | 14512232 | 14512110 | ID=Msa0443500-mRNA-1:exon:3215;Parent=Msa0443500-mRNA-1 |
| chr3_3 | exon | 14512364 | 14512642 | 14512364 | ID=Msa0443500-mRNA-1:exon:3214;Parent=Msa0443500-mRNA-1 |
| chr3_3 | five_prime_UTR | 14512583 | 14512642 | 14512583 | ID=Msa0443500-mRNA-1:five_prime_utr;Parent=Msa0443500-mRNA-1 |
| chr3_3 | CDS | 14512364 | 14512582 | 14512364 | ID=Msa0443500-mRNA-1:cds;Parent=Msa0443500-mRNA-1 |
| chr3_3 | CDS | 14512110 | 14512232 | 14512110 | ID=Msa0443500-mRNA-1:cds;Parent=Msa0443500-mRNA-1 |
| chr3_3 | CDS | 14509463 | 14509543 | 14509463 | ID=Msa0443500-mRNA-1:cds;Parent=Msa0443500-mRNA-1 |
| chr3_3 | CDS | 14508375 | 14508491 | 14508375 | ID=Msa0443500-mRNA-1:cds;Parent=Msa0443500-mRNA-1 |
| chr3_3 | three_prime_UTR | 14508126 | 14508374 | 14508126 | ID=Msa0443500-mRNA-1:three_prime_utr;Parent=Msa0443500-mRNA-1 |
| Gene Sequence |
| Protein sequence |
