Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719900 | XP_003613080.1 | 96.703 | 182 | 6 | 0 | 1 | 182 | 1 | 182 | 1.96e-126 | 363 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719900 | sp|Q8LDD3|CUT1D_ARATH | 41.919 | 198 | 93 | 3 | 1 | 183 | 1 | 191 | 1.75e-43 | 146 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719900 | G7JXQ3 | 96.703 | 182 | 6 | 0 | 1 | 182 | 1 | 182 | 9.36e-127 | 363 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025070 | Msa0719900 | 0.809975 | 1.450315e-50 | -8.615850e-47 |
| Msa0025290 | Msa0719900 | 0.828369 | 9.342664e-55 | -8.615850e-47 |
| Msa0027020 | Msa0719900 | 0.803973 | 2.699376e-49 | -8.615850e-47 |
| Msa0027250 | Msa0719900 | 0.820249 | 7.578046e-53 | -8.615850e-47 |
| Msa0047660 | Msa0719900 | 0.846426 | 2.188947e-59 | -8.615850e-47 |
| Msa0051960 | Msa0719900 | -0.835511 | 1.608096e-56 | -8.615850e-47 |
| Msa0060710 | Msa0719900 | 0.804112 | 2.526109e-49 | -8.615850e-47 |
| Msa0075160 | Msa0719900 | 0.818769 | 1.648666e-52 | -8.615850e-47 |
| Msa0075820 | Msa0719900 | 0.804404 | 2.195891e-49 | -8.615850e-47 |
| Msa0101960 | Msa0719900 | -0.842221 | 2.952461e-58 | -8.615850e-47 |
| Msa0112550 | Msa0719900 | 0.826432 | 2.722137e-54 | -8.615850e-47 |
| Msa0603690 | Msa0719900 | 0.824728 | 6.898311e-54 | -8.615850e-47 |
| Msa0608250 | Msa0719900 | 0.841853 | 3.694371e-58 | -8.615850e-47 |
| Msa0637590 | Msa0719900 | -0.800523 | 1.385168e-48 | -8.615850e-47 |
| Msa0639040 | Msa0719900 | 0.807639 | 4.580896e-50 | -8.615850e-47 |
| Msa0645800 | Msa0719900 | 0.869251 | 3.562475e-66 | -8.615850e-47 |
| Msa0654490 | Msa0719900 | 0.807996 | 3.847508e-50 | -8.615850e-47 |
| Msa0685110 | Msa0719900 | 0.863913 | 1.772939e-64 | -8.615850e-47 |
| Msa0685500 | Msa0719900 | 0.862900 | 3.651216e-64 | -8.615850e-47 |
| Msa0691320 | Msa0719900 | 0.862684 | 4.257131e-64 | -8.615850e-47 |
| Msa0706790 | Msa0719900 | 0.813760 | 2.173949e-51 | -8.615850e-47 |
| Msa0715670 | Msa0719900 | -0.818334 | 2.069765e-52 | -8.615850e-47 |
| Msa0719900 | Msa0753590 | 0.815180 | 1.055118e-51 | -8.615850e-47 |
| Msa0719900 | Msa0784780 | 0.822383 | 2.439387e-53 | -8.615850e-47 |
| Msa0719900 | Msa0792490 | 0.800715 | 1.265553e-48 | -8.615850e-47 |
| Msa0719900 | Msa0804690 | 0.963830 | 1.442395e-122 | -8.615850e-47 |
| Msa0719900 | Msa0858250 | 0.830008 | 3.739740e-55 | -8.615850e-47 |
| Msa0719900 | Msa0882480 | 0.840679 | 7.521905e-58 | -8.615850e-47 |
| Msa0719900 | Msa0925940 | -0.817179 | 3.771305e-52 | -8.615850e-47 |
| Msa0719900 | Msa0958960 | 0.821205 | 4.569575e-53 | -8.615850e-47 |
| Msa0719900 | Msa0966590 | -0.819715 | 1.004160e-52 | -8.615850e-47 |
| Msa0719900 | Msa0968470 | 0.816065 | 6.700290e-52 | -8.615850e-47 |
| Msa0719900 | Msa0978540 | 0.807930 | 3.972958e-50 | -8.615850e-47 |
| Msa0719900 | Msa1031460 | -0.800913 | 1.152932e-48 | -8.615850e-47 |
| Msa0719900 | Msa1058550 | 0.825309 | 5.029735e-54 | -8.615850e-47 |
| Msa0719900 | Msa1080610 | 0.819576 | 1.079913e-52 | -8.615850e-47 |
| Msa0719900 | Msa1080680 | 0.819244 | 1.285844e-52 | -8.615850e-47 |
| Msa0719900 | Msa1082640 | 0.801756 | 7.746993e-49 | -8.615850e-47 |
| Msa0719900 | Msa1091460 | 0.816868 | 4.429793e-52 | -8.615850e-47 |
| Msa0719900 | Msa1116840 | -0.815420 | 9.331698e-52 | -8.615850e-47 |
| Msa0719900 | Msa1124530 | 0.825690 | 4.085544e-54 | -8.615850e-47 |
| Msa0719900 | Msa1126320 | 0.841982 | 3.414016e-58 | -8.615850e-47 |
| Msa0719900 | Msa1148370 | -0.813869 | 2.056888e-51 | -8.615850e-47 |
| Msa0719900 | Msa1156100 | 0.813130 | 2.990174e-51 | -8.615850e-47 |
| Msa0719900 | Msa1163130 | 0.842549 | 2.416334e-58 | -8.615850e-47 |
| Msa0719900 | Msa1163190 | 0.827362 | 1.631070e-54 | -8.615850e-47 |
| Msa0719900 | Msa1163230 | 0.800808 | 1.211322e-48 | -8.615850e-47 |
| Msa0719900 | Msa1164720 | 0.870799 | 1.110808e-66 | -8.615850e-47 |
| Msa0719900 | Msa1167150 | 0.822391 | 2.428607e-53 | -8.615850e-47 |
| Msa0719900 | Msa1173800 | -0.832196 | 1.085120e-55 | -8.615850e-47 |
| Msa0719900 | Msa1203320 | 0.809957 | 1.463690e-50 | -8.615850e-47 |
| Msa0719900 | Msa1233810 | -0.804591 | 2.006696e-49 | -8.615850e-47 |
| Msa0719900 | Msa1235620 | 0.821393 | 4.136087e-53 | -8.615850e-47 |
| Msa0719900 | Msa1256060 | -0.807593 | 4.685071e-50 | -8.615850e-47 |
| Msa0719900 | Msa1298390 | 0.820758 | 5.791661e-53 | -8.615850e-47 |
| Msa0719900 | Msa1303690 | 0.803156 | 3.987664e-49 | -8.615850e-47 |
| Msa0719900 | Msa1306830 | -0.812250 | 4.659272e-51 | -8.615850e-47 |
| Msa0719900 | Msa1325560 | 0.822565 | 2.212939e-53 | -8.615850e-47 |
| Msa0719900 | Msa1350130 | 0.828297 | 9.722705e-55 | -8.615850e-47 |
| Msa0719900 | Msa1363170 | 0.803955 | 2.723475e-49 | -8.615850e-47 |
| Msa0719900 | Msa1373930 | 0.801705 | 7.938349e-49 | -8.615850e-47 |
| Msa0719900 | Msa1388010 | 0.800824 | 1.202035e-48 | -8.615850e-47 |
| Msa0719900 | Msa1395250 | -0.832094 | 1.149724e-55 | -8.615850e-47 |
| Msa0719900 | Msa1462700 | 0.817336 | 3.476792e-52 | -8.615850e-47 |
| Msa0126000 | Msa0719900 | 0.852081 | 5.834471e-61 | -8.615850e-47 |
| Msa0129770 | Msa0719900 | -0.824653 | 7.184278e-54 | -8.615850e-47 |
| Msa0138680 | Msa0719900 | 0.868709 | 5.336630e-66 | -8.615850e-47 |
| Msa0145590 | Msa0719900 | 0.817312 | 3.520175e-52 | -8.615850e-47 |
| Msa0162170 | Msa0719900 | 0.805560 | 1.258508e-49 | -8.615850e-47 |
| Msa0167500 | Msa0719900 | 0.820098 | 8.208500e-53 | -8.615850e-47 |
| Msa0167570 | Msa0719900 | 0.832765 | 7.841357e-56 | -8.615850e-47 |
| Msa0168410 | Msa0719900 | 0.865877 | 4.293828e-65 | -8.615850e-47 |
| Msa0172380 | Msa0719900 | -0.826501 | 2.620600e-54 | -8.615850e-47 |
| Msa0211590 | Msa0719900 | 0.806686 | 7.292135e-50 | -8.615850e-47 |
| Msa0237690 | Msa0719900 | 0.804750 | 1.859343e-49 | -8.615850e-47 |
| Msa0368210 | Msa0719900 | 0.813389 | 2.624122e-51 | -8.615850e-47 |
| Msa0386230 | Msa0719900 | 0.820997 | 5.102123e-53 | -8.615850e-47 |
| Msa0403470 | Msa0719900 | 0.804158 | 2.470335e-49 | -8.615850e-47 |
| Msa0444770 | Msa0719900 | 0.831822 | 1.342255e-55 | -8.615850e-47 |
| Msa0462240 | Msa0719900 | 0.813422 | 2.580997e-51 | -8.615850e-47 |
| Msa0480090 | Msa0719900 | 0.810428 | 1.158512e-50 | -8.615850e-47 |
| Msa0266330 | Msa0719900 | 0.802832 | 4.652543e-49 | -8.615850e-47 |
| Msa0298820 | Msa0719900 | 0.801905 | 7.221324e-49 | -8.615850e-47 |
| Msa0299530 | Msa0719900 | 0.834562 | 2.790574e-56 | -8.615850e-47 |
| Msa0341950 | Msa0719900 | 0.804362 | 2.240119e-49 | -8.615850e-47 |
| Msa0504310 | Msa0719900 | 0.813609 | 2.347034e-51 | -8.615850e-47 |
| Msa0512950 | Msa0719900 | 0.801124 | 1.043921e-48 | -8.615850e-47 |
| Msa0522820 | Msa0719900 | 0.805785 | 1.128566e-49 | -8.615850e-47 |
| Msa0530730 | Msa0719900 | -0.814174 | 1.762160e-51 | -8.615850e-47 |
| Msa0535400 | Msa0719900 | -0.811099 | 8.292549e-51 | -8.615850e-47 |
| Msa0542060 | Msa0719900 | 0.857660 | 1.403132e-62 | -8.615850e-47 |
| Msa0548650 | Msa0719900 | 0.826646 | 2.420237e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719900 | MtrunA17_Chr5g0412411 | 95.652 | 184 | 6 | 1 | 1 | 182 | 1 | 184 | 1.54e-128 | 358 |
| Msa0719900 | MtrunA17_Chr7g0275281 | 52.128 | 94 | 44 | 1 | 90 | 183 | 69 | 161 | 2.73e-27 | 100 |
| Msa0719900 | MtrunA17_Chr4g0004811 | 45.946 | 74 | 40 | 0 | 108 | 181 | 72 | 145 | 6.52e-17 | 73.6 |
| Msa0719900 | MtrunA17_Chr7g0276381 | 35.897 | 117 | 69 | 3 | 67 | 181 | 65 | 177 | 5.87e-15 | 69.3 |
| Msa0719900 | MtrunA17_Chr8g0345861 | 40.000 | 65 | 39 | 0 | 118 | 182 | 105 | 169 | 3.63e-14 | 67.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0719900 | AT4G38100.1 | 41.919 | 198 | 93 | 3 | 1 | 183 | 1 | 191 | 1.78e-44 | 146 |
| Msa0719900 | AT4G38100.2 | 50.360 | 139 | 62 | 1 | 45 | 183 | 20 | 151 | 1.30e-41 | 137 |
| Msa0719900 | AT4G01150.1 | 57.447 | 94 | 39 | 1 | 90 | 183 | 72 | 164 | 5.17e-30 | 108 |
| Msa0719900 | AT1G52220.2 | 45.946 | 74 | 40 | 0 | 108 | 181 | 81 | 154 | 1.45e-15 | 70.9 |
| Msa0719900 | AT1G52220.1 | 45.946 | 74 | 40 | 0 | 108 | 181 | 82 | 155 | 1.54e-15 | 70.9 |
| Msa0719900 | AT2G46820.2 | 37.179 | 78 | 49 | 0 | 106 | 183 | 97 | 174 | 3.03e-15 | 70.5 |
| Msa0719900 | AT2G46820.1 | 37.179 | 78 | 49 | 0 | 106 | 183 | 97 | 174 | 3.03e-15 | 70.5 |
| Msa0719900 | AT1G52220.3 | 52.000 | 50 | 24 | 0 | 132 | 181 | 77 | 126 | 6.75e-12 | 60.5 |
Find 71 sgRNAs with CRISPR-Local
Find 264 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACCACTTCTCTTGCTGTTTA+TGG | 0.133297 | 5_1:+15550234 | Msa0719900:CDS |
| TCGGAGGAAAAGAGGGTTTA+TGG | 0.185997 | 5_1:-15545838 | None:intergenic |
| CCATCAGGCAACACTTCCTT+TGG | 0.237654 | 5_1:-15546728 | None:intergenic |
| AGCGAAGGAATTGGGAAGTT+TGG | 0.246871 | 5_1:-15545810 | None:intergenic |
| CACAGCTCCTTTCCTCTGCT+TGG | 0.256029 | 5_1:+15550752 | Msa0719900:three_prime_UTR |
| CTGTTGCCCTTACATTTCTA+AGG | 0.263690 | 5_1:-15546592 | None:intergenic |
| CTAGCCCTTTATATACAAAA+TGG | 0.285092 | 5_1:-15545707 | None:intergenic |
| TAGGGCTTGGATATTCATTA+TGG | 0.318225 | 5_1:+15550437 | Msa0719900:CDS |
| CCCTACAACTTCGAACAGTT+TGG | 0.332383 | 5_1:-15550419 | None:intergenic |
| GTTACATTTCGTCTAGTTAA+GGG | 0.339090 | 5_1:+15550704 | Msa0719900:three_prime_UTR |
| CTTCCTTCACAATTCACAAA+TGG | 0.354354 | 5_1:+15545757 | Msa0719900:exon |
| AGTTACATTTCGTCTAGTTA+AGG | 0.363304 | 5_1:+15550703 | Msa0719900:three_prime_UTR |
| TGGTGAAAAGCGAAGGAATT+GGG | 0.370089 | 5_1:-15545818 | None:intergenic |
| GAACTCAAGGAACAAGTTCT+TGG | 0.374644 | 5_1:+15550605 | Msa0719900:CDS |
| ACAGCTCCTTTCCTCTGCTT+GGG | 0.389335 | 5_1:+15550753 | Msa0719900:three_prime_UTR |
| TTCCTTCACAATTCACAAAT+GGG | 0.396725 | 5_1:+15545758 | Msa0719900:exon |
| TGGTTAACTTCGGCCGTTGT+TGG | 0.408848 | 5_1:+15550279 | Msa0719900:CDS |
| TCTCTTGCTGTTTATGGTGG+TGG | 0.413364 | 5_1:+15550240 | Msa0719900:CDS |
| CTGTTCGAAGTTGTAGGGCT+TGG | 0.415379 | 5_1:+15550424 | Msa0719900:CDS |
| CCTACAACTTCGAACAGTTT+GGG | 0.418578 | 5_1:-15550418 | None:intergenic |
| CATCAGGCAACACTTCCTTT+GGG | 0.427132 | 5_1:-15546727 | None:intergenic |
| AACGGCAGGCCTTCTCCATC+AGG | 0.429232 | 5_1:-15546743 | None:intergenic |
| CGAGATAAGAGTGCATGTTT+CGG | 0.450142 | 5_1:-15545857 | None:intergenic |
| ATGGTGAAAAGCGAAGGAAT+TGG | 0.452245 | 5_1:-15545819 | None:intergenic |
| AGTTAACCACAGGGCCACTA+TGG | 0.453404 | 5_1:-15550265 | None:intergenic |
| CCCAAACTGTTCGAAGTTGT+AGG | 0.459632 | 5_1:+15550418 | Msa0719900:CDS |
| CCAAACTGTTCGAAGTTGTA+GGG | 0.475613 | 5_1:+15550419 | Msa0719900:CDS |
| TGATGGTGTGATAACTTTAG+AGG | 0.485413 | 5_1:+15546664 | Msa0719900:CDS |
| TGCATGTTTCGGAGGAAAAG+AGG | 0.495492 | 5_1:-15545846 | None:intergenic |
| GCAGAGAAACAGAGAGGAGC+TGG | 0.506142 | 5_1:+15550568 | Msa0719900:intron |
| GAGGAGAATTCAAGCGGTGC+TGG | 0.507621 | 5_1:+15546620 | Msa0719900:CDS |
| GCAGAGGAAAGGAGCTGTGA+GGG | 0.508755 | 5_1:-15550748 | None:intergenic |
| GAGGTGGTGAGTTGAAGTGA+AGG | 0.521316 | 5_1:-15545735 | None:intergenic |
| CAATGAAACTGTGGAGAATG+AGG | 0.527662 | 5_1:+15546703 | Msa0719900:CDS |
| AGGAAAGGAGCTGTGAGGGA+TGG | 0.539206 | 5_1:-15550744 | None:intergenic |
| GCAACACACGATAGAAGAAA+AGG | 0.539400 | 5_1:-15550797 | None:intergenic |
| CCAAAGGAAGTGTTGCCTGA+TGG | 0.551553 | 5_1:+15546728 | Msa0719900:CDS |
| GGAGCTGGCCAATAAAATAG+AGG | 0.555400 | 5_1:+15550583 | Msa0719900:CDS |
| TATCGAGCAAATCCAACGGC+AGG | 0.560415 | 5_1:-15546757 | None:intergenic |
| ACTTCTCTTGCTGTTTATGG+TGG | 0.569238 | 5_1:+15550237 | Msa0719900:CDS |
| AGTGGCCCTGTGGTTAACTT+CGG | 0.569289 | 5_1:+15550269 | Msa0719900:CDS |
| TGAGAGCCCAAGCAGAGGAA+AGG | 0.571811 | 5_1:-15550759 | None:intergenic |
| GGAAGTTTGGAAAGAGTGAG+AGG | 0.573274 | 5_1:-15545797 | None:intergenic |
| AGGTGGTGAGTTGAAGTGAA+GGG | 0.582287 | 5_1:-15545734 | None:intergenic |
| GCATGTTTCGGAGGAAAAGA+GGG | 0.584713 | 5_1:-15545845 | None:intergenic |
| CAATAAAATAGAGGAACTCA+AGG | 0.589157 | 5_1:+15550592 | Msa0719900:CDS |
| ACCATAAACAGCAAGAGAAG+TGG | 0.590884 | 5_1:-15550235 | None:intergenic |
| TGCTATTGATTCTATCCCAG+TGG | 0.595990 | 5_1:+15550302 | Msa0719900:CDS |
| GATAAGAGTGCATGTTTCGG+AGG | 0.597339 | 5_1:-15545854 | None:intergenic |
| CAACGGCCGAAGTTAACCAC+AGG | 0.598421 | 5_1:-15550275 | None:intergenic |
| TCCTTCACAATTCACAAATG+GGG | 0.599223 | 5_1:+15545759 | Msa0719900:exon |
| TGATGGAGAAGGCCTGCCGT+TGG | 0.606276 | 5_1:+15546745 | Msa0719900:CDS |
| GCCCCATTTGTGAATTGTGA+AGG | 0.606694 | 5_1:-15545760 | None:intergenic |
| GGGTTTATGGTGAAAAGCGA+AGG | 0.612257 | 5_1:-15545825 | None:intergenic |
| TTATGGTGGTGGTGCCATAG+TGG | 0.612837 | 5_1:+15550251 | Msa0719900:CDS |
| AGCACCGCTTGAATTCTCCT+CGG | 0.618327 | 5_1:-15546618 | None:intergenic |
| TGTAAGGGCAACAGCATCCG+AGG | 0.621783 | 5_1:+15546601 | Msa0719900:CDS |
| GCAGTTGAGAGCCCAAGCAG+AGG | 0.626601 | 5_1:-15550764 | None:intergenic |
| TGTGGAGAATGAGGACCCAA+AGG | 0.634542 | 5_1:+15546712 | Msa0719900:CDS |
| GAAGTGTTGCCTGATGGAGA+AGG | 0.638111 | 5_1:+15546734 | Msa0719900:CDS |
| ATACCTTGAAAAGCAAGTAA+CGG | 0.655475 | 5_1:-15550468 | None:intergenic |
| AAATGGATACAATGAAACTG+TGG | 0.659004 | 5_1:+15546694 | Msa0719900:CDS |
| AGAATCAATAGCACCAACAA+CGG | 0.660305 | 5_1:-15550292 | None:intergenic |
| AGCAGAGGAAAGGAGCTGTG+AGG | 0.661464 | 5_1:-15550749 | None:intergenic |
| AGCTTATCGAGCAAATCCAA+CGG | 0.662252 | 5_1:-15546761 | None:intergenic |
| TAAACTGCAGAGAAACAGAG+AGG | 0.668243 | 5_1:+15550562 | Msa0719900:intron |
| GTGAATTGTGAAGGAAGAGG+TGG | 0.672859 | 5_1:-15545751 | None:intergenic |
| TTTGTGAATTGTGAAGGAAG+AGG | 0.677503 | 5_1:-15545754 | None:intergenic |
| GTGGTGCCATAGTGGCCCTG+TGG | 0.698214 | 5_1:+15550259 | Msa0719900:CDS |
| GCATCCGAGGAGAATTCAAG+CGG | 0.703423 | 5_1:+15546614 | Msa0719900:CDS |
| AACGGCCGAAGTTAACCACA+GGG | 0.725785 | 5_1:-15550274 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTCAAAATTTCATTTTTAAT+TGG | + | chr5_1:15546333-15546352 | Msa0719900:intron | 10.0% |
| !!! | TTTTTAATTGGATAAAATTA+AGG | + | chr5_1:15546345-15546364 | Msa0719900:intron | 10.0% |
| !!! | TTTTAATTGGATAAAATTAA+GGG | + | chr5_1:15546346-15546365 | Msa0719900:intron | 10.0% |
| !!! | TTTTAAAATAAAGTCAATTT+AGG | - | chr5_1:15548411-15548430 | None:intergenic | 10.0% |
| !!! | ATATAATAAAATTTAGAGTT+TGG | - | chr5_1:15549319-15549338 | None:intergenic | 10.0% |
| !! | ATAATATAGCATCTTTAAAT+TGG | + | chr5_1:15547158-15547177 | Msa0719900:intron | 15.0% |
| !! | TACAAAACAATCAAAAAAAA+TGG | - | chr5_1:15547792-15547811 | None:intergenic | 15.0% |
| !!! | ACAAAATTTAATTTAGGTTT+TGG | + | chr5_1:15548757-15548776 | Msa0719900:intron | 15.0% |
| !! | AAATACAAACAAATCTAAAA+TGG | - | chr5_1:15549215-15549234 | None:intergenic | 15.0% |
| !!! | TTTTATTATATTCATGTGTT+TGG | + | chr5_1:15549328-15549347 | Msa0719900:intron | 15.0% |
| !!! | GAGTCAAAAATATATTTTTT+GGG | - | chr5_1:15549894-15549913 | None:intergenic | 15.0% |
| !!! | AATTTTTATTTGATAAGGTG+TGG | + | chr5_1:15546052-15546071 | Msa0719900:intron | 20.0% |
| !!! | TTTTAACTTCATAGAAATGA+AGG | + | chr5_1:15546159-15546178 | Msa0719900:intron | 20.0% |
| !!! | TTTAACTTCATAGAAATGAA+GGG | + | chr5_1:15546160-15546179 | Msa0719900:intron | 20.0% |
| !!! | AATCTTGTTAATTTAGCTTT+TGG | + | chr5_1:15546278-15546297 | Msa0719900:intron | 20.0% |
| !! | AATAAAAAATTCATGTGCAA+TGG | + | chr5_1:15546406-15546425 | Msa0719900:intron | 20.0% |
| !!! | TTTTAACTGCTTAAAAATGT+AGG | + | chr5_1:15546519-15546538 | Msa0719900:intron | 20.0% |
| !! | TTTAACTGCTTAAAAATGTA+GGG | + | chr5_1:15546520-15546539 | Msa0719900:intron | 20.0% |
| !!! | TTATTTCCACTGTTTTAAAT+TGG | + | chr5_1:15547351-15547370 | Msa0719900:intron | 20.0% |
| !!! | TGTATTAATTTTCATGTGTT+TGG | + | chr5_1:15547494-15547513 | Msa0719900:intron | 20.0% |
| !!! | TTTATTTTTGTGTGTTTGAT+TGG | + | chr5_1:15547930-15547949 | Msa0719900:intron | 20.0% |
| !! | TATATGGTTGAAATTTGAAT+TGG | - | chr5_1:15548305-15548324 | None:intergenic | 20.0% |
| !!! | AATAAAGTCAATTTAGGTTT+TGG | - | chr5_1:15548405-15548424 | None:intergenic | 20.0% |
| !!! | AATAAAGTGAATTTAGGTTT+TGG | - | chr5_1:15548465-15548484 | None:intergenic | 20.0% |
| !! | GTATACAATAAAGTGAATTT+AGG | - | chr5_1:15548471-15548490 | None:intergenic | 20.0% |
| !!! | GTACAGACAAAATTTAATTT+AGG | + | chr5_1:15548751-15548770 | Msa0719900:intron | 20.0% |
| !!! | TTTGTTTTTGTTTTTGAAGA+AGG | + | chr5_1:15548845-15548864 | Msa0719900:intron | 20.0% |
| !! | AACAGATTACAAATACTAAA+AGG | - | chr5_1:15549126-15549145 | None:intergenic | 20.0% |
| !!! | CATTAAATTTTTCATGTGTT+TGG | + | chr5_1:15549401-15549420 | Msa0719900:intron | 20.0% |
| !!! | TTTATTCAATTTTGTGTGTT+TGG | + | chr5_1:15549596-15549615 | Msa0719900:intron | 20.0% |
| !!! | AAAAATATATTTTTTGGGCT+CGG | - | chr5_1:15549889-15549908 | None:intergenic | 20.0% |
| !!! | GGAGTCAAAAATATATTTTT+TGG | - | chr5_1:15549895-15549914 | None:intergenic | 20.0% |
| !! | ACTTAATTCACAATCATATT+AGG | - | chr5_1:15550007-15550026 | None:intergenic | 20.0% |
| !! | AATAACAAATATATACCACT+GGG | - | chr5_1:15550320-15550339 | None:intergenic | 20.0% |
| !! | AAATAACAAATATATACCAC+TGG | - | chr5_1:15550321-15550340 | None:intergenic | 20.0% |
| !!! | TAATAACAAAAGTTGGTTTT+TGG | - | chr5_1:15550363-15550382 | None:intergenic | 20.0% |
| ! | TTCAATCTTTACCAAAAACT+AGG | + | chr5_1:15545887-15545906 | Msa0719900:intron | 25.0% |
| ! | TCAATCTTTACCAAAAACTA+GGG | + | chr5_1:15545888-15545907 | Msa0719900:intron | 25.0% |
| ! | AACAAGAAAAACAAGCAAAA+GGG | - | chr5_1:15545975-15545994 | None:intergenic | 25.0% |
| !! | CTTGTTAATTAAGCTTTTTG+AGG | + | chr5_1:15546102-15546121 | Msa0719900:intron | 25.0% |
| ! | TATAAAATATTCATGTGCTG+TGG | + | chr5_1:15546224-15546243 | Msa0719900:intron | 25.0% |
| !! | AATTAAGCTTTTGTAGCTTA+TGG | + | chr5_1:15546468-15546487 | Msa0719900:intron | 25.0% |
| !! | ATTAAGCTTTTGTAGCTTAT+GGG | + | chr5_1:15546469-15546488 | Msa0719900:intron | 25.0% |
| !!! | TTTGCGTTTTATGTTATTTC+AGG | + | chr5_1:15546560-15546579 | Msa0719900:intron | 25.0% |
| !! | AGTTTTCCTTAGAAATGTAA+GGG | + | chr5_1:15546586-15546605 | Msa0719900:CDS | 25.0% |
| ! | TCAGATTAGGAATACTAAAA+GGG | - | chr5_1:15546811-15546830 | None:intergenic | 25.0% |
| ! | ATGATACTACAGTTTATTGA+TGG | + | chr5_1:15546958-15546977 | Msa0719900:intron | 25.0% |
| !! | AAATTGGTTTATATGTGACA+TGG | + | chr5_1:15547174-15547193 | Msa0719900:intron | 25.0% |
| !! | TACAAACCAATTTAAAACAG+TGG | - | chr5_1:15547360-15547379 | None:intergenic | 25.0% |
| !! | ATTAATTTTCATGTGTTTGG+TGG | + | chr5_1:15547497-15547516 | Msa0719900:intron | 25.0% |
| !! | TTTGAATCTTGATGATACTT+CGG | + | chr5_1:15547624-15547643 | Msa0719900:intron | 25.0% |
| ! | AAATAGTCAAAAGACAAACA+CGG | - | chr5_1:15547969-15547988 | None:intergenic | 25.0% |
| ! | ATAGCATCAATAAATGTATG+CGG | + | chr5_1:15548247-15548266 | Msa0719900:intron | 25.0% |
| ! | CAACCATATAATTAATCCAA+TGG | + | chr5_1:15548315-15548334 | Msa0719900:intron | 25.0% |
| ! | CAACCATTGGATTAATTATA+TGG | - | chr5_1:15548321-15548340 | None:intergenic | 25.0% |
| ! | ATTATCAATCTTTCAACCAT+TGG | - | chr5_1:15548334-15548353 | None:intergenic | 25.0% |
| !!! | AAATGTCTGAGATTTTGAAT+AGG | + | chr5_1:15548532-15548551 | Msa0719900:intron | 25.0% |
| ! | CTGAAAGAGAAAAATGATAA+TGG | + | chr5_1:15548677-15548696 | Msa0719900:intron | 25.0% |
| !!! | AGAAAAAACTGATTTGTAGA+GGG | + | chr5_1:15548784-15548803 | Msa0719900:intron | 25.0% |
| ! | AATGTCACATATGAAGAATA+TGG | - | chr5_1:15549004-15549023 | None:intergenic | 25.0% |
| ! | TATTATATTCATGTGTTTGG+TGG | + | chr5_1:15549331-15549350 | Msa0719900:intron | 25.0% |
| !! | TACAAATCAATCTAAAACAG+TGG | - | chr5_1:15549462-15549481 | None:intergenic | 25.0% |
| !! | ATTTGTATTTCCATGTTTTG+TGG | + | chr5_1:15549475-15549494 | Msa0719900:intron | 25.0% |
| !! | TAAAGTGCTTAATGATACTT+TGG | + | chr5_1:15549531-15549550 | Msa0719900:intron | 25.0% |
| !!! | AAAATATATTTTTTGGGCTC+GGG | - | chr5_1:15549888-15549907 | None:intergenic | 25.0% |
| !!! | CATTTACGTTTGGTTATTTT+GGG | - | chr5_1:15550119-15550138 | None:intergenic | 25.0% |
| !! | ACATTTACGTTTGGTTATTT+TGG | - | chr5_1:15550120-15550139 | None:intergenic | 25.0% |
| ! | AAATCATAAATGTTGCAAAC+TGG | - | chr5_1:15550149-15550168 | None:intergenic | 25.0% |
| ! | AGGTTAGTAATAACAAAAGT+TGG | - | chr5_1:15550370-15550389 | None:intergenic | 25.0% |
| !! | GTTATTACTAACCTTTTTGT+CGG | + | chr5_1:15550376-15550395 | Msa0719900:intron | 25.0% |
| ! | CAAATACTATAACCAACATT+AGG | - | chr5_1:15550497-15550516 | None:intergenic | 25.0% |
| TTCCTTCACAATTCACAAAT+GGG | + | chr5_1:15545758-15545777 | Msa0719900:exon | 30.0% | |
| !! | AGAATGAAAACCCTAGTTTT+TGG | - | chr5_1:15545901-15545920 | None:intergenic | 30.0% |
| CAACAAGAAAAACAAGCAAA+AGG | - | chr5_1:15545976-15545995 | None:intergenic | 30.0% | |
| !! | CTTTTGCTTGTTTTTCTTGT+TGG | + | chr5_1:15545974-15545993 | Msa0719900:intron | 30.0% |
| !!! | AATTTAGCTTTTGGAGCAAA+TGG | + | chr5_1:15546287-15546306 | Msa0719900:intron | 30.0% |
| !!! | ATTTAGCTTTTGGAGCAAAT+GGG | + | chr5_1:15546288-15546307 | Msa0719900:intron | 30.0% |
| ! | CAGTTTTCCTTAGAAATGTA+AGG | + | chr5_1:15546585-15546604 | Msa0719900:CDS | 30.0% |
| TTGTTCAATGAAAAACGTGA+TGG | + | chr5_1:15546647-15546666 | Msa0719900:CDS | 30.0% | |
| ! | ACTTTAGAGGCTGATAAAAA+TGG | + | chr5_1:15546677-15546696 | Msa0719900:CDS | 30.0% |
| AAATGGATACAATGAAACTG+TGG | + | chr5_1:15546694-15546713 | Msa0719900:CDS | 30.0% | |
| TTAGGAATACTAAAAGGGAA+AGG | - | chr5_1:15546806-15546825 | None:intergenic | 30.0% | |
| CTCAGATTAGGAATACTAAA+AGG | - | chr5_1:15546812-15546831 | None:intergenic | 30.0% | |
| TAGAATGCTTTGTGATACTT+CGG | + | chr5_1:15546987-15547006 | Msa0719900:intron | 30.0% | |
| TGTTTGTAGTTATGACTAGT+TGG | + | chr5_1:15547070-15547089 | Msa0719900:intron | 30.0% | |
| TACATATACTGCATAGTACA+GGG | - | chr5_1:15547113-15547132 | None:intergenic | 30.0% | |
| GATGAAACTCAGTTTATTGA+TGG | + | chr5_1:15547400-15547419 | Msa0719900:intron | 30.0% | |
| !!! | GATGAAACTCAGTTTTTTGA+CGG | + | chr5_1:15547595-15547614 | Msa0719900:intron | 30.0% |
| TTAGTTATGACATGTTAGTG+TGG | + | chr5_1:15547722-15547741 | Msa0719900:intron | 30.0% | |
| TTCATCACAGCAAAACAAAA+TGG | - | chr5_1:15547818-15547837 | None:intergenic | 30.0% | |
| GATGAAACTCAGTTTATTGA+TGG | + | chr5_1:15547400-15547419 | Msa0719900:intron | 30.0% | |
| AATAGTCAAAAGACAAACAC+GGG | - | chr5_1:15547968-15547987 | None:intergenic | 30.0% | |
| GATGATACTCAGTTTATTGA+TGG | + | chr5_1:15548023-15548042 | Msa0719900:intron | 30.0% | |
| CCAATACTTTCAAGGAAAAA+TGG | - | chr5_1:15548144-15548163 | None:intergenic | 30.0% | |
| !! | CCATTTTTCCTTGAAAGTAT+TGG | + | chr5_1:15548141-15548160 | Msa0719900:intron | 30.0% |
| !!! | TTTTTCCTTGAAAGTATTGG+TGG | + | chr5_1:15548144-15548163 | Msa0719900:intron | 30.0% |
| ATAACATACAATCACCTACA+GGG | - | chr5_1:15548212-15548231 | None:intergenic | 30.0% | |
| GTTGAAATTTGAATTGGTAG+CGG | - | chr5_1:15548299-15548318 | None:intergenic | 30.0% | |
| TTCAAAATCTCAGACATTTG+CGG | - | chr5_1:15548531-15548550 | None:intergenic | 30.0% | |
| ! | AGATTTTGAATAGGAAGACA+TGG | + | chr5_1:15548541-15548560 | Msa0719900:intron | 30.0% |
| ! | GATTTTGAATAGGAAGACAT+GGG | + | chr5_1:15548542-15548561 | Msa0719900:intron | 30.0% |
| ! | TGGTATATGATAGAGCATTA+TGG | + | chr5_1:15548573-15548592 | Msa0719900:intron | 30.0% |
| !! | TCATTTTTCTCTTTCAGCTT+CGG | - | chr5_1:15548674-15548693 | None:intergenic | 30.0% |
| !! | CAGAAAAAACTGATTTGTAG+AGG | + | chr5_1:15548783-15548802 | Msa0719900:intron | 30.0% |
| !!! | TGATTTGTAGAGGGTTTTTT+TGG | + | chr5_1:15548793-15548812 | Msa0719900:intron | 30.0% |
| !! | ACTGCTTTTATTTCCATTCA+TGG | + | chr5_1:15549034-15549053 | Msa0719900:intron | 30.0% |
| TTCATCATAGCAACAAAACA+TGG | - | chr5_1:15549238-15549257 | None:intergenic | 30.0% | |
| AATAAAATGTAGAGTTGCTC+AGG | - | chr5_1:15549582-15549601 | None:intergenic | 30.0% | |
| ! | ATTCAATTTTGTGTGTTTGG+TGG | + | chr5_1:15549599-15549618 | Msa0719900:intron | 30.0% |
| ! | TACAAACCAATCTAAAACAG+TGG | - | chr5_1:15549655-15549674 | None:intergenic | 30.0% |
| TAGATTGCTTGATGAAACTT+CGG | + | chr5_1:15549725-15549744 | Msa0719900:intron | 30.0% | |
| !! | TGTTTTCATTTTTGCGCTTT+TGG | + | chr5_1:15549790-15549809 | Msa0719900:intron | 30.0% |
| AAGAATATCAAACGAACACA+GGG | - | chr5_1:15549950-15549969 | None:intergenic | 30.0% | |
| TGTATAGCAGTTAACTAAAC+AGG | - | chr5_1:15550081-15550100 | None:intergenic | 30.0% | |
| ! | TGGTTTGTAACATTTACGTT+TGG | - | chr5_1:15550129-15550148 | None:intergenic | 30.0% |
| ATAAGAATGAACCGACAAAA+AGG | - | chr5_1:15550390-15550409 | None:intergenic | 30.0% | |
| ATACCTTGAAAAGCAAGTAA+CGG | - | chr5_1:15550471-15550490 | None:intergenic | 30.0% | |
| ! | CTTGAGTTCCTCTATTTTAT+TGG | - | chr5_1:15550594-15550613 | None:intergenic | 30.0% |
| CAATAAAATAGAGGAACTCA+AGG | + | chr5_1:15550592-15550611 | Msa0719900:CDS | 30.0% | |
| AGTTACATTTCGTCTAGTTA+AGG | + | chr5_1:15550703-15550722 | Msa0719900:three_prime_UTR | 30.0% | |
| GTTACATTTCGTCTAGTTAA+GGG | + | chr5_1:15550704-15550723 | Msa0719900:three_prime_UTR | 30.0% | |
| TTTGTGAATTGTGAAGGAAG+AGG | - | chr5_1:15545757-15545776 | None:intergenic | 35.0% | |
| CTTCCTTCACAATTCACAAA+TGG | + | chr5_1:15545757-15545776 | Msa0719900:exon | 35.0% | |
| TCCTTCACAATTCACAAATG+GGG | + | chr5_1:15545759-15545778 | Msa0719900:exon | 35.0% | |
| !!! | AATTAAGCTTTTTGAGGCGA+TGG | + | chr5_1:15546108-15546127 | Msa0719900:intron | 35.0% |
| !!! | ATTAAGCTTTTTGAGGCGAT+GGG | + | chr5_1:15546109-15546128 | Msa0719900:intron | 35.0% |
| ACTTCATAGAAATGAAGGGA+AGG | + | chr5_1:15546164-15546183 | Msa0719900:intron | 35.0% | |
| AAAATTCATGTGCAATGGTG+TGG | + | chr5_1:15546411-15546430 | Msa0719900:intron | 35.0% | |
| ! | TGATGGTGTGATAACTTTAG+AGG | + | chr5_1:15546664-15546683 | Msa0719900:CDS | 35.0% |
| ATATACACGCTACTCAGATT+AGG | - | chr5_1:15546824-15546843 | None:intergenic | 35.0% | |
| ATCATCATAGCAACTCAACA+TGG | - | chr5_1:15546943-15546962 | None:intergenic | 35.0% | |
| CTACATATACTGCATAGTAC+AGG | - | chr5_1:15547114-15547133 | None:intergenic | 35.0% | |
| CTGTACTATGCAGTATATGT+AGG | + | chr5_1:15547112-15547131 | Msa0719900:intron | 35.0% | |
| ATGCAGTATATGTAGGTGAT+TGG | + | chr5_1:15547119-15547138 | Msa0719900:intron | 35.0% | |
| ! | TTGAGTGCTTGATGATACTT+CGG | + | chr5_1:15547429-15547448 | Msa0719900:intron | 35.0% |
| AATACAATGTAGAGTTGCTC+AGG | - | chr5_1:15547480-15547499 | None:intergenic | 35.0% | |
| !! | GTCTTTTGACTGTTTTGCAT+TGG | + | chr5_1:15547546-15547565 | Msa0719900:intron | 35.0% |
| ! | TTGAGTGCTTGATGATACTT+CGG | + | chr5_1:15547429-15547448 | Msa0719900:intron | 35.0% |
| ATCATCATAGCAACACAACA+TGG | - | chr5_1:15548009-15548028 | None:intergenic | 35.0% | |
| ! | TAGAGTGCTTGATGATACTT+CGG | + | chr5_1:15548052-15548071 | Msa0719900:intron | 35.0% |
| TAATCAATGAAGAGTTGCTC+AGG | - | chr5_1:15548103-15548122 | None:intergenic | 35.0% | |
| CATAACCACCAATACTTTCA+AGG | - | chr5_1:15548152-15548171 | None:intergenic | 35.0% | |
| CATAACATACAATCACCTAC+AGG | - | chr5_1:15548213-15548232 | None:intergenic | 35.0% | |
| AATCACTACTGCTAAGTTGT+CGG | + | chr5_1:15548498-15548517 | Msa0719900:intron | 35.0% | |
| GAAGTTGTGACAATATTCTG+TGG | + | chr5_1:15548971-15548990 | Msa0719900:intron | 35.0% | |
| TATTTCCATTCATGGAGAGA+AGG | + | chr5_1:15549042-15549061 | Msa0719900:intron | 35.0% | |
| ! | AGGTTCAGTGTAATTTTTGC+TGG | + | chr5_1:15547233-15547252 | Msa0719900:intron | 35.0% |
| GGATGATAAGCTTAATGCAA+AGG | + | chr5_1:15549083-15549102 | Msa0719900:intron | 35.0% | |
| CAAACTCAGAATTACTACAC+TGG | - | chr5_1:15549163-15549182 | None:intergenic | 35.0% | |
| !! | TTCATGTGTTTGGTGTATTC+AGG | + | chr5_1:15549411-15549430 | Msa0719900:intron | 35.0% |
| TTCATCATAGCCACAAAACA+TGG | - | chr5_1:15549488-15549507 | None:intergenic | 35.0% | |
| GATGAAACTCAGTTTCTTGA+CGG | + | chr5_1:15549502-15549521 | Msa0719900:intron | 35.0% | |
| !! | GTCTTTCCACTGTTTTAGAT+TGG | + | chr5_1:15549646-15549665 | Msa0719900:intron | 35.0% |
| GATGAAACTCAGTGTATTGA+TGG | + | chr5_1:15549696-15549715 | Msa0719900:intron | 35.0% | |
| AAAACAATGTAGAGTTGCTC+AGG | - | chr5_1:15549776-15549795 | None:intergenic | 35.0% | |
| ATGCTATCTGTCTCAAACTT+TGG | + | chr5_1:15549923-15549942 | Msa0719900:intron | 35.0% | |
| GAAGAATATCAAACGAACAC+AGG | - | chr5_1:15549951-15549970 | None:intergenic | 35.0% | |
| AGAATCAATAGCACCAACAA+CGG | - | chr5_1:15550295-15550314 | None:intergenic | 35.0% | |
| TAGGGCTTGGATATTCATTA+TGG | + | chr5_1:15550437-15550456 | Msa0719900:CDS | 35.0% | |
| !! | TTACCGTTACTTGCTTTTCA+AGG | + | chr5_1:15550465-15550484 | Msa0719900:CDS | 35.0% |
| ! | ATTTGCTGATATGTGCATGT+TGG | + | chr5_1:15550512-15550531 | Msa0719900:intron | 35.0% |
| TGGTGAAAAGCGAAGGAATT+GGG | - | chr5_1:15545821-15545840 | None:intergenic | 40.0% | |
| ATGGTGAAAAGCGAAGGAAT+TGG | - | chr5_1:15545822-15545841 | None:intergenic | 40.0% | |
| ! | CGAGATAAGAGTGCATGTTT+CGG | - | chr5_1:15545860-15545879 | None:intergenic | 40.0% |
| AATATTCATGTGCTGTGGTG+TGG | + | chr5_1:15546229-15546248 | Msa0719900:intron | 40.0% | |
| CTGTTGCCCTTACATTTCTA+AGG | - | chr5_1:15546595-15546614 | None:intergenic | 40.0% | |
| CAATGAAACTGTGGAGAATG+AGG | + | chr5_1:15546703-15546722 | Msa0719900:CDS | 40.0% | |
| AGCTTATCGAGCAAATCCAA+CGG | - | chr5_1:15546764-15546783 | None:intergenic | 40.0% | |
| ! | CGTGTATATGATGATGCATG+TGG | + | chr5_1:15546835-15546854 | Msa0719900:intron | 40.0% |
| ACTATCACTGTCACTCAACA+TGG | - | chr5_1:15546882-15546901 | None:intergenic | 40.0% | |
| CACACAATACACACACGAAA+AGG | - | chr5_1:15547297-15547316 | None:intergenic | 40.0% | |
| TCGTGTGTGTATTGTGTGTT+TGG | + | chr5_1:15547299-15547318 | Msa0719900:intron | 40.0% | |
| TGTGTGTATTGTGTGTTTGG+TGG | + | chr5_1:15547302-15547321 | Msa0719900:intron | 40.0% | |
| TTCATCATAGCAACACGACA+TGG | - | chr5_1:15547386-15547405 | None:intergenic | 40.0% | |
| TTCATCATAGCAACACAGCA+TGG | - | chr5_1:15547581-15547600 | None:intergenic | 40.0% | |
| !! | GAAATTTGAATTGGTAGCGG+TGG | - | chr5_1:15548296-15548315 | None:intergenic | 40.0% |
| GGAAGACATGGGTAGAAATA+TGG | + | chr5_1:15548553-15548572 | Msa0719900:intron | 40.0% | |
| GCATTATGGAGTCGTTTGTT+AGG | + | chr5_1:15548587-15548606 | Msa0719900:intron | 40.0% | |
| !! | ACTGAGCATGATTTGCTATG+TGG | + | chr5_1:15548704-15548723 | Msa0719900:intron | 40.0% |
| TGTGACAATATTCTGTGGAG+AGG | + | chr5_1:15548976-15548995 | Msa0719900:intron | 40.0% | |
| GTGACAATATTCTGTGGAGA+GGG | + | chr5_1:15548977-15548996 | Msa0719900:intron | 40.0% | |
| !! | TTCATGTGTTTGGTGGATTC+AGG | + | chr5_1:15549338-15549357 | Msa0719900:intron | 40.0% |
| TCATCATAGCGAACACAACA+TGG | - | chr5_1:15549681-15549700 | None:intergenic | 40.0% | |
| !!! | TATATTTTTTGGGCTCGGGA+AGG | - | chr5_1:15549884-15549903 | None:intergenic | 40.0% |
| AACTGCTATACAGTGCACTT+TGG | + | chr5_1:15550089-15550108 | Msa0719900:intron | 40.0% | |
| !! | ACCACTTCTCTTGCTGTTTA+TGG | + | chr5_1:15550234-15550253 | Msa0719900:CDS | 40.0% |
| ACCATAAACAGCAAGAGAAG+TGG | - | chr5_1:15550238-15550257 | None:intergenic | 40.0% | |
| !! | ACTTCTCTTGCTGTTTATGG+TGG | + | chr5_1:15550237-15550256 | Msa0719900:CDS | 40.0% |
| !! | TGCTATTGATTCTATCCCAG+TGG | + | chr5_1:15550302-15550321 | Msa0719900:CDS | 40.0% |
| CCTACAACTTCGAACAGTTT+GGG | - | chr5_1:15550421-15550440 | None:intergenic | 40.0% | |
| CCAAACTGTTCGAAGTTGTA+GGG | + | chr5_1:15550419-15550438 | Msa0719900:CDS | 40.0% | |
| TCAAGGTATGTGCCTAATGT+TGG | + | chr5_1:15550482-15550501 | Msa0719900:intron | 40.0% | |
| TAAACTGCAGAGAAACAGAG+AGG | + | chr5_1:15550562-15550581 | Msa0719900:intron | 40.0% | |
| GAACTCAAGGAACAAGTTCT+TGG | + | chr5_1:15550605-15550624 | Msa0719900:CDS | 40.0% | |
| ! | AGGTGGTGAGTTGAAGTGAA+GGG | - | chr5_1:15545737-15545756 | None:intergenic | 45.0% |
| GTGAATTGTGAAGGAAGAGG+TGG | - | chr5_1:15545754-15545773 | None:intergenic | 45.0% | |
| GCCCCATTTGTGAATTGTGA+AGG | - | chr5_1:15545763-15545782 | None:intergenic | 45.0% | |
| GGAAGTTTGGAAAGAGTGAG+AGG | - | chr5_1:15545800-15545819 | None:intergenic | 45.0% | |
| AGCGAAGGAATTGGGAAGTT+TGG | - | chr5_1:15545813-15545832 | None:intergenic | 45.0% | |
| GGGTTTATGGTGAAAAGCGA+AGG | - | chr5_1:15545828-15545847 | None:intergenic | 45.0% | |
| TCGGAGGAAAAGAGGGTTTA+TGG | - | chr5_1:15545841-15545860 | None:intergenic | 45.0% | |
| GCATGTTTCGGAGGAAAAGA+GGG | - | chr5_1:15545848-15545867 | None:intergenic | 45.0% | |
| TGCATGTTTCGGAGGAAAAG+AGG | - | chr5_1:15545849-15545868 | None:intergenic | 45.0% | |
| ! | GATAAGAGTGCATGTTTCGG+AGG | - | chr5_1:15545857-15545876 | None:intergenic | 45.0% |
| CATCAGGCAACACTTCCTTT+GGG | - | chr5_1:15546730-15546749 | None:intergenic | 45.0% | |
| CTGAACCTTCTCTCTACAAG+CGG | - | chr5_1:15547221-15547240 | None:intergenic | 45.0% | |
| ACACACACGAAAAGGTAACG+AGG | - | chr5_1:15547289-15547308 | None:intergenic | 45.0% | |
| GCATTCATGTCGAATCTGAG+CGG | + | chr5_1:15548074-15548093 | Msa0719900:intron | 45.0% | |
| CATACAATCACCTACAGGGA+AGG | - | chr5_1:15548208-15548227 | None:intergenic | 45.0% | |
| GGAGACAATATTCTGTGGAG+AGG | - | chr5_1:15548275-15548294 | None:intergenic | 45.0% | |
| ! | TGGAGTCGTTTGTTAGGACA+AGG | + | chr5_1:15548593-15548612 | Msa0719900:intron | 45.0% |
| CTGAACCTTCTCTCCATGAA+TGG | - | chr5_1:15549050-15549069 | None:intergenic | 45.0% | |
| !! | GTTTGGTGGATTGATGAGCA+TGG | + | chr5_1:15549613-15549632 | Msa0719900:intron | 45.0% |
| AGACAGATAGCATGAGAAGC+AGG | - | chr5_1:15549916-15549935 | None:intergenic | 45.0% | |
| !! | TCTCTTGCTGTTTATGGTGG+TGG | + | chr5_1:15550240-15550259 | Msa0719900:CDS | 45.0% |
| CTTCGAACAGTTTGGGAATC+TGG | - | chr5_1:15550414-15550433 | None:intergenic | 45.0% | |
| CCCAAACTGTTCGAAGTTGT+AGG | + | chr5_1:15550418-15550437 | Msa0719900:CDS | 45.0% | |
| CCCTACAACTTCGAACAGTT+TGG | - | chr5_1:15550422-15550441 | None:intergenic | 45.0% | |
| GGAGCTGGCCAATAAAATAG+AGG | + | chr5_1:15550583-15550602 | Msa0719900:CDS | 45.0% | |
| !!! | AAAATAATTTTTATTTGATA+AGG | + | chr5_1:15546047-15546066 | Msa0719900:intron | 5.0% |
| !! | AAAATTTAATTAATAATCTT+AGG | - | chr5_1:15550541-15550560 | None:intergenic | 5.0% |
| ! | GAGGTGGTGAGTTGAAGTGA+AGG | - | chr5_1:15545738-15545757 | None:intergenic | 50.0% |
| GCATCCGAGGAGAATTCAAG+CGG | + | chr5_1:15546614-15546633 | Msa0719900:CDS | 50.0% | |
| AGCACCGCTTGAATTCTCCT+CGG | - | chr5_1:15546621-15546640 | None:intergenic | 50.0% | |
| TGTGGAGAATGAGGACCCAA+AGG | + | chr5_1:15546712-15546731 | Msa0719900:CDS | 50.0% | |
| CCATCAGGCAACACTTCCTT+TGG | - | chr5_1:15546731-15546750 | None:intergenic | 50.0% | |
| !! | CCAAAGGAAGTGTTGCCTGA+TGG | + | chr5_1:15546728-15546747 | Msa0719900:CDS | 50.0% |
| !! | GAAGTGTTGCCTGATGGAGA+AGG | + | chr5_1:15546734-15546753 | Msa0719900:CDS | 50.0% |
| TATCGAGCAAATCCAACGGC+AGG | - | chr5_1:15546760-15546779 | None:intergenic | 50.0% | |
| AGTTGCTCAGTTAACCGCTC+AGG | - | chr5_1:15547026-15547045 | None:intergenic | 50.0% | |
| TCTAGCCGCTTGTAGAGAGA+AGG | + | chr5_1:15547213-15547232 | Msa0719900:intron | 50.0% | |
| GCATTCATGTCGAACCTGAG+CGG | + | chr5_1:15547451-15547470 | Msa0719900:intron | 50.0% | |
| GCATTTGTGTCGAACCTGAG+CGG | + | chr5_1:15547646-15547665 | Msa0719900:intron | 50.0% | |
| GCATTCATGTCGAACCTGAG+CGG | + | chr5_1:15547451-15547470 | Msa0719900:intron | 50.0% | |
| TTTACGTGAGCCTTCCCTGT+AGG | + | chr5_1:15548195-15548214 | Msa0719900:intron | 50.0% | |
| GCGGTGGAGACAATATTCTG+TGG | - | chr5_1:15548280-15548299 | None:intergenic | 50.0% | |
| GCATTCATGTCGAACCTGAG+CGG | + | chr5_1:15547451-15547470 | Msa0719900:intron | 50.0% | |
| GCATTCATGTCGTACCTGAG+CGG | + | chr5_1:15549747-15549766 | Msa0719900:intron | 50.0% | |
| !! | TTATGGTGGTGGTGCCATAG+TGG | + | chr5_1:15550251-15550270 | Msa0719900:CDS | 50.0% |
| AGTTAACCACAGGGCCACTA+TGG | - | chr5_1:15550268-15550287 | None:intergenic | 50.0% | |
| AGTGGCCCTGTGGTTAACTT+CGG | + | chr5_1:15550269-15550288 | Msa0719900:CDS | 50.0% | |
| AACGGCCGAAGTTAACCACA+GGG | - | chr5_1:15550277-15550296 | None:intergenic | 50.0% | |
| TGGTTAACTTCGGCCGTTGT+TGG | + | chr5_1:15550279-15550298 | Msa0719900:CDS | 50.0% | |
| CTGTTCGAAGTTGTAGGGCT+TGG | + | chr5_1:15550424-15550443 | Msa0719900:CDS | 50.0% | |
| ACAGCTCCTTTCCTCTGCTT+GGG | + | chr5_1:15550753-15550772 | Msa0719900:three_prime_UTR | 50.0% | |
| TGTAAGGGCAACAGCATCCG+AGG | + | chr5_1:15546601-15546620 | Msa0719900:CDS | 55.0% | |
| GAGGAGAATTCAAGCGGTGC+TGG | + | chr5_1:15546620-15546639 | Msa0719900:CDS | 55.0% | |
| AGTTGCTCAGGTAACCGCTC+AGG | - | chr5_1:15547468-15547487 | None:intergenic | 55.0% | |
| AGTTGCTCAGCTAACCGCTC+AGG | - | chr5_1:15547663-15547682 | None:intergenic | 55.0% | |
| AGTTGCTCAGCTAACCGCTC+AGG | - | chr5_1:15547663-15547682 | None:intergenic | 55.0% | |
| AGTTGCTCAGGTAACCGCTC+AGG | - | chr5_1:15547468-15547487 | None:intergenic | 55.0% | |
| AGTTGCTCAGGTAACCGCTC+AGG | - | chr5_1:15547468-15547487 | None:intergenic | 55.0% | |
| CAACGGCCGAAGTTAACCAC+AGG | - | chr5_1:15550278-15550297 | None:intergenic | 55.0% | |
| GCAGAGAAACAGAGAGGAGC+TGG | + | chr5_1:15550568-15550587 | Msa0719900:intron | 55.0% | |
| AGGAAAGGAGCTGTGAGGGA+TGG | - | chr5_1:15550747-15550766 | None:intergenic | 55.0% | |
| GCAGAGGAAAGGAGCTGTGA+GGG | - | chr5_1:15550751-15550770 | None:intergenic | 55.0% | |
| AGCAGAGGAAAGGAGCTGTG+AGG | - | chr5_1:15550752-15550771 | None:intergenic | 55.0% | |
| CACAGCTCCTTTCCTCTGCT+TGG | + | chr5_1:15550752-15550771 | Msa0719900:three_prime_UTR | 55.0% | |
| TGAGAGCCCAAGCAGAGGAA+AGG | - | chr5_1:15550762-15550781 | None:intergenic | 55.0% | |
| AACGGCAGGCCTTCTCCATC+AGG | - | chr5_1:15546746-15546765 | None:intergenic | 60.0% | |
| TGATGGAGAAGGCCTGCCGT+TGG | + | chr5_1:15546745-15546764 | Msa0719900:CDS | 60.0% | |
| GCACTCGTGTCGAACCTGAG+CGG | + | chr5_1:15547009-15547028 | Msa0719900:intron | 60.0% | |
| GCAGTTGAGAGCCCAAGCAG+AGG | - | chr5_1:15550767-15550786 | None:intergenic | 60.0% | |
| !! | GTGGTGCCATAGTGGCCCTG+TGG | + | chr5_1:15550259-15550278 | Msa0719900:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 15545709 | 15550804 | 15545709 | ID=Msa0719900;Name=Msa0719900 |
| chr5_1 | mRNA | 15545709 | 15550804 | 15545709 | ID=Msa0719900-mRNA-1;Parent=Msa0719900;Name=Msa0719900-mRNA-1;_AED=0.06;_eAED=0.06;_QI=67|1|1|1|0.8|0.66|6|144|184 |
| chr5_1 | exon | 15545709 | 15545878 | 15545709 | ID=Msa0719900-mRNA-1:exon:5974;Parent=Msa0719900-mRNA-1 |
| chr5_1 | exon | 15546582 | 15546787 | 15546582 | ID=Msa0719900-mRNA-1:exon:5975;Parent=Msa0719900-mRNA-1 |
| chr5_1 | exon | 15550219 | 15550323 | 15550219 | ID=Msa0719900-mRNA-1:exon:5976;Parent=Msa0719900-mRNA-1 |
| chr5_1 | exon | 15550415 | 15550486 | 15550415 | ID=Msa0719900-mRNA-1:exon:5977;Parent=Msa0719900-mRNA-1 |
| chr5_1 | exon | 15550572 | 15550646 | 15550572 | ID=Msa0719900-mRNA-1:exon:5978;Parent=Msa0719900-mRNA-1 |
| chr5_1 | exon | 15550667 | 15550804 | 15550667 | ID=Msa0719900-mRNA-1:exon:5979;Parent=Msa0719900-mRNA-1 |
| chr5_1 | five_prime_UTR | 15545709 | 15545775 | 15545709 | ID=Msa0719900-mRNA-1:five_prime_utr;Parent=Msa0719900-mRNA-1 |
| chr5_1 | CDS | 15545776 | 15545878 | 15545776 | ID=Msa0719900-mRNA-1:cds;Parent=Msa0719900-mRNA-1 |
| chr5_1 | CDS | 15546582 | 15546787 | 15546582 | ID=Msa0719900-mRNA-1:cds;Parent=Msa0719900-mRNA-1 |
| chr5_1 | CDS | 15550219 | 15550323 | 15550219 | ID=Msa0719900-mRNA-1:cds;Parent=Msa0719900-mRNA-1 |
| chr5_1 | CDS | 15550415 | 15550486 | 15550415 | ID=Msa0719900-mRNA-1:cds;Parent=Msa0719900-mRNA-1 |
| chr5_1 | CDS | 15550572 | 15550640 | 15550572 | ID=Msa0719900-mRNA-1:cds;Parent=Msa0719900-mRNA-1 |
| chr5_1 | three_prime_UTR | 15550641 | 15550646 | 15550641 | ID=Msa0719900-mRNA-1:three_prime_utr;Parent=Msa0719900-mRNA-1 |
| chr5_1 | three_prime_UTR | 15550667 | 15550804 | 15550667 | ID=Msa0719900-mRNA-1:three_prime_utr;Parent=Msa0719900-mRNA-1 |
| Gene Sequence |
| Protein sequence |
