AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0154840


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154840 MtrunA17_Chr1g0169431 98.770 244 3 0 1 244 1 244 0.0 498
Msa0154840 MtrunA17_Chr5g0395391 71.489 235 52 3 1 235 12 231 9.78e-105 306
Msa0154840 MtrunA17_Chr5g0395391 76.147 109 26 0 136 244 234 342 1.01e-56 184
Msa0154840 MtrunA17_Chr8g0340401 47.340 188 84 7 63 241 114 295 3.01e-39 139
Msa0154840 MtrunA17_Chr8g0372291 72.000 75 21 0 170 244 216 290 4.03e-36 129
Msa0154840 MtrunA17_Chr2g0326771 46.584 161 54 4 99 236 129 280 1.67e-35 128
Msa0154840 MtrunA17_Chr1g0146231 43.810 210 71 7 63 241 110 303 4.66e-35 127
Msa0154840 MtrunA17_Chr3g0140331 44.554 202 69 8 63 241 141 322 6.76e-35 127
Msa0154840 MtrunA17_Chr3g0145121 36.260 262 122 9 6 241 42 284 8.94e-35 126
Msa0154840 MtrunA17_Chr4g0035891 50.000 140 44 5 124 239 141 278 2.17e-33 122
Msa0154840 MtrunA17_Chr5g0404981 71.233 73 21 0 172 244 300 372 2.53e-33 124
Msa0154840 MtrunA17_Chr6g0461591 76.471 68 16 0 171 238 191 258 5.42e-33 120
Msa0154840 MtrunA17_Chr7g0253101 74.648 71 18 0 166 236 182 252 6.59e-33 120
Msa0154840 MtrunA17_Chr1g0199671 70.130 77 21 1 160 236 232 306 2.18e-32 120
Msa0154840 MtrunA17_Chr4g0028961 74.627 67 17 0 172 238 232 298 3.01e-32 120
Msa0154840 MtrunA17_Chr1g0213161 71.642 67 19 0 170 236 150 216 1.36e-31 116
Msa0154840 MtrunA17_Chr7g0232671 55.224 67 28 1 172 238 187 251 3.82e-19 83.6
Msa0154840 MtrunA17_Chr7g0232701 47.126 87 44 2 149 233 48 134 4.18e-18 78.2
Msa0154840 MtrunA17_Chr7g0232681 46.739 92 45 3 149 238 107 196 1.90e-17 77.8
Msa0154840 MtrunA17_Chr7g0271861 54.762 42 19 0 166 207 16 57 9.49e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0154840 AT3G24050.1 80.000 75 15 0 170 244 192 266 2.47e-40 140
Msa0154840 AT4G32890.1 39.636 275 98 11 7 241 20 266 6.46e-38 135
Msa0154840 AT4G36240.1 38.340 253 104 6 6 239 12 231 6.98e-36 127
Msa0154840 AT4G34680.1 46.479 142 63 3 111 242 112 250 4.91e-35 126
Msa0154840 AT4G34680.2 46.479 142 63 3 111 242 112 250 4.91e-35 126
Msa0154840 AT5G66320.2 79.412 68 14 0 172 239 249 316 8.80e-35 127
Msa0154840 AT5G66320.1 79.412 68 14 0 172 239 249 316 8.80e-35 127
Msa0154840 AT5G25830.1 77.143 70 16 0 172 241 219 288 1.23e-33 124
Msa0154840 AT3G51080.1 72.603 73 20 0 172 244 221 293 2.74e-33 122
Msa0154840 AT3G60530.1 75.362 69 17 0 171 239 157 225 2.88e-33 120
Msa0154840 AT1G08010.2 72.464 69 19 0 170 238 218 286 2.82e-32 120
Msa0154840 AT1G08010.1 72.464 69 19 0 170 238 218 286 2.82e-32 120
Msa0154840 AT1G08010.3 72.464 69 19 0 170 238 218 286 2.82e-32 120
Msa0154840 AT2G45050.1 75.000 68 17 0 172 239 179 246 3.84e-32 118
Msa0154840 AT1G08000.2 64.634 82 29 0 157 238 203 284 7.00e-32 119
Msa0154840 AT1G08000.1 64.634 82 29 0 157 238 203 284 7.00e-32 119
Msa0154840 AT3G54810.1 75.000 68 17 0 172 239 229 296 6.57e-31 117
Msa0154840 AT3G54810.2 75.000 68 17 0 172 239 229 296 6.57e-31 117
Msa0154840 AT3G45170.1 60.294 68 27 0 172 239 115 182 2.38e-27 104
Msa0154840 AT2G28340.1 66.667 63 21 0 174 236 193 255 9.81e-26 102

Find 104 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGACAAGCAAAATGATTTA+AGG 0.141755 1_4:-19602543 None:intergenic
CACTTTCTCTTTGGAAGTTT+TGG 0.158917 1_4:-19602090 None:intergenic
TCAGTCTCTCAATTCTCTTT+TGG 0.180061 1_4:+19599815 Msa0154840:five_prime_UTR
CATGCCAAAAGTTAGGATTT+TGG 0.206218 1_4:+19602408 Msa0154840:three_prime_UTR
TGCTTATCTGAACTAATTCT+AGG 0.234887 1_4:+19602682 Msa0154840:three_prime_UTR
TTGTACTTTGATTGAGGATT+AGG 0.239267 1_4:+19602619 Msa0154840:three_prime_UTR
CTTGTGCTGTTCTCGAGCTT+TGG 0.240759 1_4:-19601909 None:intergenic
TTGTGCTGTTCTCGAGCTTT+GGG 0.269770 1_4:-19601908 None:intergenic
GGTTTGTTTCACTTTCTCTT+TGG 0.274207 1_4:-19602099 None:intergenic
AGTGAAGGAAAGGCTTTCTT+AGG 0.280723 1_4:-19601209 None:intergenic
GTCCAACAAAGATGCATTTC+CGG 0.285678 1_4:+19601821 Msa0154840:CDS
GACATTTCCTCCCAATGGTT+GGG 0.293078 1_4:-19602121 None:intergenic
CTATTTGCAGGACGGTATTC+AGG 0.302785 1_4:-19602248 None:intergenic
CGAAAAGTTGGGCTATTTGC+AGG 0.311001 1_4:-19602260 None:intergenic
CATGCATTACAAAGTGTCTT+TGG 0.315428 1_4:-19602194 None:intergenic
CATTTAGCATGCCAAAAGTT+AGG 0.327033 1_4:+19602401 Msa0154840:three_prime_UTR
AAAACCAAAATCCTAACTTT+TGG 0.331501 1_4:-19602412 None:intergenic
CAAAGTGTCTTTGGACCATT+TGG 0.337970 1_4:-19602185 None:intergenic
TGTACTTTGATTGAGGATTA+GGG 0.353459 1_4:+19602620 Msa0154840:three_prime_UTR
GAAGGTGGATCACTGCATTC+TGG 0.356189 1_4:-19601236 None:intergenic
GTTGTTTCCACGGGAATTGT+AGG 0.366200 1_4:-19602061 None:intergenic
CTCTCTTGCCTGCTACTAGC+TGG 0.381715 1_4:+19599874 Msa0154840:five_prime_UTR
TGGTTCTGTGGACGACCTCT+TGG 0.388206 1_4:+19601145 Msa0154840:CDS
GATGAGGAAGCAGAAGGGAA+TGG 0.399465 1_4:+19602322 Msa0154840:CDS
TTTGTAATGCATGTGGGGTT+AGG 0.415099 1_4:+19602204 Msa0154840:CDS
ACTTACAGAAAGTGAATTGA+TGG 0.418526 1_4:-19601285 None:intergenic
CCACGGGAATTGTAGGTTTG+AGG 0.425374 1_4:-19602054 None:intergenic
AAGCAGAAGGGAATGGGAAC+GGG 0.428545 1_4:+19602329 Msa0154840:CDS
TGTGATTGTAGCCACTTAAG+AGG 0.429240 1_4:-19601968 None:intergenic
AGCCGGAAATGCATCTTTGT+TGG 0.438765 1_4:-19601823 None:intergenic
TGCATGTCACTGCGAAAAGT+TGG 0.440834 1_4:-19602272 None:intergenic
ACATTTCCTCCCAATGGTTG+GGG 0.449081 1_4:-19602120 None:intergenic
ATTTGATGCTTCAAAAGATC+CGG 0.450692 1_4:-19601879 None:intergenic
TGAGTTGTCCTGTATTCAAC+CGG 0.452850 1_4:+19601860 Msa0154840:CDS
CAAAAGATCCGGTTGAATAC+AGG 0.453486 1_4:-19601868 None:intergenic
GACTTGCTCCGTGCACGGAC+AGG 0.458205 1_4:-19601999 None:intergenic
GTTAACTTGTACTTTGATTG+AGG 0.459680 1_4:+19602613 Msa0154840:three_prime_UTR
TTCGCTCAATCCATTGGCCC+TGG 0.469600 1_4:+19601256 Msa0154840:CDS
GACAAGAGCCAGCTAGTAGC+AGG 0.476760 1_4:-19599882 None:intergenic
CCAGGAGGAGGTTGCAGAAG+AGG 0.477241 1_4:+19601785 Msa0154840:intron
GTGGAGATGAGGAAGCAGAA+GGG 0.478182 1_4:+19602317 Msa0154840:CDS
TTGCAGAAGAGGAGCTTGAA+TGG 0.482772 1_4:+19601796 Msa0154840:CDS
GTCATTGATAAAATGAAAAG+TGG 0.484461 1_4:+19602358 Msa0154840:three_prime_UTR
ATGAGGAAGCAGAAGGGAAT+GGG 0.486460 1_4:+19602323 Msa0154840:CDS
GTGAAACAAACCCCAACCAT+TGG 0.493226 1_4:+19602110 Msa0154840:CDS
TTGGTACTCGGTTGTTTCCA+CGG 0.494137 1_4:-19602071 None:intergenic
AACAGCATTACCCTCTTAAG+TGG 0.500575 1_4:+19601957 Msa0154840:CDS
GCATGTCACTGCGAAAAGTT+GGG 0.502991 1_4:-19602271 None:intergenic
TGGTACTCGGTTGTTTCCAC+GGG 0.505676 1_4:-19602070 None:intergenic
CAATGGCGTGCAGGTCCAAA+TGG 0.508669 1_4:+19602170 Msa0154840:CDS
TTGGATTTCTCATCTGACAT+AGG 0.508816 1_4:+19601164 Msa0154840:CDS
AGTGGAGATGAGGAAGCAGA+AGG 0.514467 1_4:+19602316 Msa0154840:CDS
TTCTGGTTTGAGTGAAGGAA+AGG 0.515866 1_4:-19601219 None:intergenic
TGACATTTCCTCCCAATGGT+TGG 0.516568 1_4:-19602122 None:intergenic
TGTGGGGTTAGGTATAAGTC+TGG 0.520333 1_4:+19602215 Msa0154840:CDS
TCCACCTTCGCTCAATCCAT+TGG 0.521499 1_4:+19601250 Msa0154840:CDS
GATGGAGGCCCTTGGTTCTG+TGG 0.522422 1_4:+19601133 Msa0154840:exon
TGAAACAAACCCCAACCATT+GGG 0.524385 1_4:+19602111 Msa0154840:CDS
GTTCAGATAAGCATAATGAA+TGG 0.527844 1_4:-19602672 None:intergenic
AATTCTAGGTTGATGAATAG+TGG 0.527863 1_4:+19602696 Msa0154840:three_prime_UTR
GTGAATTGATGGGATCATCC+AGG 0.528433 1_4:-19601274 None:intergenic
ATGGGATCATCCAGGGCCAA+TGG 0.530010 1_4:-19601266 None:intergenic
CTGCATTCTGGTTTGAGTGA+AGG 0.532294 1_4:-19601224 None:intergenic
TCATCTCCACTACTTTCCTG+TGG 0.533667 1_4:-19602304 None:intergenic
TCTCGTAGCAAGCCTCGCCT+TGG 0.534627 1_4:+19602020 Msa0154840:CDS
AGTACACAAACGTGAAAAGC+TGG 0.538176 1_4:+19599913 Msa0154840:five_prime_UTR
GATACTCCACAATGGCGTGC+AGG 0.539263 1_4:+19602161 Msa0154840:CDS
TCAACAAACGTTTCAACAGC+CGG 0.539345 1_4:-19601840 None:intergenic
TTGAGGCATCAGCAAGGCCA+AGG 0.541565 1_4:-19602037 None:intergenic
GAAGCAGAAGGGAATGGGAA+CGG 0.544276 1_4:+19602328 Msa0154840:CDS
GCCAATGGATTGAGCGAAGG+TGG 0.546210 1_4:-19601251 None:intergenic
ACTTAAGAGGGTAATGCTGT+TGG 0.550014 1_4:-19601955 None:intergenic
CATCTCCACTACTTTCCTGT+GGG 0.557649 1_4:-19602303 None:intergenic
CTGAAAGAACCAACGAGAGA+TGG 0.561073 1_4:-19599796 None:intergenic
AGAACCAACGAGAGATGGTA+AGG 0.566590 1_4:-19599791 None:intergenic
TGAAGTTCCCTGTCCGTGCA+CGG 0.571256 1_4:+19601991 Msa0154840:CDS
TTTGGACCTGCACGCCATTG+TGG 0.572595 1_4:-19602167 None:intergenic
ACTTGCTCCGTGCACGGACA+GGG 0.574860 1_4:-19601998 None:intergenic
TACGAGACTTGCTCCGTGCA+CGG 0.578328 1_4:-19602004 None:intergenic
CGTGCCTTACCATCTCTCGT+TGG 0.580045 1_4:+19599787 None:intergenic
ATGATGACATTTCCTCCCAA+TGG 0.580868 1_4:-19602126 None:intergenic
ACAGGAAAGTAGTGGAGATG+AGG 0.582547 1_4:+19602306 Msa0154840:CDS
TGTGCTGTTCTCGAGCTTTG+GGG 0.589584 1_4:-19601907 None:intergenic
TGAATTGATGGGATCATCCA+GGG 0.600445 1_4:-19601273 None:intergenic
GCATCAGCAAGGCCAAGGCG+AGG 0.601336 1_4:-19602032 None:intergenic
GACACTTTGTAATGCATGTG+GGG 0.601729 1_4:+19602199 Msa0154840:CDS
AAGACACTTTGTAATGCATG+TGG 0.602236 1_4:+19602197 Msa0154840:CDS
TAATTCCCACAGGAAAGTAG+TGG 0.604924 1_4:+19602298 Msa0154840:CDS
GAGGTCGTCCACAGAACCAA+GGG 0.608143 1_4:-19601141 None:intergenic
AGACACTTTGTAATGCATGT+GGG 0.608576 1_4:+19602198 Msa0154840:CDS
CTTACAGAAAGTGAATTGAT+GGG 0.611737 1_4:-19601284 None:intergenic
GTGATTGTAGCCACTTAAGA+GGG 0.622729 1_4:-19601967 None:intergenic
ACATGCATTCTAATTCCCAC+AGG 0.630282 1_4:+19602288 Msa0154840:CDS
AACAAACCCCAACCATTGGG+AGG 0.635541 1_4:+19602114 Msa0154840:CDS
AGGGCCAATGGATTGAGCGA+AGG 0.639769 1_4:-19601254 None:intergenic
AGAGGTCGTCCACAGAACCA+AGG 0.642044 1_4:-19601142 None:intergenic
GGGAGGAAATGTCATCATTG+TGG 0.646984 1_4:+19602131 Msa0154840:CDS
CCTCAAACCTACAATTCCCG+TGG 0.649034 1_4:+19602054 Msa0154840:CDS
GACGGTATTCAGGTACAAGT+CGG 0.649278 1_4:-19602238 None:intergenic
AAGTTGGGCTATTTGCAGGA+CGG 0.658089 1_4:-19602256 None:intergenic
TTTCTCATCTGACATAGGTG+AGG 0.665571 1_4:+19601169 Msa0154840:CDS
GTAGGTTTGAGGCATCAGCA+AGG 0.716777 1_4:-19602043 None:intergenic
TGTCAGATGAGAAATCCAAG+AGG 0.747403 1_4:-19601160 None:intergenic
GAGTTGATGATACTCCACAA+TGG 0.801331 1_4:+19602153 Msa0154840:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTAATATTTGTTTGTA+CGG + chr1_4:19601067-19601086 Msa0154840:intron 10.0%
!!! TTTTATTATTATTTGTGAAG+TGG + chr1_4:19600087-19600106 Msa0154840:intron 15.0%
!! TTTATTATTATTTGTGAAGT+GGG + chr1_4:19600088-19600107 Msa0154840:intron 15.0%
!!! TTTGTTTAAGGTTTAATTTA+AGG + chr1_4:19600191-19600210 Msa0154840:intron 15.0%
!!! TTTTCTAATCATTTTCATAT+TGG + chr1_4:19600277-19600296 Msa0154840:intron 15.0%
!! AAAAAACATAGCAAAGATTA+AGG - chr1_4:19599967-19599986 None:intergenic 20.0%
!! ATTTGAATATGCTGAAAATT+TGG + chr1_4:19600063-19600082 Msa0154840:intron 20.0%
!! AACAAAGAAAAACAAGAAAA+TGG - chr1_4:19600177-19600196 None:intergenic 20.0%
!!! TTCTTGTTTTTCTTTGTTTA+AGG + chr1_4:19600179-19600198 Msa0154840:intron 20.0%
!!! TCCTTATTTTTATGTTATGT+TGG + chr1_4:19600222-19600241 Msa0154840:intron 20.0%
!! ACCAACATAACATAAAAATA+AGG - chr1_4:19600226-19600245 None:intergenic 20.0%
!! AAAGATTAAAGAACTTCATT+TGG - chr1_4:19600424-19600443 None:intergenic 20.0%
!!! GTTGTTTTTATAAGCTATAT+TGG + chr1_4:19600581-19600600 Msa0154840:intron 20.0%
!! AAAAGTAACTCAAGTAATAA+AGG - chr1_4:19600793-19600812 None:intergenic 20.0%
!!! CTTTTTATTGTGTTTATGAA+TGG + chr1_4:19600837-19600856 Msa0154840:intron 20.0%
!! TTTCATGTATTGTAATCAAA+AGG + chr1_4:19600952-19600971 Msa0154840:intron 20.0%
!! TTAAAAAATAGTGAAAAGCA+TGG - chr1_4:19601055-19601074 None:intergenic 20.0%
!! ACAGATAAAAATAACAGTAT+AGG - chr1_4:19601098-19601117 None:intergenic 20.0%
!!! AAGTATTTTGAAAAGGTTAA+TGG - chr1_4:19601319-19601338 None:intergenic 20.0%
!!! TAGATTAAAATTTTGCAGTT+AGG + chr1_4:19602516-19602535 Msa0154840:three_prime_UTR 20.0%
!!! AGATTAAAATTTTGCAGTTA+GGG + chr1_4:19602517-19602536 Msa0154840:three_prime_UTR 20.0%
! AAAAACAAGCAAGAAAAAGA+GGG - chr1_4:19600010-19600029 None:intergenic 25.0%
! TAAAAACAAGCAAGAAAAAG+AGG - chr1_4:19600011-19600030 None:intergenic 25.0%
! TATTGAAGGAATAGTGAAAT+GGG + chr1_4:19600119-19600138 Msa0154840:intron 25.0%
! AAAGAACAGAAACAATGAAT+TGG - chr1_4:19600393-19600412 None:intergenic 25.0%
! TGTAAAATCGTATACTTTAC+TGG + chr1_4:19600727-19600746 Msa0154840:intron 25.0%
!!! ATACTTTACTGGTTTTTGTA+TGG + chr1_4:19600738-19600757 Msa0154840:intron 25.0%
! TAATGTAAAGAACTTATTCC+AGG - chr1_4:19600875-19600894 None:intergenic 25.0%
! TGAAAATTTCATAGTAGGTT+TGG - chr1_4:19600984-19601003 None:intergenic 25.0%
!! AAACCTACTATGAAATTTTC+AGG + chr1_4:19600983-19601002 Msa0154840:intron 25.0%
! AATCCTGAAAATTTCATAGT+AGG - chr1_4:19600989-19601008 None:intergenic 25.0%
!!! TGTATATTTGTTTTCAGAGA+TGG + chr1_4:19601115-19601134 Msa0154840:intron 25.0%
!!! ATCAAGCAAGTATTTTGAAA+AGG - chr1_4:19601326-19601345 None:intergenic 25.0%
! AAGGAAAACAAGTAAAAATC+TGG - chr1_4:19601484-19601503 None:intergenic 25.0%
! AACTCATAAGTATGGAAAAA+AGG - chr1_4:19601731-19601750 None:intergenic 25.0%
! GTCATTGATAAAATGAAAAG+TGG + chr1_4:19602358-19602377 Msa0154840:three_prime_UTR 25.0%
!! AAAACCAAAATCCTAACTTT+TGG - chr1_4:19602415-19602434 None:intergenic 25.0%
! TTGACAAGCAAAATGATTTA+AGG - chr1_4:19602546-19602565 None:intergenic 25.0%
CAGAGGAAAATTAAACATAG+TGG - chr1_4:19600039-19600058 None:intergenic 30.0%
AGCATATTCAAATAACACAG+AGG - chr1_4:19600056-19600075 None:intergenic 30.0%
GTATTGAAGGAATAGTGAAA+TGG + chr1_4:19600118-19600137 Msa0154840:intron 30.0%
! TACGATTTTACACATCGTAT+TGG - chr1_4:19600719-19600738 None:intergenic 30.0%
!!! GAATGGTGTTTTATTTTACC+TGG + chr1_4:19600854-19600873 Msa0154840:intron 30.0%
!! ATATTTGTTTTCAGAGATGG+AGG + chr1_4:19601118-19601137 Msa0154840:intron 30.0%
CTTACAGAAAGTGAATTGAT+GGG - chr1_4:19601287-19601306 None:intergenic 30.0%
ACTTACAGAAAGTGAATTGA+TGG - chr1_4:19601288-19601307 None:intergenic 30.0%
TTCACTTTCTGTAAGTTTGA+CGG + chr1_4:19601292-19601311 Msa0154840:intron 30.0%
!!! TATCTAGTTTTGACTTGTTG+AGG + chr1_4:19601350-19601369 Msa0154840:intron 30.0%
CTAATATTCTACTTTGGACA+AGG - chr1_4:19601452-19601471 None:intergenic 30.0%
CACTAGCTAATATTCTACTT+TGG - chr1_4:19601458-19601477 None:intergenic 30.0%
TCCTTTAAGCATCAATGTAT+TGG + chr1_4:19601499-19601518 Msa0154840:intron 30.0%
CATGAAAACTTTGATGCAAA+CGG - chr1_4:19601575-19601594 None:intergenic 30.0%
CTTCACATAACTCATAAGTA+TGG - chr1_4:19601739-19601758 None:intergenic 30.0%
ATTTGATGCTTCAAAAGATC+CGG - chr1_4:19601882-19601901 None:intergenic 30.0%
!! ATTTTAGTCCATTTTTGCTG+TGG + chr1_4:19602466-19602485 Msa0154840:three_prime_UTR 30.0%
!! TTTTAGTCCATTTTTGCTGT+GGG + chr1_4:19602467-19602486 Msa0154840:three_prime_UTR 30.0%
! TTAAAATTTTGCAGTTAGGG+AGG + chr1_4:19602520-19602539 Msa0154840:three_prime_UTR 30.0%
!! GTTAACTTGTACTTTGATTG+AGG + chr1_4:19602613-19602632 Msa0154840:three_prime_UTR 30.0%
TTGTACTTTGATTGAGGATT+AGG + chr1_4:19602619-19602638 Msa0154840:three_prime_UTR 30.0%
TGTACTTTGATTGAGGATTA+GGG + chr1_4:19602620-19602639 Msa0154840:three_prime_UTR 30.0%
GTTCAGATAAGCATAATGAA+TGG - chr1_4:19602675-19602694 None:intergenic 30.0%
TGCTTATCTGAACTAATTCT+AGG + chr1_4:19602682-19602701 Msa0154840:three_prime_UTR 30.0%
!! AATTCTAGGTTGATGAATAG+TGG + chr1_4:19602696-19602715 Msa0154840:three_prime_UTR 30.0%
! GTGGTGTAGTAAAATTTTTG+AGG + chr1_4:19602715-19602734 Msa0154840:three_prime_UTR 30.0%
! TCAGTCTCTCAATTCTCTTT+TGG + chr1_4:19599815-19599834 Msa0154840:five_prime_UTR 35.0%
! CAGTCTCTCAATTCTCTTTT+GGG + chr1_4:19599816-19599835 Msa0154840:five_prime_UTR 35.0%
! AGTCTCTCAATTCTCTTTTG+GGG + chr1_4:19599817-19599836 Msa0154840:five_prime_UTR 35.0%
AATGGTGAAGAGAGTCAAAA+TGG - chr1_4:19600159-19600178 None:intergenic 35.0%
TGTCTTAGTGAGTGAAAATG+TGG + chr1_4:19600314-19600333 Msa0154840:intron 35.0%
AATAAGCCGTTTATCCAAAC+AGG - chr1_4:19600463-19600482 None:intergenic 35.0%
! GTAAGTTTTGCGAGACTATT+AGG - chr1_4:19600673-19600692 None:intergenic 35.0%
TTGGATTTCTCATCTGACAT+AGG + chr1_4:19601164-19601183 Msa0154840:CDS 35.0%
GCCAATACATTGATGCTTAA+AGG - chr1_4:19601503-19601522 None:intergenic 35.0%
! AGCATCAATGTATTGGCATT+TGG + chr1_4:19601506-19601525 Msa0154840:intron 35.0%
TCCTGGAACATGAAAATAAG+CGG - chr1_4:19601771-19601790 None:intergenic 35.0%
!! TCTTTGGAAGTTTTGGTACT+CGG - chr1_4:19602086-19602105 None:intergenic 35.0%
!! CACTTTCTCTTTGGAAGTTT+TGG - chr1_4:19602093-19602112 None:intergenic 35.0%
! GGTTTGTTTCACTTTCTCTT+TGG - chr1_4:19602102-19602121 None:intergenic 35.0%
! CATGCATTACAAAGTGTCTT+TGG - chr1_4:19602197-19602216 None:intergenic 35.0%
AAGACACTTTGTAATGCATG+TGG + chr1_4:19602197-19602216 Msa0154840:CDS 35.0%
AGACACTTTGTAATGCATGT+GGG + chr1_4:19602198-19602217 Msa0154840:CDS 35.0%
CATTTAGCATGCCAAAAGTT+AGG + chr1_4:19602401-19602420 Msa0154840:three_prime_UTR 35.0%
! CATGCCAAAAGTTAGGATTT+TGG + chr1_4:19602408-19602427 Msa0154840:three_prime_UTR 35.0%
AAAACATCCCACAGCAAAAA+TGG - chr1_4:19602477-19602496 None:intergenic 35.0%
AGTACACAAACGTGAAAAGC+TGG + chr1_4:19599913-19599932 Msa0154840:five_prime_UTR 40.0%
CAAGCAAGAAAAAGAGGGAA+AGG - chr1_4:19600005-19600024 None:intergenic 40.0%
! AGTGGGTGTGATAGTATTGA+AGG + chr1_4:19600105-19600124 Msa0154840:intron 40.0%
GAAGGAATAGTGAAATGGGT+TGG + chr1_4:19600123-19600142 Msa0154840:intron 40.0%
!! TAATCTTTTCTGACTAGCCG+CGG + chr1_4:19600436-19600455 Msa0154840:intron 40.0%
TGTCAGATGAGAAATCCAAG+AGG - chr1_4:19601163-19601182 None:intergenic 40.0%
TTTCTCATCTGACATAGGTG+AGG + chr1_4:19601169-19601188 Msa0154840:CDS 40.0%
AGTGAAGGAAAGGCTTTCTT+AGG - chr1_4:19601212-19601231 None:intergenic 40.0%
!! TTCTGGTTTGAGTGAAGGAA+AGG - chr1_4:19601222-19601241 None:intergenic 40.0%
TGAATTGATGGGATCATCCA+GGG - chr1_4:19601276-19601295 None:intergenic 40.0%
CACTTGTGATCACTGTTTCA+TGG + chr1_4:19601595-19601614 Msa0154840:intron 40.0%
!! GCTTATTTTCATGTTCCAGG+AGG + chr1_4:19601770-19601789 Msa0154840:intron 40.0%
! TATTTTCATGTTCCAGGAGG+AGG + chr1_4:19601773-19601792 Msa0154840:intron 40.0%
GTCCAACAAAGATGCATTTC+CGG + chr1_4:19601821-19601840 Msa0154840:CDS 40.0%
TCAACAAACGTTTCAACAGC+CGG - chr1_4:19601843-19601862 None:intergenic 40.0%
TGAGTTGTCCTGTATTCAAC+CGG + chr1_4:19601860-19601879 Msa0154840:CDS 40.0%
CAAAAGATCCGGTTGAATAC+AGG - chr1_4:19601871-19601890 None:intergenic 40.0%
ACTTAAGAGGGTAATGCTGT+TGG - chr1_4:19601958-19601977 None:intergenic 40.0%
AACAGCATTACCCTCTTAAG+TGG + chr1_4:19601957-19601976 Msa0154840:CDS 40.0%
GTGATTGTAGCCACTTAAGA+GGG - chr1_4:19601970-19601989 None:intergenic 40.0%
TGTGATTGTAGCCACTTAAG+AGG - chr1_4:19601971-19601990 None:intergenic 40.0%
TGAAACAAACCCCAACCATT+GGG + chr1_4:19602111-19602130 Msa0154840:CDS 40.0%
ATGATGACATTTCCTCCCAA+TGG - chr1_4:19602129-19602148 None:intergenic 40.0%
!! GAGTTGATGATACTCCACAA+TGG + chr1_4:19602153-19602172 Msa0154840:CDS 40.0%
! CAAAGTGTCTTTGGACCATT+TGG - chr1_4:19602188-19602207 None:intergenic 40.0%
GACACTTTGTAATGCATGTG+GGG + chr1_4:19602199-19602218 Msa0154840:CDS 40.0%
TTTGTAATGCATGTGGGGTT+AGG + chr1_4:19602204-19602223 Msa0154840:CDS 40.0%
ACATGCATTCTAATTCCCAC+AGG + chr1_4:19602288-19602307 Msa0154840:CDS 40.0%
TAATTCCCACAGGAAAGTAG+TGG + chr1_4:19602298-19602317 Msa0154840:CDS 40.0%
!! TTGCTGTGGGATGTTTTAGA+TGG + chr1_4:19602480-19602499 Msa0154840:three_prime_UTR 40.0%
!! TGCTGTGGGATGTTTTAGAT+GGG + chr1_4:19602481-19602500 Msa0154840:three_prime_UTR 40.0%
CTGAAAGAACCAACGAGAGA+TGG - chr1_4:19599799-19599818 None:intergenic 45.0%
!! GGAATAGTGAAATGGGTTGG+TGG + chr1_4:19600126-19600145 Msa0154840:intron 45.0%
!! AATCTTTTCTGACTAGCCGC+GGG + chr1_4:19600437-19600456 Msa0154840:intron 45.0%
!! CTGCATTCTGGTTTGAGTGA+AGG - chr1_4:19601227-19601246 None:intergenic 45.0%
GTGAATTGATGGGATCATCC+AGG - chr1_4:19601277-19601296 None:intergenic 45.0%
TCCGAGATTGTTAATGCCTG+CGG + chr1_4:19601532-19601551 Msa0154840:intron 45.0%
ACCGCAGGCATTAACAATCT+CGG - chr1_4:19601536-19601555 None:intergenic 45.0%
GTTTCATGGTTTCCATGTCG+TGG + chr1_4:19601609-19601628 Msa0154840:intron 45.0%
TGAATGCCTGAGTTTACTCG+AGG + chr1_4:19601701-19601720 Msa0154840:intron 45.0%
GGAATTCCTCGAGTAAACTC+AGG - chr1_4:19601710-19601729 None:intergenic 45.0%
!! GCCGCTTATTTTCATGTTCC+AGG + chr1_4:19601767-19601786 Msa0154840:intron 45.0%
TTGCAGAAGAGGAGCTTGAA+TGG + chr1_4:19601796-19601815 Msa0154840:CDS 45.0%
AGCCGGAAATGCATCTTTGT+TGG - chr1_4:19601826-19601845 None:intergenic 45.0%
! TTGTGCTGTTCTCGAGCTTT+GGG - chr1_4:19601911-19601930 None:intergenic 45.0%
! GTTGTTTCCACGGGAATTGT+AGG - chr1_4:19602064-19602083 None:intergenic 45.0%
! TTGGTACTCGGTTGTTTCCA+CGG - chr1_4:19602074-19602093 None:intergenic 45.0%
GTGAAACAAACCCCAACCAT+TGG + chr1_4:19602110-19602129 Msa0154840:CDS 45.0%
ACATTTCCTCCCAATGGTTG+GGG - chr1_4:19602123-19602142 None:intergenic 45.0%
GACATTTCCTCCCAATGGTT+GGG - chr1_4:19602124-19602143 None:intergenic 45.0%
TGACATTTCCTCCCAATGGT+TGG - chr1_4:19602125-19602144 None:intergenic 45.0%
GGGAGGAAATGTCATCATTG+TGG + chr1_4:19602131-19602150 Msa0154840:CDS 45.0%
TGTGGGGTTAGGTATAAGTC+TGG + chr1_4:19602215-19602234 Msa0154840:CDS 45.0%
GACGGTATTCAGGTACAAGT+CGG - chr1_4:19602241-19602260 None:intergenic 45.0%
CTATTTGCAGGACGGTATTC+AGG - chr1_4:19602251-19602270 None:intergenic 45.0%
AAGTTGGGCTATTTGCAGGA+CGG - chr1_4:19602259-19602278 None:intergenic 45.0%
CGAAAAGTTGGGCTATTTGC+AGG - chr1_4:19602263-19602282 None:intergenic 45.0%
GCATGTCACTGCGAAAAGTT+GGG - chr1_4:19602274-19602293 None:intergenic 45.0%
TGCATGTCACTGCGAAAAGT+TGG - chr1_4:19602275-19602294 None:intergenic 45.0%
CATCTCCACTACTTTCCTGT+GGG - chr1_4:19602306-19602325 None:intergenic 45.0%
TCATCTCCACTACTTTCCTG+TGG - chr1_4:19602307-19602326 None:intergenic 45.0%
! ACAGGAAAGTAGTGGAGATG+AGG + chr1_4:19602306-19602325 Msa0154840:CDS 45.0%
ATGAGGAAGCAGAAGGGAAT+GGG + chr1_4:19602323-19602342 Msa0154840:CDS 45.0%
! TTTTCAGAGATGGAGGCCCT+TGG + chr1_4:19601125-19601144 Msa0154840:intron 50.0%
GAAGGTGGATCACTGCATTC+TGG - chr1_4:19601239-19601258 None:intergenic 50.0%
TCCACCTTCGCTCAATCCAT+TGG + chr1_4:19601250-19601269 Msa0154840:CDS 50.0%
! GAATTTGTCGTTTGCACCGC+AGG - chr1_4:19601551-19601570 None:intergenic 50.0%
! TGTGCTGTTCTCGAGCTTTG+GGG - chr1_4:19601910-19601929 None:intergenic 50.0%
! CTTGTGCTGTTCTCGAGCTT+TGG - chr1_4:19601912-19601931 None:intergenic 50.0%
! GTAGGTTTGAGGCATCAGCA+AGG - chr1_4:19602046-19602065 None:intergenic 50.0%
CCACGGGAATTGTAGGTTTG+AGG - chr1_4:19602057-19602076 None:intergenic 50.0%
CCTCAAACCTACAATTCCCG+TGG + chr1_4:19602054-19602073 Msa0154840:CDS 50.0%
! TGGTACTCGGTTGTTTCCAC+GGG - chr1_4:19602073-19602092 None:intergenic 50.0%
AACAAACCCCAACCATTGGG+AGG + chr1_4:19602114-19602133 Msa0154840:CDS 50.0%
AGTGGAGATGAGGAAGCAGA+AGG + chr1_4:19602316-19602335 Msa0154840:CDS 50.0%
GTGGAGATGAGGAAGCAGAA+GGG + chr1_4:19602317-19602336 Msa0154840:CDS 50.0%
GATGAGGAAGCAGAAGGGAA+TGG + chr1_4:19602322-19602341 Msa0154840:CDS 50.0%
GAAGCAGAAGGGAATGGGAA+CGG + chr1_4:19602328-19602347 Msa0154840:CDS 50.0%
AAGCAGAAGGGAATGGGAAC+GGG + chr1_4:19602329-19602348 Msa0154840:CDS 50.0%
CTCTCTTGCCTGCTACTAGC+TGG + chr1_4:19599874-19599893 Msa0154840:five_prime_UTR 55.0%
GACAAGAGCCAGCTAGTAGC+AGG - chr1_4:19599885-19599904 None:intergenic 55.0%
CGTTTATCCAAACAGGCCCG+CGG - chr1_4:19600456-19600475 None:intergenic 55.0%
CGCGGGCCTGTTTGGATAAA+CGG + chr1_4:19600454-19600473 Msa0154840:intron 55.0%
GAGGTCGTCCACAGAACCAA+GGG - chr1_4:19601144-19601163 None:intergenic 55.0%
AGAGGTCGTCCACAGAACCA+AGG - chr1_4:19601145-19601164 None:intergenic 55.0%
! TGGTTCTGTGGACGACCTCT+TGG + chr1_4:19601145-19601164 Msa0154840:CDS 55.0%
!! GCCAATGGATTGAGCGAAGG+TGG - chr1_4:19601254-19601273 None:intergenic 55.0%
!! AGGGCCAATGGATTGAGCGA+AGG - chr1_4:19601257-19601276 None:intergenic 55.0%
TTCGCTCAATCCATTGGCCC+TGG + chr1_4:19601256-19601275 Msa0154840:CDS 55.0%
ATGGGATCATCCAGGGCCAA+TGG - chr1_4:19601269-19601288 None:intergenic 55.0%
AGAGATGCAGCTCCACGACA+TGG - chr1_4:19601624-19601643 None:intergenic 55.0%
TGTCGTGGAGCTGCATCTCT+CGG + chr1_4:19601624-19601643 Msa0154840:intron 55.0%
TGAAGTTCCCTGTCCGTGCA+CGG + chr1_4:19601991-19602010 Msa0154840:CDS 55.0%
! TACGAGACTTGCTCCGTGCA+CGG - chr1_4:19602007-19602026 None:intergenic 55.0%
! TTGAGGCATCAGCAAGGCCA+AGG - chr1_4:19602040-19602059 None:intergenic 55.0%
GATACTCCACAATGGCGTGC+AGG + chr1_4:19602161-19602180 Msa0154840:CDS 55.0%
TTTGGACCTGCACGCCATTG+TGG - chr1_4:19602170-19602189 None:intergenic 55.0%
CAATGGCGTGCAGGTCCAAA+TGG + chr1_4:19602170-19602189 Msa0154840:CDS 55.0%
!! GATGGAGGCCCTTGGTTCTG+TGG + chr1_4:19601133-19601152 Msa0154840:exon 60.0%
CCTCTTCTGCAACCTCCTCC+TGG - chr1_4:19601788-19601807 None:intergenic 60.0%
CCAGGAGGAGGTTGCAGAAG+AGG + chr1_4:19601785-19601804 Msa0154840:intron 60.0%
ACTTGCTCCGTGCACGGACA+GGG - chr1_4:19602001-19602020 None:intergenic 60.0%
TCTCGTAGCAAGCCTCGCCT+TGG + chr1_4:19602020-19602039 Msa0154840:CDS 60.0%
! TGACTAGCCGCGGGCCTGTT+TGG + chr1_4:19600446-19600465 Msa0154840:intron 65.0%
! GACTTGCTCCGTGCACGGAC+AGG - chr1_4:19602002-19602021 None:intergenic 65.0%
GCATCAGCAAGGCCAAGGCG+AGG - chr1_4:19602035-19602054 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 19599793 19602743 19599793 ID=Msa0154840;Name=Msa0154840
chr1_4 mRNA 19599793 19602743 19599793 ID=Msa0154840-mRNA-1;Parent=Msa0154840;Name=Msa0154840-mRNA-1;_AED=0.07;_eAED=0.07;_QI=144|1|1|1|0.5|0.66|3|388|244
chr1_4 exon 19599793 19599934 19599793 ID=Msa0154840-mRNA-1:exon:7209;Parent=Msa0154840-mRNA-1
chr1_4 exon 19601132 19601301 19601132 ID=Msa0154840-mRNA-1:exon:7210;Parent=Msa0154840-mRNA-1
chr1_4 exon 19601789 19602743 19601789 ID=Msa0154840-mRNA-1:exon:7211;Parent=Msa0154840-mRNA-1
chr1_4 five_prime_UTR 19599793 19599934 19599793 ID=Msa0154840-mRNA-1:five_prime_utr;Parent=Msa0154840-mRNA-1
chr1_4 five_prime_UTR 19601132 19601133 19601132 ID=Msa0154840-mRNA-1:five_prime_utr;Parent=Msa0154840-mRNA-1
chr1_4 CDS 19601134 19601301 19601134 ID=Msa0154840-mRNA-1:cds;Parent=Msa0154840-mRNA-1
chr1_4 CDS 19601789 19602355 19601789 ID=Msa0154840-mRNA-1:cds;Parent=Msa0154840-mRNA-1
chr1_4 three_prime_UTR 19602356 19602743 19602356 ID=Msa0154840-mRNA-1:three_prime_utr;Parent=Msa0154840-mRNA-1
Gene Sequence

>Msa0154840

ATGGAGGCCCTTGGTTCTGTGGACGACCTCTTGGATTTCTCATCTGACATAGGTGAGGATGATGATGATGACAAACCTAAGAAAGCCTTTCCTTCACTCAAACCAGAATGCAGTGATCCACCTTCGCTCAATCCATTGGCCCTGGATGATCCCATCAATTCACTTTCTGAGGAGGTTGCAGAAGAGGAGCTTGAATGGCTGTCCAACAAAGATGCATTTCCGGCTGTTGAAACGTTTGTTGAGTTGTCCTGTATTCAACCGGATCTTTTGAAGCATCAAATGACATCCCCAAAGCTCGAGAACAGCACAAGCAGCAGCAACAGCAATAACAGTTCCAACAGCATTACCCTCTTAAGTGGCTACAATCACATGAAGTTCCCTGTCCGTGCACGGAGCAAGTCTCGTAGCAAGCCTCGCCTTGGCCTTGCTGATGCCTCAAACCTACAATTCCCGTGGAAACAACCGAGTACCAAAACTTCCAAAGAGAAAGTGAAACAAACCCCAACCATTGGGAGGAAATGTCATCATTGTGGAGTTGATGATACTCCACAATGGCGTGCAGGTCCAAATGGTCCAAAGACACTTTGTAATGCATGTGGGGTTAGGTATAAGTCTGGCCGACTTGTACCTGAATACCGTCCTGCAAATAGCCCAACTTTTCGCAGTGACATGCATTCTAATTCCCACAGGAAAGTAGTGGAGATGAGGAAGCAGAAGGGAATGGGAACGGGTTGA

Protein sequence

>Msa0154840

MEALGSVDDLLDFSSDIGEDDDDDKPKKAFPSLKPECSDPPSLNPLALDDPINSLSEEVAEEELEWLSNKDAFPAVETFVELSCIQPDLLKHQMTSPKLENSTSSSNSNNSSNSITLLSGYNHMKFPVRARSKSRSKPRLGLADASNLQFPWKQPSTKTSKEKVKQTPTIGRKCHHCGVDDTPQWRAGPNGPKTLCNACGVRYKSGRLVPEYRPANSPTFRSDMHSNSHRKVVEMRKQKGMGTG*