AlfalfaGEDB | Msa0295640

M. sativa cultivar zhongmu-4 / Msa0295640

KEGG: -
GO: GO:0005575 GO:0005623 GO:0005886 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0016020 GO:0023052 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0071944
PFAM: PF13855.9

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295640	XP_013464722.1	97.607	585	14	0	1	585	1	585	0.0	1112

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295640	sp\|Q6K7R2\|PIRL6_ORYSJ	66.099	587	196	2	1	585	1	586	0.0	706

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0185640	Msa0295640	0.808474	3.042200e-50	-8.615850e-47
Msa0215320	Msa0295640	0.821225	4.520954e-53	-8.615850e-47
Msa0216300	Msa0295640	0.852115	5.706072e-61	-8.615850e-47
Msa0223410	Msa0295640	0.815089	1.105195e-51	-8.615850e-47
Msa0226250	Msa0295640	-0.813073	3.078027e-51	-8.615850e-47
Msa0256500	Msa0295640	0.957240	4.370263e-115	-8.615850e-47
Msa0270440	Msa0295640	0.831041	2.089458e-55	-8.615850e-47
Msa0280660	Msa0295640	0.826360	2.831468e-54	-8.615850e-47
Msa0295640	Msa0309080	0.833363	5.569217e-56	-8.615850e-47
Msa0295640	Msa0342340	0.813156	2.952216e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295640	MtrunA17_Chr2g0317831	97.607	585	14	0	1	585	1	585	0.0	1112
Msa0295640	MtrunA17_Chr1g0169841	30.303	528	335	19	48	557	106	618	1.79e-31	130
Msa0295640	MtrunA17_Chr1g0169841	28.976	459	257	17	48	446	250	699	5.15e-21	97.8
Msa0295640	MtrunA17_Chr1g0169841	31.016	374	186	17	204	542	100	436	9.63e-15	77.8
Msa0295640	MtrunA17_Chr8g0357151	32.490	514	297	19	63	562	118	595	3.89e-30	126
Msa0295640	MtrunA17_Chr1g0165221	29.074	540	316	19	84	564	118	649	2.17e-29	124
Msa0295640	MtrunA17_Chr1g0165221	28.902	519	313	24	63	540	216	719	2.20e-21	99.0
Msa0295640	MtrunA17_Chr1g0165221	31.071	280	155	10	61	332	502	751	2.94e-15	79.7
Msa0295640	MtrunA17_Chr1g0165221	27.685	419	233	14	156	540	97	479	1.68e-12	70.9
Msa0295640	MtrunA17_Chr1g0190411	27.675	542	364	16	31	559	66	592	4.14e-28	120

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0295640	AT3G15410.1	68.889	585	181	1	1	585	1	584	0.0	795
Msa0295640	AT3G15410.2	68.190	591	181	2	1	585	1	590	0.0	788
Msa0295640	AT2G33170.2	31.239	557	303	24	60	551	100	641	2.01e-31	130
Msa0295640	AT2G33170.2	26.257	537	321	18	61	546	197	709	4.76e-20	95.1
Msa0295640	AT2G33170.2	27.932	469	246	16	111	569	105	491	6.09e-18	88.6
Msa0295640	AT2G33170.2	29.039	458	239	22	47	482	350	743	1.15e-17	87.8
Msa0295640	AT2G33170.1	31.239	557	303	24	60	551	100	641	2.01e-31	130
Msa0295640	AT2G33170.1	26.257	537	321	18	61	546	197	709	4.76e-20	95.1
Msa0295640	AT2G33170.1	27.932	469	246	16	111	569	105	491	6.09e-18	88.6
Msa0295640	AT2G33170.1	29.039	458	239	22	47	482	350	743	1.15e-17	87.8

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Find 171 sgRNAs with CRISPR-Local

Find 669 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACATGCTGAATGGCATAC+CGG	0.562997	2_3:+48278874	Msa0295640:CDS
AAACTCAATCCAGGAGTTGC+CGG	0.412380	2_3:+48282149	Msa0295640:CDS
AAAGTTCAACCGGCAACTCC+TGG	0.419586	2_3:-48282158	None:intergenic
AACTTTCTATGGGAGGGTTA+GGG	0.433807	2_3:+48282064	Msa0295640:CDS
AAGAAAATGTTTAACCTGGA+GGG	0.577531	2_3:-48282193	None:intergenic
AAGAAAGACTCACTCTCCAA+TGG	0.596454	2_3:-48276994	None:intergenic
AAGCATCTTCCTAGCTCACT+AGG	0.569876	2_3:-48277344	None:intergenic
AAGTCCCGTCAGATATATTG+GGG	0.647071	2_3:+48284168	Msa0295640:CDS
AATCAAATTAAAGACTGGCC+AGG	0.556784	2_3:+48283171	Msa0295640:CDS
AATCTCAGTAATGCTGGTGT+AGG	0.600846	2_3:-48280562	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTACACTTCTATTTGGATT+TGG	-	chr2_3:48275313-48275332	None:intergenic	30.0%
CAATAAAGCAAAATGTGTGA+AGG	-	chr2_3:48275559-48275578	None:intergenic	30.0%
ACCATAATAGTCTCTGATAT+CGG	-	chr2_3:48276148-48276167	None:intergenic	30.0%
ATAAGCTATATATCCCAACA+AGG	-	chr2_3:48276231-48276250	None:intergenic	30.0%
AACATAGACTTAAACTCTCT+AGG	-	chr2_3:48276351-48276370	None:intergenic	30.0%
AGAGAGTTTAAGTCTATGTT+TGG	+	chr2_3:48276351-48276370	Msa0295640:intron	30.0%
ACATTCAACTCATTGTAAAG+TGG	+	chr2_3:48276457-48276476	Msa0295640:intron	30.0%
TTAAATGTGGAACCAAACAT+AGG	+	chr2_3:48276678-48276697	Msa0295640:intron	30.0%
TAAATGTGGAACCAAACATA+GGG	+	chr2_3:48276679-48276698	Msa0295640:intron	30.0%
TTATCTCATTACCCTATGTT+TGG	-	chr2_3:48276693-48276712	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_3	gene	48275251	48285867	48275251	ID=Msa0295640;Name=Msa0295640
chr2_3	mRNA	48275251	48285867	48275251	ID=Msa0295640-mRNA-1;Parent=Msa0295640;Name=Msa0295640-mRNA-1;_AED=0.11;_eAED=0.11;_QI=207\|1\|1\|1\|1\|1\|21\|222\|585
chr2_3	exon	48275251	48275522	48275251	ID=Msa0295640-mRNA-1:exon:15095;Parent=Msa0295640-mRNA-1
chr2_3	exon	48275598	48275664	48275598	ID=Msa0295640-mRNA-1:exon:15096;Parent=Msa0295640-mRNA-1
chr2_3	exon	48276867	48277003	48276867	ID=Msa0295640-mRNA-1:exon:15097;Parent=Msa0295640-mRNA-1
chr2_3	exon	48277099	48277185	48277099	ID=Msa0295640-mRNA-1:exon:15098;Parent=Msa0295640-mRNA-1
chr2_3	exon	48277310	48277385	48277310	ID=Msa0295640-mRNA-1:exon:15099;Parent=Msa0295640-mRNA-1
chr2_3	exon	48278503	48278577	48278503	ID=Msa0295640-mRNA-1:exon:15100;Parent=Msa0295640-mRNA-1
chr2_3	exon	48278697	48278766	48278697	ID=Msa0295640-mRNA-1:exon:15101;Parent=Msa0295640-mRNA-1
chr2_3	exon	48278870	48278947	48278870	ID=Msa0295640-mRNA-1:exon:15102;Parent=Msa0295640-mRNA-1
chr2_3	exon	48279128	48279188	48279128	ID=Msa0295640-mRNA-1:exon:15103;Parent=Msa0295640-mRNA-1
chr2_3	exon	48279315	48279393	48279315	ID=Msa0295640-mRNA-1:exon:15104;Parent=Msa0295640-mRNA-1
chr2_3	exon	48279594	48279684	48279594	ID=Msa0295640-mRNA-1:exon:15105;Parent=Msa0295640-mRNA-1
chr2_3	exon	48280407	48280467	48280407	ID=Msa0295640-mRNA-1:exon:15106;Parent=Msa0295640-mRNA-1
chr2_3	exon	48280546	48280613	48280546	ID=Msa0295640-mRNA-1:exon:15107;Parent=Msa0295640-mRNA-1
chr2_3	exon	48280702	48280772	48280702	ID=Msa0295640-mRNA-1:exon:15108;Parent=Msa0295640-mRNA-1
chr2_3	exon	48282063	48282200	48282063	ID=Msa0295640-mRNA-1:exon:15109;Parent=Msa0295640-mRNA-1
chr2_3	exon	48283153	48283257	48283153	ID=Msa0295640-mRNA-1:exon:15110;Parent=Msa0295640-mRNA-1
chr2_3	exon	48283898	48284022	48283898	ID=Msa0295640-mRNA-1:exon:15111;Parent=Msa0295640-mRNA-1
chr2_3	exon	48284151	48284247	48284151	ID=Msa0295640-mRNA-1:exon:15112;Parent=Msa0295640-mRNA-1
chr2_3	exon	48284806	48284880	48284806	ID=Msa0295640-mRNA-1:exon:15113;Parent=Msa0295640-mRNA-1
chr2_3	exon	48285196	48285251	48285196	ID=Msa0295640-mRNA-1:exon:15114;Parent=Msa0295640-mRNA-1
chr2_3	exon	48285570	48285867	48285570	ID=Msa0295640-mRNA-1:exon:15115;Parent=Msa0295640-mRNA-1
chr2_3	five_prime_UTR	48275251	48275457	48275251	ID=Msa0295640-mRNA-1:five_prime_utr;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48275458	48275522	48275458	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48275598	48275664	48275598	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48276867	48277003	48276867	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48277099	48277185	48277099	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48277310	48277385	48277310	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48278503	48278577	48278503	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48278697	48278766	48278697	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48278870	48278947	48278870	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48279128	48279188	48279128	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48279315	48279393	48279315	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48279594	48279684	48279594	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48280407	48280467	48280407	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48280546	48280613	48280546	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48280702	48280772	48280702	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48282063	48282200	48282063	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48283153	48283257	48283153	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48283898	48284022	48283898	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48284151	48284247	48284151	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48284806	48284880	48284806	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48285196	48285251	48285196	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	CDS	48285570	48285645	48285570	ID=Msa0295640-mRNA-1:cds;Parent=Msa0295640-mRNA-1
chr2_3	three_prime_UTR	48285646	48285867	48285646	ID=Msa0295640-mRNA-1:three_prime_utr;Parent=Msa0295640-mRNA-1

Gene Sequence

>Msa0295640

ATGGATCGGCTTCTCAAATCCGCCAGATCATCCGGTTCTCTCAACCTCTCCAACCGTTCCCTCAGTGAAGTCCCCGTTGAAGTTTATCGCAATCTCGATGGAATCGGTGGTGATGATGATAAATGGTGGGAGGCTGTGGAGCTTCAGAAACTCATTTTGGCTCACAATAGTATTGAATTGTTAAAGGAAGATATCAGAAATTTATCTTGTCTCGTTGTTTTGAATCTTAGCCACAATAGTCTTTCTCAGCTTCCTGCTGCCATTGGAGAGCTACCAGAGCTGAAGATGTTGGATGTTTCGCATAATTCGATAGTTAGAATACCGGAGGAGATTGGATCAGCTGCGTCACTTGTGAAGTTTGATTGTTCAAATAATCAGCTCATGGAACTTCCTAGTGAGCTAGGAAGATGCTTGGCGTTGTCGGACTTAAAGGGATCAAACAATCTTATTGCAAGCTTGCCAGAAGATTTAGCAAAATGTTCCAAATTGTCTAAGCTAGATATGGAGGGAAACAAGCTTACAGTGATATCTGAAAATCTCATTTCATCATGGACAATGCTTACTGAATTAAATGCAGCAAAAAACATGCTGAATGGCATACCGGTCGGCATTGGAGGCCTTTCACGTTTAATTCGTCTTGATCTCCATCAGAACAGAATCTCATCAATCCCTTCATCAATCATTGGTTGTCATTCACTTGCAGAGTTTTATTTGGGGAATAATAATATTTCTACAATACCAGTGGAGATAGGAGAACTTTCTCGGCTTGGGACATTCGATCTTCACTCTAACCAGCTGAAGGACTATCCTGTGGAGGCATGCAAATTGAGTCTTTTAGTCTTGAATCTTTCAAATAATTCACTGAGTGGGTTACCTCCTGAAATGGGCAAGATGACTAGCTTGAGGAAACTTCTGCTTAGCGGAAACCCATTGCGGACTCTTAGAAGCTCATTAGTCACTGGACCTACACCAGCATTACTGAGATTTCTCCGGAGTAGACTTTCTCAAGGTGAAGATTCTGAAGCTGCAACCACTTCAAAAAAGGACATAATTGCAATGGCTACCCGATTATCTATCTCTTCAAAGGAACTTTCTATGGGAGGGTTAGGGTTGAGTGCTATTCCACCTGAAGTATGGGAATCTGAGGAGGTCATAAAACTTGATCTTTCCAAAAACTCAATCCAGGAGTTGCCGGTTGAACTTTCTTCCTGTGTTTCCCTCCAGACATTGATTTTATCGAAGAATCAAATTAAAGACTGGCCAGGTTCAGTTCTTAAATCACTTTCGAGTCTTTCATGTTTGAAGCTGGACTACAATCCCCTTAGACAGATACCTTCAAATGGTTTAGAAGCGGTGCCTAAGCTTCAGATCCTGGATCTAAGTGGTAATGAAGCTTCATTACTAGATGGCCCTTCATTTTCTAGTTTGCCAAACCTTCAAGAGCTATACCTGAGAAAAATGCGTCTCACTGAAGTCCCGTCAGATATATTGGGGTCTCATCAACTACGGATCCTTGACTTGAGTCAGAATTCCCTTCAATCAATTCCAGAGGGACTAAAAAATAGCACTTCTCTCGTGGAGCTTGACCTATCTGATAACAACATCTCAGCCCTTCCACCTGAGCTGGGTCTACTGGAACCAAGCCTTCAGGTGTTGAGACTTGATGGGAACCCACTCAGAAGCATTAGGAGGACTGTCTTGGATAAAGGAACTAAAGCTGTTCTGAAATATTTGAAGGACAAATTGCCAGAGGAGTAG

Protein sequence

>Msa0295640

MDRLLKSARSSGSLNLSNRSLSEVPVEVYRNLDGIGGDDDKWWEAVELQKLILAHNSIELLKEDIRNLSCLVVLNLSHNSLSQLPAAIGELPELKMLDVSHNSIVRIPEEIGSAASLVKFDCSNNQLMELPSELGRCLALSDLKGSNNLIASLPEDLAKCSKLSKLDMEGNKLTVISENLISSWTMLTELNAAKNMLNGIPVGIGGLSRLIRLDLHQNRISSIPSSIIGCHSLAEFYLGNNNISTIPVEIGELSRLGTFDLHSNQLKDYPVEACKLSLLVLNLSNNSLSGLPPEMGKMTSLRKLLLSGNPLRTLRSSLVTGPTPALLRFLRSRLSQGEDSEAATTSKKDIIAMATRLSISSKELSMGGLGLSAIPPEVWESEEVIKLDLSKNSIQELPVELSSCVSLQTLILSKNQIKDWPGSVLKSLSSLSCLKLDYNPLRQIPSNGLEAVPKLQILDLSGNEASLLDGPSFSSLPNLQELYLRKMRLTEVPSDILGSHQLRILDLSQNSLQSIPEGLKNSTSLVELDLSDNNISALPPELGLLEPSLQVLRLDGNPLRSIRRTVLDKGTKAVLKYLKDKLPEE*