Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846400 | XP_003613912.1 | 99.099 | 222 | 2 | 0 | 1 | 222 | 1 | 222 | 1.97e-157 | 444 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846400 | sp|Q9SEL5|VTI12_ARATH | 71.622 | 222 | 63 | 0 | 1 | 222 | 1 | 222 | 1.21e-114 | 329 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846400 | G7JWJ8 | 99.099 | 222 | 2 | 0 | 1 | 222 | 1 | 222 | 9.39e-158 | 444 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008840 | Msa0846400 | 0.809323 | 2.002865e-50 | -8.615850e-47 |
| Msa0014830 | Msa0846400 | 0.802117 | 6.533167e-49 | -8.615850e-47 |
| Msa0033880 | Msa0846400 | 0.810469 | 1.134800e-50 | -8.615850e-47 |
| Msa0057750 | Msa0846400 | 0.809803 | 1.579253e-50 | -8.615850e-47 |
| Msa0077540 | Msa0846400 | 0.807742 | 4.356528e-50 | -8.615850e-47 |
| Msa0103070 | Msa0846400 | 0.811392 | 7.163078e-51 | -8.615850e-47 |
| Msa0624550 | Msa0846400 | -0.803461 | 3.447722e-49 | -8.615850e-47 |
| Msa0766670 | Msa0846400 | 0.828608 | 8.179407e-55 | -8.615850e-47 |
| Msa0127850 | Msa0846400 | 0.811546 | 6.634024e-51 | -8.615850e-47 |
| Msa0174000 | Msa0846400 | 0.812891 | 3.373887e-51 | -8.615850e-47 |
| Msa0439890 | Msa0846400 | 0.804012 | 2.650174e-49 | -8.615850e-47 |
| Msa0462880 | Msa0846400 | 0.809935 | 1.479745e-50 | -8.615850e-47 |
| Msa0478580 | Msa0846400 | 0.802014 | 6.857679e-49 | -8.615850e-47 |
| Msa0533960 | Msa0846400 | -0.807607 | 4.654775e-50 | -8.615850e-47 |
| Msa0846400 | Msa0921870 | 0.806494 | 8.004088e-50 | -8.615850e-47 |
| Msa0846400 | Msa0928120 | 0.823253 | 1.530111e-53 | -8.615850e-47 |
| Msa0846400 | Msa0960830 | 0.805246 | 1.464599e-49 | -8.615850e-47 |
| Msa0846400 | Msa1089740 | -0.811916 | 5.510808e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846400 | MtrunA17_Chr5g0418041 | 99.099 | 222 | 2 | 0 | 1 | 222 | 1 | 222 | 1.81e-161 | 444 |
| Msa0846400 | MtrunA17_Chr3g0091631 | 67.568 | 222 | 71 | 1 | 1 | 222 | 64 | 284 | 2.28e-106 | 308 |
| Msa0846400 | MtrunA17_Chr6g0453631 | 62.727 | 220 | 81 | 1 | 1 | 220 | 1 | 219 | 8.27e-103 | 296 |
| Msa0846400 | MtrunA17_Chr7g0217961 | 60.633 | 221 | 86 | 1 | 1 | 221 | 1 | 220 | 1.26e-95 | 278 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0846400 | AT1G26670.1 | 71.622 | 222 | 63 | 0 | 1 | 222 | 1 | 222 | 1.23e-115 | 329 |
| Msa0846400 | AT3G29100.3 | 61.086 | 221 | 85 | 1 | 1 | 221 | 1 | 220 | 7.10e-97 | 281 |
| Msa0846400 | AT5G39510.1 | 63.348 | 221 | 80 | 1 | 1 | 221 | 1 | 220 | 1.27e-90 | 266 |
| Msa0846400 | AT3G29100.1 | 60.947 | 169 | 66 | 0 | 53 | 221 | 26 | 194 | 1.89e-72 | 219 |
| Msa0846400 | AT3G29100.2 | 61.446 | 166 | 64 | 0 | 56 | 221 | 1 | 166 | 2.40e-71 | 215 |
| Msa0846400 | AT3G29100.4 | 61.446 | 166 | 64 | 0 | 56 | 221 | 1 | 166 | 2.40e-71 | 215 |
| Msa0846400 | AT3G29100.5 | 61.446 | 166 | 64 | 0 | 56 | 221 | 1 | 166 | 2.40e-71 | 215 |
| Msa0846400 | AT5G39630.1 | 38.967 | 213 | 123 | 3 | 1 | 213 | 1 | 206 | 4.74e-41 | 139 |
Find 64 sgRNAs with CRISPR-Local
Find 313 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTCTCCTGAGCTCTCATAAA+AGG | 0.204329 | 5_4:-26315681 | Msa0846400:CDS |
| TTCTCTGCCTTGCAGCTTCA+TGG | 0.218110 | 5_4:-26315438 | Msa0846400:intron |
| TCAGGAGAGTCTCGCGTTGC+TGG | 0.339108 | 5_4:+26315695 | None:intergenic |
| TAGTCTTTGGGATGTCGTTT+TGG | 0.342258 | 5_4:+26320215 | None:intergenic |
| TGGATCCTTGCATCTTTGAT+TGG | 0.370202 | 5_4:-26315345 | Msa0846400:CDS |
| CGCCATAGGGAAGGGGTAAC+CGG | 0.374074 | 5_4:-26320244 | Msa0846400:five_prime_UTR |
| TCTCTGCCTTGCAGCTTCAT+GGG | 0.388729 | 5_4:-26315437 | Msa0846400:intron |
| TTCAAAGACTTGGCTCATCT+TGG | 0.397414 | 5_4:+26320113 | None:intergenic |
| CGCGTTGCTGGTGTAAATCC+TGG | 0.403633 | 5_4:+26315707 | None:intergenic |
| AACATCTCCTACTGCTGATC+AGG | 0.405665 | 5_4:-26317841 | Msa0846400:CDS |
| ATCAGTCAAGTGATAGAATC+CGG | 0.405948 | 5_4:-26315780 | Msa0846400:CDS |
| ACTTGATGACGCAGATGTTC+TGG | 0.409006 | 5_4:-26318080 | Msa0846400:intron |
| CTCTCTCTAGATTCGGAAGA+TGG | 0.418028 | 5_4:-26317970 | Msa0846400:intron |
| AGAAGTGGAAGTGCATTTGC+GGG | 0.418730 | 5_4:+26320050 | None:intergenic |
| ACTTCTCTTCTTTCTGATCA+AGG | 0.423541 | 5_4:-26320033 | Msa0846400:intron |
| GCACGGTTCTGTGGCTCTCC+CGG | 0.425240 | 5_4:+26315761 | None:intergenic |
| TGGAAGGGCGGACACGCATT+TGG | 0.434717 | 5_4:-26317793 | Msa0846400:intron |
| CTACTGCTGATCAGGCTGCC+CGG | 0.437441 | 5_4:-26317833 | Msa0846400:CDS |
| TACTGCTGATCAGGCTGCCC+GGG | 0.440409 | 5_4:-26317832 | Msa0846400:CDS |
| TTTAATACGTTGTACGTGCT+TGG | 0.456966 | 5_4:-26315234 | Msa0846400:three_prime_UTR |
| GGCTGCCCGGGACGATTTGT+TGG | 0.463890 | 5_4:-26317820 | Msa0846400:CDS |
| GAGAAGTGGAAGTGCATTTG+CGG | 0.465441 | 5_4:+26320049 | None:intergenic |
| TCATCTTGGCTAATTTGAGT+TGG | 0.466838 | 5_4:+26320127 | None:intergenic |
| CTAATTTGAGTTGGATCCAA+TGG | 0.480854 | 5_4:+26320136 | None:intergenic |
| GCTGCAGACTTCTTGCCTCA+AGG | 0.484187 | 5_4:+26317946 | None:intergenic |
| GGAGAATGACAAGAAACAAA+TGG | 0.485202 | 5_4:-26315365 | Msa0846400:CDS |
| GATTGAGACACCAAGCTCTT+CGG | 0.496391 | 5_4:+26315732 | None:intergenic |
| CGGGACGATTTGTTGGAGAC+TGG | 0.497323 | 5_4:-26317813 | Msa0846400:CDS |
| AATGCTTCTTGCAAAGTTGA+GGG | 0.499099 | 5_4:-26317910 | Msa0846400:CDS |
| CAATGCTTCTTGCAAAGTTG+AGG | 0.500555 | 5_4:-26317911 | Msa0846400:CDS |
| GGAGAGCCACAGAACCGTGC+TGG | 0.506394 | 5_4:-26315758 | Msa0846400:CDS |
| TTGATCAGAAAGAAGAGAAG+TGG | 0.511107 | 5_4:+26320035 | None:intergenic |
| TGTGTAAAATCTAACGCCAT+AGG | 0.518550 | 5_4:-26320258 | Msa0846400:five_prime_UTR |
| AAGATGAGCCAAGTCTTTGA+AGG | 0.525620 | 5_4:-26320111 | Msa0846400:CDS |
| TCTCCTGAGCTCTCATAAAA+GGG | 0.525747 | 5_4:-26315680 | Msa0846400:intron |
| ATCCCTCTCACAGTAACCAT+TGG | 0.527322 | 5_4:-26320152 | Msa0846400:intron |
| GCTTGGTGTCTCAATCCTCC+AGG | 0.533304 | 5_4:-26315725 | Msa0846400:CDS |
| CATGATTCGTGAGTGTGTAA+TGG | 0.533354 | 5_4:-26315260 | Msa0846400:three_prime_UTR |
| TGCCGGTTACCCCTTCCCTA+TGG | 0.533421 | 5_4:+26320242 | None:intergenic |
| TGCTATTGACAAGAGTAAGA+AGG | 0.535455 | 5_4:-26315406 | Msa0846400:CDS |
| CTCTGCCTTGCAGCTTCATG+GGG | 0.535899 | 5_4:-26315436 | Msa0846400:intron |
| AAATCTAACGCCATAGGGAA+GGG | 0.538443 | 5_4:-26320252 | Msa0846400:five_prime_UTR |
| CGGTCTCCAGCACGGTTCTG+TGG | 0.543393 | 5_4:+26315752 | None:intergenic |
| TCTTGTCATTCTCCGTGACA+TGG | 0.544684 | 5_4:+26315374 | None:intergenic |
| CAGTCTCCAACAAATCGTCC+CGG | 0.546846 | 5_4:+26317814 | None:intergenic |
| AAAATCTAACGCCATAGGGA+AGG | 0.549539 | 5_4:-26320253 | Msa0846400:five_prime_UTR |
| ACGATTTGTTGGAGACTGGA+AGG | 0.558334 | 5_4:-26317809 | Msa0846400:CDS |
| GTGTAAAATCTAACGCCATA+GGG | 0.563594 | 5_4:-26320257 | Msa0846400:five_prime_UTR |
| CGATTTGTTGGAGACTGGAA+GGG | 0.564882 | 5_4:-26317808 | Msa0846400:CDS |
| AGAAAGATTAACTATGTCAG+TGG | 0.567712 | 5_4:-26315812 | Msa0846400:CDS |
| TCAGTCAAGTGATAGAATCC+GGG | 0.573979 | 5_4:-26315779 | Msa0846400:CDS |
| AATCTAACGCCATAGGGAAG+GGG | 0.579857 | 5_4:-26320251 | Msa0846400:five_prime_UTR |
| CGGGCAGCCTGATCAGCAGT+AGG | 0.581903 | 5_4:+26317834 | None:intergenic |
| GCTCATACCCTTCAAAGACT+TGG | 0.585923 | 5_4:+26320103 | None:intergenic |
| AGTCTCCAACAAATCGTCCC+GGG | 0.602854 | 5_4:+26317815 | None:intergenic |
| AAGCTCTTCGGTCTCCAGCA+CGG | 0.606997 | 5_4:+26315744 | None:intergenic |
| GAGCTCCAATCAAAGATGCA+AGG | 0.608726 | 5_4:+26315340 | None:intergenic |
| AATATGACAAACATCCTATG+TGG | 0.619963 | 5_4:+26315198 | None:intergenic |
| GTGCTGGAGACCGAAGAGCT+TGG | 0.633295 | 5_4:-26315742 | Msa0846400:CDS |
| AGATGAGCCAAGTCTTTGAA+GGG | 0.639178 | 5_4:-26320110 | Msa0846400:CDS |
| GTTGTATATAGAAACCACAT+AGG | 0.649149 | 5_4:-26315212 | Msa0846400:three_prime_UTR |
| GATTCGGAAGATGGACCTTG+AGG | 0.671716 | 5_4:-26317961 | Msa0846400:CDS |
| TTTGTTGGAGACTGGAAGGG+CGG | 0.671946 | 5_4:-26317805 | Msa0846400:CDS |
| GTTGCTGGTGTAAATCCTGG+AGG | 0.701813 | 5_4:+26315710 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TCATAATATTTAATATGATT+AGG | - | chr5_4:26315496-26315515 | Msa0846400:intron | 10.0% |
| !! | AAATTACAATTTAGTAATAA+GGG | + | chr5_4:26315542-26315561 | None:intergenic | 10.0% |
| !! | TAAATTACAATTTAGTAATA+AGG | + | chr5_4:26315543-26315562 | None:intergenic | 10.0% |
| !!! | TTATTTTATTATGTATCATT+TGG | - | chr5_4:26319490-26319509 | Msa0846400:intron | 10.0% |
| !! | TTAAATATTATGAACTCAAT+TGG | + | chr5_4:26315489-26315508 | None:intergenic | 15.0% |
| !! | TTAACGATTAAAATGAATTT+AGG | - | chr5_4:26315613-26315632 | Msa0846400:intron | 15.0% |
| !! | AGTTAATTACAAATGTTAAA+CGG | + | chr5_4:26317066-26317085 | None:intergenic | 15.0% |
| !! | ACTTGAAAAAAGAATTTAAA+AGG | - | chr5_4:26317501-26317520 | Msa0846400:intron | 15.0% |
| !!! | ATATTTTGTAGAGTTTAAAT+TGG | - | chr5_4:26318036-26318055 | Msa0846400:intron | 15.0% |
| !!! | TATTTTGTAGAGTTTAAATT+GGG | - | chr5_4:26318037-26318056 | Msa0846400:intron | 15.0% |
| !! | TCATTTAATTGTTTCATTAT+TGG | + | chr5_4:26318556-26318575 | None:intergenic | 15.0% |
| !! | TAATGAAACAATTAAATGAT+AGG | - | chr5_4:26318557-26318576 | Msa0846400:intron | 15.0% |
| !! | AATGAAACAATTAAATGATA+GGG | - | chr5_4:26318558-26318577 | Msa0846400:intron | 15.0% |
| !!! | AACAAACTTTCACTTTTTTT+AGG | - | chr5_4:26315380-26315399 | Msa0846400:CDS | 20.0% |
| !!! | ACAAACTTTCACTTTTTTTA+GGG | - | chr5_4:26315381-26315400 | Msa0846400:CDS | 20.0% |
| !!! | TGTTATCTGAATTTTTTTAG+TGG | - | chr5_4:26315781-26315800 | Msa0846400:CDS | 20.0% |
| !!! | GTTATCTGAATTTTTTTAGT+GGG | - | chr5_4:26315782-26315801 | Msa0846400:CDS | 20.0% |
| !! | CTTATCTATAAAAAAACAAG+TGG | - | chr5_4:26316107-26316126 | Msa0846400:intron | 20.0% |
| !!! | TTTTTTCAAGTTGTTTAGAT+CGG | + | chr5_4:26317492-26317511 | None:intergenic | 20.0% |
| !! | TATTTCTTGAAAATGAAAGA+AGG | - | chr5_4:26317635-26317654 | Msa0846400:intron | 20.0% |
| !! | TCAAAAATCAAGAAATACAT+GGG | + | chr5_4:26319412-26319431 | None:intergenic | 20.0% |
| !! | TTCAAAAATCAAGAAATACA+TGG | + | chr5_4:26319413-26319432 | None:intergenic | 20.0% |
| !!! | AATTTGTAGTGTTTTGAAAT+TGG | - | chr5_4:26319432-26319451 | Msa0846400:intron | 20.0% |
| !!! | TTTTATTATGTATCATTTGG+TGG | - | chr5_4:26319493-26319512 | Msa0846400:intron | 20.0% |
| !!! | TAAATGCTACTTTTTTCAAA+TGG | - | chr5_4:26319721-26319740 | Msa0846400:intron | 20.0% |
| !! | ACTAACAATCTTAATATAAG+GGG | + | chr5_4:26319862-26319881 | None:intergenic | 20.0% |
| !! | GACTAACAATCTTAATATAA+GGG | + | chr5_4:26319863-26319882 | None:intergenic | 20.0% |
| !! | AGACTAACAATCTTAATATA+AGG | + | chr5_4:26319864-26319883 | None:intergenic | 20.0% |
| !! | AGTTTCTTTCAAAAAATGAT+TGG | - | chr5_4:26320230-26320249 | Msa0846400:five_prime_UTR | 20.0% |
| ! | TGTTGAATTGAAACTTTGAA+AGG | + | chr5_4:26315364-26315383 | None:intergenic | 25.0% |
| !!! | GTTTTTAAGAAAAAAGTTGC+TGG | - | chr5_4:26315854-26315873 | Msa0846400:intron | 25.0% |
| !! | TTTTATAGATAAGCTAAGTG+TGG | + | chr5_4:26316100-26316119 | None:intergenic | 25.0% |
| ! | ACTAAAGGTAAATTGCAAAT+TGG | + | chr5_4:26316175-26316194 | None:intergenic | 25.0% |
| ! | ACTACAAAGAATGTTAAATG+AGG | + | chr5_4:26316250-26316269 | None:intergenic | 25.0% |
| ! | GAAGTAATAATGAATGGAAA+AGG | + | chr5_4:26316396-26316415 | None:intergenic | 25.0% |
| ! | TTGACAGAAGTAATAATGAA+TGG | + | chr5_4:26316402-26316421 | None:intergenic | 25.0% |
| ! | AATAAGGAGATTATATCAGA+TGG | - | chr5_4:26316674-26316693 | Msa0846400:intron | 25.0% |
| ! | ATTCTTGGATATATGTTAGT+TGG | + | chr5_4:26316936-26316955 | None:intergenic | 25.0% |
| ! | ATCCAAGAATATTGTGTATT+TGG | - | chr5_4:26316946-26316965 | Msa0846400:intron | 25.0% |
| ! | TACCAAATACACAATATTCT+TGG | + | chr5_4:26316951-26316970 | None:intergenic | 25.0% |
| !! | TATTGTGTATTTGGTAACTA+TGG | - | chr5_4:26316955-26316974 | Msa0846400:intron | 25.0% |
| ! | TTATTTGACTGAATGTTTCT+TGG | - | chr5_4:26317874-26317893 | Msa0846400:CDS | 25.0% |
| ! | ATAGGAAAAGAAGAGAAATA+AGG | - | chr5_4:26318096-26318115 | Msa0846400:CDS | 25.0% |
| ! | TAGGAAAAGAAGAGAAATAA+GGG | - | chr5_4:26318097-26318116 | Msa0846400:CDS | 25.0% |
| ! | CGTAAAATTAGAGAAATGAT+CGG | + | chr5_4:26318212-26318231 | None:intergenic | 25.0% |
| ! | GAACATATAGTTATTGATGA+GGG | - | chr5_4:26318256-26318275 | Msa0846400:intron | 25.0% |
| ! | TGAATGAGTCTACAAAATTA+TGG | - | chr5_4:26318476-26318495 | Msa0846400:intron | 25.0% |
| ! | TTGTTTAAGCTATGAACTAT+GGG | + | chr5_4:26318681-26318700 | None:intergenic | 25.0% |
| ! | TTTGTTTAAGCTATGAACTA+TGG | + | chr5_4:26318682-26318701 | None:intergenic | 25.0% |
| ! | CTTAAACAAATTCATGAATC+TGG | - | chr5_4:26318692-26318711 | Msa0846400:intron | 25.0% |
| ! | TCAGAATTACTAAAGAATGA+AGG | + | chr5_4:26318847-26318866 | None:intergenic | 25.0% |
| ! | AAGATTCAATTATGAGCATT+GGG | + | chr5_4:26318969-26318988 | None:intergenic | 25.0% |
| !!! | TCTTCATTTAGTTCTTGTTT+AGG | + | chr5_4:26319198-26319217 | None:intergenic | 25.0% |
| ! | ATTGTCATTACTTGCAAATA+AGG | - | chr5_4:26319236-26319255 | Msa0846400:intron | 25.0% |
| ! | AAAATACAAGATATGCAGAT+AGG | + | chr5_4:26319303-26319322 | None:intergenic | 25.0% |
| ! | CAAAAATCAAGAAATACATG+GGG | + | chr5_4:26319411-26319430 | None:intergenic | 25.0% |
| !! | TTTGAAATTGGTAGACATTA+AGG | - | chr5_4:26319444-26319463 | Msa0846400:intron | 25.0% |
| !! | TATCATTTGGTGGTAAATTA+TGG | - | chr5_4:26319503-26319522 | Msa0846400:intron | 25.0% |
| ! | TAAATTATGGATAATGTTGC+AGG | - | chr5_4:26319516-26319535 | Msa0846400:intron | 25.0% |
| ! | ATCATATCATGATTCTTTCA+TGG | + | chr5_4:26319794-26319813 | None:intergenic | 25.0% |
| !! | TCATGATATGATTTTCTCTA+TGG | - | chr5_4:26319802-26319821 | Msa0846400:intron | 25.0% |
| ! | TTACATCACAACTGCTATTT+CGG | - | chr5_4:26315568-26315587 | Msa0846400:intron | 30.0% |
| TTAACAACCGTGAATAAGAA+GGG | + | chr5_4:26315597-26315616 | None:intergenic | 30.0% | |
| ATTTAGGTGTCAGTTGAAAT+CGG | - | chr5_4:26315629-26315648 | Msa0846400:intron | 30.0% | |
| AACACAATCAGCTGAAATAA+AGG | - | chr5_4:26316307-26316326 | Msa0846400:intron | 30.0% | |
| AAACAAGTGTAGTAGAGATT+AGG | - | chr5_4:26316499-26316518 | Msa0846400:intron | 30.0% | |
| TGTTATGACTAGACATGATA+GGG | - | chr5_4:26316539-26316558 | Msa0846400:intron | 30.0% | |
| !! | ACAACATTAGAAAGAGTGTT+GGG | - | chr5_4:26316571-26316590 | Msa0846400:intron | 30.0% |
| AGCACCTATCATAGAAAAAA+TGG | - | chr5_4:26316596-26316615 | Msa0846400:intron | 30.0% | |
| ACCTATCATAGAAAAAATGG+TGG | - | chr5_4:26316599-26316618 | Msa0846400:intron | 30.0% | |
| !!! | TCCACCATTTTTTCTATGAT+AGG | + | chr5_4:26316603-26316622 | None:intergenic | 30.0% |
| ! | GACCTGTAGATTTTGTAATA+AGG | - | chr5_4:26316658-26316677 | Msa0846400:intron | 30.0% |
| CTCCTTATTACAAAATCTAC+AGG | + | chr5_4:26316663-26316682 | None:intergenic | 30.0% | |
| CAAAATATATTGAGAGAGCA+CGG | - | chr5_4:26316860-26316879 | Msa0846400:intron | 30.0% | |
| CAATTAGCATACCAACTAAA+TGG | - | chr5_4:26316889-26316908 | Msa0846400:intron | 30.0% | |
| TGTTAGTTGGCCAAATATAT+TGG | + | chr5_4:26316923-26316942 | None:intergenic | 30.0% | |
| ! | GTATTTGGTAACTATGGATT+TGG | - | chr5_4:26316961-26316980 | Msa0846400:intron | 30.0% |
| GAACGAAAAAATTCAGTAAC+AGG | + | chr5_4:26317211-26317230 | None:intergenic | 30.0% | |
| !!! | AAGTTTTCTGAGATCAAAAC+TGG | - | chr5_4:26317264-26317283 | Msa0846400:intron | 30.0% |
| !!! | CAACTTTATTTTTCCTTCTC+TGG | + | chr5_4:26317704-26317723 | None:intergenic | 30.0% |
| AATCAAACTACCTACCATAA+TGG | - | chr5_4:26317830-26317849 | Msa0846400:CDS | 30.0% | |
| AGAAGTCACTACAAAAAATC+TGG | - | chr5_4:26317919-26317938 | Msa0846400:CDS | 30.0% | |
| AAAAATCTGGTAGTTGAAGT+AGG | - | chr5_4:26317932-26317951 | Msa0846400:CDS | 30.0% | |
| !! | AAACTTGAGTTGAGATTCAA+AGG | - | chr5_4:26318009-26318028 | Msa0846400:intron | 30.0% |
| TTCTCTAACCTGAGAAATTT+AGG | - | chr5_4:26318068-26318087 | Msa0846400:intron | 30.0% | |
| TATGTGTTCCTAAATTTCTC+AGG | + | chr5_4:26318079-26318098 | None:intergenic | 30.0% | |
| TGAGAAATTTAGGAACACAT+AGG | - | chr5_4:26318078-26318097 | Msa0846400:intron | 30.0% | |
| GAGAAATAAGGGAATTATAG+AGG | - | chr5_4:26318108-26318127 | Msa0846400:CDS | 30.0% | |
| ATAAGGGAATTATAGAGGAT+AGG | - | chr5_4:26318113-26318132 | Msa0846400:CDS | 30.0% | |
| GGAACATATAGTTATTGATG+AGG | - | chr5_4:26318255-26318274 | Msa0846400:intron | 30.0% | |
| TAACTCAGAATCATATGAGT+TGG | - | chr5_4:26318356-26318375 | Msa0846400:intron | 30.0% | |
| ! | TTTTCTGATAGGATCACATT+TGG | + | chr5_4:26318627-26318646 | None:intergenic | 30.0% |
| AAATGTGATCCTATCAGAAA+AGG | - | chr5_4:26318626-26318645 | Msa0846400:intron | 30.0% | |
| AAATTTGCAATGAACCCAAT+AGG | - | chr5_4:26318739-26318758 | Msa0846400:intron | 30.0% | |
| GAAGATTCAATTATGAGCAT+TGG | + | chr5_4:26318970-26318989 | None:intergenic | 30.0% | |
| GAAATGAAAGCAAATTTGAG+AGG | + | chr5_4:26319057-26319076 | None:intergenic | 30.0% | |
| TTGTTTGTCAGAATAACTCA+AGG | + | chr5_4:26319079-26319098 | None:intergenic | 30.0% | |
| ATTGAAATGACACGAGAATA+AGG | - | chr5_4:26319126-26319145 | Msa0846400:intron | 30.0% | |
| AGAAAGATTAACTATGTCAG+TGG | - | chr5_4:26319555-26319574 | Msa0846400:intron | 30.0% | |
| AATGTAGAAGATGTGATTGA+TGG | - | chr5_4:26319900-26319919 | Msa0846400:intron | 30.0% | |
| GTTGTATATAGAAACCACAT+AGG | - | chr5_4:26320155-26320174 | Msa0846400:intron | 30.0% | |
| AATATGACAAACATCCTATG+TGG | + | chr5_4:26320172-26320191 | None:intergenic | 30.0% | |
| GTTATAGTTTCATCAAACGC+AGG | + | chr5_4:26315188-26315207 | None:intergenic | 35.0% | |
| !! | CTAATTTGAGTTGGATCCAA+TGG | + | chr5_4:26315234-26315253 | None:intergenic | 35.0% |
| TCATCTTGGCTAATTTGAGT+TGG | + | chr5_4:26315243-26315262 | None:intergenic | 35.0% | |
| TTGATCAGAAAGAAGAGAAG+TGG | + | chr5_4:26315335-26315354 | None:intergenic | 35.0% | |
| ACTTCTCTTCTTTCTGATCA+AGG | - | chr5_4:26315334-26315353 | Msa0846400:CDS | 35.0% | |
| GTTAACAACCGTGAATAAGA+AGG | + | chr5_4:26315598-26315617 | None:intergenic | 35.0% | |
| GGATGACAATCGATAGTTTA+GGG | - | chr5_4:26315650-26315669 | Msa0846400:intron | 35.0% | |
| GATGACAATCGATAGTTTAG+GGG | - | chr5_4:26315651-26315670 | Msa0846400:intron | 35.0% | |
| CTTGTTAACACACTTTGTGT+TGG | - | chr5_4:26315825-26315844 | Msa0846400:CDS | 35.0% | |
| ! | CCAAAACCTTATTTCCAAGT+TGG | + | chr5_4:26315976-26315995 | None:intergenic | 35.0% |
| ! | CCAACTTGGAAATAAGGTTT+TGG | - | chr5_4:26315973-26315992 | Msa0846400:intron | 35.0% |
| CTTAACAGTTATTCAACTGC+TGG | + | chr5_4:26316021-26316040 | None:intergenic | 35.0% | |
| ACAAGTGGTACAGAATTGTT+AGG | - | chr5_4:26316122-26316141 | Msa0846400:intron | 35.0% | |
| CAGTAAAGAGTTGCAACTAA+AGG | + | chr5_4:26316190-26316209 | None:intergenic | 35.0% | |
| TGAGCAAAGCTAGTTAAACT+AGG | + | chr5_4:26316227-26316246 | None:intergenic | 35.0% | |
| GTTAATGAACTCACAGTTGA+TGG | - | chr5_4:26316268-26316287 | Msa0846400:intron | 35.0% | |
| TATTTCAGCTGATTGTGTTG+AGG | + | chr5_4:26316306-26316325 | None:intergenic | 35.0% | |
| ! | ATAATGAATGGAAAAGGCAC+TGG | + | chr5_4:26316390-26316409 | None:intergenic | 35.0% |
| !!! | CACTTGTTTTACTCTCTTGT+TGG | + | chr5_4:26316488-26316507 | None:intergenic | 35.0% |
| GTGTTATGACTAGACATGAT+AGG | - | chr5_4:26316538-26316557 | Msa0846400:intron | 35.0% | |
| ! | GACAACATTAGAAAGAGTGT+TGG | - | chr5_4:26316570-26316589 | Msa0846400:intron | 35.0% |
| ! | TAGAAAAAATGGTGGAAACC+CGG | - | chr5_4:26316607-26316626 | Msa0846400:intron | 35.0% |
| AAGGAGATTATATCAGATGG+AGG | - | chr5_4:26316677-26316696 | Msa0846400:intron | 35.0% | |
| TAAGTGGTGTCTCAAATACA+TGG | + | chr5_4:26316791-26316810 | None:intergenic | 35.0% | |
| ! | TATTTGAGACACCACTTAGT+GGG | - | chr5_4:26316793-26316812 | Msa0846400:intron | 35.0% |
| TGGCCAAATATATTGGACAT+GGG | + | chr5_4:26316916-26316935 | None:intergenic | 35.0% | |
| TTGGCCAAATATATTGGACA+TGG | + | chr5_4:26316917-26316936 | None:intergenic | 35.0% | |
| AGCTGATGATATTTACTGCA+CGG | - | chr5_4:26317103-26317122 | Msa0846400:intron | 35.0% | |
| CTTCATATGAAAGTAAACCG+TGG | + | chr5_4:26317339-26317358 | None:intergenic | 35.0% | |
| !!! | AGAAGCATTGCTTTTACACT+TGG | + | chr5_4:26317446-26317465 | None:intergenic | 35.0% |
| AATGCTTCTTGCAAAGTTGA+GGG | - | chr5_4:26317457-26317476 | Msa0846400:intron | 35.0% | |
| AAATGAAAGAAGGAAGCTTG+TGG | - | chr5_4:26317645-26317664 | Msa0846400:intron | 35.0% | |
| TCTCTTCTATATCTCCTCAA+TGG | - | chr5_4:26317778-26317797 | Msa0846400:intron | 35.0% | |
| CTCTTCTATATCTCCTCAAT+GGG | - | chr5_4:26317779-26317798 | Msa0846400:intron | 35.0% | |
| TGGTAGGTAGTTTGATTAAC+AGG | + | chr5_4:26317827-26317846 | None:intergenic | 35.0% | |
| TACCATAATGGCTCTTCATA+GGG | - | chr5_4:26317842-26317861 | Msa0846400:CDS | 35.0% | |
| TTCTACTCAAGCTTCTATCT+TGG | + | chr5_4:26317903-26317922 | None:intergenic | 35.0% | |
| GAATTATAGAGGATAGGAGA+TGG | - | chr5_4:26318119-26318138 | Msa0846400:CDS | 35.0% | |
| ! | GAGATGGATTCATGATGATT+TGG | - | chr5_4:26318135-26318154 | Msa0846400:intron | 35.0% |
| TGATCGGCAAATTTCTTTCT+TGG | + | chr5_4:26318196-26318215 | None:intergenic | 35.0% | |
| ! | AGAATCATATGAGTTGGACT+TGG | - | chr5_4:26318362-26318381 | Msa0846400:intron | 35.0% |
| ! | GAATCATATGAGTTGGACTT+GGG | - | chr5_4:26318363-26318382 | Msa0846400:intron | 35.0% |
| CATTAAACCATCGTCAGTTT+AGG | + | chr5_4:26318521-26318540 | None:intergenic | 35.0% | |
| ! | ATTTACCTCATTGGCCTATT+GGG | + | chr5_4:26318756-26318775 | None:intergenic | 35.0% |
| GAGTAGTTCATTTACCTCAT+TGG | + | chr5_4:26318765-26318784 | None:intergenic | 35.0% | |
| TGTGCTCAGATGAACTTATA+TGG | - | chr5_4:26318904-26318923 | Msa0846400:intron | 35.0% | |
| TCAGATGAACTTATATGGTC+TGG | - | chr5_4:26318909-26318928 | Msa0846400:intron | 35.0% | |
| ATGAACTTATATGGTCTGGT+TGG | - | chr5_4:26318913-26318932 | Msa0846400:intron | 35.0% | |
| GGCAAAAATGCTGAATGAAA+AGG | - | chr5_4:26319160-26319179 | Msa0846400:intron | 35.0% | |
| TATATGCACATTCATGTCTC+TGG | - | chr5_4:26319266-26319285 | Msa0846400:intron | 35.0% | |
| ATATGCACATTCATGTCTCT+GGG | - | chr5_4:26319267-26319286 | Msa0846400:intron | 35.0% | |
| GATAAGACAAATGAGAGAAC+TGG | + | chr5_4:26319389-26319408 | None:intergenic | 35.0% | |
| ATCAGTCAAGTGATAGAATC+CGG | - | chr5_4:26319587-26319606 | Msa0846400:intron | 35.0% | |
| ATTCTTTCATGGCAAAAGGA+AGG | + | chr5_4:26319783-26319802 | None:intergenic | 35.0% | |
| CATGATTCTTTCATGGCAAA+AGG | + | chr5_4:26319787-26319806 | None:intergenic | 35.0% | |
| TGCTATTGACAAGAGTAAGA+AGG | - | chr5_4:26319961-26319980 | Msa0846400:intron | 35.0% | |
| GGAGAATGACAAGAAACAAA+TGG | - | chr5_4:26320002-26320021 | Msa0846400:intron | 35.0% | |
| TTTAATACGTTGTACGTGCT+TGG | - | chr5_4:26320133-26320152 | Msa0846400:five_prime_UTR | 35.0% | |
| AAAATCTAACGCCATAGGGA+AGG | - | chr5_4:26315114-26315133 | Msa0846400:three_prime_UTR | 40.0% | |
| AAATCTAACGCCATAGGGAA+GGG | - | chr5_4:26315115-26315134 | Msa0846400:three_prime_UTR | 40.0% | |
| !!! | TAGTCTTTGGGATGTCGTTT+TGG | + | chr5_4:26315155-26315174 | None:intergenic | 40.0% |
| !!! | GGTGTCGACTTTTAGTCTTT+GGG | + | chr5_4:26315167-26315186 | None:intergenic | 40.0% |
| !!! | AGGTGTCGACTTTTAGTCTT+TGG | + | chr5_4:26315168-26315187 | None:intergenic | 40.0% |
| ATCCAATGGTTACTGTGAGA+GGG | + | chr5_4:26315220-26315239 | None:intergenic | 40.0% | |
| TTCAAAGACTTGGCTCATCT+TGG | + | chr5_4:26315257-26315276 | None:intergenic | 40.0% | |
| AAGATGAGCCAAGTCTTTGA+AGG | - | chr5_4:26315256-26315275 | Msa0846400:three_prime_UTR | 40.0% | |
| AGATGAGCCAAGTCTTTGAA+GGG | - | chr5_4:26315257-26315276 | Msa0846400:three_prime_UTR | 40.0% | |
| CGGATGACAATCGATAGTTT+AGG | - | chr5_4:26315649-26315668 | Msa0846400:intron | 40.0% | |
| TCATCGTTCAGCTGATAACT+AGG | + | chr5_4:26315713-26315732 | None:intergenic | 40.0% | |
| AGCTGAACGATGAAATGAAG+AGG | - | chr5_4:26315720-26315739 | Msa0846400:CDS | 40.0% | |
| ATGAAGAGGTCATTCCATTC+CGG | - | chr5_4:26315734-26315753 | Msa0846400:CDS | 40.0% | |
| CATATGCCTAACGTGTTAAC+CGG | + | chr5_4:26315756-26315775 | None:intergenic | 40.0% | |
| GGTTAACACGTTAGGCATAT+GGG | - | chr5_4:26315755-26315774 | Msa0846400:CDS | 40.0% | |
| AGGTCACATCATCCATTTCT+TGG | + | chr5_4:26315923-26315942 | None:intergenic | 40.0% | |
| AAGGCTCCAACTTGGAAATA+AGG | - | chr5_4:26315967-26315986 | Msa0846400:intron | 40.0% | |
| TGTCAGCAATGTTAGTGGTT+AGG | - | chr5_4:26316056-26316075 | Msa0846400:intron | 40.0% | |
| ATGTTAGTGGTTAGGCATCA+TGG | - | chr5_4:26316064-26316083 | Msa0846400:intron | 40.0% | |
| TAGAGATTAGGATGTTGTGC+TGG | - | chr5_4:26316511-26316530 | Msa0846400:intron | 40.0% | |
| ! | AAACCCGGCTTAGGTATTTT+GGG | - | chr5_4:26316622-26316641 | Msa0846400:intron | 40.0% |
| ATACCCAAAATACCTAAGCC+GGG | + | chr5_4:26316628-26316647 | None:intergenic | 40.0% | |
| CATACCCAAAATACCTAAGC+CGG | + | chr5_4:26316629-26316648 | None:intergenic | 40.0% | |
| AGATCTAGAGACTAATGCGT+TGG | - | chr5_4:26316722-26316741 | Msa0846400:intron | 40.0% | |
| TAGAGACTAATGCGTTGGAT+AGG | - | chr5_4:26316727-26316746 | Msa0846400:intron | 40.0% | |
| AGAGACTAATGCGTTGGATA+GGG | - | chr5_4:26316728-26316747 | Msa0846400:intron | 40.0% | |
| ! | GTATTTGAGACACCACTTAG+TGG | - | chr5_4:26316792-26316811 | Msa0846400:intron | 40.0% |
| GGACCCATGTCCAATATATT+TGG | - | chr5_4:26316910-26316929 | Msa0846400:intron | 40.0% | |
| TGTAGTCTAATGATCCCTAG+TGG | - | chr5_4:26317007-26317026 | Msa0846400:intron | 40.0% | |
| GCTGATGATATTTACTGCAC+GGG | - | chr5_4:26317104-26317123 | Msa0846400:intron | 40.0% | |
| CTGATGATATTTACTGCACG+GGG | - | chr5_4:26317105-26317124 | Msa0846400:intron | 40.0% | |
| ! | GAAGTGTTTCCTTACATCCA+CGG | - | chr5_4:26317319-26317338 | Msa0846400:intron | 40.0% |
| GAAAGTAAACCGTGGATGTA+AGG | + | chr5_4:26317331-26317350 | None:intergenic | 40.0% | |
| CTTCCATCTCTCTCTAGATT+CGG | - | chr5_4:26317390-26317409 | Msa0846400:intron | 40.0% | |
| CAATGCTTCTTGCAAAGTTG+AGG | - | chr5_4:26317456-26317475 | Msa0846400:intron | 40.0% | |
| CTTCATTCATGATCCCATTG+AGG | + | chr5_4:26317795-26317814 | None:intergenic | 40.0% | |
| CTCAATGGGATCATGAATGA+AGG | - | chr5_4:26317793-26317812 | Msa0846400:intron | 40.0% | |
| CTATGAAGAGCCATTATGGT+AGG | + | chr5_4:26317843-26317862 | None:intergenic | 40.0% | |
| CTACCATAATGGCTCTTCAT+AGG | - | chr5_4:26317841-26317860 | Msa0846400:CDS | 40.0% | |
| TGGTAGTTGAAGTAGGTACA+TGG | - | chr5_4:26317939-26317958 | Msa0846400:CDS | 40.0% | |
| GGTAGTTGAAGTAGGTACAT+GGG | - | chr5_4:26317940-26317959 | Msa0846400:CDS | 40.0% | |
| ! | ACGTCAAAAGATCTGAGACT+TGG | - | chr5_4:26318229-26318248 | Msa0846400:intron | 40.0% |
| ! | AAAAGATCTGAGACTTGGTC+AGG | - | chr5_4:26318234-26318253 | Msa0846400:intron | 40.0% |
| TATTGATGAGGGTCTGATGT+TGG | - | chr5_4:26318267-26318286 | Msa0846400:intron | 40.0% | |
| ATTGATGAGGGTCTGATGTT+GGG | - | chr5_4:26318268-26318287 | Msa0846400:intron | 40.0% | |
| GCATAATCACACTCACTTCT+GGG | - | chr5_4:26318290-26318309 | Msa0846400:intron | 40.0% | |
| GTTCGAACAATTTGCAGAGT+CGG | + | chr5_4:26318602-26318621 | None:intergenic | 40.0% | |
| TGTGATCCTATCAGAAAAGG+AGG | - | chr5_4:26318629-26318648 | Msa0846400:intron | 40.0% | |
| ! | CATTTACCTCATTGGCCTAT+TGG | + | chr5_4:26318757-26318776 | None:intergenic | 40.0% |
| GAATGAAGGACTGTAGAACT+AGG | + | chr5_4:26318833-26318852 | None:intergenic | 40.0% | |
| ! | AACCTCATTGATTGTGAGCT+TGG | - | chr5_4:26318866-26318885 | Msa0846400:intron | 40.0% |
| TACCAAGCTCACAATCAATG+AGG | + | chr5_4:26318871-26318890 | None:intergenic | 40.0% | |
| TTGGTTAACTAAGCGAGGTT+TGG | - | chr5_4:26318932-26318951 | Msa0846400:intron | 40.0% | |
| TGGTTAACTAAGCGAGGTTT+GGG | - | chr5_4:26318933-26318952 | Msa0846400:intron | 40.0% | |
| GCAAATTTGAGAGGAGTAAC+AGG | + | chr5_4:26319048-26319067 | None:intergenic | 40.0% | |
| TCAGTCAAGTGATAGAATCC+GGG | - | chr5_4:26319588-26319607 | Msa0846400:intron | 40.0% | |
| TCTCCTGAGCTCTCATAAAA+GGG | - | chr5_4:26319687-26319706 | Msa0846400:intron | 40.0% | |
| ! | ATACCCTTTTATGAGAGCTC+AGG | + | chr5_4:26319693-26319712 | None:intergenic | 40.0% |
| ATATAAGGGGATAACTGACG+CGG | + | chr5_4:26319849-26319868 | None:intergenic | 40.0% | |
| !!! | AGGTTTTAACTGCCATGTCA+CGG | - | chr5_4:26319981-26320000 | Msa0846400:intron | 40.0% |
| TGGATCCTTGCATCTTTGAT+TGG | - | chr5_4:26320022-26320041 | Msa0846400:intron | 40.0% | |
| CATGATTCGTGAGTGTGTAA+TGG | - | chr5_4:26320107-26320126 | Msa0846400:CDS | 40.0% | |
| AATCTAACGCCATAGGGAAG+GGG | - | chr5_4:26315116-26315135 | Msa0846400:three_prime_UTR | 45.0% | |
| ATCCCTCTCACAGTAACCAT+TGG | - | chr5_4:26315215-26315234 | Msa0846400:three_prime_UTR | 45.0% | |
| GATCCAATGGTTACTGTGAG+AGG | + | chr5_4:26315221-26315240 | None:intergenic | 45.0% | |
| GCTCATACCCTTCAAAGACT+TGG | + | chr5_4:26315267-26315286 | None:intergenic | 45.0% | |
| ! | AGAAGTGGAAGTGCATTTGC+GGG | + | chr5_4:26315320-26315339 | None:intergenic | 45.0% |
| ! | GAGAAGTGGAAGTGCATTTG+CGG | + | chr5_4:26315321-26315340 | None:intergenic | 45.0% |
| TCGGACACCCTTCTTATTCA+CGG | - | chr5_4:26315587-26315606 | Msa0846400:intron | 45.0% | |
| TCCATTCCGGTTAACACGTT+AGG | - | chr5_4:26315747-26315766 | Msa0846400:CDS | 45.0% | |
| CGGTTAACACGTTAGGCATA+TGG | - | chr5_4:26315754-26315773 | Msa0846400:CDS | 45.0% | |
| GTAGTGTGCAAGCCAAGAAA+TGG | - | chr5_4:26315908-26315927 | Msa0846400:intron | 45.0% | |
| TGGATGATGTGACCTCAAAG+CGG | - | chr5_4:26315928-26315947 | Msa0846400:intron | 45.0% | |
| CGGGAAGAGAAGAAGTTGTA+AGG | - | chr5_4:26315948-26315967 | Msa0846400:intron | 45.0% | |
| GAAGTTGTAAGGCTCCAACT+TGG | - | chr5_4:26315959-26315978 | Msa0846400:intron | 45.0% | |
| GATAAGCTAAGTGTGGTGTC+TGG | + | chr5_4:26316093-26316112 | None:intergenic | 45.0% | |
| ! | GAAACCCGGCTTAGGTATTT+TGG | - | chr5_4:26316621-26316640 | Msa0846400:intron | 45.0% |
| CCAAGACTTATCCCACTAAG+TGG | + | chr5_4:26316807-26316826 | None:intergenic | 45.0% | |
| CCACTTAGTGGGATAAGTCT+TGG | - | chr5_4:26316804-26316823 | Msa0846400:intron | 45.0% | |
| TGGACATGGGTCCATTTAGT+TGG | + | chr5_4:26316903-26316922 | None:intergenic | 45.0% | |
| !! | ACTTGATGACGCAGATGTTC+TGG | - | chr5_4:26317287-26317306 | Msa0846400:intron | 45.0% |
| CTTCCGAATCTAGAGAGAGA+TGG | + | chr5_4:26317396-26317415 | None:intergenic | 45.0% | |
| CTCTCTCTAGATTCGGAAGA+TGG | - | chr5_4:26317397-26317416 | Msa0846400:intron | 45.0% | |
| AACATCTCCTACTGCTGATC+AGG | - | chr5_4:26317526-26317545 | Msa0846400:intron | 45.0% | |
| !! | ACGATTTGTTGGAGACTGGA+AGG | - | chr5_4:26317558-26317577 | Msa0846400:intron | 45.0% |
| !! | CGATTTGTTGGAGACTGGAA+GGG | - | chr5_4:26317559-26317578 | Msa0846400:intron | 45.0% |
| GCTTGTGGCTTTCATGTTCT+TGG | - | chr5_4:26317660-26317679 | Msa0846400:intron | 45.0% | |
| CACCCTATGAAGAGCCATTA+TGG | + | chr5_4:26317847-26317866 | None:intergenic | 45.0% | |
| TTCTTGGAAGCAGAACCTTG+CGG | + | chr5_4:26318180-26318199 | None:intergenic | 45.0% | |
| GGCATAATCACACTCACTTC+TGG | - | chr5_4:26318289-26318308 | Msa0846400:intron | 45.0% | |
| TCAAACTCACGGTTCTGTGT+GGG | + | chr5_4:26318449-26318468 | None:intergenic | 45.0% | |
| ACACAGAACCGTGAGTTTGA+CGG | - | chr5_4:26318449-26318468 | Msa0846400:intron | 45.0% | |
| TTCAATCGCCGTCAAACTCA+CGG | + | chr5_4:26318460-26318479 | None:intergenic | 45.0% | |
| GTCAGTTTAGGCTTATCGAC+AGG | + | chr5_4:26318509-26318528 | None:intergenic | 45.0% | |
| CGATAAGCCTAAACTGACGA+TGG | - | chr5_4:26318511-26318530 | Msa0846400:intron | 45.0% | |
| ! | CGTTCACCTCCTTTTCTGAT+AGG | + | chr5_4:26318638-26318657 | None:intergenic | 45.0% |
| ATGAACCCAATAGGCCAATG+AGG | - | chr5_4:26318748-26318767 | Msa0846400:intron | 45.0% | |
| ! | TCTGGTTGGTTAACTAAGCG+AGG | - | chr5_4:26318927-26318946 | Msa0846400:intron | 45.0% |
| ! | GCACAATTGCTCGCATTTTC+AGG | - | chr5_4:26319005-26319024 | Msa0846400:intron | 45.0% |
| GAGAATAAGGCAAGCTATGC+AGG | - | chr5_4:26319139-26319158 | Msa0846400:intron | 45.0% | |
| GATTGAGACACCAAGCTCTT+CGG | + | chr5_4:26319638-26319657 | None:intergenic | 45.0% | |
| CTCTCCTGAGCTCTCATAAA+AGG | - | chr5_4:26319686-26319705 | Msa0846400:intron | 45.0% | |
| CTTTCATGGCAAAAGGAAGG+AGG | + | chr5_4:26319780-26319799 | None:intergenic | 45.0% | |
| TCTTGTCATTCTCCGTGACA+TGG | + | chr5_4:26319996-26320015 | None:intergenic | 45.0% | |
| GAGCTCCAATCAAAGATGCA+AGG | + | chr5_4:26320030-26320049 | None:intergenic | 45.0% | |
| !!! | GATGTCGTTTTGGCTGTTGC+CGG | + | chr5_4:26315145-26315164 | None:intergenic | 50.0% |
| GCCTAACGTGTTAACCGGAA+TGG | + | chr5_4:26315751-26315770 | None:intergenic | 50.0% | |
| GGATGATGTGACCTCAAAGC+GGG | - | chr5_4:26315929-26315948 | Msa0846400:intron | 50.0% | |
| CTTCTTCTCTTCCCGCTTTG+AGG | + | chr5_4:26315943-26315962 | None:intergenic | 50.0% | |
| !!! | AGGTTTTGGCTAGCCACAAG+TGG | - | chr5_4:26315987-26316006 | Msa0846400:intron | 50.0% |
| GCTGGTCACATTTCCACTTG+TGG | + | chr5_4:26316003-26316022 | None:intergenic | 50.0% | |
| GCAGCTGTCAGCAATGTTAG+TGG | - | chr5_4:26316051-26316070 | Msa0846400:intron | 50.0% | |
| ! | AAATGGTGGAAACCCGGCTT+AGG | - | chr5_4:26316613-26316632 | Msa0846400:intron | 50.0% |
| GATCCCTAGTGGCACTGTTT+CGG | - | chr5_4:26317018-26317037 | Msa0846400:intron | 50.0% | |
| ! | TGACCGAAACAGTGCCACTA+GGG | + | chr5_4:26317024-26317043 | None:intergenic | 50.0% |
| ! | ATGACCGAAACAGTGCCACT+AGG | + | chr5_4:26317025-26317044 | None:intergenic | 50.0% |
| GATTCGGAAGATGGACCTTG+AGG | - | chr5_4:26317406-26317425 | Msa0846400:intron | 50.0% | |
| AGTCTCCAACAAATCGTCCC+GGG | + | chr5_4:26317555-26317574 | None:intergenic | 50.0% | |
| CAGTCTCCAACAAATCGTCC+CGG | + | chr5_4:26317556-26317575 | None:intergenic | 50.0% | |
| TTTGTTGGAGACTGGAAGGG+CGG | - | chr5_4:26317562-26317581 | Msa0846400:intron | 50.0% | |
| GTCTTACAGAGCTCCAGAGA+AGG | - | chr5_4:26317688-26317707 | Msa0846400:intron | 50.0% | |
| TCTTGGAAGCAGAACCTTGC+GGG | + | chr5_4:26318179-26318198 | None:intergenic | 50.0% | |
| GTCAAACTCACGGTTCTGTG+TGG | + | chr5_4:26318450-26318469 | None:intergenic | 50.0% | |
| CCTCGTTGGAACTTGGAACT+GGG | + | chr5_4:26318806-26318825 | None:intergenic | 50.0% | |
| CCAGTTCCAAGTTCCAACGA+GGG | - | chr5_4:26318804-26318823 | Msa0846400:intron | 50.0% | |
| CAGTTCCAAGTTCCAACGAG+GGG | - | chr5_4:26318805-26318824 | Msa0846400:intron | 50.0% | |
| TAGAACTAGGTTCCCCTCGT+TGG | + | chr5_4:26318820-26318839 | None:intergenic | 50.0% | |
| GTTGCTGGTGTAAATCCTGG+AGG | + | chr5_4:26319660-26319679 | None:intergenic | 50.0% | |
| TTCTCTGCCTTGCAGCTTCA+TGG | - | chr5_4:26319929-26319948 | Msa0846400:intron | 50.0% | |
| TCTCTGCCTTGCAGCTTCAT+GGG | - | chr5_4:26319930-26319949 | Msa0846400:intron | 50.0% | |
| ATCTACCCCATGAAGCTGCA+AGG | + | chr5_4:26319939-26319958 | None:intergenic | 50.0% | |
| GCTGCAGACTTCTTGCCTCA+AGG | + | chr5_4:26317424-26317443 | None:intergenic | 55.0% | |
| !! | CGGGACGATTTGTTGGAGAC+TGG | - | chr5_4:26317554-26317573 | Msa0846400:intron | 55.0% |
| ACAAGCTTCTTGCTCCCGCA+AGG | - | chr5_4:26318162-26318181 | Msa0846400:intron | 55.0% | |
| CCCAGTTCCAAGTTCCAACG+AGG | - | chr5_4:26318803-26318822 | Msa0846400:intron | 55.0% | |
| CCCTCGTTGGAACTTGGAAC+TGG | + | chr5_4:26318807-26318826 | None:intergenic | 55.0% | |
| AGGTTCCCCTCGTTGGAACT+TGG | + | chr5_4:26318813-26318832 | None:intergenic | 55.0% | |
| AAGCTCTTCGGTCTCCAGCA+CGG | + | chr5_4:26319626-26319645 | None:intergenic | 55.0% | |
| !! | GCTTGGTGTCTCAATCCTCC+AGG | - | chr5_4:26319642-26319661 | Msa0846400:intron | 55.0% |
| CGCGTTGCTGGTGTAAATCC+TGG | + | chr5_4:26319663-26319682 | None:intergenic | 55.0% | |
| CTCTGCCTTGCAGCTTCATG+GGG | - | chr5_4:26319931-26319950 | Msa0846400:intron | 55.0% | |
| CGCCATAGGGAAGGGGTAAC+CGG | - | chr5_4:26315123-26315142 | Msa0846400:three_prime_UTR | 60.0% | |
| ! | TGCCGGTTACCCCTTCCCTA+TGG | + | chr5_4:26315128-26315147 | None:intergenic | 60.0% |
| CTACTGCTGATCAGGCTGCC+CGG | - | chr5_4:26317534-26317553 | Msa0846400:intron | 60.0% | |
| TACTGCTGATCAGGCTGCCC+GGG | - | chr5_4:26317535-26317554 | Msa0846400:intron | 60.0% | |
| TGGAAGGGCGGACACGCATT+TGG | - | chr5_4:26317574-26317593 | Msa0846400:intron | 60.0% | |
| GTGCTGGAGACCGAAGAGCT+TGG | - | chr5_4:26319625-26319644 | Msa0846400:intron | 60.0% | |
| TCAGGAGAGTCTCGCGTTGC+TGG | + | chr5_4:26319675-26319694 | None:intergenic | 60.0% | |
| CGGGCAGCCTGATCAGCAGT+AGG | + | chr5_4:26317536-26317555 | None:intergenic | 65.0% | |
| GGCTGCCCGGGACGATTTGT+TGG | - | chr5_4:26317547-26317566 | Msa0846400:intron | 65.0% | |
| GCACGGTTCTGTGGCTCTCC+CGG | + | chr5_4:26319609-26319628 | None:intergenic | 65.0% | |
| GGAGAGCCACAGAACCGTGC+TGG | - | chr5_4:26319609-26319628 | Msa0846400:intron | 65.0% | |
| CGGTCTCCAGCACGGTTCTG+TGG | + | chr5_4:26319618-26319637 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 26315112 | 26320277 | 26315112 | ID=Msa0846400;Name=Msa0846400 |
| chr5_4 | mRNA | 26315112 | 26320277 | 26315112 | ID=Msa0846400-mRNA-1;Parent=Msa0846400;Name=Msa0846400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=111|1|1|1|0.8|0.66|6|181|222 |
| chr5_4 | exon | 26315112 | 26315445 | 26315112 | ID=Msa0846400-mRNA-1:exon:10356;Parent=Msa0846400-mRNA-1 |
| chr5_4 | exon | 26315681 | 26315851 | 26315681 | ID=Msa0846400-mRNA-1:exon:10355;Parent=Msa0846400-mRNA-1 |
| chr5_4 | exon | 26317794 | 26317982 | 26317794 | ID=Msa0846400-mRNA-1:exon:10354;Parent=Msa0846400-mRNA-1 |
| chr5_4 | exon | 26318081 | 26318139 | 26318081 | ID=Msa0846400-mRNA-1:exon:10353;Parent=Msa0846400-mRNA-1 |
| chr5_4 | exon | 26320034 | 26320161 | 26320034 | ID=Msa0846400-mRNA-1:exon:10352;Parent=Msa0846400-mRNA-1 |
| chr5_4 | exon | 26320198 | 26320277 | 26320198 | ID=Msa0846400-mRNA-1:exon:10351;Parent=Msa0846400-mRNA-1 |
| chr5_4 | five_prime_UTR | 26320198 | 26320277 | 26320198 | ID=Msa0846400-mRNA-1:five_prime_utr;Parent=Msa0846400-mRNA-1 |
| chr5_4 | five_prime_UTR | 26320131 | 26320161 | 26320131 | ID=Msa0846400-mRNA-1:five_prime_utr;Parent=Msa0846400-mRNA-1 |
| chr5_4 | CDS | 26320034 | 26320130 | 26320034 | ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1 |
| chr5_4 | CDS | 26318081 | 26318139 | 26318081 | ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1 |
| chr5_4 | CDS | 26317794 | 26317982 | 26317794 | ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1 |
| chr5_4 | CDS | 26315681 | 26315851 | 26315681 | ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1 |
| chr5_4 | CDS | 26315293 | 26315445 | 26315293 | ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1 |
| chr5_4 | three_prime_UTR | 26315112 | 26315292 | 26315112 | ID=Msa0846400-mRNA-1:three_prime_utr;Parent=Msa0846400-mRNA-1 |
| Gene Sequence |
| Protein sequence |
