AlfalfaGEDB | Msa0846400

M. sativa cultivar zhongmu-4 / Msa0846400

KEGG: K08493
GO: GO:0003674 GO:0005483 GO:0005484 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005768 GO:0005770 GO:0005783 GO:0005789 GO:0005794 GO:0005798 GO:0005802 GO:0005886 GO:0006605 GO:0006623 GO:0006810 GO:0006886 GO:0006888 GO:0006892 GO:0006896 GO:0006906 GO:0006996 GO:0007034 GO:0008104 GO:0008150 GO:0009987 GO:0010008 GO:0012505 GO:0012506 GO:0012507 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016050 GO:0016192 GO:0016197 GO:0016482 GO:0030133 GO:0030134 GO:0030135 GO:0030658 GO:0030659 GO:0030660 GO:0030662 GO:0031090 GO:0031201 GO:0031410 GO:0031902 GO:0031982 GO:0031984 GO:0032991 GO:0033036 GO:0033365 GO:0034613 GO:0042147 GO:0042175 GO:0042886 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044431 GO:0044432 GO:0044433 GO:0044440 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0046907 GO:0048193 GO:0048280 GO:0048284 GO:0051179 GO:0051234 GO:0051641 GO:0051649 GO:0061024 GO:0061025 GO:0070727 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0072594 GO:0072665 GO:0072666 GO:0090174 GO:0097708 GO:0098588 GO:0098791 GO:0098796 GO:0098805 GO:0098827
PFAM: PF05008.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846400	XP_003613912.1	99.099	222	2	0	1	222	1	222	1.97e-157	444

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846400	sp\|Q9SEL5\|VTI12_ARATH	71.622	222	63	0	1	222	1	222	1.21e-114	329

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846400	G7JWJ8	99.099	222	2	0	1	222	1	222	9.39e-158	444

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0008840	Msa0846400	0.809323	2.002865e-50	-8.615850e-47
Msa0014830	Msa0846400	0.802117	6.533167e-49	-8.615850e-47
Msa0033880	Msa0846400	0.810469	1.134800e-50	-8.615850e-47
Msa0057750	Msa0846400	0.809803	1.579253e-50	-8.615850e-47
Msa0077540	Msa0846400	0.807742	4.356528e-50	-8.615850e-47
Msa0103070	Msa0846400	0.811392	7.163078e-51	-8.615850e-47
Msa0127850	Msa0846400	0.811546	6.634024e-51	-8.615850e-47
Msa0174000	Msa0846400	0.812891	3.373887e-51	-8.615850e-47
Msa0439890	Msa0846400	0.804012	2.650174e-49	-8.615850e-47
Msa0462880	Msa0846400	0.809935	1.479745e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846400	MtrunA17_Chr5g0418041	99.099	222	2	0	1	222	1	222	1.81e-161	444
Msa0846400	MtrunA17_Chr3g0091631	67.568	222	71	1	1	222	64	284	2.28e-106	308
Msa0846400	MtrunA17_Chr6g0453631	62.727	220	81	1	1	220	1	219	8.27e-103	296
Msa0846400	MtrunA17_Chr7g0217961	60.633	221	86	1	1	221	1	220	1.26e-95	278

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0846400	AT1G26670.1	71.622	222	63	0	1	222	1	222	1.23e-115	329
Msa0846400	AT3G29100.3	61.086	221	85	1	1	221	1	220	7.10e-97	281
Msa0846400	AT5G39510.1	63.348	221	80	1	1	221	1	220	1.27e-90	266
Msa0846400	AT3G29100.1	60.947	169	66	0	53	221	26	194	1.89e-72	219
Msa0846400	AT3G29100.2	61.446	166	64	0	56	221	1	166	2.40e-71	215
Msa0846400	AT3G29100.4	61.446	166	64	0	56	221	1	166	2.40e-71	215
Msa0846400	AT3G29100.5	61.446	166	64	0	56	221	1	166	2.40e-71	215
Msa0846400	AT5G39630.1	38.967	213	123	3	1	213	1	206	4.74e-41	139

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Find 64 sgRNAs with CRISPR-Local

Find 313 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCTAACGCCATAGGGA+AGG	0.549539	5_4:-26320253	Msa0846400:five_prime_UTR
AAATCTAACGCCATAGGGAA+GGG	0.538443	5_4:-26320252	Msa0846400:five_prime_UTR
AACATCTCCTACTGCTGATC+AGG	0.405665	5_4:-26317841	Msa0846400:CDS
AAGATGAGCCAAGTCTTTGA+AGG	0.525620	5_4:-26320111	Msa0846400:CDS
AAGCTCTTCGGTCTCCAGCA+CGG	0.606997	5_4:+26315744	None:intergenic
AATATGACAAACATCCTATG+TGG	0.619963	5_4:+26315198	None:intergenic
AATCTAACGCCATAGGGAAG+GGG	0.579857	5_4:-26320251	Msa0846400:five_prime_UTR
AATGCTTCTTGCAAAGTTGA+GGG	0.499099	5_4:-26317910	Msa0846400:CDS
ACGATTTGTTGGAGACTGGA+AGG	0.558334	5_4:-26317809	Msa0846400:CDS
ACTTCTCTTCTTTCTGATCA+AGG	0.423541	5_4:-26320033	Msa0846400:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TTAACAACCGTGAATAAGAA+GGG	+	chr5_4:26315597-26315616	None:intergenic	30.0%
ATTTAGGTGTCAGTTGAAAT+CGG	-	chr5_4:26315629-26315648	Msa0846400:intron	30.0%
AACACAATCAGCTGAAATAA+AGG	-	chr5_4:26316307-26316326	Msa0846400:intron	30.0%
AAACAAGTGTAGTAGAGATT+AGG	-	chr5_4:26316499-26316518	Msa0846400:intron	30.0%
TGTTATGACTAGACATGATA+GGG	-	chr5_4:26316539-26316558	Msa0846400:intron	30.0%
AGCACCTATCATAGAAAAAA+TGG	-	chr5_4:26316596-26316615	Msa0846400:intron	30.0%
ACCTATCATAGAAAAAATGG+TGG	-	chr5_4:26316599-26316618	Msa0846400:intron	30.0%
CTCCTTATTACAAAATCTAC+AGG	+	chr5_4:26316663-26316682	None:intergenic	30.0%
CAAAATATATTGAGAGAGCA+CGG	-	chr5_4:26316860-26316879	Msa0846400:intron	30.0%
CAATTAGCATACCAACTAAA+TGG	-	chr5_4:26316889-26316908	Msa0846400:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_4	gene	26315112	26320277	26315112	ID=Msa0846400;Name=Msa0846400
chr5_4	mRNA	26315112	26320277	26315112	ID=Msa0846400-mRNA-1;Parent=Msa0846400;Name=Msa0846400-mRNA-1;_AED=0.08;_eAED=0.08;_QI=111\|1\|1\|1\|0.8\|0.66\|6\|181\|222
chr5_4	exon	26315112	26315445	26315112	ID=Msa0846400-mRNA-1:exon:10356;Parent=Msa0846400-mRNA-1
chr5_4	exon	26315681	26315851	26315681	ID=Msa0846400-mRNA-1:exon:10355;Parent=Msa0846400-mRNA-1
chr5_4	exon	26317794	26317982	26317794	ID=Msa0846400-mRNA-1:exon:10354;Parent=Msa0846400-mRNA-1
chr5_4	exon	26318081	26318139	26318081	ID=Msa0846400-mRNA-1:exon:10353;Parent=Msa0846400-mRNA-1
chr5_4	exon	26320034	26320161	26320034	ID=Msa0846400-mRNA-1:exon:10352;Parent=Msa0846400-mRNA-1
chr5_4	exon	26320198	26320277	26320198	ID=Msa0846400-mRNA-1:exon:10351;Parent=Msa0846400-mRNA-1
chr5_4	five_prime_UTR	26320198	26320277	26320198	ID=Msa0846400-mRNA-1:five_prime_utr;Parent=Msa0846400-mRNA-1
chr5_4	five_prime_UTR	26320131	26320161	26320131	ID=Msa0846400-mRNA-1:five_prime_utr;Parent=Msa0846400-mRNA-1
chr5_4	CDS	26320034	26320130	26320034	ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1
chr5_4	CDS	26318081	26318139	26318081	ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1
chr5_4	CDS	26317794	26317982	26317794	ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1
chr5_4	CDS	26315681	26315851	26315681	ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1
chr5_4	CDS	26315293	26315445	26315293	ID=Msa0846400-mRNA-1:cds;Parent=Msa0846400-mRNA-1
chr5_4	three_prime_UTR	26315112	26315292	26315112	ID=Msa0846400-mRNA-1:three_prime_utr;Parent=Msa0846400-mRNA-1

Gene Sequence

>Msa0846400

ATGAGCCAAGTCTTTGAAGGGTATGAGCGTCAATACTGCGATCTCTCTGCTAATCTCTCCCGCAAATGCACTTCCACTTCTCTTCTTTCTGATCAAGAAGAGAAGCTGCAAAAGTTTTCTGAGATCAAAACTGGACTTGATGACGCAGATGTTCTGATTCGGAAGATGGACCTTGAGGCAAGAAGTCTGCAGCCAAGTGTAAAAGCAATGCTTCTTGCAAAGTTGAGGGAATACAAATCCGATCTAAACAACTTGAAAAAAGAATTTAAAAGGTTAACATCTCCTACTGCTGATCAGGCTGCCCGGGACGATTTGTTGGAGACTGGAAGGGCGGACACGCATTTGGCATCTACTGATCAGAGAGAAAGATTAACTATGTCAGTGGAGAGATTAAATCAGTCAAGTGATAGAATCCGGGAGAGCCACAGAACCGTGCTGGAGACCGAAGAGCTTGGTGTCTCAATCCTCCAGGATTTACACCAGCAACGCGAGACTCTCCTGAGCTCTCATAAAAGGCTTCATGGGGTAGATAGTGCTATTGACAAGAGTAAGAAGGTTTTAACTGCCATGTCACGGAGAATGACAAGAAACAAATGGATCCTTGCATCTTTGATTGGAGCTCTTATTTTTGCAATAGTTATTATTCTATTTTACAAACTATCTCATTAG

Protein sequence

>Msa0846400

MSQVFEGYERQYCDLSANLSRKCTSTSLLSDQEEKLQKFSEIKTGLDDADVLIRKMDLEARSLQPSVKAMLLAKLREYKSDLNNLKKEFKRLTSPTADQAARDDLLETGRADTHLASTDQRERLTMSVERLNQSSDRIRESHRTVLETEELGVSILQDLHQQRETLLSSHKRLHGVDSAIDKSKKVLTAMSRRMTRNKWILASLIGALIFAIVIILFYKLSH*