AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0008840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008840 MtrunA17_Chr1g0146471 99.167 120 1 0 1 120 1 120 1.05e-85 245
Msa0008840 MtrunA17_Chr3g0140601 68.376 117 35 2 1 115 1 117 2.53e-54 166
Msa0008840 MtrunA17_Chr4g0063331 58.750 80 33 0 26 105 21 100 8.31e-25 90.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0008840 AT5G25940.1 68.041 97 29 1 14 108 12 108 3.74e-29 102

Find 48 sgRNAs with CRISPR-Local

Find 411 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ACCTGTACGACTTTGCTTTC+TGG 0.091728 1_1:-12814448 Msa0008840:three_prime_UTR
CATCTCAACTTTGGTGTTCT+TGG 0.192946 1_1:-12814242 Msa0008840:three_prime_UTR
TGTTGTGTAACAGTTATATT+TGG 0.201564 1_1:-12814373 Msa0008840:three_prime_UTR
CCTGTACGACTTTGCTTTCT+GGG 0.225724 1_1:-12814447 Msa0008840:three_prime_UTR
GGAGAAAACAAAATTGAATT+TGG 0.233532 1_1:+12819183 None:intergenic
AATAATAAATGAATTTCTTT+TGG 0.261264 1_1:+12819016 None:intergenic
TGGAATTGCGGTGACGATAT+TGG 0.338526 1_1:+12819288 None:intergenic
TGCGGTGACGATATTGGTTT+GGG 0.339692 1_1:+12819294 None:intergenic
GAAGCTGCTTTACTCGTTGC+TGG 0.345829 1_1:-12814505 Msa0008840:three_prime_UTR
TTGCGGTGACGATATTGGTT+TGG 0.346040 1_1:+12819293 None:intergenic
GCTTTACTCGTTGCTGGTCT+TGG 0.353662 1_1:-12814499 Msa0008840:three_prime_UTR
GTAAGTAGCGGGTAATATAA+TGG 0.366704 1_1:+12819127 None:intergenic
CACTGCTGATAAAACTATCT+TGG 0.370507 1_1:-12814595 Msa0008840:CDS
AAAGCCACTCCACTAATTAC+TGG 0.374663 1_1:+12814340 None:intergenic
TTCAGAACTTAGAGATGCTT+GGG 0.386088 1_1:-12819042 Msa0008840:CDS
CTTCAGAACTTAGAGATGCT+TGG 0.415026 1_1:-12819043 Msa0008840:CDS
CTCAACTTTGGTGTTCTTGG+TGG 0.421981 1_1:-12814239 Msa0008840:three_prime_UTR
TTTCTATCACATCTCAACTT+TGG 0.432124 1_1:-12814251 Msa0008840:three_prime_UTR
TAAGTAGCGGGTAATATAAT+GGG 0.441398 1_1:+12819128 None:intergenic
CTGCTGTTCGCATGATTCCA+TGG 0.443299 1_1:-12815222 Msa0008840:CDS
AAAATCTTCCTCTCTTCATC+AGG 0.443350 1_1:+12818987 None:intergenic
GTGATAGAAAATTAAACAAA+TGG 0.469427 1_1:+12814264 None:intergenic
AGGTGTGCGTGCTGGATTCA+AGG 0.476456 1_1:-12816048 Msa0008840:CDS
AGTGGAGTGGCTTTATAAAG+AGG 0.480251 1_1:-12814331 Msa0008840:three_prime_UTR
TGCTTTCTGGGTCTGTCTCG+TGG 0.485290 1_1:-12814435 Msa0008840:three_prime_UTR
CCCAGAAAGCAAAGTCGTAC+AGG 0.489539 1_1:+12814447 None:intergenic
TTGAGGTTTGCCTTTGCCCA+TGG 0.506394 1_1:+12815205 None:intergenic
ATTGCTACTCCAGTAATTAG+TGG 0.516108 1_1:-12814349 Msa0008840:three_prime_UTR
CAAGCATCTCTAAGTTCTGA+AGG 0.519720 1_1:+12819044 None:intergenic
GTGCCTGAGCGGTATAATTG+AGG 0.519973 1_1:+12815188 None:intergenic
GAATGATTGAAGGTATCAAT+CGG 0.523943 1_1:+12819215 None:intergenic
AAGCTTTATTCGTAAGTAGC+GGG 0.528498 1_1:+12819116 None:intergenic
GTGTGAAAATGAATGATTGA+AGG 0.529823 1_1:+12819205 None:intergenic
TATGCAGAAGGTGTGCGTGC+TGG 0.548386 1_1:-12816056 Msa0008840:intron
TGCTGTTCGCATGATTCCAT+GGG 0.558562 1_1:-12815221 Msa0008840:CDS
CAGGCACTTATCATATCTGC+TGG 0.561453 1_1:-12815172 Msa0008840:intron
AAACCTCAATTATACCGCTC+AGG 0.563012 1_1:-12815191 Msa0008840:CDS
TACTCCAGTAATTAGTGGAG+TGG 0.607183 1_1:-12814344 Msa0008840:three_prime_UTR
TTGCTTCTCCTGATGAAGAG+AGG 0.611181 1_1:-12818995 Msa0008840:CDS
TCGCATGATTCCATGGGCAA+AGG 0.613193 1_1:-12815215 Msa0008840:CDS
TTTCTATTAGCCGACAACGA+TGG 0.623542 1_1:+12819162 None:intergenic
GAAGCTTTATTCGTAAGTAG+CGG 0.628755 1_1:+12819115 None:intergenic
AGTACTGACAACGCATGCAA+CGG 0.637303 1_1:+12816019 None:intergenic
TCTGAGACACCATCGTGACA+CGG 0.644860 1_1:-12814538 Msa0008840:CDS
ACTGACAACGCATGCAACGG+CGG 0.656885 1_1:+12816022 None:intergenic
TGATTGAAGGTATCAATCGG+TGG 0.672127 1_1:+12819218 None:intergenic
AGATATGATAAGTGCCTGAG+CGG 0.693268 1_1:+12815177 None:intergenic
AAGATGAAACCGTGTCACGA+TGG 0.695013 1_1:+12814529 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATAATAAATGAATTTCTTT+TGG + chr1_1:12814518-12814537 None:intergenic 10.0%
!!! TTAAAATGTTATTTATTATG+TGG - chr1_1:12814659-12814678 Msa0008840:intron 10.0%
!!! TAAAATGTTATTTATTATGT+GGG - chr1_1:12814660-12814679 Msa0008840:intron 10.0%
!!! TTTAATTTTATTTGATGTTA+AGG - chr1_1:12818266-12818285 Msa0008840:intron 10.0%
!! AATATAAATTAAAGTACAAA+AGG + chr1_1:12818773-12818792 None:intergenic 10.0%
!!! ATTTTTTGAAAGAAAAAAAA+GGG + chr1_1:12818816-12818835 None:intergenic 10.0%
!!! TATTTTTTGAAAGAAAAAAA+AGG + chr1_1:12818817-12818836 None:intergenic 10.0%
!! ACAATAACAAAAAGAAAAAA+TGG - chr1_1:12814459-12814478 Msa0008840:three_prime_UTR 15.0%
!! CAATAACAAAAAGAAAAAAT+GGG - chr1_1:12814460-12814479 Msa0008840:three_prime_UTR 15.0%
!!! AATTTATTAGTTGATGATTA+TGG - chr1_1:12814725-12814744 Msa0008840:intron 15.0%
!! AAATCAATGTTAAACTTTAT+TGG - chr1_1:12815253-12815272 Msa0008840:intron 15.0%
!!! TTATCTTTTTACTTTAGTTT+TGG + chr1_1:12816264-12816283 None:intergenic 15.0%
!! AAAACTAAAGTAAAAAGATA+AGG - chr1_1:12816263-12816282 Msa0008840:intron 15.0%
!! ATTGATAAAAATGAAAATCT+AGG + chr1_1:12817342-12817361 None:intergenic 15.0%
!!! TCTTAATCATACTTTTAATT+GGG + chr1_1:12818156-12818175 None:intergenic 15.0%
!!! TTCTTAATCATACTTTTAAT+TGG + chr1_1:12818157-12818176 None:intergenic 15.0%
!! ATAAAATTAAAACTCATGAA+GGG + chr1_1:12818257-12818276 None:intergenic 15.0%
!! AATAAAATTAAAACTCATGA+AGG + chr1_1:12818258-12818277 None:intergenic 15.0%
!!! AGAAAAATAAATCTTTTGAA+TGG - chr1_1:12818450-12818469 Msa0008840:intron 15.0%
!!! AGAAAGTTAAGATTTTAATT+TGG + chr1_1:12818628-12818647 None:intergenic 15.0%
!!! AATACCATTAGTACATTTTT+TGG + chr1_1:12814575-12814594 None:intergenic 20.0%
!!! AATTTTTTTGGTTAGGATTT+GGG - chr1_1:12814979-12814998 Msa0008840:intron 20.0%
!!! ATTTTCTCAAATTATTGCTA+TGG - chr1_1:12817241-12817260 Msa0008840:intron 20.0%
!! CAGAAATAAAGACAATTATT+TGG + chr1_1:12817316-12817335 None:intergenic 20.0%
!! AAAGAAAAATTACTTACTGT+TGG + chr1_1:12817541-12817560 None:intergenic 20.0%
!!! TTTAAGACATTGGTTTTTTA+CGG - chr1_1:12817745-12817764 Msa0008840:intron 20.0%
!! TTATTGTTGAAAATAACACT+GGG - chr1_1:12818220-12818239 Msa0008840:intron 20.0%
!! TAAAATTAAAACTCATGAAG+GGG + chr1_1:12818256-12818275 None:intergenic 20.0%
!! GTGATAGAAAATTAAACAAA+TGG + chr1_1:12819270-12819289 None:intergenic 20.0%
!!! TTTTATTCTTCGTTCAAGTT+TGG + chr1_1:12814281-12814300 None:intergenic 25.0%
! GGAGAAAACAAAATTGAATT+TGG + chr1_1:12814351-12814370 None:intergenic 25.0%
! AGAACCAAAAAATGTACTAA+TGG - chr1_1:12814568-12814587 Msa0008840:CDS 25.0%
!! TTAGTTGATTAATTGGTTCT+TGG + chr1_1:12814797-12814816 None:intergenic 25.0%
! ACCAATTAATCAACTAATCT+AGG - chr1_1:12814800-12814819 Msa0008840:intron 25.0%
! CCAATTAATCAACTAATCTA+GGG - chr1_1:12814801-12814820 Msa0008840:intron 25.0%
! ACCAAAAAAATTCAGAATGT+TGG + chr1_1:12814971-12814990 None:intergenic 25.0%
!!! CATTCTGAATTTTTTTGGTT+AGG - chr1_1:12814972-12814991 Msa0008840:intron 25.0%
!!! GAATTTTTTTGGTTAGGATT+TGG - chr1_1:12814978-12814997 Msa0008840:intron 25.0%
!!! CATTGTTTTTCTTCGAATTT+GGG + chr1_1:12815138-12815157 None:intergenic 25.0%
!! TTCAAGAATTATTTTCCAAC+AGG + chr1_1:12815191-12815210 None:intergenic 25.0%
! GTTGGAAAATAATTCTTGAA+TGG - chr1_1:12815191-12815210 Msa0008840:CDS 25.0%
! AACCATTAGAAAAGATTTAG+AGG + chr1_1:12815520-12815539 None:intergenic 25.0%
!! GTTTCTCTAATAGTTTTCTT+AGG - chr1_1:12815537-12815556 Msa0008840:intron 25.0%
!!! TAGAAAAGTTGGTAGAAAAT+AGG + chr1_1:12815662-12815681 None:intergenic 25.0%
! AAGTAAAAAGATAAGGACTT+AGG - chr1_1:12816270-12816289 Msa0008840:intron 25.0%
! AGTAAAAAGATAAGGACTTA+GGG - chr1_1:12816271-12816290 Msa0008840:intron 25.0%
! ATTCCAATCTATAAGAACAA+GGG + chr1_1:12816708-12816727 None:intergenic 25.0%
! AATTCCAATCTATAAGAACA+AGG + chr1_1:12816709-12816728 None:intergenic 25.0%
! GTTCTTATAGATTGGAATTA+AGG - chr1_1:12816710-12816729 Msa0008840:intron 25.0%
! GAAACTATAACTATTATCGT+CGG + chr1_1:12816917-12816936 None:intergenic 25.0%
! GACGATAATAGTTATAGTTT+CGG - chr1_1:12816916-12816935 Msa0008840:intron 25.0%
! ATCCTTCATTAAATAAGTTG+TGG - chr1_1:12816985-12817004 Msa0008840:intron 25.0%
! TTCCACAACTTATTTAATGA+AGG + chr1_1:12816990-12817009 None:intergenic 25.0%
!!! TTCATTTTTATCAATAGAGC+AGG - chr1_1:12817347-12817366 Msa0008840:intron 25.0%
! TAACAATGTTAGATAACATG+TGG + chr1_1:12817380-12817399 None:intergenic 25.0%
! TTCATATTTCTCATGATATC+AGG + chr1_1:12817423-12817442 None:intergenic 25.0%
!! CAGTAAGTAATTTTTCTTTC+CGG - chr1_1:12817542-12817561 Msa0008840:intron 25.0%
!!! TTAAGACATTGGTTTTTTAC+GGG - chr1_1:12817746-12817765 Msa0008840:intron 25.0%
! CTTAAAAAACATGTAACAAG+AGG + chr1_1:12817812-12817831 None:intergenic 25.0%
!!! TGTTACATGTTTTTTAAGAG+TGG - chr1_1:12817814-12817833 Msa0008840:intron 25.0%
! GATGTTCAATCTTATAAGAT+CGG + chr1_1:12818070-12818089 None:intergenic 25.0%
! GTTATTGTTGAAAATAACAC+TGG - chr1_1:12818219-12818238 Msa0008840:intron 25.0%
! TTTGAATGGTAATTTAAGCA+TGG - chr1_1:12818464-12818483 Msa0008840:intron 25.0%
!!! ATAAGAATTTGTTAATGTGC+TGG + chr1_1:12818535-12818554 None:intergenic 25.0%
! AATTCATTGAAGTATGAATG+TGG - chr1_1:12818578-12818597 Msa0008840:intron 25.0%
!!! GTTAAGATTTTAATTTGGAG+TGG + chr1_1:12818623-12818642 None:intergenic 25.0%
! TTTGAATGCATTATTTACAC+TGG - chr1_1:12818873-12818892 Msa0008840:intron 25.0%
! TGTTGTGTAACAGTTATATT+TGG - chr1_1:12819158-12819177 Msa0008840:five_prime_UTR 25.0%
!! GAATGATTGAAGGTATCAAT+CGG + chr1_1:12814319-12814338 None:intergenic 30.0%
GTGTGAAAATGAATGATTGA+AGG + chr1_1:12814329-12814348 None:intergenic 30.0%
!! TAAGTAGCGGGTAATATAAT+GGG + chr1_1:12814406-12814425 None:intergenic 30.0%
!! TAGTTGATGATTATGGTTAG+AGG - chr1_1:12814732-12814751 Msa0008840:intron 30.0%
!! TTATGGTTAGAGGTATTTGT+TGG - chr1_1:12814742-12814761 Msa0008840:intron 30.0%
!!! GGTTGATGATTTTTTCTGTT+CGG - chr1_1:12814763-12814782 Msa0008840:intron 30.0%
!!! GATTTTTTCTGTTCGGTATT+CGG - chr1_1:12814770-12814789 Msa0008840:intron 30.0%
! CCCTAGATTAGTTGATTAAT+TGG + chr1_1:12814804-12814823 None:intergenic 30.0%
!!! GCCAACATTCTGAATTTTTT+TGG - chr1_1:12814967-12814986 Msa0008840:intron 30.0%
!! CCATTGTTTTTCTTCGAATT+TGG + chr1_1:12815139-12815158 None:intergenic 30.0%
CCAAATTCGAAGAAAAACAA+TGG - chr1_1:12815136-12815155 Msa0008840:intron 30.0%
! ATTTTCCAACAGGAACAAAA+GGG + chr1_1:12815181-12815200 None:intergenic 30.0%
! TATTTTCCAACAGGAACAAA+AGG + chr1_1:12815182-12815201 None:intergenic 30.0%
!! TATTTTACTTTTCCGCTGTT+TGG - chr1_1:12815228-12815247 Msa0008840:CDS 30.0%
!! AACTTTATTGGACTAGCTTA+AGG - chr1_1:12815265-12815284 Msa0008840:intron 30.0%
TCTTTGATAGAACATTATGG+CGG + chr1_1:12815473-12815492 None:intergenic 30.0%
TGGTCTTTGATAGAACATTA+TGG + chr1_1:12815476-12815495 None:intergenic 30.0%
GTTCTATCAAAGACCATATT+TGG - chr1_1:12815480-12815499 Msa0008840:intron 30.0%
! GACCTCTAAATCTTTTCTAA+TGG - chr1_1:12815515-12815534 Msa0008840:intron 30.0%
! TCTACCAACTTTTCTACTAT+AGG - chr1_1:12815666-12815685 Msa0008840:intron 30.0%
TTACACGGTTTAGATATCTT+GGG + chr1_1:12815998-12816017 None:intergenic 30.0%
ATATCTAAACCGTGTAACTT+GGG - chr1_1:12816001-12816020 Msa0008840:intron 30.0%
TGGAATGTAACTTCAGTAAA+AGG + chr1_1:12816073-12816092 None:intergenic 30.0%
TAGAAACAAGACGGAATATA+TGG + chr1_1:12816093-12816112 None:intergenic 30.0%
!!! TTTAGTTTTGGATGTACTGA+CGG + chr1_1:12816252-12816271 None:intergenic 30.0%
TATTGTTATGGGAAAATCTC+CGG - chr1_1:12816313-12816332 Msa0008840:intron 30.0%
!!! AGTTTTCATTGATTTGGAGA+AGG + chr1_1:12816472-12816491 None:intergenic 30.0%
!! GCACTTAGTTTTCATTGATT+TGG + chr1_1:12816478-12816497 None:intergenic 30.0%
TTCCAATCTATAAGAACAAG+GGG + chr1_1:12816707-12816726 None:intergenic 30.0%
! AACTTTTCAACGAGATTATG+AGG + chr1_1:12816770-12816789 None:intergenic 30.0%
AGAGAGATATTAAGGATAGA+TGG + chr1_1:12817022-12817041 None:intergenic 30.0%
AAGTGTATTAAGGATGAAGA+GGG + chr1_1:12817062-12817081 None:intergenic 30.0%
GAAGGATTATACCAATCTTT+AGG + chr1_1:12817161-12817180 None:intergenic 30.0%
TTGTTATGATATGCTGTCAA+AGG - chr1_1:12817394-12817413 Msa0008840:intron 30.0%
TGTTATGATATGCTGTCAAA+GGG - chr1_1:12817395-12817414 Msa0008840:intron 30.0%
TATCTTTATTAGCAAGTCTC+CGG + chr1_1:12817564-12817583 None:intergenic 30.0%
AACAATGTTATGCAGTTTCA+TGG - chr1_1:12817628-12817647 Msa0008840:intron 30.0%
CAATAAGCAGAAGAAATACA+TGG + chr1_1:12817680-12817699 None:intergenic 30.0%
CATGTATTTCTTCTGCTTAT+TGG - chr1_1:12817678-12817697 Msa0008840:intron 30.0%
TGTGAAATTGACCAATCATA+TGG - chr1_1:12817882-12817901 Msa0008840:intron 30.0%
!! CTTGGTCTTATTAAAGAACA+AGG + chr1_1:12818010-12818029 None:intergenic 30.0%
GTAAAATAGTGATAGGAACT+TGG + chr1_1:12818028-12818047 None:intergenic 30.0%
TCTTATAAGATTGAACATCC+TGG - chr1_1:12818071-12818090 Msa0008840:intron 30.0%
GAAGCAAGAAACAATAAATC+AGG - chr1_1:12818506-12818525 Msa0008840:intron 30.0%
!! AGTTTTCTTCTTTGTTGCTT+CGG - chr1_1:12818729-12818748 Msa0008840:intron 30.0%
! GCTTTATAAAGAGGATTTTG+TGG - chr1_1:12819209-12819228 Msa0008840:five_prime_UTR 30.0%
TTTCTATCACATCTCAACTT+TGG - chr1_1:12819280-12819299 Msa0008840:five_prime_UTR 30.0%
! CAGCAATTTTCATGGAATTG+CGG + chr1_1:12814258-12814277 None:intergenic 35.0%
! AAGTTTGGCAGCAATTTTCA+TGG + chr1_1:12814266-12814285 None:intergenic 35.0%
!! TTTGTTTTCTCCATCGTTGT+CGG - chr1_1:12814359-12814378 Msa0008840:three_prime_UTR 35.0%
!! GTAAGTAGCGGGTAATATAA+TGG + chr1_1:12814407-12814426 None:intergenic 35.0%
!! AAGCTTTATTCGTAAGTAGC+GGG + chr1_1:12814418-12814437 None:intergenic 35.0%
!! GAAGCTTTATTCGTAAGTAG+CGG + chr1_1:12814419-12814438 None:intergenic 35.0%
TTCAGAACTTAGAGATGCTT+GGG - chr1_1:12814489-12814508 Msa0008840:three_prime_UTR 35.0%
AAAATCTTCCTCTCTTCATC+AGG + chr1_1:12814547-12814566 None:intergenic 35.0%
!!! GTATTTCATGAGCTAGCTTT+TGG - chr1_1:12815028-12815047 Msa0008840:intron 35.0%
!!! GTATTTCTTGAGCTAGCTTT+TGG - chr1_1:12815093-12815112 Msa0008840:intron 35.0%
! TTTCTTCGAATTTGGGTTCT+AGG + chr1_1:12815131-12815150 None:intergenic 35.0%
!!! ACATTGATTTTGCCAAACAG+CGG + chr1_1:12815243-12815262 None:intergenic 35.0%
! AAGGTAATGCATGTTTTCCA+TGG - chr1_1:12815284-12815303 Msa0008840:intron 35.0%
! AGGTAATGCATGTTTTCCAT+GGG - chr1_1:12815285-12815304 Msa0008840:intron 35.0%
TTGAATGTAACCACAAGTGT+CGG + chr1_1:12815378-12815397 None:intergenic 35.0%
! CAATGAGTTGGATCCAAATA+TGG + chr1_1:12815496-12815515 None:intergenic 35.0%
AGATTTAGAGGTCAATGAGT+TGG + chr1_1:12815508-12815527 None:intergenic 35.0%
AAGAAGAGTAGATCAAATGG+AGG + chr1_1:12815592-12815611 None:intergenic 35.0%
GGTAAGAAGAGTAGATCAAA+TGG + chr1_1:12815595-12815614 None:intergenic 35.0%
TTGATCTACTCTTCTTACCA+CGG - chr1_1:12815596-12815615 Msa0008840:intron 35.0%
GAAAATAGGCTTAGATGGTT+TGG + chr1_1:12815648-12815667 None:intergenic 35.0%
TGGTAGAAAATAGGCTTAGA+TGG + chr1_1:12815653-12815672 None:intergenic 35.0%
AGCACCTATAGTAGAAAAGT+TGG + chr1_1:12815673-12815692 None:intergenic 35.0%
AGACTAGACATGATAGGATT+AGG + chr1_1:12815725-12815744 None:intergenic 35.0%
AGCTGAAAGGAAAGTTCTAT+CGG + chr1_1:12815860-12815879 None:intergenic 35.0%
AACTTTCCTTTCAGCTTAAG+TGG - chr1_1:12815864-12815883 Msa0008840:intron 35.0%
! AAAGTACCACTTAAGCTGAA+AGG + chr1_1:12815873-12815892 None:intergenic 35.0%
TACATCATCGTATTCAAGCT+GGG + chr1_1:12815938-12815957 None:intergenic 35.0%
!! TTCTCCGTCATTTTGTACTA+TGG - chr1_1:12815971-12815990 Msa0008840:intron 35.0%
GTTACACGGTTTAGATATCT+TGG + chr1_1:12815999-12816018 None:intergenic 35.0%
GATATCTAAACCGTGTAACT+TGG - chr1_1:12816000-12816019 Msa0008840:intron 35.0%
TATCTAAACCGTGTAACTTG+GGG - chr1_1:12816002-12816021 Msa0008840:intron 35.0%
ATATCATACCCCAAGTTACA+CGG + chr1_1:12816013-12816032 None:intergenic 35.0%
ACTTCAGTAAAAGGAGAAGT+GGG + chr1_1:12816064-12816083 None:intergenic 35.0%
AACTTCAGTAAAAGGAGAAG+TGG + chr1_1:12816065-12816084 None:intergenic 35.0%
! TCTGCAAAAAGCATACATCT+CGG - chr1_1:12816206-12816225 Msa0008840:intron 35.0%
! GGAGATTTTCCCATAACAAT+AGG + chr1_1:12816314-12816333 None:intergenic 35.0%
!! ATCCTGGATAGCTCTAATAT+AGG - chr1_1:12816382-12816401 Msa0008840:intron 35.0%
! GAATACCTAGAGAGATTTTG+TGG + chr1_1:12816440-12816459 None:intergenic 35.0%
!!! ACCAATTTGGTTTTATGCCT+GGG + chr1_1:12816572-12816591 None:intergenic 35.0%
!!! AACCAATTTGGTTTTATGCC+TGG + chr1_1:12816573-12816592 None:intergenic 35.0%
AAGAAAAGAGACTCACGTTA+CGG + chr1_1:12816598-12816617 None:intergenic 35.0%
TACCATGAAGTTATGGGAAA+GGG + chr1_1:12816637-12816656 None:intergenic 35.0%
ATACCATGAAGTTATGGGAA+AGG + chr1_1:12816638-12816657 None:intergenic 35.0%
GAGTCATACCATGAAGTTAT+GGG + chr1_1:12816643-12816662 None:intergenic 35.0%
TGAGTCATACCATGAAGTTA+TGG + chr1_1:12816644-12816663 None:intergenic 35.0%
ACAAGATTGCGCGAATTATA+GGG + chr1_1:12816679-12816698 None:intergenic 35.0%
TACAAGATTGCGCGAATTAT+AGG + chr1_1:12816680-12816699 None:intergenic 35.0%
TCCAATCTATAAGAACAAGG+GGG + chr1_1:12816706-12816725 None:intergenic 35.0%
TAACTATTATCGTCGGATTC+AGG + chr1_1:12816910-12816929 None:intergenic 35.0%
GAAGTGTATTAAGGATGAAG+AGG + chr1_1:12817063-12817082 None:intergenic 35.0%
CATCCTTAATACACTTCACT+TGG - chr1_1:12817066-12817085 Msa0008840:intron 35.0%
TCTATATACAAGCTTGCGAA+GGG + chr1_1:12817119-12817138 None:intergenic 35.0%
ATCTATATACAAGCTTGCGA+AGG + chr1_1:12817120-12817139 None:intergenic 35.0%
ATACCAATCTTTAGGTACCA+AGG + chr1_1:12817153-12817172 None:intergenic 35.0%
ACCTTCTGCATATCAAGAAA+AGG + chr1_1:12817467-12817486 None:intergenic 35.0%
TTTCACCAATTATGCAGACA+TGG + chr1_1:12817707-12817726 None:intergenic 35.0%
TTGGTGAAAGAATGTCTTTC+AGG - chr1_1:12817718-12817737 Msa0008840:intron 35.0%
TGGTGAAAGAATGTCTTTCA+GGG - chr1_1:12817719-12817738 Msa0008840:intron 35.0%
TTCTCTATCAAACATCACGT+TGG + chr1_1:12817848-12817867 None:intergenic 35.0%
CTCTGTAGTGTTGTAATCAA+GGG - chr1_1:12817978-12817997 Msa0008840:intron 35.0%
ATTGTTCTTCAACACAAACC+AGG + chr1_1:12818092-12818111 None:intergenic 35.0%
ACACTAAAAGAGGTTTCAGA+AGG + chr1_1:12818118-12818137 None:intergenic 35.0%
TTTAATTGGGTTTCAGAAGC+TGG + chr1_1:12818143-12818162 None:intergenic 35.0%
CCATTATCATCCACAAACAT+CGG + chr1_1:12818199-12818218 None:intergenic 35.0%
CGATGTTTGTGGATGATAAT+GGG - chr1_1:12818197-12818216 Msa0008840:intron 35.0%
! AGGTCTTCAAATTTTGCAGT+TGG - chr1_1:12818286-12818305 Msa0008840:intron 35.0%
!! GTAAGGAGCAAACCATTTTT+CGG - chr1_1:12818674-12818693 Msa0008840:intron 35.0%
!! TAAGGAGCAAACCATTTTTC+GGG - chr1_1:12818675-12818694 Msa0008840:intron 35.0%
GCAAAAAGAGTCAAACTGAA+TGG + chr1_1:12818847-12818866 None:intergenic 35.0%
! GCATTATTTACACTGGTTGT+TGG - chr1_1:12818880-12818899 Msa0008840:intron 35.0%
! TATTTACACTGGTTGTTGGT+TGG - chr1_1:12818884-12818903 Msa0008840:intron 35.0%
CACTGCTGATAAAACTATCT+TGG - chr1_1:12818936-12818955 Msa0008840:intron 35.0%
ATTGCTACTCCAGTAATTAG+TGG - chr1_1:12819182-12819201 Msa0008840:five_prime_UTR 35.0%
!! TGATTGAAGGTATCAATCGG+TGG + chr1_1:12814316-12814335 None:intergenic 40.0%
TTTCTATTAGCCGACAACGA+TGG + chr1_1:12814372-12814391 None:intergenic 40.0%
! CAAGCATCTCTAAGTTCTGA+AGG + chr1_1:12814490-12814509 None:intergenic 40.0%
CTTCAGAACTTAGAGATGCT+TGG - chr1_1:12814488-12814507 Msa0008840:three_prime_UTR 40.0%
TCGAATCAGCCAACTTATGT+GGG + chr1_1:12814864-12814883 None:intergenic 40.0%
TTCGAATCAGCCAACTTATG+TGG + chr1_1:12814865-12814884 None:intergenic 40.0%
AGCAACAAAACCACATGGAT+TGG + chr1_1:12814940-12814959 None:intergenic 40.0%
GCTAGCTCATGAAATACAAG+TGG + chr1_1:12815025-12815044 None:intergenic 40.0%
GCTAGCTCAAGAAATACAAG+TGG + chr1_1:12815090-12815109 None:intergenic 40.0%
!!! CTAGCTTTTGGAGTTGTGTT+AGG - chr1_1:12815040-12815059 Msa0008840:intron 40.0%
! TCATTCCCTTTTGTTCCTGT+TGG - chr1_1:12815173-12815192 Msa0008840:CDS 40.0%
! ACACCTTCAATCTGAAGTGT+TGG + chr1_1:12815321-12815340 None:intergenic 40.0%
AGTCAGGTTAAAAGAGGTAG+AGG + chr1_1:12815567-12815586 None:intergenic 40.0%
ACATCATTAGAGAGAGAGTG+GGG + chr1_1:12815698-12815717 None:intergenic 40.0%
GACATCATTAGAGAGAGAGT+GGG + chr1_1:12815699-12815718 None:intergenic 40.0%
TGACATCATTAGAGAGAGAG+TGG + chr1_1:12815700-12815719 None:intergenic 40.0%
GTGGTAAGACTAGACATGAT+AGG + chr1_1:12815731-12815750 None:intergenic 40.0%
TCCGTACCATACAACATTGT+CGG - chr1_1:12815822-12815841 Msa0008840:intron 40.0%
ACCGACAATGTTGTATGGTA+CGG + chr1_1:12815826-12815845 None:intergenic 40.0%
GTACATCATCGTATTCAAGC+TGG + chr1_1:12815939-12815958 None:intergenic 40.0%
GGGTCCATAGTACAAAATGA+CGG + chr1_1:12815978-12815997 None:intergenic 40.0%
ATCTCCAACTTTCACCTCTA+AGG - chr1_1:12816034-12816053 Msa0008840:CDS 40.0%
TCTACCTTAGAGGTGAAAGT+TGG + chr1_1:12816041-12816060 None:intergenic 40.0%
!! ATTCCGTCTTGTTTCTACTC+AGG - chr1_1:12816096-12816115 Msa0008840:intron 40.0%
TAACAATAGGACTGCACCAA+GGG + chr1_1:12816301-12816320 None:intergenic 40.0%
ATAACAATAGGACTGCACCA+AGG + chr1_1:12816302-12816321 None:intergenic 40.0%
TTGGTGCAGTCCTATTGTTA+TGG - chr1_1:12816301-12816320 Msa0008840:intron 40.0%
TGGTGCAGTCCTATTGTTAT+GGG - chr1_1:12816302-12816321 Msa0008840:intron 40.0%
TATCCAGGATATGTATGAGG+GGG + chr1_1:12816372-12816391 None:intergenic 40.0%
CTATCCAGGATATGTATGAG+GGG + chr1_1:12816373-12816392 None:intergenic 40.0%
GCTATCCAGGATATGTATGA+GGG + chr1_1:12816374-12816393 None:intergenic 40.0%
AGCTATCCAGGATATGTATG+AGG + chr1_1:12816375-12816394 None:intergenic 40.0%
TGCCTATATTAGAGCTATCC+AGG + chr1_1:12816387-12816406 None:intergenic 40.0%
GCTTTCCACAAAATCTCTCT+AGG - chr1_1:12816432-12816451 Msa0008840:intron 40.0%
!!! AATTTGGTTTTATGCCTGGG+AGG + chr1_1:12816569-12816588 None:intergenic 40.0%
TCCCAGGCATAAAACCAAAT+TGG - chr1_1:12816568-12816587 Msa0008840:intron 40.0%
CACGTTACGGATAACCAATT+TGG + chr1_1:12816585-12816604 None:intergenic 40.0%
TACCCTTTCCCATAACTTCA+TGG - chr1_1:12816632-12816651 Msa0008840:intron 40.0%
CAAGATTGCGCGAATTATAG+GGG + chr1_1:12816678-12816697 None:intergenic 40.0%
TCCCCCTTGTTCTTATAGAT+TGG - chr1_1:12816702-12816721 Msa0008840:intron 40.0%
TATGAGGACGAAGAAAATGC+CGG + chr1_1:12816754-12816773 None:intergenic 40.0%
ATCGAAGTGTGGAAAAGTCT+TGG + chr1_1:12816819-12816838 None:intergenic 40.0%
! AGACTTTTCCACACTTCGAT+AGG - chr1_1:12816819-12816838 Msa0008840:intron 40.0%
ACAACATACCTATCGAAGTG+TGG + chr1_1:12816830-12816849 None:intergenic 40.0%
ACTTCGATAGGTATGTTGTC+CGG - chr1_1:12816831-12816850 Msa0008840:intron 40.0%
GAAAAGGATGAGTAATGGCA+AGG + chr1_1:12816865-12816884 None:intergenic 40.0%
GCGTTGAAAAGGATGAGTAA+TGG + chr1_1:12816870-12816889 None:intergenic 40.0%
!! AGGTGAAAGAAGCGTTGAAA+AGG + chr1_1:12816881-12816900 None:intergenic 40.0%
TAACAGGTTAGACATCAGAG+AGG + chr1_1:12816946-12816965 None:intergenic 40.0%
ATGTCTAACCTGTTAGAGTC+TGG - chr1_1:12816951-12816970 Msa0008840:intron 40.0%
AGATCTTACCAGACTCTAAC+AGG + chr1_1:12816962-12816981 None:intergenic 40.0%
GGTGCAAGAGAGAGATATTA+AGG + chr1_1:12817030-12817049 None:intergenic 40.0%
!! GGATGAAGAGGGTATAGTTT+TGG + chr1_1:12817051-12817070 None:intergenic 40.0%
GGACCAAGTGAAGTGTATTA+AGG + chr1_1:12817072-12817091 None:intergenic 40.0%
TAATACACTTCACTTGGTCC+AGG - chr1_1:12817072-12817091 Msa0008840:intron 40.0%
AATCTTTAGGTACCAAGGAG+GGG + chr1_1:12817148-12817167 None:intergenic 40.0%
CAATCTTTAGGTACCAAGGA+GGG + chr1_1:12817149-12817168 None:intergenic 40.0%
TTGAATGTAAGCTTGCGAGA+AGG + chr1_1:12817213-12817232 None:intergenic 40.0%
ATTATTGCTATGGTCGCGTA+TGG - chr1_1:12817251-12817270 Msa0008840:intron 40.0%
! TTGCGTTGGTGCTTCATAAT+TGG - chr1_1:12817283-12817302 Msa0008840:intron 40.0%
CAAGAAAAGGCTAAAGCGTA+AGG + chr1_1:12817454-12817473 None:intergenic 40.0%
! GCCTTTTCTTGATATGCAGA+AGG - chr1_1:12817463-12817482 Msa0008840:intron 40.0%
!! TTCAGGGCTCTTTAAGACAT+TGG - chr1_1:12817735-12817754 Msa0008840:intron 40.0%
! TGCAATTTTACACCACCAAC+AGG - chr1_1:12817770-12817789 Msa0008840:intron 40.0%
! AATTGCTACTTGATGCCTGT+TGG + chr1_1:12817788-12817807 None:intergenic 40.0%
TGTCACGAACACCATATGAT+TGG + chr1_1:12817896-12817915 None:intergenic 40.0%
TTAAGAGAGTTGTGTCCCTT+AGG - chr1_1:12817930-12817949 Msa0008840:intron 40.0%
CTACACCTCTAAATGCCTAA+GGG + chr1_1:12817948-12817967 None:intergenic 40.0%
TCTACACCTCTAAATGCCTA+AGG + chr1_1:12817949-12817968 None:intergenic 40.0%
GCTCTGTAGTGTTGTAATCA+AGG - chr1_1:12817977-12817996 Msa0008840:intron 40.0%
CGTTCGGGTAAAATAGTGAT+AGG + chr1_1:12818035-12818054 None:intergenic 40.0%
!!! TCGGTTTTGAGTACTACGTT+CGG + chr1_1:12818051-12818070 None:intergenic 40.0%
GAAGCTGGTAACACTAAAAG+AGG + chr1_1:12818128-12818147 None:intergenic 40.0%
TATCATCCACAAACATCGGA+GGG + chr1_1:12818195-12818214 None:intergenic 40.0%
TTATCATCCACAAACATCGG+AGG + chr1_1:12818196-12818215 None:intergenic 40.0%
CCGATGTTTGTGGATGATAA+TGG - chr1_1:12818196-12818215 Msa0008840:intron 40.0%
AAACCTCAATTATACCGCTC+AGG - chr1_1:12818340-12818359 Msa0008840:intron 40.0%
AGATATGATAAGTGCCTGAG+CGG + chr1_1:12818357-12818376 None:intergenic 40.0%
ACAAAGCAAGGAAGACTGAA+GGG + chr1_1:12818656-12818675 None:intergenic 40.0%
TACAAAGCAAGGAAGACTGA+AGG + chr1_1:12818657-12818676 None:intergenic 40.0%
TCAGTCTTCCTTGCTTTGTA+AGG - chr1_1:12818657-12818676 Msa0008840:intron 40.0%
TACTCCAGTAATTAGTGGAG+TGG - chr1_1:12819187-12819206 Msa0008840:five_prime_UTR 40.0%
AAAGCCACTCCACTAATTAC+TGG + chr1_1:12819194-12819213 None:intergenic 40.0%
!! AGTGGAGTGGCTTTATAAAG+AGG - chr1_1:12819200-12819219 Msa0008840:five_prime_UTR 40.0%
!! CATCTCAACTTTGGTGTTCT+TGG - chr1_1:12819289-12819308 Msa0008840:five_prime_UTR 40.0%
!! TGCGGTGACGATATTGGTTT+GGG + chr1_1:12814240-12814259 None:intergenic 45.0%
! TTGCGGTGACGATATTGGTT+TGG + chr1_1:12814241-12814260 None:intergenic 45.0%
TGGAATTGCGGTGACGATAT+TGG + chr1_1:12814246-12814265 None:intergenic 45.0%
TTGCTTCTCCTGATGAAGAG+AGG - chr1_1:12814536-12814555 Msa0008840:CDS 45.0%
! TATAGAGCTTTGCTCTGGGT+GGG + chr1_1:12814833-12814852 None:intergenic 45.0%
ACCCAGAGCAAAGCTCTATA+GGG - chr1_1:12814833-12814852 Msa0008840:intron 45.0%
TCCCTATAGAGCTTTGCTCT+GGG + chr1_1:12814837-12814856 None:intergenic 45.0%
TTCGAACCTGAGACCTTAAC+AGG - chr1_1:12814879-12814898 Msa0008840:intron 45.0%
CTTAGAGCGTACTCCTGTTA+AGG + chr1_1:12814895-12814914 None:intergenic 45.0%
! CTTAACAGGAGTACGCTCTA+AGG - chr1_1:12814893-12814912 Msa0008840:intron 45.0%
GCTCAAGCAACAAAACCACA+TGG + chr1_1:12814945-12814964 None:intergenic 45.0%
GCACCAACACTTCAGATTGA+AGG - chr1_1:12815315-12815334 Msa0008840:intron 45.0%
! CTTCAGATTGAAGGTGTGTC+CGG - chr1_1:12815324-12815343 Msa0008840:intron 45.0%
AACGCCTTATCCCACTAAGT+GGG - chr1_1:12815426-12815445 Msa0008840:intron 45.0%
GAGGAGAGTCAGGTTAAAAG+AGG + chr1_1:12815573-12815592 None:intergenic 45.0%
AGATCAAATGGAGGAGAGTC+AGG + chr1_1:12815583-12815602 None:intergenic 45.0%
GGTTTGGACATGTAGAGAGA+AGG + chr1_1:12815632-12815651 None:intergenic 45.0%
CATCATTAGAGAGAGAGTGG+GGG + chr1_1:12815697-12815716 None:intergenic 45.0%
CGAGAGTAAAGTAAGCGTAG+CGG + chr1_1:12815778-12815797 None:intergenic 45.0%
CGCTTACTTTACTCTCGTGT+TGG - chr1_1:12815781-12815800 Msa0008840:intron 45.0%
! GTTGTATGGTACGGAGTGTT+GGG + chr1_1:12815817-12815836 None:intergenic 45.0%
TGTTGTATGGTACGGAGTGT+TGG + chr1_1:12815818-12815837 None:intergenic 45.0%
GTCAGACCGACAATGTTGTA+TGG + chr1_1:12815831-12815850 None:intergenic 45.0%
CTTATCGCACAAAACACCTG+AGG - chr1_1:12815893-12815912 Msa0008840:intron 45.0%
TTGAAATGGAGAAGAGCCTC+AGG + chr1_1:12815912-12815931 None:intergenic 45.0%
TTCAAGCTGGGTGGTTGAAA+TGG + chr1_1:12815926-12815945 None:intergenic 45.0%
ATCATCGTATTCAAGCTGGG+TGG + chr1_1:12815935-12815954 None:intergenic 45.0%
! GCAGATGATGTAGTCTTGCT+TGG + chr1_1:12816191-12816210 None:intergenic 45.0%
!! TACATCTCGGTGCTAACTCT+TGG - chr1_1:12816219-12816238 Msa0008840:intron 45.0%
! AGAGATTTTGTGGAAAGCCC+TGG + chr1_1:12816430-12816449 None:intergenic 45.0%
GTCTTGGCGATAGAGGAATT+GGG + chr1_1:12816803-12816822 None:intergenic 45.0%
AGTCTTGGCGATAGAGGAAT+TGG + chr1_1:12816804-12816823 None:intergenic 45.0%
TGGAAAAGTCTTGGCGATAG+AGG + chr1_1:12816810-12816829 None:intergenic 45.0%
TGAGTAATGGCAAGGCAGTT+GGG + chr1_1:12816857-12816876 None:intergenic 45.0%
ATGAGTAATGGCAAGGCAGT+TGG + chr1_1:12816858-12816877 None:intergenic 45.0%
AGAACGAAAGACAAGAGACC+TGG + chr1_1:12817093-12817112 None:intergenic 45.0%
TATAGATTTCTCCCCCTCCT+TGG - chr1_1:12817133-12817152 Msa0008840:intron 45.0%
ATCTTTAGGTACCAAGGAGG+GGG + chr1_1:12817147-12817166 None:intergenic 45.0%
CCAATCTTTAGGTACCAAGG+AGG + chr1_1:12817150-12817169 None:intergenic 45.0%
CCTCCTTGGTACCTAAAGAT+TGG - chr1_1:12817147-12817166 Msa0008840:intron 45.0%
GCGAGAACTCAAGCATTTGA+AGG + chr1_1:12817179-12817198 None:intergenic 45.0%
AATGTAAGCTTGCGAGAAGG+CGG + chr1_1:12817210-12817229 None:intergenic 45.0%
TATGGTGTCCATGTTTGCGT+TGG - chr1_1:12817269-12817288 Msa0008840:intron 45.0%
! ATGAAGCACCAACGCAAACA+TGG + chr1_1:12817280-12817299 None:intergenic 45.0%
!! AGTACTGACAACGCATGCAA+CGG + chr1_1:12817515-12817534 None:intergenic 45.0%
GGTGTCCATGTCTGCATAAT+TGG - chr1_1:12817699-12817718 Msa0008840:intron 45.0%
TGTGTCCCTTAGGCATTTAG+AGG - chr1_1:12817940-12817959 Msa0008840:intron 45.0%
!!! CGGTTTTGAGTACTACGTTC+GGG + chr1_1:12818050-12818069 None:intergenic 45.0%
TGCTGTTCGCATGATTCCAT+GGG - chr1_1:12818310-12818329 Msa0008840:intron 45.0%
CAGGCACTTATCATATCTGC+TGG - chr1_1:12818359-12818378 Msa0008840:intron 45.0%
! GGTTTGCTCCTTACAAAGCA+AGG + chr1_1:12818668-12818687 None:intergenic 45.0%
AAGCATAGGAGCCCGAAAAA+TGG + chr1_1:12818689-12818708 None:intergenic 45.0%
AAGATGAAACCGTGTCACGA+TGG + chr1_1:12819005-12819024 None:intergenic 45.0%
ACCTGTACGACTTTGCTTTC+TGG - chr1_1:12819083-12819102 Msa0008840:five_prime_UTR 45.0%
CCTGTACGACTTTGCTTTCT+GGG - chr1_1:12819084-12819103 Msa0008840:five_prime_UTR 45.0%
!! CTCAACTTTGGTGTTCTTGG+TGG - chr1_1:12819292-12819311 Msa0008840:five_prime_UTR 45.0%
! ATAGAGCTTTGCTCTGGGTG+GGG + chr1_1:12814832-12814851 None:intergenic 50.0%
! CTATAGAGCTTTGCTCTGGG+TGG + chr1_1:12814834-12814853 None:intergenic 50.0%
CACCCAGAGCAAAGCTCTAT+AGG - chr1_1:12814832-12814851 Msa0008840:intron 50.0%
GTCCCTATAGAGCTTTGCTC+TGG + chr1_1:12814838-12814857 None:intergenic 50.0%
!! AGGGACTAGCCCACATAAGT+TGG - chr1_1:12814852-12814871 Msa0008840:intron 50.0%
CGTACTCCTGTTAAGGTCTC+AGG + chr1_1:12814888-12814907 None:intergenic 50.0%
!! TGTTGGTGCTACATAGCCCA+TGG + chr1_1:12815304-12815323 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG - chr1_1:12815425-12815444 Msa0008840:intron 50.0%
ACGCCTTATCCCACTAAGTG+GGG - chr1_1:12815427-12815446 Msa0008840:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG - chr1_1:12815431-12815450 Msa0008840:intron 50.0%
TCTTCTTACCACGGCGTCTA+CGG - chr1_1:12815605-12815624 Msa0008840:intron 50.0%
AGGATGTTGCGTTGGATGAG+TGG + chr1_1:12815750-12815769 None:intergenic 50.0%
! AAGTAAGCGTAGCGGAGATG+AGG + chr1_1:12815770-12815789 None:intergenic 50.0%
GAGAAGTGGGTCTACCTTAG+AGG + chr1_1:12816051-12816070 None:intergenic 50.0%
CCGCCTGAGTAGAAACAAGA+CGG + chr1_1:12816102-12816121 None:intergenic 50.0%
!! CCGTCTTGTTTCTACTCAGG+CGG - chr1_1:12816099-12816118 Msa0008840:intron 50.0%
! AGGCAAGCCTTAGAAGCGTA+CGG + chr1_1:12816128-12816147 None:intergenic 50.0%
TAAACGGGAGGCTAGAGACT+TGG + chr1_1:12816151-12816170 None:intergenic 50.0%
AGTCGAGGGAGGAGTTAAAC+GGG + chr1_1:12816166-12816185 None:intergenic 50.0%
GAGTCGAGGGAGGAGTTAAA+CGG + chr1_1:12816167-12816186 None:intergenic 50.0%
! AGTCTTGCTTGGTGAGTCGA+GGG + chr1_1:12816180-12816199 None:intergenic 50.0%
! TAGTCTTGCTTGGTGAGTCG+AGG + chr1_1:12816181-12816200 None:intergenic 50.0%
AAGGACTTAGGGTTGACCCT+TGG - chr1_1:12816282-12816301 Msa0008840:intron 50.0%
AAGCCCCCTCATACATATCC+TGG - chr1_1:12816366-12816385 Msa0008840:intron 50.0%
AAAGCCCTGGAGAAGAAAGG+GGG + chr1_1:12816417-12816436 None:intergenic 50.0%
GAAAGCCCTGGAGAAGAAAG+GGG + chr1_1:12816418-12816437 None:intergenic 50.0%
GGAAAGCCCTGGAGAAGAAA+GGG + chr1_1:12816419-12816438 None:intergenic 50.0%
TGGAAAGCCCTGGAGAAGAA+AGG + chr1_1:12816420-12816439 None:intergenic 50.0%
CTACTTACTTCGACGCGTGA+TGG + chr1_1:12816529-12816548 None:intergenic 50.0%
TTGGCGATAGAGGAATTGGG+TGG + chr1_1:12816800-12816819 None:intergenic 50.0%
CAGGTTAGACATCAGAGAGG+AGG + chr1_1:12816943-12816962 None:intergenic 50.0%
! TGCTACTTGATGCCTGTTGG+TGG + chr1_1:12817785-12817804 None:intergenic 50.0%
GTGTAACCCTCCGATGTTTG+TGG - chr1_1:12818186-12818205 Msa0008840:intron 50.0%
CTGCTGTTCGCATGATTCCA+TGG - chr1_1:12818309-12818328 Msa0008840:intron 50.0%
TCGCATGATTCCATGGGCAA+AGG - chr1_1:12818316-12818335 Msa0008840:intron 50.0%
TTGAGGTTTGCCTTTGCCCA+TGG + chr1_1:12818329-12818348 None:intergenic 50.0%
GTGCCTGAGCGGTATAATTG+AGG + chr1_1:12818346-12818365 None:intergenic 50.0%
! TCTGAGACACCATCGTGACA+CGG - chr1_1:12818993-12819012 Msa0008840:CDS 50.0%
! GAAGCTGCTTTACTCGTTGC+TGG - chr1_1:12819026-12819045 Msa0008840:CDS 50.0%
! GCTTTACTCGTTGCTGGTCT+TGG - chr1_1:12819032-12819051 Msa0008840:CDS 50.0%
CCCAGAAAGCAAAGTCGTAC+AGG + chr1_1:12819087-12819106 None:intergenic 50.0%
!! ATGGATTGGCTCGCTGGTGT+AGG + chr1_1:12814926-12814945 None:intergenic 55.0%
!! AACCACATGGATTGGCTCGC+TGG + chr1_1:12814932-12814951 None:intergenic 55.0%
!! CACAAGTGTCGGTGTCGTGT+TGG + chr1_1:12815367-12815386 None:intergenic 55.0%
CAACACGACACCGACACTTG+TGG - chr1_1:12815365-12815384 Msa0008840:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG + chr1_1:12815433-12815452 None:intergenic 55.0%
TGTAGCCGACCCCACTTAGT+GGG + chr1_1:12815439-12815458 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG + chr1_1:12815440-12815459 None:intergenic 55.0%
ACTAAGTGGGGTCGGCTACA+TGG - chr1_1:12815439-12815458 Msa0008840:intron 55.0%
CTTCTTACCACGGCGTCTAC+GGG - chr1_1:12815606-12815625 Msa0008840:intron 55.0%
CGGAGATGAGGATGTTGCGT+TGG + chr1_1:12815758-12815777 None:intergenic 55.0%
!! GTATGGTACGGAGTGTTGGG+CGG + chr1_1:12815814-12815833 None:intergenic 55.0%
GCGGAAACCGTACGCTTCTA+AGG - chr1_1:12816118-12816137 Msa0008840:intron 55.0%
TAGTGTGAGGACGCAGGATG+GGG + chr1_1:12816342-12816361 None:intergenic 55.0%
CTAGTGTGAGGACGCAGGAT+GGG + chr1_1:12816343-12816362 None:intergenic 55.0%
ACTAGTGTGAGGACGCAGGA+TGG + chr1_1:12816344-12816363 None:intergenic 55.0%
TTCGACTAGTGTGAGGACGC+AGG + chr1_1:12816348-12816367 None:intergenic 55.0%
CTCACCCCCTTTCTTCTCCA+GGG - chr1_1:12816410-12816429 Msa0008840:intron 55.0%
! CGTGATGGAGCGATATCGGA+CGG + chr1_1:12816514-12816533 None:intergenic 55.0%
! GACGCGTGATGGAGCGATAT+CGG + chr1_1:12816518-12816537 None:intergenic 55.0%
TATGCCTGGGAGGTCGACTA+TGG + chr1_1:12816559-12816578 None:intergenic 55.0%
GTGCTTCTTCTCCACTCGTC+CGG - chr1_1:12816732-12816751 Msa0008840:intron 55.0%
CGAAGAAAATGCCGGACGAG+TGG + chr1_1:12816746-12816765 None:intergenic 55.0%
TAATGGCAAGGCAGTTGGGC+CGG + chr1_1:12816853-12816872 None:intergenic 55.0%
! TATGCAGAAGGTGTGCGTGC+TGG - chr1_1:12817475-12817494 Msa0008840:intron 55.0%
AGGTGTGCGTGCTGGATTCA+AGG - chr1_1:12817483-12817502 Msa0008840:intron 55.0%
ACTGACAACGCATGCAACGG+CGG + chr1_1:12817512-12817531 None:intergenic 55.0%
TGCTTTCTGGGTCTGTCTCG+TGG - chr1_1:12819096-12819115 Msa0008840:five_prime_UTR 55.0%
CACCAGCGAGCCAATCCATG+TGG - chr1_1:12814927-12814946 Msa0008840:intron 60.0%
TCGTGTTGGACGCGTCGTGT+TGG + chr1_1:12815353-12815372 None:intergenic 60.0%
ACGGGAGGCTAGAGACTTGG+AGG + chr1_1:12816148-12816167 None:intergenic 60.0%
CGAGGGAGGAGTTAAACGGG+AGG + chr1_1:12816163-12816182 None:intergenic 60.0%
! CTTGCTTGGTGAGTCGAGGG+AGG + chr1_1:12816177-12816196 None:intergenic 60.0%
AGGACGCAGGATGGGGATAC+CGG + chr1_1:12816335-12816354 None:intergenic 60.0%
AGGGGGCTTCGACTAGTGTG+AGG + chr1_1:12816355-12816374 None:intergenic 60.0%
CCTGGAGAAGAAAGGGGGTG+AGG + chr1_1:12816412-12816431 None:intergenic 60.0%
CCTCACCCCCTTTCTTCTCC+AGG - chr1_1:12816409-12816428 Msa0008840:intron 60.0%
GCTTCCATAGTCGACCTCCC+AGG - chr1_1:12816552-12816571 Msa0008840:intron 60.0%
! TCGTCGGATTCAGGAGCACG+AGG + chr1_1:12816901-12816920 None:intergenic 60.0%
GGACGCGTCGTGTTGGACAC+CGG + chr1_1:12815346-12815365 None:intergenic 65.0%
GAGAAGGCCCGTAGACGCCG+TGG + chr1_1:12815616-12815635 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 12814218 12819335 12814218 ID=Msa0008840;Name=Msa0008840
chr1_1 mRNA 12814218 12819335 12814218 ID=Msa0008840-mRNA-1;Parent=Msa0008840;Name=Msa0008840-mRNA-1;_AED=0.05;_eAED=0.05;_QI=260|1|1|1|1|1|4|309|120
chr1_1 exon 12814218 12814639 12814218 ID=Msa0008840-mRNA-1:exon:4859;Parent=Msa0008840-mRNA-1
chr1_1 exon 12815173 12815248 12815173 ID=Msa0008840-mRNA-1:exon:4858;Parent=Msa0008840-mRNA-1
chr1_1 exon 12816010 12816071 12816010 ID=Msa0008840-mRNA-1:exon:4857;Parent=Msa0008840-mRNA-1
chr1_1 exon 12818964 12819335 12818964 ID=Msa0008840-mRNA-1:exon:4856;Parent=Msa0008840-mRNA-1
chr1_1 five_prime_UTR 12819076 12819335 12819076 ID=Msa0008840-mRNA-1:five_prime_utr;Parent=Msa0008840-mRNA-1
chr1_1 CDS 12818964 12819075 12818964 ID=Msa0008840-mRNA-1:cds;Parent=Msa0008840-mRNA-1
chr1_1 CDS 12816010 12816071 12816010 ID=Msa0008840-mRNA-1:cds;Parent=Msa0008840-mRNA-1
chr1_1 CDS 12815173 12815248 12815173 ID=Msa0008840-mRNA-1:cds;Parent=Msa0008840-mRNA-1
chr1_1 CDS 12814527 12814639 12814527 ID=Msa0008840-mRNA-1:cds;Parent=Msa0008840-mRNA-1
chr1_1 three_prime_UTR 12814218 12814526 12814218 ID=Msa0008840-mRNA-1:three_prime_utr;Parent=Msa0008840-mRNA-1
Gene Sequence

>Msa0008840

ATGGGTATTCCTTCAGAACTTAGAGATGCTTGGGTTTCCAAAAGAAATTCATTTATTATTGCTTCTCCTGATGAAGAGAGGAAGATTTTGAGAACCAAAAAATGTACTAATGAAGGTGTGCGTGCTGGATTCAAGGCAGCCGCCGTTGCATGCGTTGTCAGTACTGTACCAACATTGGCTGCTGTTCGCATGATTCCATGGGCAAAGGCAAACCTCAATTATACCGCTCAGGCACTTATCATATCTGCTGCATCGATTGCAGCATATTTCATCACTGCTGATAAAACTATCTTGGAATGTGCGAGAAAAAATGCGCAGCTTGAAAATTCTCTGAGACACCATCGTGACACGGTTTCATCTTAG
Protein sequence

>Msa0008840

MGIPSELRDAWVSKRNSFIIASPDEERKILRTKKCTNEGVRAGFKAAAVACVVSTVPTLAAVRMIPWAKANLNYTAQALIISAASIAAYFITADKTILECARKNAQLENSLRHHRDTVSS*