AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0899730


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899730 MtrunA17_Chr6g0485711 98.259 517 6 1 1 517 1 514 0.0 1037
Msa0899730 MtrunA17_Chr8g0355281 45.161 248 116 4 183 425 71 303 7.51e-62 206
Msa0899730 MtrunA17_Chr4g0044131 25.600 250 157 6 187 434 14 236 8.16e-15 74.7
Msa0899730 MtrunA17_Chr4g0028911 25.463 216 146 4 175 389 5 206 1.74e-14 73.9
Msa0899730 MtrunA17_Chr4g0028921 25.000 216 147 4 175 389 5 206 3.92e-14 72.8
Msa0899730 MtrunA17_Chr7g0267011 27.723 202 120 5 187 385 14 192 7.23e-14 70.5
Msa0899730 MtrunA17_Chr3g0123251 26.923 234 141 10 167 389 31 245 1.09e-13 72.0
Msa0899730 MtrunA17_Chr1g0171831 22.458 236 169 5 175 408 8 231 6.42e-12 65.9
Msa0899730 MtrunA17_Chr3g0112171 24.303 251 161 8 187 436 21 243 6.57e-12 66.2
Msa0899730 MtrunA17_Chr7g0239501 26.829 205 129 6 187 390 22 206 7.53e-12 65.9
Msa0899730 MtrunA17_Chr3g0123231 25.541 231 140 8 172 389 29 240 4.72e-11 64.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0899730 AT4G13250.1 75.388 451 106 2 72 517 46 496 0.0 696
Msa0899730 AT4G13250.2 74.945 451 106 3 72 517 46 494 0.0 687
Msa0899730 AT5G04900.1 42.308 286 137 6 183 456 79 348 5.18e-64 212
Msa0899730 AT1G24360.1 27.273 209 123 6 186 389 79 263 5.39e-14 73.6
Msa0899730 AT1G10310.1 30.622 209 124 4 184 392 18 205 1.28e-13 71.2
Msa0899730 AT3G46170.1 22.672 247 171 4 175 418 20 249 3.62e-13 70.5
Msa0899730 AT5G65205.1 29.665 209 121 6 186 393 11 194 3.66e-13 70.5
Msa0899730 AT3G55310.1 23.171 246 171 4 175 418 11 240 7.93e-13 69.3
Msa0899730 AT3G55290.2 22.672 247 173 4 174 418 10 240 1.78e-12 68.6
Msa0899730 AT3G55290.1 22.672 247 173 4 174 418 11 241 1.78e-12 68.6
Msa0899730 AT4G13180.1 27.273 231 142 8 184 408 16 226 2.42e-12 67.8
Msa0899730 AT1G63380.3 23.853 218 148 5 175 389 9 211 2.93e-12 67.8
Msa0899730 AT1G63380.2 23.853 218 148 5 175 389 16 218 3.17e-12 67.8
Msa0899730 AT1G63380.1 23.853 218 148 5 175 389 11 213 3.54e-12 67.4
Msa0899730 AT1G63380.4 23.853 218 148 5 175 389 13 215 4.01e-12 67.4
Msa0899730 AT5G06060.1 25.581 258 155 8 184 436 12 237 1.84e-11 65.1
Msa0899730 AT1G62610.3 22.936 218 150 4 175 389 9 211 7.06e-11 63.5
Msa0899730 AT1G62610.1 22.936 218 150 4 175 389 8 210 7.12e-11 63.5
Msa0899730 AT1G62610.2 22.936 218 150 4 175 389 7 209 7.87e-11 63.5
Msa0899730 AT1G62610.4 22.936 218 150 5 175 389 13 215 9.33e-11 63.2

Find 135 sgRNAs with CRISPR-Local

Find 354 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTTATTTATTGTTGTGATTT+TGG 0.167686 6_1:-95070311 None:intergenic
AATGTTCTAGCAACAGTTTC+AGG 0.185260 6_1:-95075022 None:intergenic
TCATCTGGGGTGTTTGGTTT+TGG 0.190160 6_1:+95070524 Msa0899730:CDS
GCGCGGGAGTTTCTTCTTTC+GGG 0.199031 6_1:+95072084 Msa0899730:CDS
GTTGAGAAATTTGAAGAAAA+AGG 0.210607 6_1:+95070634 Msa0899730:CDS
GTGAAACTTCAAATAGAAAA+TGG 0.225138 6_1:+95070659 Msa0899730:CDS
ATAGATTGTCTCGACAAATT+TGG 0.227491 6_1:+95073040 Msa0899730:intron
AACAAGATTGCTGTTCAAAT+TGG 0.227837 6_1:+95071412 Msa0899730:intron
TTCAAATAGAAAATGGGTTT+TGG 0.249039 6_1:+95070666 Msa0899730:CDS
TATTGAACATTTGCTTGTTT+TGG 0.252873 6_1:-95074985 None:intergenic
GGCGCGGGAGTTTCTTCTTT+CGG 0.255877 6_1:+95072083 Msa0899730:CDS
AACTTGGTTATATTGACATT+TGG 0.298895 6_1:+95072408 Msa0899730:CDS
AATTCTTCATCTGGGGTGTT+TGG 0.300534 6_1:+95070518 Msa0899730:CDS
AACAATGCTGGAACAAATAA+AGG 0.317086 6_1:+95072808 Msa0899730:CDS
GGTAGCTCAAATTCTTCATC+TGG 0.318654 6_1:+95070509 Msa0899730:CDS
GCCAGGCCACATATTTAATA+TGG 0.321841 6_1:+95073118 Msa0899730:CDS
AGTATAGACAAGCTGTTGTT+AGG 0.324288 6_1:+95070747 Msa0899730:CDS
CCACGTAATGTTGTCATAAC+TGG 0.334142 6_1:+95071778 Msa0899730:CDS
CTTTCTCAAGCAAAAGTTGT+AGG 0.337639 6_1:+95072323 Msa0899730:CDS
AAGCAGACCGACTTAGAAAC+TGG 0.348050 6_1:+95075920 Msa0899730:CDS
ACTTGGTTATATTGACATTT+GGG 0.349608 6_1:+95072409 Msa0899730:CDS
GGTTGATGAAGTTCTATCTA+AGG 0.354535 6_1:+95070769 Msa0899730:CDS
CACAGTTGCTTGCACAGACT+CGG 0.355409 6_1:-95072237 None:intergenic
GGACAATGATAGGTGCTAAC+TGG 0.357627 6_1:+95071728 Msa0899730:CDS
AATAAACATAAGCTAAGAAA+TGG 0.370948 6_1:+95070482 Msa0899730:CDS
AACTTTGCTGTCAGCGAACT+TGG 0.373965 6_1:+95072392 Msa0899730:CDS
AATATGGACGGTGCAGGTTC+CGG 0.376327 6_1:+95073134 Msa0899730:CDS
GTGATCCATGAAATTGTCTA+AGG 0.376708 6_1:-95074652 None:intergenic
TCCTAGAATCTTGCTTGCCT+TGG 0.382251 6_1:+95075102 Msa0899730:CDS
TGTGAAAATATCTGATTCAT+TGG 0.386607 6_1:-95070251 None:intergenic
TTCAATAAATTGCATGCATC+AGG 0.387174 6_1:-95076087 None:intergenic
GCATCAGGATATTATGTTCC+AGG 0.402455 6_1:-95076072 None:intergenic
GTCAGATGGATGCACTGATA+TGG 0.403741 6_1:+95071677 Msa0899730:CDS
TGTGGCCTTAGACAATTTCA+TGG 0.405958 6_1:+95074647 Msa0899730:CDS
GTGTGCAGTACAAGGGGATT+GGG 0.408179 6_1:+95072051 Msa0899730:intron
TTGAATTAATGTAACATGTT+TGG 0.412019 6_1:-95070334 None:intergenic
GTTTCTAAGTCGGTCTGCTT+CGG 0.419711 6_1:-95075917 None:intergenic
TGCTTGCCTTGGTCACTGCT+TGG 0.422221 6_1:+95075113 Msa0899730:CDS
CATAAGCTAAGAAATGGATT+TGG 0.422384 6_1:+95070488 Msa0899730:CDS
ACCAAGGCAAGCAAGATTCT+AGG 0.424125 6_1:-95075103 None:intergenic
GCAATTGGATTTCAGATGTC+AGG 0.424710 6_1:+95071475 Msa0899730:CDS
ATATGTGGCCTGGCTTGGTT+TGG 0.425470 6_1:-95073109 None:intergenic
CCTTGGTCACTGCTTGGTTA+CGG 0.429312 6_1:+95075119 Msa0899730:CDS
CTTGGTTACGGCGAGGTCGC+TGG 0.429812 6_1:+95075131 Msa0899730:CDS
ATTAAATATGTGGCCTGGCT+TGG 0.433257 6_1:-95073114 None:intergenic
AAGGGGATTGGGCAAAGCTT+TGG 0.434610 6_1:+95072062 Msa0899730:CDS
ATAACTATAAGCATCACAAT+GGG 0.437700 6_1:-95076327 None:intergenic
AGTGAAGATGGTGGTGGTGG+TGG 0.446076 6_1:+95070593 Msa0899730:CDS
TGTGTGCAGTACAAGGGGAT+TGG 0.447496 6_1:+95072050 Msa0899730:intron
TGAAACTTCAAATAGAAAAT+GGG 0.449170 6_1:+95070660 Msa0899730:CDS
ATGCGAGTCGTTAAAGGAAC+AGG 0.454121 6_1:+95075055 Msa0899730:CDS
ACAGTTGCTTGCACAGACTC+GGG 0.456665 6_1:-95072236 None:intergenic
GTAGCTCAAATTCTTCATCT+GGG 0.461951 6_1:+95070510 Msa0899730:CDS
GTTATCATCGGGACAATGAT+AGG 0.476859 6_1:+95071718 Msa0899730:CDS
GGCTAATGATGTTCAGAGAT+TGG 0.478323 6_1:+95072367 Msa0899730:CDS
ATATGGTATAGTTGGCTTGG+AGG 0.479095 6_1:+95071694 Msa0899730:CDS
ACTGGAGTGATCCTTGCAAT+TGG 0.479580 6_1:+95071460 Msa0899730:CDS
GTATAGACAAGCTGTTGTTA+GGG 0.482674 6_1:+95070748 Msa0899730:CDS
ACTGTTTGAAGAAGTTTATG+TGG 0.483453 6_1:-95076199 None:intergenic
AGGAGGAGTCAAGTAATTGA+TGG 0.484820 6_1:-95075083 None:intergenic
AGCACTAGCAGCAATTTGCC+TGG 0.492616 6_1:+95076054 Msa0899730:CDS
ATGAGAAACCAAACCAAGCC+AGG 0.506303 6_1:+95073101 Msa0899730:CDS
CAGTGATGAAGACATCAAAC+AGG 0.507912 6_1:+95072852 Msa0899730:CDS
CTGATATGGTATAGTTGGCT+TGG 0.508323 6_1:+95071691 Msa0899730:CDS
CAGAGGTGTGCTAGAGCCTC+CGG 0.510047 6_1:-95073153 None:intergenic
GGCTTGGAGGAGTTATCATC+GGG 0.510806 6_1:+95071707 Msa0899730:CDS
ATATTTAATATGGACGGTGC+AGG 0.513940 6_1:+95073128 Msa0899730:CDS
ATGCATGCAATTTATTGAAG+AGG 0.515674 6_1:+95076091 Msa0899730:three_prime_UTR
TGTGTACATTTCCATTGCAT+CGG 0.516968 6_1:-95075971 None:intergenic
GAGTGCAAGCGATCGAAAGT+AGG 0.517173 6_1:+95074683 Msa0899730:CDS
CACCGTCCATATTAAATATG+TGG 0.518027 6_1:-95073124 None:intergenic
ATTGGGCAAAGCTTTGGCGC+GGG 0.519439 6_1:+95072068 Msa0899730:CDS
CCATGCCTGGAGATGCTGTA+TGG 0.520734 6_1:-95074709 None:intergenic
TTTCTGCCCAGTTTCTAAGT+CGG 0.524040 6_1:-95075927 None:intergenic
CATTTCCATTGCATCGGTGA+AGG 0.528155 6_1:-95075965 None:intergenic
GGTTGTGTTTGAGAAAGTGT+AGG 0.528230 6_1:+95070561 Msa0899730:CDS
GAAGGCATTGCCAATGCAGT+TGG 0.529622 6_1:+95072284 Msa0899730:CDS
AGTTCTGTGAGAACCATGCC+TGG 0.533618 6_1:-95074722 None:intergenic
GACAATGATAGGTGCTAACT+GGG 0.533851 6_1:+95071729 Msa0899730:CDS
CAAAGATGAACCAACTGCAT+TGG 0.539792 6_1:-95072294 None:intergenic
AGAGCTTGAAGAAAATCTAA+AGG 0.540326 6_1:+95072262 Msa0899730:CDS
ATGCACTGATATGGTATAGT+TGG 0.541778 6_1:+95071686 Msa0899730:CDS
GTTGTGTTTGAGAAAGTGTA+GGG 0.541898 6_1:+95070562 Msa0899730:CDS
TGTTTATTCAAATTACACTC+TGG 0.542244 6_1:-95070467 None:intergenic
ACTCAACAGATAAACAATGC+TGG 0.542977 6_1:+95072796 Msa0899730:intron
TCCATATTAAATATGTGGCC+TGG 0.544104 6_1:-95073119 None:intergenic
TGGCTTGGAGGAGTTATCAT+CGG 0.545655 6_1:+95071706 Msa0899730:CDS
AGAAGTTTATGTGGACATGT+TGG 0.547713 6_1:-95076190 None:intergenic
AAGAGTGAAGATGGTGGTGG+TGG 0.553759 6_1:+95070590 Msa0899730:CDS
ATGGGGAATGCTTGATTACA+TGG 0.555085 6_1:-95076309 None:intergenic
CATTGCTTGTGATGTTTGTG+AGG 0.557227 6_1:+95072346 Msa0899730:CDS
TTGGTTTCTCATAATACGCA+TGG 0.557467 6_1:-95073090 None:intergenic
ATTTCATGGATCACTATTGA+CGG 0.560581 6_1:+95074661 Msa0899730:CDS
GGTGTCCATACAGCATCTCC+AGG 0.560814 6_1:+95074704 Msa0899730:CDS
CCTTTAACGACTCGCATCCG+TGG 0.562863 6_1:-95075049 None:intergenic
AGGGCTTTCAAGAGTGAAGA+TGG 0.562950 6_1:+95070581 Msa0899730:CDS
GATTGGGCAAAGCTTTGGCG+CGG 0.566369 6_1:+95072067 Msa0899730:CDS
AGGTCGCTGGTTTGATGATG+AGG 0.567807 6_1:+95075144 Msa0899730:CDS
TCATCACTGAATTGAAGCAA+TGG 0.569274 6_1:-95072838 None:intergenic
ATTGTCTCGACAAATTTGGT+TGG 0.570081 6_1:+95073044 Msa0899730:CDS
ACCTAAACCATAAAACAAAG+TGG 0.570690 6_1:+95076157 Msa0899730:three_prime_UTR
CAGTTGCTTGCACAGACTCG+GGG 0.574028 6_1:-95072235 None:intergenic
ATTGTGACCATGATGAGCAC+TGG 0.580513 6_1:+95071442 Msa0899730:CDS
TTGGAAGATTATTGTCGCGA+AGG 0.583547 6_1:+95071754 Msa0899730:CDS
TATAACTATAAGCATCACAA+TGG 0.586854 6_1:-95076328 None:intergenic
CTTGAAGAAAATCTAAAGGA+AGG 0.588050 6_1:+95072266 Msa0899730:CDS
GATAGGTGCTAACTGGGTGT+TGG 0.588306 6_1:+95071735 Msa0899730:CDS
GGCTTCTCGAGTACAAAGGA+TGG 0.590086 6_1:-95073069 None:intergenic
ACATCTGAAATCCAATTGCA+AGG 0.591234 6_1:-95071471 None:intergenic
CCAGTTATGACAACATTACG+TGG 0.591242 6_1:-95071778 None:intergenic
TAGCTCAAATTCTTCATCTG+GGG 0.599158 6_1:+95070511 Msa0899730:CDS
TTGCTAGAACATTAGTTCCA+CGG 0.600648 6_1:+95075032 Msa0899730:CDS
TGAAGGTGGAGATAGTCAGA+TGG 0.600721 6_1:+95071663 Msa0899730:intron
GATCACTCCAGTGCTCATCA+TGG 0.601052 6_1:-95071449 None:intergenic
GGCCACATATTTAATATGGA+CGG 0.602083 6_1:+95073122 Msa0899730:CDS
TGAATGCAAAGAAATAAACT+TGG 0.602537 6_1:-95076418 None:intergenic
CCATACAGCATCTCCAGGCA+TGG 0.604098 6_1:+95074709 Msa0899730:CDS
AGCTATGGTTCTACAAAATG+TGG 0.613985 6_1:+95074629 Msa0899730:intron
ACTGGGCAGAAAACCGCGCA+CGG 0.614584 6_1:+95075938 Msa0899730:CDS
ATGGACGGTGCAGGTTCCGG+AGG 0.614873 6_1:+95073137 Msa0899730:CDS
AATACTCACACGGCTGTCAG+AGG 0.628482 6_1:-95073170 None:intergenic
CGGTGAAGGAAAACCGTGCG+CGG 0.632870 6_1:-95075951 None:intergenic
CTTGATTACATGGTGTCACG+TGG 0.644293 6_1:-95076299 None:intergenic
GTCACTGCTTGGTTACGGCG+AGG 0.648939 6_1:+95075124 Msa0899730:CDS
TTCAAGAGTGAAGATGGTGG+TGG 0.650538 6_1:+95070587 Msa0899730:CDS
GTAATGTTGTCATAACTGGA+AGG 0.653698 6_1:+95071782 Msa0899730:CDS
AGCAGACCGACTTAGAAACT+GGG 0.654775 6_1:+95075921 Msa0899730:CDS
CCGTAACCAAGCAGTGACCA+AGG 0.660846 6_1:-95075119 None:intergenic
AGTCGTTAAAGGAACAGGCA+AGG 0.664810 6_1:+95075060 Msa0899730:CDS
GCATGGCTTCTCGAGTACAA+AGG 0.668725 6_1:-95073073 None:intergenic
GTGTAATTGTTACTTCACGA+AGG 0.670168 6_1:+95072112 Msa0899730:CDS
AAGGCAAGCAAGATTCTAGG+AGG 0.670870 6_1:-95075100 None:intergenic
AAATGTACACAGAAAACACA+TGG 0.672881 6_1:+95075983 Msa0899730:CDS
GCTTTCAAGAGTGAAGATGG+TGG 0.735744 6_1:+95070584 Msa0899730:CDS
TAACTATAAGCATCACAATG+GGG 0.735871 6_1:-95076326 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAAAAAAACTTTTAAAGTT+AGG - chr6_1:95073012-95073031 None:intergenic 10.0%
!! AAATAGTAAAAAAAAAATTC+GGG - chr6_1:95073588-95073607 None:intergenic 10.0%
!!! AAATTAAAACTGAAATTTTT+CGG - chr6_1:95073616-95073635 None:intergenic 10.0%
!!! TTTAAAAAAAATAGATTTTG+AGG + chr6_1:95074058-95074077 Msa0899730:intron 10.0%
!!! ATTTAGAAAAAAATAGATTT+TGG + chr6_1:95074203-95074222 Msa0899730:intron 10.0%
!!! TTGTTAAAAAAATCATTTTT+AGG - chr6_1:95074261-95074280 None:intergenic 10.0%
!!! AAATGATTTTTTTAACAAAA+TGG + chr6_1:95074263-95074282 Msa0899730:intron 10.0%
!!! TTTATTTATTGTTGTGATTT+TGG - chr6_1:95070314-95070333 None:intergenic 15.0%
!!! TTTTATCTTAATCTTAAACA+TGG + chr6_1:95070415-95070434 Msa0899730:exon 15.0%
!!! TAATTTTAGAAATGTTTTGT+TGG + chr6_1:95070691-95070710 Msa0899730:CDS 15.0%
!!! AATTTTAGAAATGTTTTGTT+GGG + chr6_1:95070692-95070711 Msa0899730:CDS 15.0%
!! AATAAATTGAAAATAGCTTA+TGG + chr6_1:95071192-95071211 Msa0899730:intron 15.0%
!!! TTATGAAAATGAAACTATTT+TGG - chr6_1:95071276-95071295 None:intergenic 15.0%
!!! ATCTTCAAAAAATGATTTTT+AGG - chr6_1:95074155-95074174 None:intergenic 15.0%
!!! TCTATTTTTTTCTAAATACA+AGG - chr6_1:95074200-95074219 None:intergenic 15.0%
!!! AAATTTATGATAATGAAACT+TGG + chr6_1:95074464-95074483 Msa0899730:intron 15.0%
!! TATTCGTTATAAGATTAAAA+AGG - chr6_1:95074867-95074886 None:intergenic 15.0%
!! TAAACTATATTAACTTAGAT+CGG - chr6_1:95074920-95074939 None:intergenic 15.0%
!! TTATATGTATATGTATTTCA+GGG + chr6_1:95075877-95075896 Msa0899730:intron 15.0%
!!! ATTTTGTTTTTGATGATTTA+AGG - chr6_1:95076130-95076149 None:intergenic 15.0%
!! TTGAATTAATGTAACATGTT+TGG - chr6_1:95070337-95070356 None:intergenic 20.0%
!! AATAAACATAAGCTAAGAAA+TGG + chr6_1:95070482-95070501 Msa0899730:CDS 20.0%
!! TGAAACTTCAAATAGAAAAT+GGG + chr6_1:95070660-95070679 Msa0899730:CDS 20.0%
!!! ATTTTAGAAATGTTTTGTTG+GGG + chr6_1:95070693-95070712 Msa0899730:CDS 20.0%
!!! ATATCTTTTCTTAATCTGTT+TGG + chr6_1:95070813-95070832 Msa0899730:intron 20.0%
!!! ATATGTATTGGTTATTTGTT+AGG + chr6_1:95070873-95070892 Msa0899730:intron 20.0%
!!! TATGTATTGGTTATTTGTTA+GGG + chr6_1:95070874-95070893 Msa0899730:intron 20.0%
!!! CTTGTTTTCATATGTTATTT+TGG + chr6_1:95071050-95071069 Msa0899730:intron 20.0%
!! TAACTTAAGAAAACAAGTTA+TGG - chr6_1:95071135-95071154 None:intergenic 20.0%
!!! ATTTTGGTTGGAAAAATTTA+TGG - chr6_1:95071260-95071279 None:intergenic 20.0%
!! AAATGGAAATAACAAAACAA+GGG - chr6_1:95071344-95071363 None:intergenic 20.0%
!!! TCATATACACATTCTAAAAT+AGG - chr6_1:95071522-95071541 None:intergenic 20.0%
!!! ATTTTATGGAAATTTTGTGA+AGG + chr6_1:95071646-95071665 Msa0899730:intron 20.0%
!!! ATCGATTTCTAGAATATTAT+CGG - chr6_1:95071820-95071839 None:intergenic 20.0%
!!! CAATTTTGTTATTGCTTTAA+TGG + chr6_1:95072683-95072702 Msa0899730:intron 20.0%
!!! CTTTAATGGATGTTTTATAT+AGG + chr6_1:95072697-95072716 Msa0899730:intron 20.0%
!!! TTTTCTCACTATTTTCTTTT+AGG + chr6_1:95073328-95073347 Msa0899730:intron 20.0%
!!! TTTCTCACTATTTTCTTTTA+GGG + chr6_1:95073329-95073348 Msa0899730:intron 20.0%
!! CAAAAAAAAAAATAAGCCAT+GGG - chr6_1:95073530-95073549 None:intergenic 20.0%
!! ACAAAAAAAAAAATAAGCCA+TGG - chr6_1:95073531-95073550 None:intergenic 20.0%
!! TAAGGAAAAAAAAATAAGTC+AGG + chr6_1:95073731-95073750 Msa0899730:intron 20.0%
!! AAGGAAAAAAAAATAAGTCA+GGG + chr6_1:95073732-95073751 Msa0899730:intron 20.0%
!! TCAAAAAAATCCAAAACAAA+CGG + chr6_1:95074361-95074380 Msa0899730:intron 20.0%
!! TGAAACTTAAAAATAACTGA+AGG + chr6_1:95075538-95075557 Msa0899730:intron 20.0%
!! GAAACTTAAAAATAACTGAA+GGG + chr6_1:95075539-95075558 Msa0899730:intron 20.0%
!!! AAAAATGGATTTTGTACATA+TGG - chr6_1:95075789-95075808 None:intergenic 20.0%
!! GTTATATGTATATGTATTTC+AGG + chr6_1:95075876-95075895 Msa0899730:intron 20.0%
!! TATATGTATATGTATTTCAG+GGG + chr6_1:95075878-95075897 Msa0899730:intron 20.0%
!!! AAATAATCCACTTTGTTTTA+TGG - chr6_1:95076167-95076186 None:intergenic 20.0%
! TGTGAAAATATCTGATTCAT+TGG - chr6_1:95070254-95070273 None:intergenic 25.0%
! TGTTTATTCAAATTACACTC+TGG - chr6_1:95070470-95070489 None:intergenic 25.0%
!!! TTTGGTTTTGGACAAAATTT+TGG + chr6_1:95070536-95070555 Msa0899730:CDS 25.0%
! GTTGAGAAATTTGAAGAAAA+AGG + chr6_1:95070634-95070653 Msa0899730:CDS 25.0%
! GTGAAACTTCAAATAGAAAA+TGG + chr6_1:95070659-95070678 Msa0899730:CDS 25.0%
!!! TTCAAATAGAAAATGGGTTT+TGG + chr6_1:95070666-95070685 Msa0899730:CDS 25.0%
! AGCACTTATCATATATGTAT+TGG + chr6_1:95070861-95070880 Msa0899730:intron 25.0%
! GGATTAACAACTTAATTGAA+TGG + chr6_1:95070957-95070976 Msa0899730:intron 25.0%
!! CAACTTAATTGAATGGTTTT+AGG + chr6_1:95070964-95070983 Msa0899730:intron 25.0%
!!! TTTTAGGATATAAGTGCTTA+TGG + chr6_1:95070980-95070999 Msa0899730:intron 25.0%
!!! ATATGTTATTTTGGAGAGTT+TGG + chr6_1:95071059-95071078 Msa0899730:intron 25.0%
!! AATAAGCTGAAAACAACTTT+TGG + chr6_1:95071216-95071235 Msa0899730:intron 25.0%
!!! GAAAATGAAACTATTTTGGT+TGG - chr6_1:95071272-95071291 None:intergenic 25.0%
! TCAAATAAGCAATTCCAAAA+AGG + chr6_1:95071318-95071337 Msa0899730:intron 25.0%
! CAAATGGAAATAACAAAACA+AGG - chr6_1:95071345-95071364 None:intergenic 25.0%
!! CGTCAAAAAGCAAAAAATTT+TGG - chr6_1:95071845-95071864 None:intergenic 25.0%
! TATTTACACGATTATATACG+TGG + chr6_1:95071912-95071931 Msa0899730:intron 25.0%
! AACTTGGTTATATTGACATT+TGG + chr6_1:95072408-95072427 Msa0899730:CDS 25.0%
! ACTTGGTTATATTGACATTT+GGG + chr6_1:95072409-95072428 Msa0899730:CDS 25.0%
! TACAAAATCTCATTGTTAGA+CGG - chr6_1:95072952-95072971 None:intergenic 25.0%
! TATAGTAGTTTCTTATCGAA+TGG + chr6_1:95073201-95073220 Msa0899730:intron 25.0%
! ATAGTAGTTTCTTATCGAAT+GGG + chr6_1:95073202-95073221 Msa0899730:intron 25.0%
!! TCAAGTGATTAACTTTTACA+GGG - chr6_1:95073831-95073850 None:intergenic 25.0%
!! TTCAAGTGATTAACTTTTAC+AGG - chr6_1:95073830-95073849 None:intergenic 25.0%
!! AGTTGGGAAAAAAATTTTGA+AGG - chr6_1:95073561-95073580 None:intergenic 25.0%
! AAAAAATTCGGGAAAAAGTT+GGG - chr6_1:95073577-95073596 None:intergenic 25.0%
! AAAAAAATTCGGGAAAAAGT+TGG - chr6_1:95073578-95073597 None:intergenic 25.0%
! AGGAAAAAAAAATAAGTCAG+GGG + chr6_1:95073733-95073752 Msa0899730:intron 25.0%
!! TTCAAGTGATTAACTTTTAC+AGG + chr6_1:95073830-95073849 Msa0899730:intron 25.0%
!! TCAAGTGATTAACTTTTACA+GGG + chr6_1:95073831-95073850 Msa0899730:intron 25.0%
!! ACCCTTTCTTTTACAATTTT+CGG + chr6_1:95073930-95073949 Msa0899730:intron 25.0%
! TCCGAAAATTGTAAAAGAAA+GGG - chr6_1:95073934-95073953 None:intergenic 25.0%
! TTCCGAAAATTGTAAAAGAA+AGG - chr6_1:95073935-95073954 None:intergenic 25.0%
! TCAGAAACAAGGAAAAAAAT+TGG - chr6_1:95073992-95074011 None:intergenic 25.0%
!! AGAATTCATTTTCAGAAACA+AGG - chr6_1:95074003-95074022 None:intergenic 25.0%
!! TATTGAACATTTGCTTGTTT+TGG - chr6_1:95074988-95075007 None:intergenic 25.0%
!! ATGTAATGGCTATAATTTTG+AGG + chr6_1:95075168-95075187 Msa0899730:intron 25.0%
! ATCAGTACACTTTAATTACT+TGG + chr6_1:95075196-95075215 Msa0899730:intron 25.0%
! TGAAACCAAGAAATGTTAAT+GGG - chr6_1:95075335-95075354 None:intergenic 25.0%
! ATGAAACCAAGAAATGTTAA+TGG - chr6_1:95075336-95075355 None:intergenic 25.0%
! ATAACTATAAGCATCACAAT+GGG - chr6_1:95076330-95076349 None:intergenic 25.0%
! TATAACTATAAGCATCACAA+TGG - chr6_1:95076331-95076350 None:intergenic 25.0%
! TGAATGCAAAGAAATAAACT+TGG - chr6_1:95076421-95076440 None:intergenic 25.0%
! CATAAGCTAAGAAATGGATT+TGG + chr6_1:95070488-95070507 Msa0899730:CDS 30.0%
!! GTTTTGGACAAAATTTTGGT+GGG + chr6_1:95070540-95070559 Msa0899730:CDS 30.0%
! TTTGTTGGGGAATTTTATGA+TGG + chr6_1:95070706-95070725 Msa0899730:CDS 30.0%
! TTGTTGGGGAATTTTATGAT+GGG + chr6_1:95070707-95070726 Msa0899730:CDS 30.0%
!!! TTTTATGATGGGTTCTAAGT+TGG + chr6_1:95070718-95070737 Msa0899730:CDS 30.0%
ATCATTCTTGATTCTCTGTT+TGG + chr6_1:95070936-95070955 Msa0899730:intron 30.0%
! AACAAGATTGCTGTTCAAAT+TGG + chr6_1:95071412-95071431 Msa0899730:intron 30.0%
! AAACTTGTTTACACTACTGT+CGG - chr6_1:95071571-95071590 None:intergenic 30.0%
!!! CATATGTGACGTTGATTTTA+TGG + chr6_1:95071632-95071651 Msa0899730:intron 30.0%
! TTATGGAAATTTTGTGAAGG+TGG + chr6_1:95071649-95071668 Msa0899730:intron 30.0%
TACTACATAGAAGAATGCAT+AGG - chr6_1:95071870-95071889 None:intergenic 30.0%
! TAAATTTTGTGTGCAGTACA+AGG + chr6_1:95072043-95072062 Msa0899730:intron 30.0%
! AAATTTTGTGTGCAGTACAA+GGG + chr6_1:95072044-95072063 Msa0899730:intron 30.0%
AGAGCTTGAAGAAAATCTAA+AGG + chr6_1:95072262-95072281 Msa0899730:CDS 30.0%
CTTGAAGAAAATCTAAAGGA+AGG + chr6_1:95072266-95072285 Msa0899730:CDS 30.0%
TCATAGGTTTAGCATCATTT+AGG + chr6_1:95072620-95072639 Msa0899730:intron 30.0%
!!! AGCATCATTTAGGTTGTTTT+TGG + chr6_1:95072630-95072649 Msa0899730:intron 30.0%
AACAATGCTGGAACAAATAA+AGG + chr6_1:95072808-95072827 Msa0899730:CDS 30.0%
!!! TTTTAAAGTTAGGACGAAGA+TGG - chr6_1:95073002-95073021 None:intergenic 30.0%
ATAGATTGTCTCGACAAATT+TGG + chr6_1:95073040-95073059 Msa0899730:intron 30.0%
! TTTTCGTCCCTGTAATTATA+GGG + chr6_1:95073362-95073381 Msa0899730:intron 30.0%
TCAAATGCCCTATAATTACA+GGG - chr6_1:95073372-95073391 None:intergenic 30.0%
TTCAAATGCCCTATAATTAC+AGG - chr6_1:95073373-95073392 None:intergenic 30.0%
TTCAAATGGCCTATAATTAC+AGG + chr6_1:95073890-95073909 Msa0899730:intron 30.0%
TCAAATGGCCTATAATTACA+GGG + chr6_1:95073891-95073910 Msa0899730:intron 30.0%
TATGACAGAGAGAAGATAAA+GGG - chr6_1:95074388-95074407 None:intergenic 30.0%
TTATGACAGAGAGAAGATAA+AGG - chr6_1:95074389-95074408 None:intergenic 30.0%
GTTGCTTGAAATTGCTAATA+AGG - chr6_1:95074442-95074461 None:intergenic 30.0%
!! ATGTTTTCTGAAAGTAAGCA+AGG + chr6_1:95074489-95074508 Msa0899730:intron 30.0%
TAGCTACACAACAAATGAAA+AGG - chr6_1:95074614-95074633 None:intergenic 30.0%
!! TTTCATTTGTTGTGTAGCTA+TGG + chr6_1:95074614-95074633 Msa0899730:intron 30.0%
ATTTCATGGATCACTATTGA+CGG + chr6_1:95074661-95074680 Msa0899730:CDS 30.0%
! TTCTCACAGAACTTCTTTTA+AGG + chr6_1:95074732-95074751 Msa0899730:CDS 30.0%
GTGAAAAAACAATACACGTT+TGG - chr6_1:95074772-95074791 None:intergenic 30.0%
TTTACGACAGAAAATGAAGT+TGG - chr6_1:95074827-95074846 None:intergenic 30.0%
!! TTTGATGATGAGGTATGTAA+TGG + chr6_1:95075154-95075173 Msa0899730:intron 30.0%
CTGAAAAGGACTAAAATGAA+AGG - chr6_1:95075297-95075316 None:intergenic 30.0%
GTCTGATATTTGTAACGTAA+GGG - chr6_1:95075365-95075384 None:intergenic 30.0%
TGTCTGATATTTGTAACGTA+AGG - chr6_1:95075366-95075385 None:intergenic 30.0%
!!! TTCCTTCTTCTTTTTGAGTT+AGG - chr6_1:95075474-95075493 None:intergenic 30.0%
!! ACTAGCCTAAATTTCACTTT+TGG - chr6_1:95075566-95075585 None:intergenic 30.0%
ATTTCATAACCACGGAAAAA+TGG - chr6_1:95075804-95075823 None:intergenic 30.0%
GTTCAACAATTTCATAACCA+CGG - chr6_1:95075812-95075831 None:intergenic 30.0%
AAATGTACACAGAAAACACA+TGG + chr6_1:95075983-95076002 Msa0899730:CDS 30.0%
TTCAATAAATTGCATGCATC+AGG - chr6_1:95076090-95076109 None:intergenic 30.0%
ATGCATGCAATTTATTGAAG+AGG + chr6_1:95076091-95076110 Msa0899730:three_prime_UTR 30.0%
ACCTAAACCATAAAACAAAG+TGG + chr6_1:95076157-95076176 Msa0899730:three_prime_UTR 30.0%
!!! TCCACTTTGTTTTATGGTTT+AGG - chr6_1:95076161-95076180 None:intergenic 30.0%
ACTGTTTGAAGAAGTTTATG+TGG - chr6_1:95076202-95076221 None:intergenic 30.0%
! GTTGTTTGTGTAATCTTTTG+TGG + chr6_1:95076243-95076262 Msa0899730:three_prime_UTR 30.0%
TAACTATAAGCATCACAATG+GGG - chr6_1:95076329-95076348 None:intergenic 30.0%
GTAGCTCAAATTCTTCATCT+GGG + chr6_1:95070510-95070529 Msa0899730:CDS 35.0%
TAGCTCAAATTCTTCATCTG+GGG + chr6_1:95070511-95070530 Msa0899730:CDS 35.0%
!!! GGTTTTGGACAAAATTTTGG+TGG + chr6_1:95070539-95070558 Msa0899730:CDS 35.0%
! GTTGTGTTTGAGAAAGTGTA+GGG + chr6_1:95070562-95070581 Msa0899730:CDS 35.0%
AGTATAGACAAGCTGTTGTT+AGG + chr6_1:95070747-95070766 Msa0899730:CDS 35.0%
GTATAGACAAGCTGTTGTTA+GGG + chr6_1:95070748-95070767 Msa0899730:CDS 35.0%
!! GGTTGATGAAGTTCTATCTA+AGG + chr6_1:95070769-95070788 Msa0899730:CDS 35.0%
!! GTTATTTGTTAGGGTTGATG+AGG + chr6_1:95070883-95070902 Msa0899730:intron 35.0%
! TAACAAAACAAGGGCCTTTT+TGG - chr6_1:95071335-95071354 None:intergenic 35.0%
AACATTCAACACAGCACAAA+TGG - chr6_1:95071361-95071380 None:intergenic 35.0%
! ACATCTGAAATCCAATTGCA+AGG - chr6_1:95071474-95071493 None:intergenic 35.0%
! ACATATGATATGAGGCATCT+TGG - chr6_1:95071619-95071638 None:intergenic 35.0%
TCAACGTCACATATGATATG+AGG - chr6_1:95071627-95071646 None:intergenic 35.0%
! ATGCACTGATATGGTATAGT+TGG + chr6_1:95071686-95071705 Msa0899730:CDS 35.0%
GTAATGTTGTCATAACTGGA+AGG + chr6_1:95071782-95071801 Msa0899730:CDS 35.0%
! AATTTTGTGTGCAGTACAAG+GGG + chr6_1:95072045-95072064 Msa0899730:intron 35.0%
! GTGTAATTGTTACTTCACGA+AGG + chr6_1:95072112-95072131 Msa0899730:CDS 35.0%
! TAATTGTTACTTCACGAAGG+TGG + chr6_1:95072115-95072134 Msa0899730:intron 35.0%
CTTTCTCAAGCAAAAGTTGT+AGG + chr6_1:95072323-95072342 Msa0899730:CDS 35.0%
TATTGACATTTGGGTAAGTG+TGG + chr6_1:95072418-95072437 Msa0899730:intron 35.0%
GTCAGTATTAGTATCGTGTT+CGG + chr6_1:95072587-95072606 Msa0899730:intron 35.0%
GATGCTAAACCTATGAAACA+CGG - chr6_1:95072616-95072635 None:intergenic 35.0%
!! TTTTTGGCACACTAGCATAA+AGG + chr6_1:95072646-95072665 Msa0899730:intron 35.0%
ATTCCTTCTTTATTGCTGTC+TGG + chr6_1:95072720-95072739 Msa0899730:intron 35.0%
AAACCAGACAGCAATAAAGA+AGG - chr6_1:95072726-95072745 None:intergenic 35.0%
ACTCAACAGATAAACAATGC+TGG + chr6_1:95072796-95072815 Msa0899730:intron 35.0%
TCATCACTGAATTGAAGCAA+TGG - chr6_1:95072841-95072860 None:intergenic 35.0%
ATTGTCTCGACAAATTTGGT+TGG + chr6_1:95073044-95073063 Msa0899730:CDS 35.0%
TTGGTTTCTCATAATACGCA+TGG - chr6_1:95073093-95073112 None:intergenic 35.0%
TCCATATTAAATATGTGGCC+TGG - chr6_1:95073122-95073141 None:intergenic 35.0%
GGCCACATATTTAATATGGA+CGG + chr6_1:95073122-95073141 Msa0899730:CDS 35.0%
CACCGTCCATATTAAATATG+TGG - chr6_1:95073127-95073146 None:intergenic 35.0%
ATATTTAATATGGACGGTGC+AGG + chr6_1:95073128-95073147 Msa0899730:CDS 35.0%
TAGTCAAGAGAATACTCACA+CGG - chr6_1:95073183-95073202 None:intergenic 35.0%
!! ATTCCACCGAGCTTTATTTA+GGG + chr6_1:95073237-95073256 Msa0899730:intron 35.0%
CATGATCCCTAAATAAAGCT+CGG - chr6_1:95073246-95073265 None:intergenic 35.0%
! CTTTTCGTCCCTGTAATTAT+AGG + chr6_1:95073361-95073380 Msa0899730:intron 35.0%
! AACTTTTACAGGGACGAAAT+GGG - chr6_1:95073841-95073860 None:intergenic 35.0%
! TAACTTTTACAGGGACGAAA+TGG - chr6_1:95073840-95073859 None:intergenic 35.0%
!!! ATTTTGGTAATTTGCTGACG+TGG - chr6_1:95073778-95073797 None:intergenic 35.0%
ACGTCAGCAAATTACCAAAA+TGG + chr6_1:95073484-95073503 Msa0899730:intron 35.0%
AGCAAATTACCAAAATGGCA+TGG + chr6_1:95073489-95073508 Msa0899730:intron 35.0%
GCAAATTACCAAAATGGCAT+GGG + chr6_1:95073490-95073509 Msa0899730:intron 35.0%
GCAAATTACCAAAATGGCAT+GGG - chr6_1:95073490-95073509 None:intergenic 35.0%
AGCAAATTACCAAAATGGCA+TGG - chr6_1:95073489-95073508 None:intergenic 35.0%
ACGTCAGCAAATTACCAAAA+TGG - chr6_1:95073484-95073503 None:intergenic 35.0%
!!! ATTTTGGTAATTTGCTGACG+TGG + chr6_1:95073778-95073797 Msa0899730:intron 35.0%
! TAACTTTTACAGGGACGAAA+TGG + chr6_1:95073840-95073859 Msa0899730:intron 35.0%
! AACTTTTACAGGGACGAAAT+GGG + chr6_1:95073841-95073860 Msa0899730:intron 35.0%
! CTTTTCGTCCCTGTAATTAT+AGG - chr6_1:95073361-95073380 None:intergenic 35.0%
! TTCTCCCAAACTAATCCTTT+TGG + chr6_1:95074019-95074038 Msa0899730:intron 35.0%
! TCTCCCAAACTAATCCTTTT+GGG + chr6_1:95074020-95074039 Msa0899730:intron 35.0%
!! ACACCCAAAAGGATTAGTTT+GGG - chr6_1:95074026-95074045 None:intergenic 35.0%
AGAACACTCACTCATAGATA+CGG - chr6_1:95074549-95074568 None:intergenic 35.0%
TGAGTGTTCTTCAAAAGTCA+TGG + chr6_1:95074559-95074578 Msa0899730:intron 35.0%
! AGCTATGGTTCTACAAAATG+TGG + chr6_1:95074629-95074648 Msa0899730:intron 35.0%
GTGATCCATGAAATTGTCTA+AGG - chr6_1:95074655-95074674 None:intergenic 35.0%
!!! ACGTGTATTGTTTTTTCACG+TGG + chr6_1:95074773-95074792 Msa0899730:intron 35.0%
TGGTAATTCCTACAGAAGAT+TGG - chr6_1:95074807-95074826 None:intergenic 35.0%
AATGTTCTAGCAACAGTTTC+AGG - chr6_1:95075025-95075044 None:intergenic 35.0%
TTGCTAGAACATTAGTTCCA+CGG + chr6_1:95075032-95075051 Msa0899730:CDS 35.0%
CATCTTCGAATATAGTAGTC+AGG + chr6_1:95075239-95075258 Msa0899730:intron 35.0%
GTCAGGCTAAATTACACTTT+AGG + chr6_1:95075256-95075275 Msa0899730:intron 35.0%
CAAAGTGGTTGTAACTGAAA+AGG - chr6_1:95075311-95075330 None:intergenic 35.0%
! CTTTTCAGTTACAACCACTT+TGG + chr6_1:95075309-95075328 Msa0899730:intron 35.0%
TTTGGCCCATTAACATTTCT+TGG + chr6_1:95075327-95075346 Msa0899730:intron 35.0%
TCCGTAAAATGTTTCCTATG+CGG + chr6_1:95075418-95075437 Msa0899730:intron 35.0%
AGGGACCAAAAGTGAAATTT+AGG + chr6_1:95075558-95075577 Msa0899730:intron 35.0%
TTACCTATGAATCACTGACA+CGG + chr6_1:95075588-95075607 Msa0899730:intron 35.0%
!! GTACAAAATCCATTTTTCCG+TGG + chr6_1:95075792-95075811 Msa0899730:intron 35.0%
TGTGTACATTTCCATTGCAT+CGG - chr6_1:95075974-95075993 None:intergenic 35.0%
AGAAGTTTATGTGGACATGT+TGG - chr6_1:95076193-95076212 None:intergenic 35.0%
GGTAGCTCAAATTCTTCATC+TGG + chr6_1:95070509-95070528 Msa0899730:CDS 40.0%
! AATTCTTCATCTGGGGTGTT+TGG + chr6_1:95070518-95070537 Msa0899730:CDS 40.0%
! GGTTGTGTTTGAGAAAGTGT+AGG + chr6_1:95070561-95070580 Msa0899730:CDS 40.0%
GCAATTGGATTTCAGATGTC+AGG + chr6_1:95071475-95071494 Msa0899730:CDS 40.0%
TTGGATTTCAGATGTCAGGT+TGG + chr6_1:95071479-95071498 Msa0899730:intron 40.0%
CTGATATGGTATAGTTGGCT+TGG + chr6_1:95071691-95071710 Msa0899730:CDS 40.0%
!! ATATGGTATAGTTGGCTTGG+AGG + chr6_1:95071694-95071713 Msa0899730:CDS 40.0%
GTTATCATCGGGACAATGAT+AGG + chr6_1:95071718-95071737 Msa0899730:CDS 40.0%
GACAATGATAGGTGCTAACT+GGG + chr6_1:95071729-95071748 Msa0899730:CDS 40.0%
TTGGAAGATTATTGTCGCGA+AGG + chr6_1:95071754-95071773 Msa0899730:CDS 40.0%
CCAGTTATGACAACATTACG+TGG - chr6_1:95071781-95071800 None:intergenic 40.0%
CCACGTAATGTTGTCATAAC+TGG + chr6_1:95071778-95071797 Msa0899730:CDS 40.0%
CAAAGATGAACCAACTGCAT+TGG - chr6_1:95072297-95072316 None:intergenic 40.0%
CATTGCTTGTGATGTTTGTG+AGG + chr6_1:95072346-95072365 Msa0899730:CDS 40.0%
GGCTAATGATGTTCAGAGAT+TGG + chr6_1:95072367-95072386 Msa0899730:CDS 40.0%
TCGAATGTAACCACATGCAT+CGG - chr6_1:95072527-95072546 None:intergenic 40.0%
CAGTGATGAAGACATCAAAC+AGG + chr6_1:95072852-95072871 Msa0899730:CDS 40.0%
ATTAAATATGTGGCCTGGCT+TGG - chr6_1:95073117-95073136 None:intergenic 40.0%
GCCAGGCCACATATTTAATA+TGG + chr6_1:95073118-95073137 Msa0899730:CDS 40.0%
GTAGTTTCTTATCGAATGGG+AGG + chr6_1:95073205-95073224 Msa0899730:intron 40.0%
!! CATTCCACCGAGCTTTATTT+AGG + chr6_1:95073236-95073255 Msa0899730:intron 40.0%
TGACGTGGCAGTGATTAAAA+GGG - chr6_1:95073793-95073812 None:intergenic 40.0%
GGAAATGACGAAAATACCCA+TGG + chr6_1:95073511-95073530 Msa0899730:intron 40.0%
!! CATCATTTCCCATGCCATTT+TGG + chr6_1:95073762-95073781 Msa0899730:intron 40.0%
TGACGTGGCAGTGATTAAAA+GGG + chr6_1:95073793-95073812 Msa0899730:intron 40.0%
CTCAGGGACGAAAATTCAAA+TGG + chr6_1:95073876-95073895 Msa0899730:intron 40.0%
!! CACACCCAAAAGGATTAGTT+TGG - chr6_1:95074027-95074046 None:intergenic 40.0%
CTGAAACAAACACACCCAAA+AGG - chr6_1:95074037-95074056 None:intergenic 40.0%
TACAAGGAGCTCAAGTGTAA+GGG - chr6_1:95074184-95074203 None:intergenic 40.0%
ATACAAGGAGCTCAAGTGTA+AGG - chr6_1:95074185-95074204 None:intergenic 40.0%
! GATAAAGGGTCCGTTTGTTT+TGG - chr6_1:95074374-95074393 None:intergenic 40.0%
GAACACTCACTCATAGATAC+GGG - chr6_1:95074548-95074567 None:intergenic 40.0%
! TGTGGCCTTAGACAATTTCA+TGG + chr6_1:95074647-95074666 Msa0899730:CDS 40.0%
ACTGCTTTCCAATCTTCTGT+AGG + chr6_1:95074796-95074815 Msa0899730:intron 40.0%
AGGAGGAGTCAAGTAATTGA+TGG - chr6_1:95075086-95075105 None:intergenic 40.0%
! GAAATGTTAATGGGCCAAAG+TGG - chr6_1:95075326-95075345 None:intergenic 40.0%
! GCCGCATAGGAAACATTTTA+CGG - chr6_1:95075422-95075441 None:intergenic 40.0%
! TCCTATGCGGCATTATGTTT+TGG + chr6_1:95075431-95075450 Msa0899730:intron 40.0%
TCCAAAACATAATGCCGCAT+AGG - chr6_1:95075435-95075454 None:intergenic 40.0%
!! TGTTTTGGACCTTGCTGATT+AGG + chr6_1:95075446-95075465 Msa0899730:intron 40.0%
CGCCTAACTCAAAAAGAAGA+AGG + chr6_1:95075469-95075488 Msa0899730:intron 40.0%
TGTTGTGTCGTGTTAAACAC+TGG + chr6_1:95075668-95075687 Msa0899730:intron 40.0%
TTTCTGCCCAGTTTCTAAGT+CGG - chr6_1:95075930-95075949 None:intergenic 40.0%
GCATCAGGATATTATGTTCC+AGG - chr6_1:95076075-95076094 None:intergenic 40.0%
ATGGGGAATGCTTGATTACA+TGG - chr6_1:95076312-95076331 None:intergenic 40.0%
!! TCATCTGGGGTGTTTGGTTT+TGG + chr6_1:95070524-95070543 Msa0899730:CDS 45.0%
AGGGCTTTCAAGAGTGAAGA+TGG + chr6_1:95070581-95070600 Msa0899730:CDS 45.0%
GCTTTCAAGAGTGAAGATGG+TGG + chr6_1:95070584-95070603 Msa0899730:CDS 45.0%
! TTCAAGAGTGAAGATGGTGG+TGG + chr6_1:95070587-95070606 Msa0899730:CDS 45.0%
ATTGTGACCATGATGAGCAC+TGG + chr6_1:95071442-95071461 Msa0899730:CDS 45.0%
ACTGGAGTGATCCTTGCAAT+TGG + chr6_1:95071460-95071479 Msa0899730:CDS 45.0%
TGAAGGTGGAGATAGTCAGA+TGG + chr6_1:95071663-95071682 Msa0899730:intron 45.0%
! GTCAGATGGATGCACTGATA+TGG + chr6_1:95071677-95071696 Msa0899730:CDS 45.0%
! TGGCTTGGAGGAGTTATCAT+CGG + chr6_1:95071706-95071725 Msa0899730:CDS 45.0%
GGACAATGATAGGTGCTAAC+TGG + chr6_1:95071728-95071747 Msa0899730:CDS 45.0%
TATACGTGGTGCGCTGTATT+TGG + chr6_1:95071926-95071945 Msa0899730:intron 45.0%
! AACTTTGCTGTCAGCGAACT+TGG + chr6_1:95072392-95072411 Msa0899730:CDS 45.0%
!! GCTGTCTGGTTTCTGCTTTT+TGG + chr6_1:95072734-95072753 Msa0899730:intron 45.0%
ATGAGAAACCAAACCAAGCC+AGG + chr6_1:95073101-95073120 Msa0899730:CDS 45.0%
GATCCCTAAATAAAGCTCGG+TGG - chr6_1:95073243-95073262 None:intergenic 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG - chr6_1:95073860-95073879 None:intergenic 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG - chr6_1:95073859-95073878 None:intergenic 45.0%
! TTTTACAGGGACGAAATGGG+AGG - chr6_1:95073844-95073863 None:intergenic 45.0%
GACGTGGCAGTGATTAAAAG+GGG - chr6_1:95073794-95073813 None:intergenic 45.0%
CTGACGTGGCAGTGATTAAA+AGG - chr6_1:95073792-95073811 None:intergenic 45.0%
!! CGTCATTTCCCATGCCATTT+TGG - chr6_1:95073501-95073520 None:intergenic 45.0%
CTGACGTGGCAGTGATTAAA+AGG + chr6_1:95073792-95073811 Msa0899730:intron 45.0%
GACGTGGCAGTGATTAAAAG+GGG + chr6_1:95073794-95073813 Msa0899730:intron 45.0%
! TTTTACAGGGACGAAATGGG+AGG + chr6_1:95073844-95073863 Msa0899730:intron 45.0%
! ATGGGAGGATTAGTAAGCTC+AGG + chr6_1:95073859-95073878 Msa0899730:intron 45.0%
! TGGGAGGATTAGTAAGCTCA+GGG + chr6_1:95073860-95073879 Msa0899730:intron 45.0%
!!! GTGTCGCTTTTTTTGCACAG+TGG + chr6_1:95074953-95074972 Msa0899730:intron 45.0%
ATGCGAGTCGTTAAAGGAAC+AGG + chr6_1:95075055-95075074 Msa0899730:CDS 45.0%
AGTCGTTAAAGGAACAGGCA+AGG + chr6_1:95075060-95075079 Msa0899730:CDS 45.0%
AAGGCAAGCAAGATTCTAGG+AGG - chr6_1:95075103-95075122 None:intergenic 45.0%
TCCTAGAATCTTGCTTGCCT+TGG + chr6_1:95075102-95075121 Msa0899730:CDS 45.0%
ACCAAGGCAAGCAAGATTCT+AGG - chr6_1:95075106-95075125 None:intergenic 45.0%
TGTCCGTGTCAGTGATTCAT+AGG - chr6_1:95075594-95075613 None:intergenic 45.0%
GTTTCTAAGTCGGTCTGCTT+CGG - chr6_1:95075920-95075939 None:intergenic 45.0%
! AAGCAGACCGACTTAGAAAC+TGG + chr6_1:95075920-95075939 Msa0899730:CDS 45.0%
! AGCAGACCGACTTAGAAACT+GGG + chr6_1:95075921-95075940 Msa0899730:CDS 45.0%
! GTTTTCCTTCACCGATGCAA+TGG + chr6_1:95075960-95075979 Msa0899730:CDS 45.0%
! CATTTCCATTGCATCGGTGA+AGG - chr6_1:95075968-95075987 None:intergenic 45.0%
!! CTTGATTACATGGTGTCACG+TGG - chr6_1:95076302-95076321 None:intergenic 45.0%
!! AAAATAGTAAAAAAAAAATT+CGG - chr6_1:95073589-95073608 None:intergenic 5.0%
!! TTAAAAATCATAAAAAATTT+CGG - chr6_1:95073652-95073671 None:intergenic 5.0%
!!! AAATTTTGAAATTTTTTTTA+AGG + chr6_1:95073713-95073732 Msa0899730:intron 5.0%
!! AAGAGTGAAGATGGTGGTGG+TGG + chr6_1:95070590-95070609 Msa0899730:CDS 50.0%
GATCACTCCAGTGCTCATCA+TGG - chr6_1:95071452-95071471 None:intergenic 50.0%
GGCTTGGAGGAGTTATCATC+GGG + chr6_1:95071707-95071726 Msa0899730:CDS 50.0%
GATAGGTGCTAACTGGGTGT+TGG + chr6_1:95071735-95071754 Msa0899730:CDS 50.0%
TGTGTGCAGTACAAGGGGAT+TGG + chr6_1:95072050-95072069 Msa0899730:intron 50.0%
GTGTGCAGTACAAGGGGATT+GGG + chr6_1:95072051-95072070 Msa0899730:intron 50.0%
AAGGGGATTGGGCAAAGCTT+TGG + chr6_1:95072062-95072081 Msa0899730:CDS 50.0%
CCTTCACAGAATTCGAGAGC+GGG - chr6_1:95072212-95072231 None:intergenic 50.0%
GCCTTCACAGAATTCGAGAG+CGG - chr6_1:95072213-95072232 None:intergenic 50.0%
ACAGTTGCTTGCACAGACTC+GGG - chr6_1:95072239-95072258 None:intergenic 50.0%
CACAGTTGCTTGCACAGACT+CGG - chr6_1:95072240-95072259 None:intergenic 50.0%
!! GAAGGCATTGCCAATGCAGT+TGG + chr6_1:95072284-95072303 Msa0899730:CDS 50.0%
GCATTAGACACCGATGCATG+TGG + chr6_1:95072514-95072533 Msa0899730:intron 50.0%
!! GTTCGGTGTCCGTGTTTCAT+AGG + chr6_1:95072604-95072623 Msa0899730:intron 50.0%
GGCTTCTCGAGTACAAAGGA+TGG - chr6_1:95073072-95073091 None:intergenic 50.0%
GCATGGCTTCTCGAGTACAA+AGG - chr6_1:95073076-95073095 None:intergenic 50.0%
!! ATATGTGGCCTGGCTTGGTT+TGG - chr6_1:95073112-95073131 None:intergenic 50.0%
AATATGGACGGTGCAGGTTC+CGG + chr6_1:95073134-95073153 Msa0899730:CDS 50.0%
AATACTCACACGGCTGTCAG+AGG - chr6_1:95073173-95073192 None:intergenic 50.0%
GCAGTGATTAAAAGGGGCGA+GGG - chr6_1:95073800-95073819 None:intergenic 50.0%
GCAGTGATTAAAAGGGGCGA+GGG + chr6_1:95073800-95073819 Msa0899730:intron 50.0%
GAGTGCAAGCGATCGAAAGT+AGG + chr6_1:95074683-95074702 Msa0899730:CDS 50.0%
AGTTCTGTGAGAACCATGCC+TGG - chr6_1:95074725-95074744 None:intergenic 50.0%
CCTTGGTCACTGCTTGGTTA+CGG + chr6_1:95075119-95075138 Msa0899730:CDS 50.0%
!! AGGTCGCTGGTTTGATGATG+AGG + chr6_1:95075144-95075163 Msa0899730:CDS 50.0%
AGTTAGGCGCCTAATCAGCA+AGG - chr6_1:95075458-95075477 None:intergenic 50.0%
TGAATCACTGACACGGACAC+AGG + chr6_1:95075595-95075614 Msa0899730:intron 50.0%
AGCACTAGCAGCAATTTGCC+TGG + chr6_1:95076054-95076073 Msa0899730:CDS 50.0%
!! AGTGAAGATGGTGGTGGTGG+TGG + chr6_1:95070593-95070612 Msa0899730:CDS 55.0%
!! TGGTGGTGGTGGTGGTTTGA+AGG + chr6_1:95070604-95070623 Msa0899730:CDS 55.0%
! GATTGGGCAAAGCTTTGGCG+CGG + chr6_1:95072067-95072086 Msa0899730:CDS 55.0%
! ATTGGGCAAAGCTTTGGCGC+GGG + chr6_1:95072068-95072087 Msa0899730:CDS 55.0%
GGCGCGGGAGTTTCTTCTTT+CGG + chr6_1:95072083-95072102 Msa0899730:CDS 55.0%
GCGCGGGAGTTTCTTCTTTC+GGG + chr6_1:95072084-95072103 Msa0899730:CDS 55.0%
CCCGCTCTCGAATTCTGTGA+AGG + chr6_1:95072209-95072228 Msa0899730:intron 55.0%
CAGTTGCTTGCACAGACTCG+GGG - chr6_1:95072238-95072257 None:intergenic 55.0%
GGCAGTGATTAAAAGGGGCG+AGG - chr6_1:95073799-95073818 None:intergenic 55.0%
GGCAGTGATTAAAAGGGGCG+AGG + chr6_1:95073799-95073818 Msa0899730:intron 55.0%
GGTGTCCATACAGCATCTCC+AGG + chr6_1:95074704-95074723 Msa0899730:CDS 55.0%
CCATGCCTGGAGATGCTGTA+TGG - chr6_1:95074712-95074731 None:intergenic 55.0%
CCATACAGCATCTCCAGGCA+TGG + chr6_1:95074709-95074728 Msa0899730:CDS 55.0%
CCTTTAACGACTCGCATCCG+TGG - chr6_1:95075052-95075071 None:intergenic 55.0%
CCACGGATGCGAGTCGTTAA+AGG + chr6_1:95075049-95075068 Msa0899730:CDS 55.0%
TGCTTGCCTTGGTCACTGCT+TGG + chr6_1:95075113-95075132 Msa0899730:CDS 55.0%
CCGTAACCAAGCAGTGACCA+AGG - chr6_1:95075122-95075141 None:intergenic 55.0%
!! GAAGATGGTGGTGGTGGTGG+TGG + chr6_1:95070596-95070615 Msa0899730:CDS 60.0%
! CAGAGGTGTGCTAGAGCCTC+CGG - chr6_1:95073156-95073175 None:intergenic 60.0%
GTCACTGCTTGGTTACGGCG+AGG + chr6_1:95075124-95075143 Msa0899730:CDS 60.0%
ACTGGGCAGAAAACCGCGCA+CGG + chr6_1:95075938-95075957 Msa0899730:CDS 60.0%
CGGTGAAGGAAAACCGTGCG+CGG - chr6_1:95075954-95075973 None:intergenic 60.0%
ATGGACGGTGCAGGTTCCGG+AGG + chr6_1:95073137-95073156 Msa0899730:CDS 65.0%
CTTGGTTACGGCGAGGTCGC+TGG + chr6_1:95075131-95075150 Msa0899730:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 95070238 95076464 95070238 ID=Msa0899730;Name=Msa0899730
chr6_1 mRNA 95070238 95076464 95070238 ID=Msa0899730-mRNA-1;Parent=Msa0899730;Name=Msa0899730-mRNA-1;_AED=0.03;_eAED=0.03;_QI=196|1|1|1|1|1|10|381|517
chr6_1 exon 95070238 95070790 95070238 ID=Msa0899730-mRNA-1:exon:16278;Parent=Msa0899730-mRNA-1
chr6_1 exon 95071418 95071496 95071418 ID=Msa0899730-mRNA-1:exon:16279;Parent=Msa0899730-mRNA-1
chr6_1 exon 95071668 95071803 95071668 ID=Msa0899730-mRNA-1:exon:16280;Parent=Msa0899730-mRNA-1
chr6_1 exon 95072059 95072133 95072059 ID=Msa0899730-mRNA-1:exon:16281;Parent=Msa0899730-mRNA-1
chr6_1 exon 95072235 95072430 95072235 ID=Msa0899730-mRNA-1:exon:16282;Parent=Msa0899730-mRNA-1
chr6_1 exon 95072805 95072873 95072805 ID=Msa0899730-mRNA-1:exon:16283;Parent=Msa0899730-mRNA-1
chr6_1 exon 95073044 95073183 95073044 ID=Msa0899730-mRNA-1:exon:16284;Parent=Msa0899730-mRNA-1
chr6_1 exon 95074631 95074753 95074631 ID=Msa0899730-mRNA-1:exon:16285;Parent=Msa0899730-mRNA-1
chr6_1 exon 95074973 95075165 95074973 ID=Msa0899730-mRNA-1:exon:16286;Parent=Msa0899730-mRNA-1
chr6_1 exon 95075898 95076464 95075898 ID=Msa0899730-mRNA-1:exon:16287;Parent=Msa0899730-mRNA-1
chr6_1 five_prime_UTR 95070238 95070433 95070238 ID=Msa0899730-mRNA-1:five_prime_utr;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95070434 95070790 95070434 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95071418 95071496 95071418 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95071668 95071803 95071668 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95072059 95072133 95072059 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95072235 95072430 95072235 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95072805 95072873 95072805 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95073044 95073183 95073044 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95074631 95074753 95074631 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95074973 95075165 95074973 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 CDS 95075898 95076083 95075898 ID=Msa0899730-mRNA-1:cds;Parent=Msa0899730-mRNA-1
chr6_1 three_prime_UTR 95076084 95076464 95076084 ID=Msa0899730-mRNA-1:three_prime_utr;Parent=Msa0899730-mRNA-1
Gene Sequence

>Msa0899730

ATGGCTACTACAATTGTTAAGCTTCAAGTTTTTCCAGAGTGTAATTTGAATAAACATAAGCTAAGAAATGGATTTGGTAGCTCAAATTCTTCATCTGGGGTGTTTGGTTTTGGACAAAATTTTGGTGGGTTGTGTTTGAGAAAGTGTAGGGCTTTCAAGAGTGAAGATGGTGGTGGTGGTGGTGGTTTGAAGGAGAAAAAGTTGAGAAATTTGAAGAAAAAGGAAGTGAAACTTCAAATAGAAAATGGGTTTTGGAGTAATTTTAGAAATGTTTTGTTGGGGAATTTTATGATGGGTTCTAAGTTGGATGATGAGTATAGACAAGCTGTTGTTAGGGTTGATGAAGTTCTATCTAAGATTGCTGTTCAAATTGGAAGATATATTGTGACCATGATGAGCACTGGAGTGATCCTTGCAATTGGATTTCAGATGTCAGGTGGAGATAGTCAGATGGATGCACTGATATGGTATAGTTGGCTTGGAGGAGTTATCATCGGGACAATGATAGGTGCTAACTGGGTGTTGGAAGATTATTGTCGCGAAGGTCCACGTAATGTTGTCATAACTGGAAGTACAAGGGGATTGGGCAAAGCTTTGGCGCGGGAGTTTCTTCTTTCGGGAGATCGTGTAATTGTTACTTCACGAAGCCCCGAGTCTGTGCAAGCAACTGTGAAAGAGCTTGAAGAAAATCTAAAGGAAGGCATTGCCAATGCAGTTGGTTCATCTTTGACAAAGCTTTCTCAAGCAAAAGTTGTAGGCATTGCTTGTGATGTTTGTGAGGCTAATGATGTTCAGAGATTGGCAAACTTTGCTGTCAGCGAACTTGGTTATATTGACATTTGGATAAACAATGCTGGAACAAATAAAGGTTTTAGACCATTGCTTCAATTCAGTGATGAAGACATCAAACAGATTGTCTCGACAAATTTGGTTGGTTCCATCCTTTGTACTCGAGAAGCCATGCGTATTATGAGAAACCAAACCAAGCCAGGCCACATATTTAATATGGACGGTGCAGGTTCCGGAGGCTCTAGCACACCTCTGACAGCCGTCTATGGTTCTACAAAATGTGGCCTTAGACAATTTCATGGATCACTATTGACGGAGTGCAAGCGATCGAAAGTAGGTGTCCATACAGCATCTCCAGGCATGGTTCTCACAGAACTTCTTTTAAGTGGTTCAACTATCCAAAACAAGCAAATGTTCAATATCATATGTGAGCTTCCTGAAACTGTTGCTAGAACATTAGTTCCACGGATGCGAGTCGTTAAAGGAACAGGCAAGGCCATCAATTACTTGACTCCTCCTAGAATCTTGCTTGCCTTGGTCACTGCTTGGTTACGGCGAGGTCGCTGGTTTGATGATGAGGGGAGAGCATTATACTCAGCCGAAGCAGACCGACTTAGAAACTGGGCAGAAAACCGCGCACGGTTTTCCTTCACCGATGCAATGGAAATGTACACAGAAAACACATGGTTATCAGTCTTCTCACTTTCAGTTGTTTGTGCATTCATAATTCTTTCTAGCACTAGCAGCAATTTGCCTGGAACATAA

Protein sequence

>Msa0899730

MATTIVKLQVFPECNLNKHKLRNGFGSSNSSSGVFGFGQNFGGLCLRKCRAFKSEDGGGGGGLKEKKLRNLKKKEVKLQIENGFWSNFRNVLLGNFMMGSKLDDEYRQAVVRVDEVLSKIAVQIGRYIVTMMSTGVILAIGFQMSGGDSQMDALIWYSWLGGVIIGTMIGANWVLEDYCREGPRNVVITGSTRGLGKALAREFLLSGDRVIVTSRSPESVQATVKELEENLKEGIANAVGSSLTKLSQAKVVGIACDVCEANDVQRLANFAVSELGYIDIWINNAGTNKGFRPLLQFSDEDIKQIVSTNLVGSILCTREAMRIMRNQTKPGHIFNMDGAGSGGSSTPLTAVYGSTKCGLRQFHGSLLTECKRSKVGVHTASPGMVLTELLLSGSTIQNKQMFNIICELPETVARTLVPRMRVVKGTGKAINYLTPPRILLALVTAWLRRGRWFDDEGRALYSAEADRLRNWAENRARFSFTDAMEMYTENTWLSVFSLSVVCAFIILSSTSSNLPGT*