AlfalfaGEDB | Msa0265150

M. sativa cultivar zhongmu-4 / Msa0265150

KEGG: -
GO: GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141
PFAM: PF02042.18

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265150	XP_003597538.2	95.562	969	37	2	1	968	1	964	0.0	1910

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265150	sp\|O22864\|NLP8_ARATH	48.092	996	434	21	1	965	1	944	0.0	796

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265150	G7IS09	95.562	969	37	2	1	968	1	964	0.0	1910

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TFs/TRs:

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Gene ID	Type	Classification
Msa0265150	TF	RWP-RK

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Protein Kinases:

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Gene ID	Type	Classification
No data available in table

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0005270	Msa0265150	0.822341	2.494322e-53	-8.615850e-47
Msa0006110	Msa0265150	0.849811	2.544351e-60	-8.615850e-47
Msa0007990	Msa0265150	0.808393	3.166364e-50	-8.615850e-47
Msa0008220	Msa0265150	0.832976	6.951223e-56	-8.615850e-47
Msa0010770	Msa0265150	0.802692	4.972217e-49	-8.615850e-47
Msa0012710	Msa0265150	0.816319	5.879965e-52	-8.615850e-47
Msa0013540	Msa0265150	0.818267	2.142475e-52	-8.615850e-47
Msa0015090	Msa0265150	0.842587	2.361178e-58	-8.615850e-47
Msa0017320	Msa0265150	0.869366	3.267226e-66	-8.615850e-47
Msa0018070	Msa0265150	0.801593	8.369949e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0265150	MtrunA17_Chr2g0329671	95.562	969	37	2	1	968	1	964	0.0	1910
Msa0265150	MtrunA17_Chr4g0033791	59.792	960	322	21	1	950	1	906	0.0	1061
Msa0265150	MtrunA17_Chr6g0472281	35.775	819	417	18	177	961	112	855	1.64e-145	454
Msa0265150	MtrunA17_Chr1g0203081	40.000	595	309	17	177	745	124	696	6.41e-120	390
Msa0265150	MtrunA17_Chr1g0203081	45.745	94	50	1	869	961	884	977	2.83e-17	87.4
Msa0265150	MtrunA17_Chr3g0143921	39.223	566	291	14	176	701	138	690	1.51e-117	382
Msa0265150	MtrunA17_Chr5g0448621	31.044	364	205	12	173	526	122	449	1.31e-43	171
Msa0265150	MtrunA17_Chr5g0448621	67.778	90	25	1	602	691	607	692	5.82e-31	131

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	bit score
Msa0265150	AT2G43500.3	48.830	983	433	20	1	965	1	931	807
Msa0265150	AT2G43500.9	48.830	983	433	20	1	965	1	931	807
Msa0265150	AT2G43500.6	48.830	983	433	20	1	965	1	931	807
Msa0265150	AT2G43500.1	48.830	983	433	20	1	965	1	931	807
Msa0265150	AT2G43500.10	48.830	983	433	20	1	965	1	931	807
Msa0265150	AT2G43500.11	48.830	983	433	20	1	965	1	931	807
Msa0265150	AT2G43500.7	48.830	983	433	20	1	965	1	931	807
Msa0265150	AT2G43500.8	48.830	983	433	20	1	965	1	931	807
Msa0265150	AT2G43500.5	48.193	996	433	21	1	965	1	944	796
Msa0265150	AT2G43500.4	48.193	996	433	21	1	965	1	944	796

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Find 277 sgRNAs with CRISPR-Local

Find 666 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGGATATGCAGGCATCA+CGG	0.641252	2_2:+65399081	Msa0265150:CDS
AAACGAACCTTCTTGTAATC+AGG	0.345572	2_2:+65395882	Msa0265150:CDS
AAACGTAAACATAGTACTAT+TGG	0.410618	2_2:+65399531	Msa0265150:CDS
AAAGTTGTCACTCCTTGACT+TGG	0.509452	2_2:-65400494	None:intergenic
AAATCAACCATAGTTGATAG+CGG	0.669638	2_2:+65399738	Msa0265150:CDS
AACACACGGCCAGGAAGACC+CGG	0.580655	2_2:-65393272	None:intergenic
AACATAGTACTATTGGCCAG+AGG	0.720267	2_2:+65399538	Msa0265150:CDS
AACTATGGTTGATTTGCCTT+TGG	0.369589	2_2:-65399730	None:intergenic
AAGAACCAGAAGCCGTCCAA+AGG	0.607244	2_2:+65399714	Msa0265150:CDS
AAGAGTTTGAGGACAGTTTC+AGG	0.268953	2_2:+65395694	Msa0265150:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AAGCAGTTAAAGAAATGAAG+TGG	-	chr2_2:65391281-65391300	None:intergenic	30.0%
ATTTCAAAAGGAAGGCAAAA+GGG	-	chr2_2:65391557-65391576	None:intergenic	30.0%
AATCTGAACATACTGAAAGT+GGG	+	chr2_2:65391671-65391690	Msa0265150:five_prime_UTR	30.0%
ACTAGAGAGAATCAAAATTC+AGG	-	chr2_2:65391931-65391950	None:intergenic	30.0%
AAGATTTAATTGAAGAGTGG+TGG	+	chr2_2:65391961-65391980	Msa0265150:intron	30.0%
ATGAACTTTGATACTTATGC+TGG	+	chr2_2:65392675-65392694	Msa0265150:CDS	30.0%
CGGTGGAAATTACAATAATT+TGG	+	chr2_2:65392836-65392855	Msa0265150:CDS	30.0%
TGGATTGTAATAACCAACAT+TGG	-	chr2_2:65393324-65393343	None:intergenic	30.0%
TATTTGTATCTATATTGCCC+TGG	+	chr2_2:65393686-65393705	Msa0265150:intron	30.0%
CTTAAATGCTTATCAAACCA+GGG	-	chr2_2:65393706-65393725	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_2	gene	65391189	65400503	65391189	ID=Msa0265150;Name=Msa0265150
chr2_2	mRNA	65391189	65400503	65391189	ID=Msa0265150-mRNA-1;Parent=Msa0265150;Name=Msa0265150-mRNA-1;_AED=0.08;_eAED=0.08;_QI=379\|1\|1\|1\|0.66\|0.57\|7\|433\|968
chr2_2	exon	65391189	65391379	65391189	ID=Msa0265150-mRNA-1:exon:20556;Parent=Msa0265150-mRNA-1
chr2_2	exon	65391670	65391773	65391670	ID=Msa0265150-mRNA-1:exon:20557;Parent=Msa0265150-mRNA-1
chr2_2	exon	65392450	65393517	65392450	ID=Msa0265150-mRNA-1:exon:20558;Parent=Msa0265150-mRNA-1
chr2_2	exon	65395039	65395083	65395039	ID=Msa0265150-mRNA-1:exon:20559;Parent=Msa0265150-mRNA-1
chr2_2	exon	65395157	65395903	65395157	ID=Msa0265150-mRNA-1:exon:20560;Parent=Msa0265150-mRNA-1
chr2_2	exon	65397717	65397840	65397717	ID=Msa0265150-mRNA-1:exon:20561;Parent=Msa0265150-mRNA-1
chr2_2	exon	65399064	65400503	65399064	ID=Msa0265150-mRNA-1:exon:20562;Parent=Msa0265150-mRNA-1
chr2_2	five_prime_UTR	65391189	65391379	65391189	ID=Msa0265150-mRNA-1:five_prime_utr;Parent=Msa0265150-mRNA-1
chr2_2	five_prime_UTR	65391670	65391773	65391670	ID=Msa0265150-mRNA-1:five_prime_utr;Parent=Msa0265150-mRNA-1
chr2_2	five_prime_UTR	65392450	65392533	65392450	ID=Msa0265150-mRNA-1:five_prime_utr;Parent=Msa0265150-mRNA-1
chr2_2	CDS	65392534	65393517	65392534	ID=Msa0265150-mRNA-1:cds;Parent=Msa0265150-mRNA-1
chr2_2	CDS	65395039	65395083	65395039	ID=Msa0265150-mRNA-1:cds;Parent=Msa0265150-mRNA-1
chr2_2	CDS	65395157	65395903	65395157	ID=Msa0265150-mRNA-1:cds;Parent=Msa0265150-mRNA-1
chr2_2	CDS	65397717	65397840	65397717	ID=Msa0265150-mRNA-1:cds;Parent=Msa0265150-mRNA-1
chr2_2	CDS	65399064	65400070	65399064	ID=Msa0265150-mRNA-1:cds;Parent=Msa0265150-mRNA-1
chr2_2	three_prime_UTR	65400071	65400503	65400071	ID=Msa0265150-mRNA-1:three_prime_utr;Parent=Msa0265150-mRNA-1

Gene Sequence

>Msa0265150

ATGGAATACCCTTTTTATTCTAAGGGAGGAGGAATTGGGTATTGGCAGTCTCCTGGAACTCAGTTCGAAGGGCCAACATCATTAGATGGTGGAATCAACAATTTGGTGTCAGAAGATATGCCTAACAGCTTCTCCGAGCTCATGAACTTTGATACTTATGCTGGTTTGTGTTCTGGCCCATCCATGACCGATCAGATTATGACCAATGAGCTTCCATCTCTTGCCTCGGTATTATATCAATCGCCTGATGGATTCAATCCAGTCGAACAGAACAGTGGACAATTCTATATGACAGGAGGAGTCGGTGGAAATTACAATAATTTGGAAAGCTCCCCTATTTTTGGGGAGAAAATTGTGTGTCAGCAAATGGATACCCTACTTGGTTTCTTAGACAACAGCAATGATGCAAATAACTTAAGTTCTAGGCAAAAATTTGACGACCCTTCGCAACATGTCAATGCCTTTGATATGGGTAATTATGTAATCGCCAGGCCACAAGCTTTAATCTCCAGGCCACCTGCTTTGTCACTTGATGAGAGAATGCTGAAAGCCTTGTCCTTCTTTAAAGAATCAGCTGGTGGGGGAATATTGGCACAAGTTTGGGTACCCATAAAGCATGATGGTCAAGTACTCTTAAGCACCAGCGAGCAACCTTATTTACTAGATCAAATGCTTGCAGGGTATCGTGAAGTTTCAAGGACATTTAGATTTTCTACAGAAGGAAAACCAGGTTGTATACCGGGTCTTCCTGGCCGTGTGTTTATCTCCAAAGTTCCTGAGTGGACTTCCAATGTTGGTTATTACAATCCAAAGGAGTACTTGAGGGCTGAGCATGCAAGAAATCACGAGGTTCGTGGATCAATTGCTTTTCCCATATTTGATCTGCACTCTGGACTGCCATGTTCTGCTGTCTTGGAACTTGTCACTACAAAGGAAAAGCTTGATTTTGACAGAGAGTTGGAAATCATTTGTCGGTCACTTCAGCTTGTAAATTTAAGGACTGCTGTGTCTTCTCGGCTGCTTCCTGAGTGTCTTTCGACCAATAAAAGAGCTGCTTTAACCGAGATAGTGGATGTGTTACGATCTGTGTGTCATGCACATAGATTGCCATTGGCACTAACATGGATTCCCTGTTTTTACACCGACGGCGCAAGAGATGTAACTACTAGAATACAAATTAAAGAGGGTAATTCAAGTTCTCGAGAAAAAAACATACTGTGTATTGAAGAATCAGCTTGCTATATAACTGATAAAGTGATGGAAGGATTTGTGCGTGCATGCATTGAACATCCTCTTGAGGAAGGGAAAGGTGTAGCTGGGAAAGCACTTCAATCAAACCATCCTTTCTTCTATTCTGACGTGAAAACATATGATATTAGTGAGTATCCGCTTGTTCATCATGCTCGCAAGTTCAATTTGGGTGCTGCAGTTGCAATCAGGCTAAGGAGTATTTATACTAATAATGATGATTACATATTGGAATTCTTTCTTCCTATCAATATGAAAGGGAGTCAAGAACAGCAACTCTTATTAGACAACCTCTCAGGTACCATGCAGAAAATTTGTAAGAGTTTGAGGACAGTTTCAGGTGCTGAAATATCAGGAACAGAAAGCTCAGTGGCGGTGTTTGGAAAGAAAAATGTACCAAGTTTCCCCCCCACATCTACGAGGAACTCTCAGATATCATTAATAAATGAAAAGGATGGTTCTGTTCAGAAGCTATCATTGGATGCTTCTAATCTGAGAAACAATGGAAACGAACCTTCTTGTAATCAGGAAAATAATGGATCGAGAAGGCGAGTTGAGAAAAAAAGAAACACATCAGAGAAGAATGTTAGCTTGAGTGTTCTCCAGCAATACTTTTCTGGTAGTCTGAAGGATGCTGCAAAAAGCATTGGTGTATGCCCGACAACTCTGAAAAGGATATGCAGGCATCACGGAATTTCAAGATGGCCATCCCGCAAGATTAATAAAGTGAATCGATCTTTGAAGAAAATTCAGACTGTGCTGGACTCTGTTCAGGGAGTTGAAGGCGGGTTGAAGTTTGATCCTTCCTCGGGAGCATTTGTGGCAGGAGGGACAACCATACAAGAAATCAATGAAAATAGAAGTCTCCTTTTCCCCGAGAGAAGTACTACACAAGACTCTGAGCCTATTTCACAAGATGCTGTCTCGGTGCCTAGTGAAGGTGAGAATTCGGAAAATAAGTTGGAGGGAAAATTGAAGGAAACCAATACTTGTTCGATCAATTGCAGTGAAGATTCAAAATCATTTGGAATGGATGATTGTCCTGAACAAGCTTGTAATGGCTCCGTTCTTGCAAAATGTGATGAATGGATTCTAAACAATGGCGGTTTGAGAGAAGAAAAACGTAAACATAGTACTATTGGCCAGAGGACAAGTTCCTTTGCTGTTGATGAGATGGACACTGGTGCGGATGGGGATGATGATGTTGTTGAACACAACCATCCTACTTCTTCAAGCTTGACAGATTCGTCTAATGGCTCTGGTTCAATGATACATGGCAGTTCATCAGATTATCAGAACTTTAAGAACCAGAAGCCGTCCAAAGGCAAATCAACCATAGTTGATAGCGGGTCTAAAATCGTCGTGAAAGCTACCTATGGAGAAGACACCATTCGTTTCAAGTTTGATCCATCCACAGGTTATTATAAACTATATGAAGAAGTTGCAGCAAGATTTAAACTACAAGATGGATCATTCCAGCTCAAATATCTAGATGATGAAGAAGAATGGGTGATGTTAGTGAACGACTCGGATTTGCAAGTGTGTTTGGAAATATTGAATGACATGGGGACGCATAATGCCAGGTTTCTTGTTCGTGATATTCCTTGTACGTTTGGCAGCTCTGGCAGTAGCAGTTGCTACTTGGGAGGCAGCTCATAG

Protein sequence

>Msa0265150

MEYPFYSKGGGIGYWQSPGTQFEGPTSLDGGINNLVSEDMPNSFSELMNFDTYAGLCSGPSMTDQIMTNELPSLASVLYQSPDGFNPVEQNSGQFYMTGGVGGNYNNLESSPIFGEKIVCQQMDTLLGFLDNSNDANNLSSRQKFDDPSQHVNAFDMGNYVIARPQALISRPPALSLDERMLKALSFFKESAGGGILAQVWVPIKHDGQVLLSTSEQPYLLDQMLAGYREVSRTFRFSTEGKPGCIPGLPGRVFISKVPEWTSNVGYYNPKEYLRAEHARNHEVRGSIAFPIFDLHSGLPCSAVLELVTTKEKLDFDRELEIICRSLQLVNLRTAVSSRLLPECLSTNKRAALTEIVDVLRSVCHAHRLPLALTWIPCFYTDGARDVTTRIQIKEGNSSSREKNILCIEESACYITDKVMEGFVRACIEHPLEEGKGVAGKALQSNHPFFYSDVKTYDISEYPLVHHARKFNLGAAVAIRLRSIYTNNDDYILEFFLPINMKGSQEQQLLLDNLSGTMQKICKSLRTVSGAEISGTESSVAVFGKKNVPSFPPTSTRNSQISLINEKDGSVQKLSLDASNLRNNGNEPSCNQENNGSRRRVEKKRNTSEKNVSLSVLQQYFSGSLKDAAKSIGVCPTTLKRICRHHGISRWPSRKINKVNRSLKKIQTVLDSVQGVEGGLKFDPSSGAFVAGGTTIQEINENRSLLFPERSTTQDSEPISQDAVSVPSEGENSENKLEGKLKETNTCSINCSEDSKSFGMDDCPEQACNGSVLAKCDEWILNNGGLREEKRKHSTIGQRTSSFAVDEMDTGADGDDDVVEHNHPTSSSLTDSSNGSGSMIHGSSSDYQNFKNQKPSKGKSTIVDSGSKIVVKATYGEDTIRFKFDPSTGYYKLYEEVAARFKLQDGSFQLKYLDDEEEWVMLVNDSDLQVCLEILNDMGTHNARFLVRDIPCTFGSSGSSSCYLGGSS*