Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881960 | XP_013448021.1 | 68.447 | 412 | 56 | 5 | 1 | 338 | 1 | 412 | 0.0 | 548 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881960 | sp|Q67ZU1|LIP2_ARATH | 57.322 | 239 | 93 | 5 | 12 | 243 | 14 | 250 | 2.99e-91 | 281 |
| Msa0881960 | sp|Q67ZU1|LIP2_ARATH | 60.952 | 105 | 41 | 0 | 233 | 337 | 312 | 416 | 1.15e-38 | 145 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0612350 | Msa0881960 | 0.803636 | 3.171164e-49 | -8.615850e-47 |
| Msa0626460 | Msa0881960 | 0.805214 | 1.486973e-49 | -8.615850e-47 |
| Msa0664540 | Msa0881960 | 0.815316 | 9.840930e-52 | -8.615850e-47 |
| Msa0703540 | Msa0881960 | 0.802020 | 6.839826e-49 | -8.615850e-47 |
| Msa0187540 | Msa0881960 | 0.803838 | 2.879108e-49 | -8.615850e-47 |
| Msa0427700 | Msa0881960 | 0.816403 | 5.630793e-52 | -8.615850e-47 |
| Msa0481630 | Msa0881960 | 0.808526 | 2.965829e-50 | -8.615850e-47 |
| Msa0254260 | Msa0881960 | 0.816026 | 6.837752e-52 | -8.615850e-47 |
| Msa0263230 | Msa0881960 | 0.817182 | 3.764579e-52 | -8.615850e-47 |
| Msa0304570 | Msa0881960 | 0.817334 | 3.480989e-52 | -8.615850e-47 |
| Msa0304680 | Msa0881960 | 0.813512 | 2.465012e-51 | -8.615850e-47 |
| Msa0335360 | Msa0881960 | 0.840521 | 8.269418e-58 | -8.615850e-47 |
| Msa0881960 | Msa0979180 | 0.800650 | 1.304645e-48 | -8.615850e-47 |
| Msa0881960 | Msa1012800 | 0.819532 | 1.105189e-52 | -8.615850e-47 |
| Msa0881960 | Msa1013650 | 0.912521 | 1.770467e-83 | -8.615850e-47 |
| Msa0881960 | Msa1054930 | 0.870407 | 1.493563e-66 | -8.615850e-47 |
| Msa0881960 | Msa1129330 | 0.832058 | 1.173773e-55 | -8.615850e-47 |
| Msa0881960 | Msa1132470 | 0.826738 | 2.300929e-54 | -8.615850e-47 |
| Msa0881960 | Msa1341840 | 0.817887 | 2.611590e-52 | -8.615850e-47 |
| Msa0881960 | Msa1382710 | 0.807007 | 6.238330e-50 | -8.615850e-47 |
| Msa0881960 | Msa1461370 | 0.822664 | 2.099248e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881960 | MtrunA17_Chr7g0225611 | 68.447 | 412 | 56 | 5 | 1 | 338 | 1 | 412 | 0.0 | 548 |
| Msa0881960 | MtrunA17_Chr6g0459361 | 62.069 | 232 | 81 | 5 | 5 | 232 | 5 | 233 | 2.41e-103 | 303 |
| Msa0881960 | MtrunA17_Chr6g0459401 | 57.647 | 255 | 101 | 5 | 1 | 251 | 1 | 252 | 3.97e-103 | 303 |
| Msa0881960 | MtrunA17_Chr6g0459421 | 58.468 | 248 | 96 | 5 | 1 | 244 | 1 | 245 | 8.23e-102 | 300 |
| Msa0881960 | MtrunA17_Chr6g0459381 | 61.017 | 236 | 85 | 4 | 1 | 232 | 1 | 233 | 1.72e-100 | 296 |
| Msa0881960 | MtrunA17_Chr6g0462811 | 43.161 | 329 | 145 | 6 | 44 | 336 | 41 | 363 | 4.04e-93 | 281 |
| Msa0881960 | MtrunA17_Chr5g0438751 | 48.035 | 229 | 112 | 2 | 17 | 244 | 12 | 234 | 1.04e-71 | 228 |
| Msa0881960 | MtrunA17_Chr5g0438751 | 51.923 | 104 | 50 | 0 | 233 | 336 | 297 | 400 | 4.08e-32 | 124 |
| Msa0881960 | MtrunA17_Chr3g0120041 | 55.851 | 188 | 80 | 2 | 45 | 232 | 45 | 229 | 1.08e-71 | 223 |
| Msa0881960 | MtrunA17_Chr7g0250081 | 52.105 | 190 | 88 | 1 | 44 | 233 | 40 | 226 | 3.44e-67 | 216 |
| Msa0881960 | MtrunA17_Chr7g0250081 | 49.038 | 104 | 53 | 0 | 233 | 336 | 300 | 403 | 3.96e-30 | 118 |
| Msa0881960 | MtrunA17_Chr3g0119931 | 54.070 | 172 | 76 | 1 | 46 | 217 | 42 | 210 | 8.33e-65 | 205 |
| Msa0881960 | MtrunA17_Chr3g0120021 | 48.387 | 217 | 86 | 2 | 40 | 233 | 36 | 249 | 1.96e-64 | 210 |
| Msa0881960 | MtrunA17_Chr3g0120021 | 48.077 | 104 | 54 | 0 | 233 | 336 | 341 | 444 | 1.38e-27 | 112 |
| Msa0881960 | MtrunA17_Chr7g0250091 | 32.564 | 390 | 155 | 9 | 9 | 337 | 10 | 352 | 1.57e-57 | 190 |
| Msa0881960 | MtrunA17_Chr1g0207891 | 42.289 | 201 | 110 | 2 | 38 | 232 | 25 | 225 | 1.44e-50 | 173 |
| Msa0881960 | MtrunA17_Chr1g0207891 | 35.185 | 108 | 65 | 2 | 231 | 338 | 297 | 399 | 1.29e-17 | 83.2 |
| Msa0881960 | MtrunA17_Chr5g0394731 | 54.237 | 118 | 49 | 1 | 116 | 233 | 20 | 132 | 8.36e-38 | 132 |
| Msa0881960 | MtrunA17_Chr6g0459431 | 47.407 | 135 | 66 | 2 | 208 | 337 | 7 | 141 | 2.86e-37 | 130 |
| Msa0881960 | MtrunA17_Chr6g0459411 | 47.407 | 135 | 66 | 2 | 208 | 337 | 7 | 141 | 3.94e-37 | 130 |
| Msa0881960 | MtrunA17_Chr6g0459391 | 57.143 | 105 | 44 | 1 | 234 | 337 | 69 | 173 | 3.23e-36 | 129 |
| Msa0881960 | MtrunA17_Chr6g0462831 | 31.923 | 260 | 103 | 6 | 150 | 336 | 4 | 262 | 9.36e-34 | 125 |
| Msa0881960 | MtrunA17_Chr6g0459371 | 57.955 | 88 | 36 | 1 | 251 | 337 | 1 | 88 | 2.37e-30 | 110 |
| Msa0881960 | MtrunA17_Chr3g0120031 | 45.690 | 116 | 58 | 2 | 226 | 336 | 56 | 171 | 3.21e-29 | 110 |
| Msa0881960 | MtrunA17_Chr3g0119941 | 45.192 | 104 | 57 | 0 | 233 | 336 | 63 | 166 | 1.19e-26 | 103 |
| Msa0881960 | MtrunA17_Chr8g0390731 | 27.830 | 212 | 122 | 6 | 44 | 233 | 294 | 496 | 3.61e-14 | 73.6 |
| Msa0881960 | MtrunA17_Chr6g0484931 | 34.043 | 141 | 84 | 3 | 31 | 171 | 275 | 406 | 4.43e-14 | 73.2 |
| Msa0881960 | MtrunA17_Chr6g0462821 | 51.064 | 47 | 22 | 1 | 102 | 148 | 1 | 46 | 2.75e-11 | 58.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0881960 | AT5G14180.5 | 57.322 | 239 | 93 | 5 | 12 | 243 | 14 | 250 | 9.96e-94 | 281 |
| Msa0881960 | AT5G14180.3 | 57.322 | 239 | 93 | 5 | 12 | 243 | 14 | 250 | 2.01e-93 | 281 |
| Msa0881960 | AT5G14180.1 | 57.322 | 239 | 93 | 5 | 12 | 243 | 14 | 250 | 3.04e-92 | 281 |
| Msa0881960 | AT5G14180.1 | 60.952 | 105 | 41 | 0 | 233 | 337 | 312 | 416 | 1.17e-39 | 145 |
| Msa0881960 | AT5G14180.4 | 65.942 | 138 | 47 | 0 | 102 | 239 | 7 | 144 | 1.02e-63 | 205 |
| Msa0881960 | AT5G14180.4 | 60.952 | 105 | 41 | 0 | 233 | 337 | 212 | 316 | 2.53e-40 | 144 |
| Msa0881960 | AT5G14180.2 | 65.185 | 135 | 47 | 0 | 105 | 239 | 1 | 135 | 1.50e-61 | 199 |
| Msa0881960 | AT5G14180.2 | 60.952 | 105 | 41 | 0 | 233 | 337 | 203 | 307 | 2.78e-40 | 144 |
| Msa0881960 | AT2G15230.1 | 31.856 | 361 | 166 | 7 | 47 | 335 | 32 | 384 | 5.05e-57 | 190 |
| Msa0881960 | AT1G73920.2 | 28.636 | 220 | 124 | 6 | 44 | 241 | 223 | 431 | 4.14e-15 | 76.6 |
| Msa0881960 | AT1G73920.1 | 28.636 | 220 | 124 | 6 | 44 | 241 | 292 | 500 | 6.65e-15 | 76.3 |
| Msa0881960 | AT1G18460.1 | 35.156 | 128 | 74 | 3 | 44 | 171 | 290 | 408 | 1.07e-13 | 72.4 |
Find 84 sgRNAs with CRISPR-Local
Find 342 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCATGATCTGCTAGAATTAA+AGG | 0.174183 | 6_1:-30403850 | None:intergenic |
| TGCTCATGCTGATTACATTA+TGG | 0.187385 | 6_1:+30406534 | Msa0881960:CDS |
| GTTGCAGCCAAATCCTTTAT+TGG | 0.270019 | 6_1:+30405070 | Msa0881960:CDS |
| AGTATTTACCTCACCAATAA+AGG | 0.285153 | 6_1:-30405083 | None:intergenic |
| CAGATCATGGCTTTGATGTT+TGG | 0.292443 | 6_1:+30403863 | Msa0881960:CDS |
| TACCTCACCAATAAAGGATT+TGG | 0.301945 | 6_1:-30405077 | None:intergenic |
| TACCTTCTGGAATCCTTTGC+AGG | 0.303254 | 6_1:-30401008 | None:intergenic |
| GCTCATGCTGATTACATTAT+GGG | 0.304433 | 6_1:+30406535 | Msa0881960:CDS |
| ATATGTGTATTTCTTACAAT+AGG | 0.314683 | 6_1:-30400257 | None:intergenic |
| ATGTTATTACCTGAAGTTCT+TGG | 0.316168 | 6_1:-30400531 | None:intergenic |
| GTGTAAATATGCAGGCCTTT+TGG | 0.322829 | 6_1:+30404675 | Msa0881960:intron |
| GCTTCTGCTGTCATTGTTCA+TGG | 0.326523 | 6_1:+30400499 | Msa0881960:CDS |
| GTAAGAAATACACATATAAA+AGG | 0.329004 | 6_1:+30400263 | Msa0881960:five_prime_UTR |
| ATTAAAGGCAAGTCTTGTTC+TGG | 0.333137 | 6_1:-30403835 | None:intergenic |
| GAAAGAAAGTGAAATGAAAA+AGG | 0.340300 | 6_1:-30400234 | None:intergenic |
| GATTATGTGTTTAGCCAAAC+AGG | 0.355642 | 6_1:+30404746 | Msa0881960:CDS |
| GCTTCAAGTCGTGTCTCCTT+TGG | 0.358205 | 6_1:+30400430 | Msa0881960:CDS |
| CAAATTTAATGCTATGTACT+AGG | 0.361127 | 6_1:+30406651 | Msa0881960:three_prime_UTR |
| TCCTTTGGAAGAAATCAAAA+TGG | 0.378214 | 6_1:+30400445 | Msa0881960:CDS |
| TTGAAGGTTACAACTAAAGA+TGG | 0.383740 | 6_1:+30400973 | Msa0881960:intron |
| ATACAAATGCCAAGAACTTC+AGG | 0.389343 | 6_1:+30400522 | Msa0881960:CDS |
| ATGTTGAGAATTTACTTGAT+AGG | 0.389542 | 6_1:+30406461 | Msa0881960:CDS |
| TATGTGTATTTCTTACAATA+GGG | 0.395124 | 6_1:-30400256 | None:intergenic |
| GGTAGAGTTGAAGGTAGAAA+TGG | 0.395667 | 6_1:+30401027 | Msa0881960:CDS |
| CTACCTTCAACTCTACCTTC+TGG | 0.406112 | 6_1:-30401021 | None:intergenic |
| AAATGGTGTTAGCCCTCCTT+TGG | 0.406335 | 6_1:+30400462 | Msa0881960:CDS |
| ATGTGGCTTAGATAAGCAAT+AGG | 0.409857 | 6_1:-30405028 | None:intergenic |
| CCTTTAATTCTAGCAGATCA+TGG | 0.423751 | 6_1:+30403850 | Msa0881960:CDS |
| ACATAAACATACTGGGTTAG+AGG | 0.428314 | 6_1:-30403938 | None:intergenic |
| TAGTGCATTATGTTATAATC+TGG | 0.439008 | 6_1:-30406337 | None:intergenic |
| GTTAGCCCTCCTTTGGATGA+AGG | 0.456402 | 6_1:+30400469 | Msa0881960:CDS |
| ATTCCAGAAGGTAGAGTTGA+AGG | 0.468226 | 6_1:+30401018 | Msa0881960:CDS |
| CATAAACATACTGGGTTAGA+GGG | 0.468329 | 6_1:-30403937 | None:intergenic |
| AAGGTAGAAATGGTGGGACT+AGG | 0.475923 | 6_1:+30401037 | Msa0881960:CDS |
| TAATTACGTTGGCCACTCTC+TGG | 0.476171 | 6_1:+30404778 | Msa0881960:CDS |
| GATTATAACATAATGCACTA+TGG | 0.477158 | 6_1:+30406340 | Msa0881960:CDS |
| ATGTTGGATAGGTTATATAT+TGG | 0.480961 | 6_1:-30406376 | None:intergenic |
| TTGGATAGGTTATATATTGG+TGG | 0.488015 | 6_1:-30406373 | None:intergenic |
| ATACCTCTCTTCATTAGCTA+TGG | 0.502974 | 6_1:+30406409 | Msa0881960:CDS |
| GCTATGTACTAGGTTGTCAT+TGG | 0.503802 | 6_1:+30406661 | Msa0881960:three_prime_UTR |
| AGGTATATCATGTGGAATGT+TGG | 0.504399 | 6_1:-30406392 | None:intergenic |
| AGAGTTGAAGGTAGAAATGG+TGG | 0.507614 | 6_1:+30401030 | Msa0881960:CDS |
| ATAAAGCTGCTGATTTCAGC+TGG | 0.510041 | 6_1:-30405000 | None:intergenic |
| AGCCACATGAACACTGCACT+TGG | 0.518331 | 6_1:+30405043 | Msa0881960:CDS |
| TACTTCTCTTATCAACATCA+TGG | 0.520662 | 6_1:-30406492 | None:intergenic |
| TTCATAGAACTTGATAGTCT+AGG | 0.524020 | 6_1:-30406627 | None:intergenic |
| GCTTTAGCTTCCTTCTCTGA+AGG | 0.525067 | 6_1:+30404965 | Msa0881960:CDS |
| TGGATAGGTTATATATTGGT+GGG | 0.529275 | 6_1:-30406372 | None:intergenic |
| GAGACCAACATGGTTTCTCT+AGG | 0.529963 | 6_1:+30400346 | Msa0881960:exon |
| GATATTACAACATGGAGTAT+TGG | 0.531184 | 6_1:+30401071 | Msa0881960:CDS |
| AACTATGCAGTTGTTAGACG+TGG | 0.537740 | 6_1:+30406286 | Msa0881960:intron |
| ACACGACTTGAAGCTTGATA+AGG | 0.543173 | 6_1:-30400421 | None:intergenic |
| TGGTGGGACTAGGAAACAAC+CGG | 0.545655 | 6_1:+30401047 | Msa0881960:CDS |
| TATCATGTGGAATGTTGGAT+AGG | 0.547791 | 6_1:-30406387 | None:intergenic |
| GTCCCAAGACCAATTCCAAA+AGG | 0.554581 | 6_1:-30404690 | None:intergenic |
| CTCATGCTGATTACATTATG+GGG | 0.555559 | 6_1:+30406536 | Msa0881960:CDS |
| TGTGGCTTAGATAAGCAATA+GGG | 0.559261 | 6_1:-30405027 | None:intergenic |
| TGAAGGTTACAACTAAAGAT+GGG | 0.560420 | 6_1:+30400974 | Msa0881960:intron |
| TAGTCGCCGACATGTCTCAT+TGG | 0.565789 | 6_1:+30403912 | Msa0881960:CDS |
| AAAGGCAAGTCTTGTTCTGG+AGG | 0.567063 | 6_1:-30403832 | None:intergenic |
| CCTCTCTTCATTAGCTATGG+AGG | 0.571727 | 6_1:+30406412 | Msa0881960:CDS |
| GCACATATGCCTTCATCCAA+AGG | 0.576347 | 6_1:-30400478 | None:intergenic |
| CACCAAGTGCAGTGTTCATG+TGG | 0.576864 | 6_1:-30405045 | None:intergenic |
| GTTTGGATTGCTAACACAAG+AGG | 0.581774 | 6_1:+30403880 | Msa0881960:CDS |
| ATTACAACATGGAGTATTGG+TGG | 0.587960 | 6_1:+30401074 | Msa0881960:CDS |
| ACTATGCAGTTGTTAGACGT+GGG | 0.595087 | 6_1:+30406287 | Msa0881960:intron |
| ACTCCATGTTGTAATATCAC+CGG | 0.596325 | 6_1:-30401066 | None:intergenic |
| GGGCAGAAAATTAATTACGT+TGG | 0.599333 | 6_1:+30404767 | Msa0881960:CDS |
| AAGGCAAGTCTTGTTCTGGA+GGG | 0.605642 | 6_1:-30403831 | None:intergenic |
| GGGTGCAGGATGGCATGACA+TGG | 0.627156 | 6_1:+30403800 | Msa0881960:intron |
| CATATGCCTTCATCCAAAGG+AGG | 0.627342 | 6_1:-30400475 | None:intergenic |
| ATGAAGAGAGGTATATCATG+TGG | 0.628119 | 6_1:-30406400 | None:intergenic |
| AGGGGTCCAATGAGACATGT+CGG | 0.633111 | 6_1:-30403918 | None:intergenic |
| ATATGCCTTCATCCAAAGGA+GGG | 0.644823 | 6_1:-30400474 | None:intergenic |
| ATTATGTGTTTAGCCAAACA+GGG | 0.645703 | 6_1:+30404747 | Msa0881960:CDS |
| CTATGCAGTTGTTAGACGTG+GGG | 0.648539 | 6_1:+30406288 | Msa0881960:intron |
| AGTAATGGAGTACCAGAGAG+TGG | 0.649875 | 6_1:-30404790 | None:intergenic |
| CCTCCATAGCTAATGAAGAG+AGG | 0.650648 | 6_1:-30406412 | None:intergenic |
| CAACCGGTGATATTACAACA+TGG | 0.652027 | 6_1:+30401063 | Msa0881960:CDS |
| ATAAACATACTGGGTTAGAG+GGG | 0.656553 | 6_1:-30403936 | None:intergenic |
| AGCCTGCAAAGGATTCCAGA+AGG | 0.663410 | 6_1:+30401006 | Msa0881960:CDS |
| GAGTTGAAGGTAGAAATGGT+GGG | 0.680227 | 6_1:+30401031 | Msa0881960:CDS |
| GAAGCCTAGAGAAACCATGT+TGG | 0.694754 | 6_1:-30400350 | None:intergenic |
| AGCTCATAGAGAGACCAACA+TGG | 0.737781 | 6_1:+30400336 | Msa0881960:exon |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATATATATAAAATATTAATT+GGG | - | chr6_1:30405402-30405421 | None:intergenic | 0.0% |
| !! | TATATATATAAAATATTAAT+TGG | - | chr6_1:30405403-30405422 | None:intergenic | 0.0% |
| !! | TATATCTTCATAAAAAATTA+TGG | + | chr6_1:30402864-30402883 | Msa0881960:intron | 10.0% |
| !! | AATAATAATAAAATGATTTG+TGG | - | chr6_1:30403258-30403277 | None:intergenic | 10.0% |
| !!! | CATAATTTTATACATAAAAA+AGG | + | chr6_1:30405238-30405257 | Msa0881960:intron | 10.0% |
| !! | TATAGTAAAAATGTTTATAT+TGG | - | chr6_1:30405561-30405580 | None:intergenic | 10.0% |
| !!! | GAAAATAGAAAATATTTTCA+TGG | - | chr6_1:30400607-30400626 | None:intergenic | 15.0% |
| !!! | TTTTCATTTCTTAAAATTTG+TGG | + | chr6_1:30400622-30400641 | Msa0881960:intron | 15.0% |
| !!! | CATGCATTTTATTATATTTT+TGG | - | chr6_1:30401133-30401152 | None:intergenic | 15.0% |
| !! | TATATAAGTTTATAAAATGG+AGG | + | chr6_1:30401297-30401316 | Msa0881960:intron | 15.0% |
| !!! | TAAAGTTTTTTTCCAATAAA+TGG | + | chr6_1:30402301-30402320 | Msa0881960:intron | 15.0% |
| !!! | AAAGTTTTTTTCCAATAAAT+GGG | + | chr6_1:30402302-30402321 | Msa0881960:intron | 15.0% |
| !! | TGAATGAAATTCAATAAATA+AGG | + | chr6_1:30402529-30402548 | Msa0881960:intron | 15.0% |
| !! | GAATGAAATTCAATAAATAA+GGG | + | chr6_1:30402530-30402549 | Msa0881960:intron | 15.0% |
| !! | TAATTGTTAATTAGAAGAAA+TGG | - | chr6_1:30403227-30403246 | None:intergenic | 15.0% |
| !! | ATTACTATTACATTAATTAG+AGG | - | chr6_1:30403676-30403695 | None:intergenic | 15.0% |
| !! | TAATGTAATAGTAATAGTAT+AGG | + | chr6_1:30403681-30403700 | Msa0881960:intron | 15.0% |
| !! | ATTACTATTACATTAATTAG+AGG | - | chr6_1:30403676-30403695 | None:intergenic | 15.0% |
| !! | TCTAATTAATGTAATAGTAA+TGG | + | chr6_1:30403675-30403694 | Msa0881960:intron | 15.0% |
| !!! | AATATTTTTTTGTTTGTTTG+AGG | + | chr6_1:30403972-30403991 | Msa0881960:intron | 15.0% |
| !!! | TTTGTTTATGCTTATTTTTA+AGG | + | chr6_1:30404072-30404091 | Msa0881960:intron | 15.0% |
| !!! | TACAATAAAGGTTTTTTTTT+TGG | - | chr6_1:30404537-30404556 | None:intergenic | 15.0% |
| !! | TTAAGGATTTATTACAATAA+AGG | - | chr6_1:30404549-30404568 | None:intergenic | 15.0% |
| !! | AAAAATTTATGTATTAGAGA+AGG | - | chr6_1:30404610-30404629 | None:intergenic | 15.0% |
| !! | TAAGAATTATAATTGATTGA+TGG | + | chr6_1:30405936-30405955 | Msa0881960:intron | 15.0% |
| !! | CTAACATTTAATTAGATATT+TGG | + | chr6_1:30406166-30406185 | Msa0881960:intron | 15.0% |
| !! | TATGTGTATTTCTTACAATA+GGG | - | chr6_1:30400259-30400278 | None:intergenic | 20.0% |
| !! | ATATGTGTATTTCTTACAAT+AGG | - | chr6_1:30400260-30400279 | None:intergenic | 20.0% |
| !! | GTAAGAAATACACATATAAA+AGG | + | chr6_1:30400263-30400282 | Msa0881960:five_prime_UTR | 20.0% |
| !!! | TAATTTTGAATAGTATGAGA+TGG | - | chr6_1:30400313-30400332 | None:intergenic | 20.0% |
| !! | TTTATCTGGATATGAAAAAA+AGG | - | chr6_1:30401191-30401210 | None:intergenic | 20.0% |
| !! | AAAAATGTAACCATAAAACT+TGG | + | chr6_1:30401672-30401691 | Msa0881960:intron | 20.0% |
| !!! | AAAATAATAGCCAAGTTTTA+TGG | - | chr6_1:30401685-30401704 | None:intergenic | 20.0% |
| !!! | CATTTTTCTCTTAGATATTT+TGG | - | chr6_1:30401717-30401736 | None:intergenic | 20.0% |
| !!! | TTCGTTGTTATTTAATCAAA+GGG | - | chr6_1:30402117-30402136 | None:intergenic | 20.0% |
| !!! | ATTCGTTGTTATTTAATCAA+AGG | - | chr6_1:30402118-30402137 | None:intergenic | 20.0% |
| !!! | TTTTTGGTGAAAAAATTGTT+AGG | - | chr6_1:30402172-30402191 | None:intergenic | 20.0% |
| !!! | CATATTTTTGTGTTACTTTT+CGG | + | chr6_1:30402238-30402257 | Msa0881960:intron | 20.0% |
| !! | CCACTAATTACATTTAATAA+GGG | - | chr6_1:30402498-30402517 | None:intergenic | 20.0% |
| !! | TCCACTAATTACATTTAATA+AGG | - | chr6_1:30402499-30402518 | None:intergenic | 20.0% |
| !! | ATAAAGAGAATGTTGTTATA+AGG | - | chr6_1:30403082-30403101 | None:intergenic | 20.0% |
| !! | AAGGAATGTATGTATATATA+TGG | + | chr6_1:30403648-30403667 | Msa0881960:intron | 20.0% |
| !! | AGGAATGTATGTATATATAT+GGG | + | chr6_1:30403649-30403668 | Msa0881960:intron | 20.0% |
| !! | TAATGTAATAGTAATGGTAT+AGG | + | chr6_1:30403727-30403746 | Msa0881960:intron | 20.0% |
| !! | CAAAAAAACATAAACATACT+GGG | - | chr6_1:30403948-30403967 | None:intergenic | 20.0% |
| !! | ACAAAAAAACATAAACATAC+TGG | - | chr6_1:30403949-30403968 | None:intergenic | 20.0% |
| !!! | ATGCTTATTTTTAAGGAAAA+TGG | + | chr6_1:30404079-30404098 | Msa0881960:intron | 20.0% |
| !! | TGAAGACTATTCAAATATTT+AGG | - | chr6_1:30404106-30404125 | None:intergenic | 20.0% |
| !!! | TAATTTTGACTTGTATTTGT+AGG | - | chr6_1:30404175-30404194 | None:intergenic | 20.0% |
| !! | AATTATGTTAAATAAGTAGC+TGG | - | chr6_1:30404304-30404323 | None:intergenic | 20.0% |
| !! | GAAAATGCTAACAATAAAAT+TGG | - | chr6_1:30404407-30404426 | None:intergenic | 20.0% |
| !! | TCCTTAAATTATTTATTGTG+TGG | + | chr6_1:30404425-30404444 | Msa0881960:intron | 20.0% |
| !! | ACCACACAATAAATAATTTA+AGG | - | chr6_1:30404429-30404448 | None:intergenic | 20.0% |
| !! | AATTAAAACTGTTAGAAACA+AGG | + | chr6_1:30404456-30404475 | Msa0881960:intron | 20.0% |
| !! | AAGATACACTAATTTCATTA+AGG | - | chr6_1:30404566-30404585 | None:intergenic | 20.0% |
| !! | TCATGTAAAAAAGTAAGTAA+TGG | - | chr6_1:30404808-30404827 | None:intergenic | 20.0% |
| !! | GACAAATAGAAAGTAAAAAA+GGG | - | chr6_1:30404907-30404926 | None:intergenic | 20.0% |
| !! | AGACAAATAGAAAGTAAAAA+AGG | - | chr6_1:30404908-30404927 | None:intergenic | 20.0% |
| !! | TTGGTCAAAGTAAAATATTT+GGG | - | chr6_1:30405542-30405561 | None:intergenic | 20.0% |
| !! | ATTGGTCAAAGTAAAATATT+TGG | - | chr6_1:30405543-30405562 | None:intergenic | 20.0% |
| !! | ATAATTTGATCTCTATATGT+TGG | + | chr6_1:30406041-30406060 | Msa0881960:intron | 20.0% |
| ! | GAAAGAAAGTGAAATGAAAA+AGG | - | chr6_1:30400237-30400256 | None:intergenic | 25.0% |
| ! | TAGAATTTAGTTGGACAAAT+TGG | - | chr6_1:30400787-30400806 | None:intergenic | 25.0% |
| ! | AATTAAATGTTTATCCCTTG+TGG | - | chr6_1:30400871-30400890 | None:intergenic | 25.0% |
| !! | TTGCAATCTTAACTTTTTGA+AGG | + | chr6_1:30400957-30400976 | Msa0881960:intron | 25.0% |
| ! | GGAAAAAAAAGACATTTATC+TGG | - | chr6_1:30401205-30401224 | None:intergenic | 25.0% |
| ! | TTTATAAAATGGAGGACATA+AGG | + | chr6_1:30401305-30401324 | Msa0881960:intron | 25.0% |
| ! | TTATAAAATGGAGGACATAA+GGG | + | chr6_1:30401306-30401325 | Msa0881960:intron | 25.0% |
| ! | TTTGTCACCATGTTAAAATA+TGG | - | chr6_1:30401508-30401527 | None:intergenic | 25.0% |
| !!! | TACACCAATTTTTAGAGAAA+GGG | - | chr6_1:30401612-30401631 | None:intergenic | 25.0% |
| !!! | TTACACCAATTTTTAGAGAA+AGG | - | chr6_1:30401613-30401632 | None:intergenic | 25.0% |
| ! | TCTAAGAGAAAAATGACATA+TGG | + | chr6_1:30401722-30401741 | Msa0881960:intron | 25.0% |
| !! | TTGATAATCTGAAGATTGTT+AGG | + | chr6_1:30401803-30401822 | Msa0881960:intron | 25.0% |
| ! | TTCCAGTCAAAATTCTAATA+TGG | + | chr6_1:30401853-30401872 | Msa0881960:intron | 25.0% |
| !!! | ATCCATATTAGAATTTTGAC+TGG | - | chr6_1:30401858-30401877 | None:intergenic | 25.0% |
| ! | AGTCAAAATTCTAATATGGA+TGG | + | chr6_1:30401857-30401876 | Msa0881960:intron | 25.0% |
| ! | CGAAAAGTAACACAAAAATA+TGG | - | chr6_1:30402240-30402259 | None:intergenic | 25.0% |
| !! | TTTTCGGCAAATATTAATCA+TGG | + | chr6_1:30402254-30402273 | Msa0881960:intron | 25.0% |
| ! | AGAATAAGATTCCCATTTAT+TGG | - | chr6_1:30402316-30402335 | None:intergenic | 25.0% |
| !!! | AGTGATAACCCTTAATTTTT+TGG | + | chr6_1:30402338-30402357 | Msa0881960:intron | 25.0% |
| ! | TTTCTCCTCCAAAAAATTAA+GGG | - | chr6_1:30402349-30402368 | None:intergenic | 25.0% |
| ! | ATTTCTCCTCCAAAAAATTA+AGG | - | chr6_1:30402350-30402369 | None:intergenic | 25.0% |
| ! | AAGTTTGTGCATGATTATTA+AGG | + | chr6_1:30402416-30402435 | Msa0881960:intron | 25.0% |
| ! | GCATGATTATTAAGGAAAAA+TGG | + | chr6_1:30402424-30402443 | Msa0881960:intron | 25.0% |
| ! | CCCTTATTAAATGTAATTAG+TGG | + | chr6_1:30402495-30402514 | Msa0881960:intron | 25.0% |
| ! | AAAAGTAATAAATGCTGCAT+TGG | + | chr6_1:30402568-30402587 | Msa0881960:intron | 25.0% |
| !!! | TTTTTTGAACGAATGAGAAA+AGG | + | chr6_1:30402680-30402699 | Msa0881960:intron | 25.0% |
| !!! | TGCTTTGTTCTTCATTTTAT+TGG | + | chr6_1:30402729-30402748 | Msa0881960:intron | 25.0% |
| ! | AAAATGAAATATGTCATGCT+AGG | + | chr6_1:30403000-30403019 | Msa0881960:intron | 25.0% |
| ! | GTTTATATACGATGTGAATT+TGG | + | chr6_1:30403138-30403157 | Msa0881960:intron | 25.0% |
| !!! | GTTTACATTATTGATTTGCT+AGG | - | chr6_1:30403179-30403198 | None:intergenic | 25.0% |
| ! | GTAATAATCAAGACCATAAT+CGG | - | chr6_1:30403527-30403546 | None:intergenic | 25.0% |
| ! | TAATCTAGGTCTGTATATTT+GGG | - | chr6_1:30403578-30403597 | None:intergenic | 25.0% |
| ! | ATAATCTAGGTCTGTATATT+TGG | - | chr6_1:30403579-30403598 | None:intergenic | 25.0% |
| !!! | TACATACATTCCTTTGTTTT+TGG | - | chr6_1:30403642-30403661 | None:intergenic | 25.0% |
| !! | ATAGTATAGGAGTATGTATA+TGG | + | chr6_1:30403694-30403713 | Msa0881960:intron | 25.0% |
| !! | TAGTATAGGAGTATGTATAT+GGG | + | chr6_1:30403695-30403714 | Msa0881960:intron | 25.0% |
| ! | GAATAGTCTTCAACATAAAA+CGG | + | chr6_1:30404114-30404133 | Msa0881960:intron | 25.0% |
| ! | AATAGTCTTCAACATAAAAC+GGG | + | chr6_1:30404115-30404134 | Msa0881960:intron | 25.0% |
| ! | CAGAAAGTCTCAATAATAAA+TGG | - | chr6_1:30404656-30404675 | None:intergenic | 25.0% |
| !! | ACTTTCTATTTGTCTAAAAC+TGG | + | chr6_1:30404913-30404932 | Msa0881960:intron | 25.0% |
| ! | TAGCAGAATTTAATCCTAAA+GGG | + | chr6_1:30405320-30405339 | Msa0881960:intron | 25.0% |
| ! | GACAATTTCTTATGTTACAT+TGG | - | chr6_1:30405362-30405381 | None:intergenic | 25.0% |
| !! | ACAACAATTTTTACCTGAAT+TGG | - | chr6_1:30405614-30405633 | None:intergenic | 25.0% |
| !!! | TCGTGATTATTGTGTTATTT+TGG | + | chr6_1:30405744-30405763 | Msa0881960:intron | 25.0% |
| !!! | TTGGTGTTTTTTCTTTCAAT+CGG | + | chr6_1:30406060-30406079 | Msa0881960:intron | 25.0% |
| !! | TTTATTTGTGTTACTGACTA+AGG | + | chr6_1:30406238-30406257 | Msa0881960:intron | 25.0% |
| ! | TAGTGCATTATGTTATAATC+TGG | - | chr6_1:30406340-30406359 | None:intergenic | 25.0% |
| ! | GATTATAACATAATGCACTA+TGG | + | chr6_1:30406340-30406359 | Msa0881960:CDS | 25.0% |
| ! | ATGTTGGATAGGTTATATAT+TGG | - | chr6_1:30406379-30406398 | None:intergenic | 25.0% |
| ! | ATGTTGAGAATTTACTTGAT+AGG | + | chr6_1:30406461-30406480 | Msa0881960:CDS | 25.0% |
| ! | CAAATTTAATGCTATGTACT+AGG | + | chr6_1:30406651-30406670 | Msa0881960:three_prime_UTR | 25.0% |
| ! | TCCTTTGGAAGAAATCAAAA+TGG | + | chr6_1:30400445-30400464 | Msa0881960:CDS | 30.0% |
| !!! | ACCATTTTGATTTCTTCCAA+AGG | - | chr6_1:30400449-30400468 | None:intergenic | 30.0% |
| ATGTTATTACCTGAAGTTCT+TGG | - | chr6_1:30400534-30400553 | None:intergenic | 30.0% | |
| AAACCACATTCATTAGATTG+AGG | - | chr6_1:30400681-30400700 | None:intergenic | 30.0% | |
| TCAATCTAATGAATGTGGTT+TGG | + | chr6_1:30400680-30400699 | Msa0881960:intron | 30.0% | |
| TTCAACGAGTAGAATTTAGT+TGG | - | chr6_1:30400796-30400815 | None:intergenic | 30.0% | |
| TAAGATTTGACTGGATATGT+CGG | + | chr6_1:30400841-30400860 | Msa0881960:intron | 30.0% | |
| ! | ATTAGCATGTGATTTTGCAA+TGG | + | chr6_1:30400910-30400929 | Msa0881960:intron | 30.0% |
| TTGAAGGTTACAACTAAAGA+TGG | + | chr6_1:30400973-30400992 | Msa0881960:intron | 30.0% | |
| TGAAGGTTACAACTAAAGAT+GGG | + | chr6_1:30400974-30400993 | Msa0881960:intron | 30.0% | |
| GATATTACAACATGGAGTAT+TGG | + | chr6_1:30401071-30401090 | Msa0881960:CDS | 30.0% | |
| GAAAAAAGTTACACAAACAG+TGG | - | chr6_1:30401169-30401188 | None:intergenic | 30.0% | |
| AAATATGGAGTTTGGTTAAG+TGG | - | chr6_1:30401493-30401512 | None:intergenic | 30.0% | |
| CCATGTTAAAATATGGAGTT+TGG | - | chr6_1:30401501-30401520 | None:intergenic | 30.0% | |
| !!! | CCAAACTCCATATTTTAACA+TGG | + | chr6_1:30401498-30401517 | Msa0881960:intron | 30.0% |
| !! | ACACCAATTTTTAGAGAAAG+GGG | - | chr6_1:30401611-30401630 | None:intergenic | 30.0% |
| ! | GAAAATTGACTCATGAGATT+AGG | - | chr6_1:30401748-30401767 | None:intergenic | 30.0% |
| TCCAGCATTTATCAAATGAT+TGG | + | chr6_1:30401885-30401904 | Msa0881960:intron | 30.0% | |
| CCAGCATTTATCAAATGATT+GGG | + | chr6_1:30401886-30401905 | Msa0881960:intron | 30.0% | |
| TTGGGAGTTAAATAACAACT+TGG | + | chr6_1:30401904-30401923 | Msa0881960:intron | 30.0% | |
| TGGGAGTTAAATAACAACTT+GGG | + | chr6_1:30401905-30401924 | Msa0881960:intron | 30.0% | |
| GGTTAAGGATCAAATATAGT+AGG | + | chr6_1:30401975-30401994 | Msa0881960:intron | 30.0% | |
| !!! | GATAACCCTTAATTTTTTGG+AGG | + | chr6_1:30402341-30402360 | Msa0881960:intron | 30.0% |
| GACTATAATTTAGAGACAGA+GGG | - | chr6_1:30402391-30402410 | None:intergenic | 30.0% | |
| ! | CAAAGCATTAAGAATACCAA+TGG | - | chr6_1:30402716-30402735 | None:intergenic | 30.0% |
| TATAAGGTAACTCGTATGTA+CGG | - | chr6_1:30403066-30403085 | None:intergenic | 30.0% | |
| CGTCTATTTAAATCCCAAAA+AGG | - | chr6_1:30403328-30403347 | None:intergenic | 30.0% | |
| AGTCTCTTCTAACTTAACTA+AGG | - | chr6_1:30403405-30403424 | None:intergenic | 30.0% | |
| ! | TTATGGTCTTGATTATTACG+TGG | + | chr6_1:30403528-30403547 | Msa0881960:intron | 30.0% |
| !! | GTTGTTTCTTCCAAAAACAA+AGG | + | chr6_1:30403629-30403648 | Msa0881960:intron | 30.0% |
| TATCTGAACATAATACAACG+TGG | + | chr6_1:30403779-30403798 | Msa0881960:intron | 30.0% | |
| ATCTGAACATAATACAACGT+GGG | + | chr6_1:30403780-30403799 | Msa0881960:intron | 30.0% | |
| ATTACCAACTCTTTCTCTTT+AGG | - | chr6_1:30404239-30404258 | None:intergenic | 30.0% | |
| TGTTAGAAACAAGGTTAGAT+TGG | + | chr6_1:30404465-30404484 | Msa0881960:intron | 30.0% | |
| AACACATAATCAAAAACAGC+AGG | - | chr6_1:30404737-30404756 | None:intergenic | 30.0% | |
| ATTATGTGTTTAGCCAAACA+GGG | + | chr6_1:30404747-30404766 | Msa0881960:CDS | 30.0% | |
| ! | AATTAATTTTCTGCCCTGTT+TGG | - | chr6_1:30404763-30404782 | None:intergenic | 30.0% |
| ! | TCTATTTGTCTAAAACTGGA+AGG | + | chr6_1:30404917-30404936 | Msa0881960:intron | 30.0% |
| ! | AATCAATTTTCCTTCAGAGA+AGG | - | chr6_1:30404978-30404997 | None:intergenic | 30.0% |
| AGTATTTACCTCACCAATAA+AGG | - | chr6_1:30405086-30405105 | None:intergenic | 30.0% | |
| GCACAAAAACATTGTATTGA+AGG | - | chr6_1:30405216-30405235 | None:intergenic | 30.0% | |
| AAATAGTGTAGTGATCTGTT+TGG | - | chr6_1:30405296-30405315 | None:intergenic | 30.0% | |
| AAACAGATCACTACACTATT+TGG | + | chr6_1:30405295-30405314 | Msa0881960:intron | 30.0% | |
| CTAGCAGAATTTAATCCTAA+AGG | + | chr6_1:30405319-30405338 | Msa0881960:intron | 30.0% | |
| ! | ACAATTTTTACCTGAATTGG+TGG | - | chr6_1:30405611-30405630 | None:intergenic | 30.0% |
| ! | TTCTTTGTTGATGTTGATTG+AGG | - | chr6_1:30405676-30405695 | None:intergenic | 30.0% |
| ATCAACATCAACAAAGAACA+TGG | + | chr6_1:30405678-30405697 | Msa0881960:intron | 30.0% | |
| AGAGGTGAAAATCTTACTTT+GGG | - | chr6_1:30405713-30405732 | None:intergenic | 30.0% | |
| TAGAGGTGAAAATCTTACTT+TGG | - | chr6_1:30405714-30405733 | None:intergenic | 30.0% | |
| ATCACGAGTTAAATAAGTAG+AGG | - | chr6_1:30405731-30405750 | None:intergenic | 30.0% | |
| !!! | TGCTAACATTTTTTGCATGA+CGG | - | chr6_1:30405861-30405880 | None:intergenic | 30.0% |
| !! | AATCGGTTGAATTTTGAGAA+GGG | - | chr6_1:30406112-30406131 | None:intergenic | 30.0% |
| AACATCGAAGAATGTATTGA+TGG | + | chr6_1:30406141-30406160 | Msa0881960:intron | 30.0% | |
| TGGATAGGTTATATATTGGT+GGG | - | chr6_1:30406375-30406394 | None:intergenic | 30.0% | |
| TTGGATAGGTTATATATTGG+TGG | - | chr6_1:30406376-30406395 | None:intergenic | 30.0% | |
| TACTTCTCTTATCAACATCA+TGG | - | chr6_1:30406495-30406514 | None:intergenic | 30.0% | |
| ! | TTCATAGAACTTGATAGTCT+AGG | - | chr6_1:30406630-30406649 | None:intergenic | 30.0% |
| ATACAAATGCCAAGAACTTC+AGG | + | chr6_1:30400522-30400541 | Msa0881960:CDS | 35.0% | |
| TCCTACGAATACCTCTAATT+CGG | + | chr6_1:30400563-30400582 | Msa0881960:intron | 35.0% | |
| ! | TCATGGAGTCTAAGATTTGA+CGG | - | chr6_1:30400590-30400609 | None:intergenic | 35.0% |
| TGAGATTTGGCTGAACTAAT+TGG | - | chr6_1:30400734-30400753 | None:intergenic | 35.0% | |
| CCAAATCTCACTCATTAAGT+GGG | + | chr6_1:30400744-30400763 | Msa0881960:intron | 35.0% | |
| TTCAACGACTAAGATTTGAC+TGG | + | chr6_1:30400832-30400851 | Msa0881960:intron | 35.0% | |
| ACTCCATGTTGTAATATCAC+CGG | - | chr6_1:30401069-30401088 | None:intergenic | 35.0% | |
| !! | ATTACAACATGGAGTATTGG+TGG | + | chr6_1:30401074-30401093 | Msa0881960:CDS | 35.0% |
| ! | TTTTCCTTCTCTTTTTCCTG+TGG | + | chr6_1:30401219-30401238 | Msa0881960:intron | 35.0% |
| ATGCACTATCATTACTTGTG+AGG | + | chr6_1:30401446-30401465 | Msa0881960:intron | 35.0% | |
| TAACATGGTGACAAAAAGTG+CGG | + | chr6_1:30401513-30401532 | Msa0881960:intron | 35.0% | |
| CCCAATCATTTGATAAATGC+TGG | - | chr6_1:30401889-30401908 | None:intergenic | 35.0% | |
| AACAACTTGGGCTAATCATT+TGG | + | chr6_1:30401917-30401936 | Msa0881960:intron | 35.0% | |
| TTGGGCTAATCATTTGGTTA+AGG | + | chr6_1:30401923-30401942 | Msa0881960:intron | 35.0% | |
| !!! | GCGTGATAGTACTGTTTTTT+TGG | - | chr6_1:30402188-30402207 | None:intergenic | 35.0% |
| CGACTATAATTTAGAGACAG+AGG | - | chr6_1:30402392-30402411 | None:intergenic | 35.0% | |
| ! | AAAAGGACTGATTTCTCCAT+TGG | + | chr6_1:30402697-30402716 | Msa0881960:intron | 35.0% |
| TTGCTAGGTTTAAGTGTTAG+TGG | - | chr6_1:30403164-30403183 | None:intergenic | 35.0% | |
| ! | ACTAATCCTTCAAGCCTTTT+TGG | + | chr6_1:30403311-30403330 | Msa0881960:intron | 35.0% |
| ! | CTAATCCTTCAAGCCTTTTT+GGG | + | chr6_1:30403312-30403331 | Msa0881960:intron | 35.0% |
| TAAATCCCAAAAAGGCTTGA+AGG | - | chr6_1:30403320-30403339 | None:intergenic | 35.0% | |
| ! | GGTGATTTCAAGTACAAGTT+GGG | - | chr6_1:30403506-30403525 | None:intergenic | 35.0% |
| ! | GTACTTGAAATCACCGATTA+TGG | + | chr6_1:30403511-30403530 | Msa0881960:intron | 35.0% |
| !! | ATTAAAGGCAAGTCTTGTTC+TGG | - | chr6_1:30403838-30403857 | None:intergenic | 35.0% |
| CCATGATCTGCTAGAATTAA+AGG | - | chr6_1:30403853-30403872 | None:intergenic | 35.0% | |
| CCTTTAATTCTAGCAGATCA+TGG | + | chr6_1:30403850-30403869 | Msa0881960:CDS | 35.0% | |
| ! | ATAAACATACTGGGTTAGAG+GGG | - | chr6_1:30403939-30403958 | None:intergenic | 35.0% |
| ! | CATAAACATACTGGGTTAGA+GGG | - | chr6_1:30403940-30403959 | None:intergenic | 35.0% |
| ! | ACATAAACATACTGGGTTAG+AGG | - | chr6_1:30403941-30403960 | None:intergenic | 35.0% |
| GACTTTCTGTGTAAATATGC+AGG | + | chr6_1:30404667-30404686 | Msa0881960:intron | 35.0% | |
| AAAAACAGCAGGTAGATCAT+AGG | - | chr6_1:30404726-30404745 | None:intergenic | 35.0% | |
| GATTATGTGTTTAGCCAAAC+AGG | + | chr6_1:30404746-30404765 | Msa0881960:CDS | 35.0% | |
| GGGCAGAAAATTAATTACGT+TGG | + | chr6_1:30404767-30404786 | Msa0881960:CDS | 35.0% | |
| TGTGGCTTAGATAAGCAATA+GGG | - | chr6_1:30405030-30405049 | None:intergenic | 35.0% | |
| ATGTGGCTTAGATAAGCAAT+AGG | - | chr6_1:30405031-30405050 | None:intergenic | 35.0% | |
| TACCTCACCAATAAAGGATT+TGG | - | chr6_1:30405080-30405099 | None:intergenic | 35.0% | |
| ATAGTACACCAAGTGAAACA+CGG | + | chr6_1:30405144-30405163 | Msa0881960:intron | 35.0% | |
| ! | TTTGAGTTTCCGACACATAT+TGG | - | chr6_1:30405189-30405208 | None:intergenic | 35.0% |
| CTTCTATGTTCTTACCCTTT+AGG | - | chr6_1:30405337-30405356 | None:intergenic | 35.0% | |
| !! | TGAATTTTGAGAAGGGAGTT+GGG | - | chr6_1:30406105-30406124 | None:intergenic | 35.0% |
| !! | TTGAATTTTGAGAAGGGAGT+TGG | - | chr6_1:30406106-30406125 | None:intergenic | 35.0% |
| !! | CAATCGGTTGAATTTTGAGA+AGG | - | chr6_1:30406113-30406132 | None:intergenic | 35.0% |
| CTTCTCAAAATTCAACCGAT+TGG | + | chr6_1:30406111-30406130 | Msa0881960:intron | 35.0% | |
| TCAAAATTCAACCGATTGGA+AGG | + | chr6_1:30406115-30406134 | Msa0881960:intron | 35.0% | |
| ! | TCGATGTTTTTCCTTCCAAT+CGG | - | chr6_1:30406129-30406148 | None:intergenic | 35.0% |
| TATCATGTGGAATGTTGGAT+AGG | - | chr6_1:30406390-30406409 | None:intergenic | 35.0% | |
| AGGTATATCATGTGGAATGT+TGG | - | chr6_1:30406395-30406414 | None:intergenic | 35.0% | |
| ! | ATGAAGAGAGGTATATCATG+TGG | - | chr6_1:30406403-30406422 | None:intergenic | 35.0% |
| ATACCTCTCTTCATTAGCTA+TGG | + | chr6_1:30406409-30406428 | Msa0881960:CDS | 35.0% | |
| ! | TGCTCATGCTGATTACATTA+TGG | + | chr6_1:30406534-30406553 | Msa0881960:CDS | 35.0% |
| ! | GCTCATGCTGATTACATTAT+GGG | + | chr6_1:30406535-30406554 | Msa0881960:CDS | 35.0% |
| ! | CTCATGCTGATTACATTATG+GGG | + | chr6_1:30406536-30406555 | Msa0881960:CDS | 35.0% |
| ACACGACTTGAAGCTTGATA+AGG | - | chr6_1:30400424-30400443 | None:intergenic | 40.0% | |
| ATATGCCTTCATCCAAAGGA+GGG | - | chr6_1:30400477-30400496 | None:intergenic | 40.0% | |
| ! | CATGGAGTCTAAGATTTGAC+GGG | - | chr6_1:30400589-30400608 | None:intergenic | 40.0% |
| CGACCTCAATCTAATGAATG+TGG | + | chr6_1:30400675-30400694 | Msa0881960:intron | 40.0% | |
| TGAACTAATTGGATACGCAG+AGG | - | chr6_1:30400723-30400742 | None:intergenic | 40.0% | |
| GCCAAATCTCACTCATTAAG+TGG | + | chr6_1:30400743-30400762 | Msa0881960:intron | 40.0% | |
| CCCACTTAATGAGTGAGATT+TGG | - | chr6_1:30400747-30400766 | None:intergenic | 40.0% | |
| ATTCCAGAAGGTAGAGTTGA+AGG | + | chr6_1:30401018-30401037 | Msa0881960:CDS | 40.0% | |
| GGTAGAGTTGAAGGTAGAAA+TGG | + | chr6_1:30401027-30401046 | Msa0881960:CDS | 40.0% | |
| AGAGTTGAAGGTAGAAATGG+TGG | + | chr6_1:30401030-30401049 | Msa0881960:CDS | 40.0% | |
| GAGTTGAAGGTAGAAATGGT+GGG | + | chr6_1:30401031-30401050 | Msa0881960:CDS | 40.0% | |
| CAACCGGTGATATTACAACA+TGG | + | chr6_1:30401063-30401082 | Msa0881960:CDS | 40.0% | |
| !! | ATGGAGTATTGGTGGTAAGT+TGG | + | chr6_1:30401082-30401101 | Msa0881960:intron | 40.0% |
| CTAATGCTAAAAGCTACCAC+AGG | - | chr6_1:30401238-30401257 | None:intergenic | 40.0% | |
| ! | CGTCCCCTTTCTCTAAAAAT+TGG | + | chr6_1:30401605-30401624 | Msa0881960:intron | 40.0% |
| TGTCATGCTAGGAAATTCAG+AGG | + | chr6_1:30403011-30403030 | Msa0881960:intron | 40.0% | |
| CAGGAGCAACAACATGTTAA+TGG | + | chr6_1:30403039-30403058 | Msa0881960:intron | 40.0% | |
| ! | CGGTGATTTCAAGTACAAGT+TGG | - | chr6_1:30403507-30403526 | None:intergenic | 40.0% |
| GATTATTACGTGGTCAAGCA+TGG | + | chr6_1:30403538-30403557 | Msa0881960:intron | 40.0% | |
| ACAAAACTTGCCTACTCTTG+TGG | - | chr6_1:30403611-30403630 | None:intergenic | 40.0% | |
| !! | CAGATCATGGCTTTGATGTT+TGG | + | chr6_1:30403863-30403882 | Msa0881960:CDS | 40.0% |
| GTTTGGATTGCTAACACAAG+AGG | + | chr6_1:30403880-30403899 | Msa0881960:CDS | 40.0% | |
| AGGTCCTAAAGAGAAAGAGT+TGG | + | chr6_1:30404232-30404251 | Msa0881960:intron | 40.0% | |
| ! | GTGTAAATATGCAGGCCTTT+TGG | + | chr6_1:30404675-30404694 | Msa0881960:intron | 40.0% |
| !!! | ATATGCAGGCCTTTTGGAAT+TGG | + | chr6_1:30404681-30404700 | Msa0881960:intron | 40.0% |
| TAAAACTGGAAGGCTGTGTT+TGG | + | chr6_1:30404927-30404946 | Msa0881960:intron | 40.0% | |
| !! | ATAAAGCTGCTGATTTCAGC+TGG | - | chr6_1:30405003-30405022 | None:intergenic | 40.0% |
| GTTGCAGCCAAATCCTTTAT+TGG | + | chr6_1:30405070-30405089 | Msa0881960:CDS | 40.0% | |
| AGCCAAATCCTTTATTGGTG+AGG | + | chr6_1:30405075-30405094 | Msa0881960:intron | 40.0% | |
| AACAATGTCCGTGTTTCACT+TGG | - | chr6_1:30405155-30405174 | None:intergenic | 40.0% | |
| TCTCAGACACCAATATGTGT+CGG | + | chr6_1:30405177-30405196 | Msa0881960:intron | 40.0% | |
| AAGTCGTAGCAGTCAATTCT+AGG | - | chr6_1:30405489-30405508 | None:intergenic | 40.0% | |
| ! | GACTTGATGACTGCATTAAC+TGG | + | chr6_1:30405504-30405523 | Msa0881960:intron | 40.0% |
| TACGTAAATGCCACCAATTC+AGG | + | chr6_1:30405598-30405617 | Msa0881960:intron | 40.0% | |
| AACAAAGAACATGGTGCACT+TGG | + | chr6_1:30405687-30405706 | Msa0881960:intron | 40.0% | |
| !! | GAATTTTGAGAAGGGAGTTG+GGG | - | chr6_1:30406104-30406123 | None:intergenic | 40.0% |
| AACTATGCAGTTGTTAGACG+TGG | + | chr6_1:30406286-30406305 | Msa0881960:intron | 40.0% | |
| ACTATGCAGTTGTTAGACGT+GGG | + | chr6_1:30406287-30406306 | Msa0881960:intron | 40.0% | |
| GCTATGTACTAGGTTGTCAT+TGG | + | chr6_1:30406661-30406680 | Msa0881960:three_prime_UTR | 40.0% | |
| AGCTCATAGAGAGACCAACA+TGG | + | chr6_1:30400336-30400355 | Msa0881960:exon | 45.0% | |
| GAGACCAACATGGTTTCTCT+AGG | + | chr6_1:30400346-30400365 | Msa0881960:exon | 45.0% | |
| GAAGCCTAGAGAAACCATGT+TGG | - | chr6_1:30400353-30400372 | None:intergenic | 45.0% | |
| ! | AAATGGTGTTAGCCCTCCTT+TGG | + | chr6_1:30400462-30400481 | Msa0881960:CDS | 45.0% |
| CATATGCCTTCATCCAAAGG+AGG | - | chr6_1:30400478-30400497 | None:intergenic | 45.0% | |
| GCACATATGCCTTCATCCAA+AGG | - | chr6_1:30400481-30400500 | None:intergenic | 45.0% | |
| GCTTCTGCTGTCATTGTTCA+TGG | + | chr6_1:30400499-30400518 | Msa0881960:CDS | 45.0% | |
| !! | GCCGAATTAGAGGTATTCGT+AGG | - | chr6_1:30400567-30400586 | None:intergenic | 45.0% |
| ! | TGAATGTGGTTTGGCTGAAC+AGG | + | chr6_1:30400689-30400708 | Msa0881960:intron | 45.0% |
| GATATGTCGGACAACCACAA+GGG | + | chr6_1:30400854-30400873 | Msa0881960:intron | 45.0% | |
| ! | GGTACATTTTGAGCCTGCAA+AGG | + | chr6_1:30400995-30401014 | Msa0881960:CDS | 45.0% |
| !! | TACCTTCTGGAATCCTTTGC+AGG | - | chr6_1:30401011-30401030 | None:intergenic | 45.0% |
| CTACCTTCAACTCTACCTTC+TGG | - | chr6_1:30401024-30401043 | None:intergenic | 45.0% | |
| ! | AAGGTAGAAATGGTGGGACT+AGG | + | chr6_1:30401037-30401056 | Msa0881960:CDS | 45.0% |
| GCTACCACAGGAAAAAGAGA+AGG | - | chr6_1:30401226-30401245 | None:intergenic | 45.0% | |
| ATTCCGCGTCTGTTACATTG+TGG | + | chr6_1:30401537-30401556 | Msa0881960:intron | 45.0% | |
| AAAATGTTAACCAGTGCCCC+CGG | + | chr6_1:30401946-30401965 | Msa0881960:intron | 45.0% | |
| TCTTGTTAACCAGTGTTCCG+GGG | - | chr6_1:30402094-30402113 | None:intergenic | 45.0% | |
| ! | GTCTTGTTAACCAGTGTTCC+GGG | - | chr6_1:30402095-30402114 | None:intergenic | 45.0% |
| !! | GGTCTTGTTAACCAGTGTTC+CGG | - | chr6_1:30402096-30402115 | None:intergenic | 45.0% |
| ! | GACAGAGGGAGTATGAGAAA+AGG | - | chr6_1:30402377-30402396 | None:intergenic | 45.0% |
| AACGCCTTATCCCACTAAGT+GGG | + | chr6_1:30402970-30402989 | Msa0881960:intron | 45.0% | |
| !! | AGGAAATTCAGAGGAGTGTC+AGG | + | chr6_1:30403020-30403039 | Msa0881960:intron | 45.0% |
| ACATAATACAACGTGGGTGC+AGG | + | chr6_1:30403786-30403805 | Msa0881960:intron | 45.0% | |
| !! | AAGGCAAGTCTTGTTCTGGA+GGG | - | chr6_1:30403834-30403853 | None:intergenic | 45.0% |
| !! | AAAGGCAAGTCTTGTTCTGG+AGG | - | chr6_1:30403835-30403854 | None:intergenic | 45.0% |
| !!! | AGGCCTTTTGGAATTGGTCT+TGG | + | chr6_1:30404687-30404706 | Msa0881960:intron | 45.0% |
| !!! | GGCCTTTTGGAATTGGTCTT+GGG | + | chr6_1:30404688-30404707 | Msa0881960:intron | 45.0% |
| GTCCCAAGACCAATTCCAAA+AGG | - | chr6_1:30404693-30404712 | None:intergenic | 45.0% | |
| TAATTACGTTGGCCACTCTC+TGG | + | chr6_1:30404778-30404797 | Msa0881960:CDS | 45.0% | |
| ! | AGTAATGGAGTACCAGAGAG+TGG | - | chr6_1:30404793-30404812 | None:intergenic | 45.0% |
| ! | GCTTTAGCTTCCTTCTCTGA+AGG | + | chr6_1:30404965-30404984 | Msa0881960:CDS | 45.0% |
| !! | GACTTGAGAAAGGCATCAAC+AGG | - | chr6_1:30405453-30405472 | None:intergenic | 45.0% |
| AGCACAGAGAGACTTGAGAA+AGG | - | chr6_1:30405463-30405482 | None:intergenic | 45.0% | |
| CTATGCAGTTGTTAGACGTG+GGG | + | chr6_1:30406288-30406307 | Msa0881960:intron | 45.0% | |
| CCTCCATAGCTAATGAAGAG+AGG | - | chr6_1:30406415-30406434 | None:intergenic | 45.0% | |
| CCTCTCTTCATTAGCTATGG+AGG | + | chr6_1:30406412-30406431 | Msa0881960:CDS | 45.0% | |
| !! | AAATATATAAGTTTATAAAA+TGG | + | chr6_1:30401294-30401313 | Msa0881960:intron | 5.0% |
| !! | TATATATAAAATATTAATTG+GGG | - | chr6_1:30405401-30405420 | None:intergenic | 5.0% |
| !! | ATTATAATTGAAATATTTAA+AGG | - | chr6_1:30406026-30406045 | None:intergenic | 5.0% |
| GCTTCAAGTCGTGTCTCCTT+TGG | + | chr6_1:30400430-30400449 | Msa0881960:CDS | 50.0% | |
| GTTAGCCCTCCTTTGGATGA+AGG | + | chr6_1:30400469-30400488 | Msa0881960:CDS | 50.0% | |
| ! | GATTTGACGGGCCGAATTAG+AGG | - | chr6_1:30400577-30400596 | None:intergenic | 50.0% |
| ! | TGTGGTTTGGCTGAACAGGT+TGG | + | chr6_1:30400693-30400712 | Msa0881960:intron | 50.0% |
| GACAAATTGGACGACTGCAG+TGG | - | chr6_1:30400774-30400793 | None:intergenic | 50.0% | |
| GGATATGTCGGACAACCACA+AGG | + | chr6_1:30400853-30400872 | Msa0881960:intron | 50.0% | |
| AGCCTGCAAAGGATTCCAGA+AGG | + | chr6_1:30401006-30401025 | Msa0881960:CDS | 50.0% | |
| TGGTGGGACTAGGAAACAAC+CGG | + | chr6_1:30401047-30401066 | Msa0881960:CDS | 50.0% | |
| ACGCCACAATGTAACAGACG+CGG | - | chr6_1:30401543-30401562 | None:intergenic | 50.0% | |
| AAATGTTAACCAGTGCCCCC+GGG | + | chr6_1:30401947-30401966 | Msa0881960:intron | 50.0% | |
| TTGATCCTTAACCTGTGCCC+CGG | - | chr6_1:30401968-30401987 | None:intergenic | 50.0% | |
| CAACGCCTTATCCCACTAAG+TGG | + | chr6_1:30402969-30402988 | Msa0881960:intron | 50.0% | |
| ACGCCTTATCCCACTAAGTG+GGG | + | chr6_1:30402971-30402990 | Msa0881960:intron | 50.0% | |
| CTTATCCCACTAAGTGGGGT+CGG | + | chr6_1:30402975-30402994 | Msa0881960:intron | 50.0% | |
| ! | TTTTGCCGACCCCACTTAGT+GGG | - | chr6_1:30402983-30403002 | None:intergenic | 50.0% |
| ! | TTTTTGCCGACCCCACTTAG+TGG | - | chr6_1:30402984-30403003 | None:intergenic | 50.0% |
| ACTTGCCTACTCTTGTGGCA+GGG | - | chr6_1:30403606-30403625 | None:intergenic | 50.0% | |
| AACTTGCCTACTCTTGTGGC+AGG | - | chr6_1:30403607-30403626 | None:intergenic | 50.0% | |
| AATACAACGTGGGTGCAGGA+TGG | + | chr6_1:30403790-30403809 | Msa0881960:intron | 50.0% | |
| TAGTCGCCGACATGTCTCAT+TGG | + | chr6_1:30403912-30403931 | Msa0881960:CDS | 50.0% | |
| AGGGGTCCAATGAGACATGT+CGG | - | chr6_1:30403921-30403940 | None:intergenic | 50.0% | |
| AGCCACATGAACACTGCACT+TGG | + | chr6_1:30405043-30405062 | Msa0881960:CDS | 50.0% | |
| CACCAAGTGCAGTGTTCATG+TGG | - | chr6_1:30405048-30405067 | None:intergenic | 50.0% | |
| AATGTTAACCAGTGCCCCCG+GGG | + | chr6_1:30401948-30401967 | Msa0881960:intron | 55.0% | |
| TGATCCTTAACCTGTGCCCC+GGG | - | chr6_1:30401967-30401986 | None:intergenic | 55.0% | |
| GACTTCCTTAACCAGTGCCC+CGG | + | chr6_1:30402074-30402093 | Msa0881960:intron | 55.0% | |
| CGACCCCACTTAGTGGGATA+AGG | - | chr6_1:30402977-30402996 | None:intergenic | 55.0% | |
| GTGGCAGGGCTGCATAATCT+AGG | - | chr6_1:30403592-30403611 | None:intergenic | 55.0% | |
| ACTGGAAGGCTGTGTTTGGC+AGG | + | chr6_1:30404931-30404950 | Msa0881960:intron | 55.0% | |
| CTGGAAGGCTGTGTTTGGCA+GGG | + | chr6_1:30404932-30404951 | Msa0881960:intron | 55.0% | |
| AGAAGGGAGTTGGGGCACAT+TGG | - | chr6_1:30406096-30406115 | None:intergenic | 55.0% | |
| ATCCTTAACCTGTGCCCCGG+GGG | - | chr6_1:30401965-30401984 | None:intergenic | 60.0% | |
| GATCCTTAACCTGTGCCCCG+GGG | - | chr6_1:30401966-30401985 | None:intergenic | 60.0% | |
| !! | GTGTTCCGGGGCACTGGTTA+AGG | - | chr6_1:30402082-30402101 | None:intergenic | 60.0% |
| TAACCAGTGCCCCGGAACAC+TGG | + | chr6_1:30402082-30402101 | Msa0881960:intron | 60.0% | |
| TAACCAGTGTTCCGGGGCAC+TGG | - | chr6_1:30402088-30402107 | None:intergenic | 60.0% | |
| TGCAGCCCTGCCACAAGAGT+AGG | + | chr6_1:30403598-30403617 | Msa0881960:intron | 60.0% | |
| GGGTGCAGGATGGCATGACA+TGG | + | chr6_1:30403800-30403819 | Msa0881960:intron | 60.0% | |
| GGGAGTTGGGGCACATTGGT+CGG | - | chr6_1:30406092-30406111 | None:intergenic | 60.0% | |
| TGCCCCCGGGGCACAGGTTA+AGG | + | chr6_1:30401960-30401979 | Msa0881960:intron | 70.0% | |
| AACCAGTGCCCCCGGGGCAC+AGG | + | chr6_1:30401954-30401973 | Msa0881960:intron | 75.0% | |
| ! | AACCTGTGCCCCGGGGGCAC+TGG | - | chr6_1:30401959-30401978 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 30400223 | 30406735 | 30400223 | ID=Msa0881960;Name=Msa0881960 |
| chr6_1 | mRNA | 30400223 | 30406735 | 30400223 | ID=Msa0881960-mRNA-1;Parent=Msa0881960;Name=Msa0881960-mRNA-1;_AED=0.18;_eAED=0.18;_QI=132|0.8|0.83|1|1|1|6|114|340 |
| chr6_1 | exon | 30400223 | 30400543 | 30400223 | ID=Msa0881960-mRNA-1:exon:7578;Parent=Msa0881960-mRNA-1 |
| chr6_1 | exon | 30400979 | 30401095 | 30400979 | ID=Msa0881960-mRNA-1:exon:7579;Parent=Msa0881960-mRNA-1 |
| chr6_1 | exon | 30403808 | 30403948 | 30403808 | ID=Msa0881960-mRNA-1:exon:7580;Parent=Msa0881960-mRNA-1 |
| chr6_1 | exon | 30404689 | 30404799 | 30404689 | ID=Msa0881960-mRNA-1:exon:7581;Parent=Msa0881960-mRNA-1 |
| chr6_1 | exon | 30404953 | 30405091 | 30404953 | ID=Msa0881960-mRNA-1:exon:7582;Parent=Msa0881960-mRNA-1 |
| chr6_1 | exon | 30406296 | 30406735 | 30406296 | ID=Msa0881960-mRNA-1:exon:7583;Parent=Msa0881960-mRNA-1 |
| chr6_1 | five_prime_UTR | 30400223 | 30400354 | 30400223 | ID=Msa0881960-mRNA-1:five_prime_utr;Parent=Msa0881960-mRNA-1 |
| chr6_1 | CDS | 30400355 | 30400543 | 30400355 | ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1 |
| chr6_1 | CDS | 30400979 | 30401095 | 30400979 | ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1 |
| chr6_1 | CDS | 30403808 | 30403948 | 30403808 | ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1 |
| chr6_1 | CDS | 30404689 | 30404799 | 30404689 | ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1 |
| chr6_1 | CDS | 30404953 | 30405091 | 30404953 | ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1 |
| chr6_1 | CDS | 30406296 | 30406621 | 30406296 | ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1 |
| chr6_1 | three_prime_UTR | 30406622 | 30406735 | 30406622 | ID=Msa0881960-mRNA-1:three_prime_utr;Parent=Msa0881960-mRNA-1 |
| Gene Sequence |
| Protein sequence |
