AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0881960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881960 MtrunA17_Chr7g0225611 68.447 412 56 5 1 338 1 412 0.0 548
Msa0881960 MtrunA17_Chr6g0459361 62.069 232 81 5 5 232 5 233 2.41e-103 303
Msa0881960 MtrunA17_Chr6g0459401 57.647 255 101 5 1 251 1 252 3.97e-103 303
Msa0881960 MtrunA17_Chr6g0459421 58.468 248 96 5 1 244 1 245 8.23e-102 300
Msa0881960 MtrunA17_Chr6g0459381 61.017 236 85 4 1 232 1 233 1.72e-100 296
Msa0881960 MtrunA17_Chr6g0462811 43.161 329 145 6 44 336 41 363 4.04e-93 281
Msa0881960 MtrunA17_Chr5g0438751 48.035 229 112 2 17 244 12 234 1.04e-71 228
Msa0881960 MtrunA17_Chr5g0438751 51.923 104 50 0 233 336 297 400 4.08e-32 124
Msa0881960 MtrunA17_Chr3g0120041 55.851 188 80 2 45 232 45 229 1.08e-71 223
Msa0881960 MtrunA17_Chr7g0250081 52.105 190 88 1 44 233 40 226 3.44e-67 216
Msa0881960 MtrunA17_Chr7g0250081 49.038 104 53 0 233 336 300 403 3.96e-30 118
Msa0881960 MtrunA17_Chr3g0119931 54.070 172 76 1 46 217 42 210 8.33e-65 205
Msa0881960 MtrunA17_Chr3g0120021 48.387 217 86 2 40 233 36 249 1.96e-64 210
Msa0881960 MtrunA17_Chr3g0120021 48.077 104 54 0 233 336 341 444 1.38e-27 112
Msa0881960 MtrunA17_Chr7g0250091 32.564 390 155 9 9 337 10 352 1.57e-57 190
Msa0881960 MtrunA17_Chr1g0207891 42.289 201 110 2 38 232 25 225 1.44e-50 173
Msa0881960 MtrunA17_Chr1g0207891 35.185 108 65 2 231 338 297 399 1.29e-17 83.2
Msa0881960 MtrunA17_Chr5g0394731 54.237 118 49 1 116 233 20 132 8.36e-38 132
Msa0881960 MtrunA17_Chr6g0459431 47.407 135 66 2 208 337 7 141 2.86e-37 130
Msa0881960 MtrunA17_Chr6g0459411 47.407 135 66 2 208 337 7 141 3.94e-37 130
Msa0881960 MtrunA17_Chr6g0459391 57.143 105 44 1 234 337 69 173 3.23e-36 129
Msa0881960 MtrunA17_Chr6g0462831 31.923 260 103 6 150 336 4 262 9.36e-34 125
Msa0881960 MtrunA17_Chr6g0459371 57.955 88 36 1 251 337 1 88 2.37e-30 110
Msa0881960 MtrunA17_Chr3g0120031 45.690 116 58 2 226 336 56 171 3.21e-29 110
Msa0881960 MtrunA17_Chr3g0119941 45.192 104 57 0 233 336 63 166 1.19e-26 103
Msa0881960 MtrunA17_Chr8g0390731 27.830 212 122 6 44 233 294 496 3.61e-14 73.6
Msa0881960 MtrunA17_Chr6g0484931 34.043 141 84 3 31 171 275 406 4.43e-14 73.2
Msa0881960 MtrunA17_Chr6g0462821 51.064 47 22 1 102 148 1 46 2.75e-11 58.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0881960 AT5G14180.5 57.322 239 93 5 12 243 14 250 9.96e-94 281
Msa0881960 AT5G14180.3 57.322 239 93 5 12 243 14 250 2.01e-93 281
Msa0881960 AT5G14180.1 57.322 239 93 5 12 243 14 250 3.04e-92 281
Msa0881960 AT5G14180.1 60.952 105 41 0 233 337 312 416 1.17e-39 145
Msa0881960 AT5G14180.4 65.942 138 47 0 102 239 7 144 1.02e-63 205
Msa0881960 AT5G14180.4 60.952 105 41 0 233 337 212 316 2.53e-40 144
Msa0881960 AT5G14180.2 65.185 135 47 0 105 239 1 135 1.50e-61 199
Msa0881960 AT5G14180.2 60.952 105 41 0 233 337 203 307 2.78e-40 144
Msa0881960 AT2G15230.1 31.856 361 166 7 47 335 32 384 5.05e-57 190
Msa0881960 AT1G73920.2 28.636 220 124 6 44 241 223 431 4.14e-15 76.6
Msa0881960 AT1G73920.1 28.636 220 124 6 44 241 292 500 6.65e-15 76.3
Msa0881960 AT1G18460.1 35.156 128 74 3 44 171 290 408 1.07e-13 72.4

Find 84 sgRNAs with CRISPR-Local

Find 342 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATGATCTGCTAGAATTAA+AGG 0.174183 6_1:-30403850 None:intergenic
TGCTCATGCTGATTACATTA+TGG 0.187385 6_1:+30406534 Msa0881960:CDS
GTTGCAGCCAAATCCTTTAT+TGG 0.270019 6_1:+30405070 Msa0881960:CDS
AGTATTTACCTCACCAATAA+AGG 0.285153 6_1:-30405083 None:intergenic
CAGATCATGGCTTTGATGTT+TGG 0.292443 6_1:+30403863 Msa0881960:CDS
TACCTCACCAATAAAGGATT+TGG 0.301945 6_1:-30405077 None:intergenic
TACCTTCTGGAATCCTTTGC+AGG 0.303254 6_1:-30401008 None:intergenic
GCTCATGCTGATTACATTAT+GGG 0.304433 6_1:+30406535 Msa0881960:CDS
ATATGTGTATTTCTTACAAT+AGG 0.314683 6_1:-30400257 None:intergenic
ATGTTATTACCTGAAGTTCT+TGG 0.316168 6_1:-30400531 None:intergenic
GTGTAAATATGCAGGCCTTT+TGG 0.322829 6_1:+30404675 Msa0881960:intron
GCTTCTGCTGTCATTGTTCA+TGG 0.326523 6_1:+30400499 Msa0881960:CDS
GTAAGAAATACACATATAAA+AGG 0.329004 6_1:+30400263 Msa0881960:five_prime_UTR
ATTAAAGGCAAGTCTTGTTC+TGG 0.333137 6_1:-30403835 None:intergenic
GAAAGAAAGTGAAATGAAAA+AGG 0.340300 6_1:-30400234 None:intergenic
GATTATGTGTTTAGCCAAAC+AGG 0.355642 6_1:+30404746 Msa0881960:CDS
GCTTCAAGTCGTGTCTCCTT+TGG 0.358205 6_1:+30400430 Msa0881960:CDS
CAAATTTAATGCTATGTACT+AGG 0.361127 6_1:+30406651 Msa0881960:three_prime_UTR
TCCTTTGGAAGAAATCAAAA+TGG 0.378214 6_1:+30400445 Msa0881960:CDS
TTGAAGGTTACAACTAAAGA+TGG 0.383740 6_1:+30400973 Msa0881960:intron
ATACAAATGCCAAGAACTTC+AGG 0.389343 6_1:+30400522 Msa0881960:CDS
ATGTTGAGAATTTACTTGAT+AGG 0.389542 6_1:+30406461 Msa0881960:CDS
TATGTGTATTTCTTACAATA+GGG 0.395124 6_1:-30400256 None:intergenic
GGTAGAGTTGAAGGTAGAAA+TGG 0.395667 6_1:+30401027 Msa0881960:CDS
CTACCTTCAACTCTACCTTC+TGG 0.406112 6_1:-30401021 None:intergenic
AAATGGTGTTAGCCCTCCTT+TGG 0.406335 6_1:+30400462 Msa0881960:CDS
ATGTGGCTTAGATAAGCAAT+AGG 0.409857 6_1:-30405028 None:intergenic
CCTTTAATTCTAGCAGATCA+TGG 0.423751 6_1:+30403850 Msa0881960:CDS
ACATAAACATACTGGGTTAG+AGG 0.428314 6_1:-30403938 None:intergenic
TAGTGCATTATGTTATAATC+TGG 0.439008 6_1:-30406337 None:intergenic
GTTAGCCCTCCTTTGGATGA+AGG 0.456402 6_1:+30400469 Msa0881960:CDS
ATTCCAGAAGGTAGAGTTGA+AGG 0.468226 6_1:+30401018 Msa0881960:CDS
CATAAACATACTGGGTTAGA+GGG 0.468329 6_1:-30403937 None:intergenic
AAGGTAGAAATGGTGGGACT+AGG 0.475923 6_1:+30401037 Msa0881960:CDS
TAATTACGTTGGCCACTCTC+TGG 0.476171 6_1:+30404778 Msa0881960:CDS
GATTATAACATAATGCACTA+TGG 0.477158 6_1:+30406340 Msa0881960:CDS
ATGTTGGATAGGTTATATAT+TGG 0.480961 6_1:-30406376 None:intergenic
TTGGATAGGTTATATATTGG+TGG 0.488015 6_1:-30406373 None:intergenic
ATACCTCTCTTCATTAGCTA+TGG 0.502974 6_1:+30406409 Msa0881960:CDS
GCTATGTACTAGGTTGTCAT+TGG 0.503802 6_1:+30406661 Msa0881960:three_prime_UTR
AGGTATATCATGTGGAATGT+TGG 0.504399 6_1:-30406392 None:intergenic
AGAGTTGAAGGTAGAAATGG+TGG 0.507614 6_1:+30401030 Msa0881960:CDS
ATAAAGCTGCTGATTTCAGC+TGG 0.510041 6_1:-30405000 None:intergenic
AGCCACATGAACACTGCACT+TGG 0.518331 6_1:+30405043 Msa0881960:CDS
TACTTCTCTTATCAACATCA+TGG 0.520662 6_1:-30406492 None:intergenic
TTCATAGAACTTGATAGTCT+AGG 0.524020 6_1:-30406627 None:intergenic
GCTTTAGCTTCCTTCTCTGA+AGG 0.525067 6_1:+30404965 Msa0881960:CDS
TGGATAGGTTATATATTGGT+GGG 0.529275 6_1:-30406372 None:intergenic
GAGACCAACATGGTTTCTCT+AGG 0.529963 6_1:+30400346 Msa0881960:exon
GATATTACAACATGGAGTAT+TGG 0.531184 6_1:+30401071 Msa0881960:CDS
AACTATGCAGTTGTTAGACG+TGG 0.537740 6_1:+30406286 Msa0881960:intron
ACACGACTTGAAGCTTGATA+AGG 0.543173 6_1:-30400421 None:intergenic
TGGTGGGACTAGGAAACAAC+CGG 0.545655 6_1:+30401047 Msa0881960:CDS
TATCATGTGGAATGTTGGAT+AGG 0.547791 6_1:-30406387 None:intergenic
GTCCCAAGACCAATTCCAAA+AGG 0.554581 6_1:-30404690 None:intergenic
CTCATGCTGATTACATTATG+GGG 0.555559 6_1:+30406536 Msa0881960:CDS
TGTGGCTTAGATAAGCAATA+GGG 0.559261 6_1:-30405027 None:intergenic
TGAAGGTTACAACTAAAGAT+GGG 0.560420 6_1:+30400974 Msa0881960:intron
TAGTCGCCGACATGTCTCAT+TGG 0.565789 6_1:+30403912 Msa0881960:CDS
AAAGGCAAGTCTTGTTCTGG+AGG 0.567063 6_1:-30403832 None:intergenic
CCTCTCTTCATTAGCTATGG+AGG 0.571727 6_1:+30406412 Msa0881960:CDS
GCACATATGCCTTCATCCAA+AGG 0.576347 6_1:-30400478 None:intergenic
CACCAAGTGCAGTGTTCATG+TGG 0.576864 6_1:-30405045 None:intergenic
GTTTGGATTGCTAACACAAG+AGG 0.581774 6_1:+30403880 Msa0881960:CDS
ATTACAACATGGAGTATTGG+TGG 0.587960 6_1:+30401074 Msa0881960:CDS
ACTATGCAGTTGTTAGACGT+GGG 0.595087 6_1:+30406287 Msa0881960:intron
ACTCCATGTTGTAATATCAC+CGG 0.596325 6_1:-30401066 None:intergenic
GGGCAGAAAATTAATTACGT+TGG 0.599333 6_1:+30404767 Msa0881960:CDS
AAGGCAAGTCTTGTTCTGGA+GGG 0.605642 6_1:-30403831 None:intergenic
GGGTGCAGGATGGCATGACA+TGG 0.627156 6_1:+30403800 Msa0881960:intron
CATATGCCTTCATCCAAAGG+AGG 0.627342 6_1:-30400475 None:intergenic
ATGAAGAGAGGTATATCATG+TGG 0.628119 6_1:-30406400 None:intergenic
AGGGGTCCAATGAGACATGT+CGG 0.633111 6_1:-30403918 None:intergenic
ATATGCCTTCATCCAAAGGA+GGG 0.644823 6_1:-30400474 None:intergenic
ATTATGTGTTTAGCCAAACA+GGG 0.645703 6_1:+30404747 Msa0881960:CDS
CTATGCAGTTGTTAGACGTG+GGG 0.648539 6_1:+30406288 Msa0881960:intron
AGTAATGGAGTACCAGAGAG+TGG 0.649875 6_1:-30404790 None:intergenic
CCTCCATAGCTAATGAAGAG+AGG 0.650648 6_1:-30406412 None:intergenic
CAACCGGTGATATTACAACA+TGG 0.652027 6_1:+30401063 Msa0881960:CDS
ATAAACATACTGGGTTAGAG+GGG 0.656553 6_1:-30403936 None:intergenic
AGCCTGCAAAGGATTCCAGA+AGG 0.663410 6_1:+30401006 Msa0881960:CDS
GAGTTGAAGGTAGAAATGGT+GGG 0.680227 6_1:+30401031 Msa0881960:CDS
GAAGCCTAGAGAAACCATGT+TGG 0.694754 6_1:-30400350 None:intergenic
AGCTCATAGAGAGACCAACA+TGG 0.737781 6_1:+30400336 Msa0881960:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATAAAATATTAATT+GGG - chr6_1:30405402-30405421 None:intergenic 0.0%
!! TATATATATAAAATATTAAT+TGG - chr6_1:30405403-30405422 None:intergenic 0.0%
!! TATATCTTCATAAAAAATTA+TGG + chr6_1:30402864-30402883 Msa0881960:intron 10.0%
!! AATAATAATAAAATGATTTG+TGG - chr6_1:30403258-30403277 None:intergenic 10.0%
!!! CATAATTTTATACATAAAAA+AGG + chr6_1:30405238-30405257 Msa0881960:intron 10.0%
!! TATAGTAAAAATGTTTATAT+TGG - chr6_1:30405561-30405580 None:intergenic 10.0%
!!! GAAAATAGAAAATATTTTCA+TGG - chr6_1:30400607-30400626 None:intergenic 15.0%
!!! TTTTCATTTCTTAAAATTTG+TGG + chr6_1:30400622-30400641 Msa0881960:intron 15.0%
!!! CATGCATTTTATTATATTTT+TGG - chr6_1:30401133-30401152 None:intergenic 15.0%
!! TATATAAGTTTATAAAATGG+AGG + chr6_1:30401297-30401316 Msa0881960:intron 15.0%
!!! TAAAGTTTTTTTCCAATAAA+TGG + chr6_1:30402301-30402320 Msa0881960:intron 15.0%
!!! AAAGTTTTTTTCCAATAAAT+GGG + chr6_1:30402302-30402321 Msa0881960:intron 15.0%
!! TGAATGAAATTCAATAAATA+AGG + chr6_1:30402529-30402548 Msa0881960:intron 15.0%
!! GAATGAAATTCAATAAATAA+GGG + chr6_1:30402530-30402549 Msa0881960:intron 15.0%
!! TAATTGTTAATTAGAAGAAA+TGG - chr6_1:30403227-30403246 None:intergenic 15.0%
!! ATTACTATTACATTAATTAG+AGG - chr6_1:30403676-30403695 None:intergenic 15.0%
!! TAATGTAATAGTAATAGTAT+AGG + chr6_1:30403681-30403700 Msa0881960:intron 15.0%
!! ATTACTATTACATTAATTAG+AGG - chr6_1:30403676-30403695 None:intergenic 15.0%
!! TCTAATTAATGTAATAGTAA+TGG + chr6_1:30403675-30403694 Msa0881960:intron 15.0%
!!! AATATTTTTTTGTTTGTTTG+AGG + chr6_1:30403972-30403991 Msa0881960:intron 15.0%
!!! TTTGTTTATGCTTATTTTTA+AGG + chr6_1:30404072-30404091 Msa0881960:intron 15.0%
!!! TACAATAAAGGTTTTTTTTT+TGG - chr6_1:30404537-30404556 None:intergenic 15.0%
!! TTAAGGATTTATTACAATAA+AGG - chr6_1:30404549-30404568 None:intergenic 15.0%
!! AAAAATTTATGTATTAGAGA+AGG - chr6_1:30404610-30404629 None:intergenic 15.0%
!! TAAGAATTATAATTGATTGA+TGG + chr6_1:30405936-30405955 Msa0881960:intron 15.0%
!! CTAACATTTAATTAGATATT+TGG + chr6_1:30406166-30406185 Msa0881960:intron 15.0%
!! TATGTGTATTTCTTACAATA+GGG - chr6_1:30400259-30400278 None:intergenic 20.0%
!! ATATGTGTATTTCTTACAAT+AGG - chr6_1:30400260-30400279 None:intergenic 20.0%
!! GTAAGAAATACACATATAAA+AGG + chr6_1:30400263-30400282 Msa0881960:five_prime_UTR 20.0%
!!! TAATTTTGAATAGTATGAGA+TGG - chr6_1:30400313-30400332 None:intergenic 20.0%
!! TTTATCTGGATATGAAAAAA+AGG - chr6_1:30401191-30401210 None:intergenic 20.0%
!! AAAAATGTAACCATAAAACT+TGG + chr6_1:30401672-30401691 Msa0881960:intron 20.0%
!!! AAAATAATAGCCAAGTTTTA+TGG - chr6_1:30401685-30401704 None:intergenic 20.0%
!!! CATTTTTCTCTTAGATATTT+TGG - chr6_1:30401717-30401736 None:intergenic 20.0%
!!! TTCGTTGTTATTTAATCAAA+GGG - chr6_1:30402117-30402136 None:intergenic 20.0%
!!! ATTCGTTGTTATTTAATCAA+AGG - chr6_1:30402118-30402137 None:intergenic 20.0%
!!! TTTTTGGTGAAAAAATTGTT+AGG - chr6_1:30402172-30402191 None:intergenic 20.0%
!!! CATATTTTTGTGTTACTTTT+CGG + chr6_1:30402238-30402257 Msa0881960:intron 20.0%
!! CCACTAATTACATTTAATAA+GGG - chr6_1:30402498-30402517 None:intergenic 20.0%
!! TCCACTAATTACATTTAATA+AGG - chr6_1:30402499-30402518 None:intergenic 20.0%
!! ATAAAGAGAATGTTGTTATA+AGG - chr6_1:30403082-30403101 None:intergenic 20.0%
!! AAGGAATGTATGTATATATA+TGG + chr6_1:30403648-30403667 Msa0881960:intron 20.0%
!! AGGAATGTATGTATATATAT+GGG + chr6_1:30403649-30403668 Msa0881960:intron 20.0%
!! TAATGTAATAGTAATGGTAT+AGG + chr6_1:30403727-30403746 Msa0881960:intron 20.0%
!! CAAAAAAACATAAACATACT+GGG - chr6_1:30403948-30403967 None:intergenic 20.0%
!! ACAAAAAAACATAAACATAC+TGG - chr6_1:30403949-30403968 None:intergenic 20.0%
!!! ATGCTTATTTTTAAGGAAAA+TGG + chr6_1:30404079-30404098 Msa0881960:intron 20.0%
!! TGAAGACTATTCAAATATTT+AGG - chr6_1:30404106-30404125 None:intergenic 20.0%
!!! TAATTTTGACTTGTATTTGT+AGG - chr6_1:30404175-30404194 None:intergenic 20.0%
!! AATTATGTTAAATAAGTAGC+TGG - chr6_1:30404304-30404323 None:intergenic 20.0%
!! GAAAATGCTAACAATAAAAT+TGG - chr6_1:30404407-30404426 None:intergenic 20.0%
!! TCCTTAAATTATTTATTGTG+TGG + chr6_1:30404425-30404444 Msa0881960:intron 20.0%
!! ACCACACAATAAATAATTTA+AGG - chr6_1:30404429-30404448 None:intergenic 20.0%
!! AATTAAAACTGTTAGAAACA+AGG + chr6_1:30404456-30404475 Msa0881960:intron 20.0%
!! AAGATACACTAATTTCATTA+AGG - chr6_1:30404566-30404585 None:intergenic 20.0%
!! TCATGTAAAAAAGTAAGTAA+TGG - chr6_1:30404808-30404827 None:intergenic 20.0%
!! GACAAATAGAAAGTAAAAAA+GGG - chr6_1:30404907-30404926 None:intergenic 20.0%
!! AGACAAATAGAAAGTAAAAA+AGG - chr6_1:30404908-30404927 None:intergenic 20.0%
!! TTGGTCAAAGTAAAATATTT+GGG - chr6_1:30405542-30405561 None:intergenic 20.0%
!! ATTGGTCAAAGTAAAATATT+TGG - chr6_1:30405543-30405562 None:intergenic 20.0%
!! ATAATTTGATCTCTATATGT+TGG + chr6_1:30406041-30406060 Msa0881960:intron 20.0%
! GAAAGAAAGTGAAATGAAAA+AGG - chr6_1:30400237-30400256 None:intergenic 25.0%
! TAGAATTTAGTTGGACAAAT+TGG - chr6_1:30400787-30400806 None:intergenic 25.0%
! AATTAAATGTTTATCCCTTG+TGG - chr6_1:30400871-30400890 None:intergenic 25.0%
!! TTGCAATCTTAACTTTTTGA+AGG + chr6_1:30400957-30400976 Msa0881960:intron 25.0%
! GGAAAAAAAAGACATTTATC+TGG - chr6_1:30401205-30401224 None:intergenic 25.0%
! TTTATAAAATGGAGGACATA+AGG + chr6_1:30401305-30401324 Msa0881960:intron 25.0%
! TTATAAAATGGAGGACATAA+GGG + chr6_1:30401306-30401325 Msa0881960:intron 25.0%
! TTTGTCACCATGTTAAAATA+TGG - chr6_1:30401508-30401527 None:intergenic 25.0%
!!! TACACCAATTTTTAGAGAAA+GGG - chr6_1:30401612-30401631 None:intergenic 25.0%
!!! TTACACCAATTTTTAGAGAA+AGG - chr6_1:30401613-30401632 None:intergenic 25.0%
! TCTAAGAGAAAAATGACATA+TGG + chr6_1:30401722-30401741 Msa0881960:intron 25.0%
!! TTGATAATCTGAAGATTGTT+AGG + chr6_1:30401803-30401822 Msa0881960:intron 25.0%
! TTCCAGTCAAAATTCTAATA+TGG + chr6_1:30401853-30401872 Msa0881960:intron 25.0%
!!! ATCCATATTAGAATTTTGAC+TGG - chr6_1:30401858-30401877 None:intergenic 25.0%
! AGTCAAAATTCTAATATGGA+TGG + chr6_1:30401857-30401876 Msa0881960:intron 25.0%
! CGAAAAGTAACACAAAAATA+TGG - chr6_1:30402240-30402259 None:intergenic 25.0%
!! TTTTCGGCAAATATTAATCA+TGG + chr6_1:30402254-30402273 Msa0881960:intron 25.0%
! AGAATAAGATTCCCATTTAT+TGG - chr6_1:30402316-30402335 None:intergenic 25.0%
!!! AGTGATAACCCTTAATTTTT+TGG + chr6_1:30402338-30402357 Msa0881960:intron 25.0%
! TTTCTCCTCCAAAAAATTAA+GGG - chr6_1:30402349-30402368 None:intergenic 25.0%
! ATTTCTCCTCCAAAAAATTA+AGG - chr6_1:30402350-30402369 None:intergenic 25.0%
! AAGTTTGTGCATGATTATTA+AGG + chr6_1:30402416-30402435 Msa0881960:intron 25.0%
! GCATGATTATTAAGGAAAAA+TGG + chr6_1:30402424-30402443 Msa0881960:intron 25.0%
! CCCTTATTAAATGTAATTAG+TGG + chr6_1:30402495-30402514 Msa0881960:intron 25.0%
! AAAAGTAATAAATGCTGCAT+TGG + chr6_1:30402568-30402587 Msa0881960:intron 25.0%
!!! TTTTTTGAACGAATGAGAAA+AGG + chr6_1:30402680-30402699 Msa0881960:intron 25.0%
!!! TGCTTTGTTCTTCATTTTAT+TGG + chr6_1:30402729-30402748 Msa0881960:intron 25.0%
! AAAATGAAATATGTCATGCT+AGG + chr6_1:30403000-30403019 Msa0881960:intron 25.0%
! GTTTATATACGATGTGAATT+TGG + chr6_1:30403138-30403157 Msa0881960:intron 25.0%
!!! GTTTACATTATTGATTTGCT+AGG - chr6_1:30403179-30403198 None:intergenic 25.0%
! GTAATAATCAAGACCATAAT+CGG - chr6_1:30403527-30403546 None:intergenic 25.0%
! TAATCTAGGTCTGTATATTT+GGG - chr6_1:30403578-30403597 None:intergenic 25.0%
! ATAATCTAGGTCTGTATATT+TGG - chr6_1:30403579-30403598 None:intergenic 25.0%
!!! TACATACATTCCTTTGTTTT+TGG - chr6_1:30403642-30403661 None:intergenic 25.0%
!! ATAGTATAGGAGTATGTATA+TGG + chr6_1:30403694-30403713 Msa0881960:intron 25.0%
!! TAGTATAGGAGTATGTATAT+GGG + chr6_1:30403695-30403714 Msa0881960:intron 25.0%
! GAATAGTCTTCAACATAAAA+CGG + chr6_1:30404114-30404133 Msa0881960:intron 25.0%
! AATAGTCTTCAACATAAAAC+GGG + chr6_1:30404115-30404134 Msa0881960:intron 25.0%
! CAGAAAGTCTCAATAATAAA+TGG - chr6_1:30404656-30404675 None:intergenic 25.0%
!! ACTTTCTATTTGTCTAAAAC+TGG + chr6_1:30404913-30404932 Msa0881960:intron 25.0%
! TAGCAGAATTTAATCCTAAA+GGG + chr6_1:30405320-30405339 Msa0881960:intron 25.0%
! GACAATTTCTTATGTTACAT+TGG - chr6_1:30405362-30405381 None:intergenic 25.0%
!! ACAACAATTTTTACCTGAAT+TGG - chr6_1:30405614-30405633 None:intergenic 25.0%
!!! TCGTGATTATTGTGTTATTT+TGG + chr6_1:30405744-30405763 Msa0881960:intron 25.0%
!!! TTGGTGTTTTTTCTTTCAAT+CGG + chr6_1:30406060-30406079 Msa0881960:intron 25.0%
!! TTTATTTGTGTTACTGACTA+AGG + chr6_1:30406238-30406257 Msa0881960:intron 25.0%
! TAGTGCATTATGTTATAATC+TGG - chr6_1:30406340-30406359 None:intergenic 25.0%
! GATTATAACATAATGCACTA+TGG + chr6_1:30406340-30406359 Msa0881960:CDS 25.0%
! ATGTTGGATAGGTTATATAT+TGG - chr6_1:30406379-30406398 None:intergenic 25.0%
! ATGTTGAGAATTTACTTGAT+AGG + chr6_1:30406461-30406480 Msa0881960:CDS 25.0%
! CAAATTTAATGCTATGTACT+AGG + chr6_1:30406651-30406670 Msa0881960:three_prime_UTR 25.0%
! TCCTTTGGAAGAAATCAAAA+TGG + chr6_1:30400445-30400464 Msa0881960:CDS 30.0%
!!! ACCATTTTGATTTCTTCCAA+AGG - chr6_1:30400449-30400468 None:intergenic 30.0%
ATGTTATTACCTGAAGTTCT+TGG - chr6_1:30400534-30400553 None:intergenic 30.0%
AAACCACATTCATTAGATTG+AGG - chr6_1:30400681-30400700 None:intergenic 30.0%
TCAATCTAATGAATGTGGTT+TGG + chr6_1:30400680-30400699 Msa0881960:intron 30.0%
TTCAACGAGTAGAATTTAGT+TGG - chr6_1:30400796-30400815 None:intergenic 30.0%
TAAGATTTGACTGGATATGT+CGG + chr6_1:30400841-30400860 Msa0881960:intron 30.0%
! ATTAGCATGTGATTTTGCAA+TGG + chr6_1:30400910-30400929 Msa0881960:intron 30.0%
TTGAAGGTTACAACTAAAGA+TGG + chr6_1:30400973-30400992 Msa0881960:intron 30.0%
TGAAGGTTACAACTAAAGAT+GGG + chr6_1:30400974-30400993 Msa0881960:intron 30.0%
GATATTACAACATGGAGTAT+TGG + chr6_1:30401071-30401090 Msa0881960:CDS 30.0%
GAAAAAAGTTACACAAACAG+TGG - chr6_1:30401169-30401188 None:intergenic 30.0%
AAATATGGAGTTTGGTTAAG+TGG - chr6_1:30401493-30401512 None:intergenic 30.0%
CCATGTTAAAATATGGAGTT+TGG - chr6_1:30401501-30401520 None:intergenic 30.0%
!!! CCAAACTCCATATTTTAACA+TGG + chr6_1:30401498-30401517 Msa0881960:intron 30.0%
!! ACACCAATTTTTAGAGAAAG+GGG - chr6_1:30401611-30401630 None:intergenic 30.0%
! GAAAATTGACTCATGAGATT+AGG - chr6_1:30401748-30401767 None:intergenic 30.0%
TCCAGCATTTATCAAATGAT+TGG + chr6_1:30401885-30401904 Msa0881960:intron 30.0%
CCAGCATTTATCAAATGATT+GGG + chr6_1:30401886-30401905 Msa0881960:intron 30.0%
TTGGGAGTTAAATAACAACT+TGG + chr6_1:30401904-30401923 Msa0881960:intron 30.0%
TGGGAGTTAAATAACAACTT+GGG + chr6_1:30401905-30401924 Msa0881960:intron 30.0%
GGTTAAGGATCAAATATAGT+AGG + chr6_1:30401975-30401994 Msa0881960:intron 30.0%
!!! GATAACCCTTAATTTTTTGG+AGG + chr6_1:30402341-30402360 Msa0881960:intron 30.0%
GACTATAATTTAGAGACAGA+GGG - chr6_1:30402391-30402410 None:intergenic 30.0%
! CAAAGCATTAAGAATACCAA+TGG - chr6_1:30402716-30402735 None:intergenic 30.0%
TATAAGGTAACTCGTATGTA+CGG - chr6_1:30403066-30403085 None:intergenic 30.0%
CGTCTATTTAAATCCCAAAA+AGG - chr6_1:30403328-30403347 None:intergenic 30.0%
AGTCTCTTCTAACTTAACTA+AGG - chr6_1:30403405-30403424 None:intergenic 30.0%
! TTATGGTCTTGATTATTACG+TGG + chr6_1:30403528-30403547 Msa0881960:intron 30.0%
!! GTTGTTTCTTCCAAAAACAA+AGG + chr6_1:30403629-30403648 Msa0881960:intron 30.0%
TATCTGAACATAATACAACG+TGG + chr6_1:30403779-30403798 Msa0881960:intron 30.0%
ATCTGAACATAATACAACGT+GGG + chr6_1:30403780-30403799 Msa0881960:intron 30.0%
ATTACCAACTCTTTCTCTTT+AGG - chr6_1:30404239-30404258 None:intergenic 30.0%
TGTTAGAAACAAGGTTAGAT+TGG + chr6_1:30404465-30404484 Msa0881960:intron 30.0%
AACACATAATCAAAAACAGC+AGG - chr6_1:30404737-30404756 None:intergenic 30.0%
ATTATGTGTTTAGCCAAACA+GGG + chr6_1:30404747-30404766 Msa0881960:CDS 30.0%
! AATTAATTTTCTGCCCTGTT+TGG - chr6_1:30404763-30404782 None:intergenic 30.0%
! TCTATTTGTCTAAAACTGGA+AGG + chr6_1:30404917-30404936 Msa0881960:intron 30.0%
! AATCAATTTTCCTTCAGAGA+AGG - chr6_1:30404978-30404997 None:intergenic 30.0%
AGTATTTACCTCACCAATAA+AGG - chr6_1:30405086-30405105 None:intergenic 30.0%
GCACAAAAACATTGTATTGA+AGG - chr6_1:30405216-30405235 None:intergenic 30.0%
AAATAGTGTAGTGATCTGTT+TGG - chr6_1:30405296-30405315 None:intergenic 30.0%
AAACAGATCACTACACTATT+TGG + chr6_1:30405295-30405314 Msa0881960:intron 30.0%
CTAGCAGAATTTAATCCTAA+AGG + chr6_1:30405319-30405338 Msa0881960:intron 30.0%
! ACAATTTTTACCTGAATTGG+TGG - chr6_1:30405611-30405630 None:intergenic 30.0%
! TTCTTTGTTGATGTTGATTG+AGG - chr6_1:30405676-30405695 None:intergenic 30.0%
ATCAACATCAACAAAGAACA+TGG + chr6_1:30405678-30405697 Msa0881960:intron 30.0%
AGAGGTGAAAATCTTACTTT+GGG - chr6_1:30405713-30405732 None:intergenic 30.0%
TAGAGGTGAAAATCTTACTT+TGG - chr6_1:30405714-30405733 None:intergenic 30.0%
ATCACGAGTTAAATAAGTAG+AGG - chr6_1:30405731-30405750 None:intergenic 30.0%
!!! TGCTAACATTTTTTGCATGA+CGG - chr6_1:30405861-30405880 None:intergenic 30.0%
!! AATCGGTTGAATTTTGAGAA+GGG - chr6_1:30406112-30406131 None:intergenic 30.0%
AACATCGAAGAATGTATTGA+TGG + chr6_1:30406141-30406160 Msa0881960:intron 30.0%
TGGATAGGTTATATATTGGT+GGG - chr6_1:30406375-30406394 None:intergenic 30.0%
TTGGATAGGTTATATATTGG+TGG - chr6_1:30406376-30406395 None:intergenic 30.0%
TACTTCTCTTATCAACATCA+TGG - chr6_1:30406495-30406514 None:intergenic 30.0%
! TTCATAGAACTTGATAGTCT+AGG - chr6_1:30406630-30406649 None:intergenic 30.0%
ATACAAATGCCAAGAACTTC+AGG + chr6_1:30400522-30400541 Msa0881960:CDS 35.0%
TCCTACGAATACCTCTAATT+CGG + chr6_1:30400563-30400582 Msa0881960:intron 35.0%
! TCATGGAGTCTAAGATTTGA+CGG - chr6_1:30400590-30400609 None:intergenic 35.0%
TGAGATTTGGCTGAACTAAT+TGG - chr6_1:30400734-30400753 None:intergenic 35.0%
CCAAATCTCACTCATTAAGT+GGG + chr6_1:30400744-30400763 Msa0881960:intron 35.0%
TTCAACGACTAAGATTTGAC+TGG + chr6_1:30400832-30400851 Msa0881960:intron 35.0%
ACTCCATGTTGTAATATCAC+CGG - chr6_1:30401069-30401088 None:intergenic 35.0%
!! ATTACAACATGGAGTATTGG+TGG + chr6_1:30401074-30401093 Msa0881960:CDS 35.0%
! TTTTCCTTCTCTTTTTCCTG+TGG + chr6_1:30401219-30401238 Msa0881960:intron 35.0%
ATGCACTATCATTACTTGTG+AGG + chr6_1:30401446-30401465 Msa0881960:intron 35.0%
TAACATGGTGACAAAAAGTG+CGG + chr6_1:30401513-30401532 Msa0881960:intron 35.0%
CCCAATCATTTGATAAATGC+TGG - chr6_1:30401889-30401908 None:intergenic 35.0%
AACAACTTGGGCTAATCATT+TGG + chr6_1:30401917-30401936 Msa0881960:intron 35.0%
TTGGGCTAATCATTTGGTTA+AGG + chr6_1:30401923-30401942 Msa0881960:intron 35.0%
!!! GCGTGATAGTACTGTTTTTT+TGG - chr6_1:30402188-30402207 None:intergenic 35.0%
CGACTATAATTTAGAGACAG+AGG - chr6_1:30402392-30402411 None:intergenic 35.0%
! AAAAGGACTGATTTCTCCAT+TGG + chr6_1:30402697-30402716 Msa0881960:intron 35.0%
TTGCTAGGTTTAAGTGTTAG+TGG - chr6_1:30403164-30403183 None:intergenic 35.0%
! ACTAATCCTTCAAGCCTTTT+TGG + chr6_1:30403311-30403330 Msa0881960:intron 35.0%
! CTAATCCTTCAAGCCTTTTT+GGG + chr6_1:30403312-30403331 Msa0881960:intron 35.0%
TAAATCCCAAAAAGGCTTGA+AGG - chr6_1:30403320-30403339 None:intergenic 35.0%
! GGTGATTTCAAGTACAAGTT+GGG - chr6_1:30403506-30403525 None:intergenic 35.0%
! GTACTTGAAATCACCGATTA+TGG + chr6_1:30403511-30403530 Msa0881960:intron 35.0%
!! ATTAAAGGCAAGTCTTGTTC+TGG - chr6_1:30403838-30403857 None:intergenic 35.0%
CCATGATCTGCTAGAATTAA+AGG - chr6_1:30403853-30403872 None:intergenic 35.0%
CCTTTAATTCTAGCAGATCA+TGG + chr6_1:30403850-30403869 Msa0881960:CDS 35.0%
! ATAAACATACTGGGTTAGAG+GGG - chr6_1:30403939-30403958 None:intergenic 35.0%
! CATAAACATACTGGGTTAGA+GGG - chr6_1:30403940-30403959 None:intergenic 35.0%
! ACATAAACATACTGGGTTAG+AGG - chr6_1:30403941-30403960 None:intergenic 35.0%
GACTTTCTGTGTAAATATGC+AGG + chr6_1:30404667-30404686 Msa0881960:intron 35.0%
AAAAACAGCAGGTAGATCAT+AGG - chr6_1:30404726-30404745 None:intergenic 35.0%
GATTATGTGTTTAGCCAAAC+AGG + chr6_1:30404746-30404765 Msa0881960:CDS 35.0%
GGGCAGAAAATTAATTACGT+TGG + chr6_1:30404767-30404786 Msa0881960:CDS 35.0%
TGTGGCTTAGATAAGCAATA+GGG - chr6_1:30405030-30405049 None:intergenic 35.0%
ATGTGGCTTAGATAAGCAAT+AGG - chr6_1:30405031-30405050 None:intergenic 35.0%
TACCTCACCAATAAAGGATT+TGG - chr6_1:30405080-30405099 None:intergenic 35.0%
ATAGTACACCAAGTGAAACA+CGG + chr6_1:30405144-30405163 Msa0881960:intron 35.0%
! TTTGAGTTTCCGACACATAT+TGG - chr6_1:30405189-30405208 None:intergenic 35.0%
CTTCTATGTTCTTACCCTTT+AGG - chr6_1:30405337-30405356 None:intergenic 35.0%
!! TGAATTTTGAGAAGGGAGTT+GGG - chr6_1:30406105-30406124 None:intergenic 35.0%
!! TTGAATTTTGAGAAGGGAGT+TGG - chr6_1:30406106-30406125 None:intergenic 35.0%
!! CAATCGGTTGAATTTTGAGA+AGG - chr6_1:30406113-30406132 None:intergenic 35.0%
CTTCTCAAAATTCAACCGAT+TGG + chr6_1:30406111-30406130 Msa0881960:intron 35.0%
TCAAAATTCAACCGATTGGA+AGG + chr6_1:30406115-30406134 Msa0881960:intron 35.0%
! TCGATGTTTTTCCTTCCAAT+CGG - chr6_1:30406129-30406148 None:intergenic 35.0%
TATCATGTGGAATGTTGGAT+AGG - chr6_1:30406390-30406409 None:intergenic 35.0%
AGGTATATCATGTGGAATGT+TGG - chr6_1:30406395-30406414 None:intergenic 35.0%
! ATGAAGAGAGGTATATCATG+TGG - chr6_1:30406403-30406422 None:intergenic 35.0%
ATACCTCTCTTCATTAGCTA+TGG + chr6_1:30406409-30406428 Msa0881960:CDS 35.0%
! TGCTCATGCTGATTACATTA+TGG + chr6_1:30406534-30406553 Msa0881960:CDS 35.0%
! GCTCATGCTGATTACATTAT+GGG + chr6_1:30406535-30406554 Msa0881960:CDS 35.0%
! CTCATGCTGATTACATTATG+GGG + chr6_1:30406536-30406555 Msa0881960:CDS 35.0%
ACACGACTTGAAGCTTGATA+AGG - chr6_1:30400424-30400443 None:intergenic 40.0%
ATATGCCTTCATCCAAAGGA+GGG - chr6_1:30400477-30400496 None:intergenic 40.0%
! CATGGAGTCTAAGATTTGAC+GGG - chr6_1:30400589-30400608 None:intergenic 40.0%
CGACCTCAATCTAATGAATG+TGG + chr6_1:30400675-30400694 Msa0881960:intron 40.0%
TGAACTAATTGGATACGCAG+AGG - chr6_1:30400723-30400742 None:intergenic 40.0%
GCCAAATCTCACTCATTAAG+TGG + chr6_1:30400743-30400762 Msa0881960:intron 40.0%
CCCACTTAATGAGTGAGATT+TGG - chr6_1:30400747-30400766 None:intergenic 40.0%
ATTCCAGAAGGTAGAGTTGA+AGG + chr6_1:30401018-30401037 Msa0881960:CDS 40.0%
GGTAGAGTTGAAGGTAGAAA+TGG + chr6_1:30401027-30401046 Msa0881960:CDS 40.0%
AGAGTTGAAGGTAGAAATGG+TGG + chr6_1:30401030-30401049 Msa0881960:CDS 40.0%
GAGTTGAAGGTAGAAATGGT+GGG + chr6_1:30401031-30401050 Msa0881960:CDS 40.0%
CAACCGGTGATATTACAACA+TGG + chr6_1:30401063-30401082 Msa0881960:CDS 40.0%
!! ATGGAGTATTGGTGGTAAGT+TGG + chr6_1:30401082-30401101 Msa0881960:intron 40.0%
CTAATGCTAAAAGCTACCAC+AGG - chr6_1:30401238-30401257 None:intergenic 40.0%
! CGTCCCCTTTCTCTAAAAAT+TGG + chr6_1:30401605-30401624 Msa0881960:intron 40.0%
TGTCATGCTAGGAAATTCAG+AGG + chr6_1:30403011-30403030 Msa0881960:intron 40.0%
CAGGAGCAACAACATGTTAA+TGG + chr6_1:30403039-30403058 Msa0881960:intron 40.0%
! CGGTGATTTCAAGTACAAGT+TGG - chr6_1:30403507-30403526 None:intergenic 40.0%
GATTATTACGTGGTCAAGCA+TGG + chr6_1:30403538-30403557 Msa0881960:intron 40.0%
ACAAAACTTGCCTACTCTTG+TGG - chr6_1:30403611-30403630 None:intergenic 40.0%
!! CAGATCATGGCTTTGATGTT+TGG + chr6_1:30403863-30403882 Msa0881960:CDS 40.0%
GTTTGGATTGCTAACACAAG+AGG + chr6_1:30403880-30403899 Msa0881960:CDS 40.0%
AGGTCCTAAAGAGAAAGAGT+TGG + chr6_1:30404232-30404251 Msa0881960:intron 40.0%
! GTGTAAATATGCAGGCCTTT+TGG + chr6_1:30404675-30404694 Msa0881960:intron 40.0%
!!! ATATGCAGGCCTTTTGGAAT+TGG + chr6_1:30404681-30404700 Msa0881960:intron 40.0%
TAAAACTGGAAGGCTGTGTT+TGG + chr6_1:30404927-30404946 Msa0881960:intron 40.0%
!! ATAAAGCTGCTGATTTCAGC+TGG - chr6_1:30405003-30405022 None:intergenic 40.0%
GTTGCAGCCAAATCCTTTAT+TGG + chr6_1:30405070-30405089 Msa0881960:CDS 40.0%
AGCCAAATCCTTTATTGGTG+AGG + chr6_1:30405075-30405094 Msa0881960:intron 40.0%
AACAATGTCCGTGTTTCACT+TGG - chr6_1:30405155-30405174 None:intergenic 40.0%
TCTCAGACACCAATATGTGT+CGG + chr6_1:30405177-30405196 Msa0881960:intron 40.0%
AAGTCGTAGCAGTCAATTCT+AGG - chr6_1:30405489-30405508 None:intergenic 40.0%
! GACTTGATGACTGCATTAAC+TGG + chr6_1:30405504-30405523 Msa0881960:intron 40.0%
TACGTAAATGCCACCAATTC+AGG + chr6_1:30405598-30405617 Msa0881960:intron 40.0%
AACAAAGAACATGGTGCACT+TGG + chr6_1:30405687-30405706 Msa0881960:intron 40.0%
!! GAATTTTGAGAAGGGAGTTG+GGG - chr6_1:30406104-30406123 None:intergenic 40.0%
AACTATGCAGTTGTTAGACG+TGG + chr6_1:30406286-30406305 Msa0881960:intron 40.0%
ACTATGCAGTTGTTAGACGT+GGG + chr6_1:30406287-30406306 Msa0881960:intron 40.0%
GCTATGTACTAGGTTGTCAT+TGG + chr6_1:30406661-30406680 Msa0881960:three_prime_UTR 40.0%
AGCTCATAGAGAGACCAACA+TGG + chr6_1:30400336-30400355 Msa0881960:exon 45.0%
GAGACCAACATGGTTTCTCT+AGG + chr6_1:30400346-30400365 Msa0881960:exon 45.0%
GAAGCCTAGAGAAACCATGT+TGG - chr6_1:30400353-30400372 None:intergenic 45.0%
! AAATGGTGTTAGCCCTCCTT+TGG + chr6_1:30400462-30400481 Msa0881960:CDS 45.0%
CATATGCCTTCATCCAAAGG+AGG - chr6_1:30400478-30400497 None:intergenic 45.0%
GCACATATGCCTTCATCCAA+AGG - chr6_1:30400481-30400500 None:intergenic 45.0%
GCTTCTGCTGTCATTGTTCA+TGG + chr6_1:30400499-30400518 Msa0881960:CDS 45.0%
!! GCCGAATTAGAGGTATTCGT+AGG - chr6_1:30400567-30400586 None:intergenic 45.0%
! TGAATGTGGTTTGGCTGAAC+AGG + chr6_1:30400689-30400708 Msa0881960:intron 45.0%
GATATGTCGGACAACCACAA+GGG + chr6_1:30400854-30400873 Msa0881960:intron 45.0%
! GGTACATTTTGAGCCTGCAA+AGG + chr6_1:30400995-30401014 Msa0881960:CDS 45.0%
!! TACCTTCTGGAATCCTTTGC+AGG - chr6_1:30401011-30401030 None:intergenic 45.0%
CTACCTTCAACTCTACCTTC+TGG - chr6_1:30401024-30401043 None:intergenic 45.0%
! AAGGTAGAAATGGTGGGACT+AGG + chr6_1:30401037-30401056 Msa0881960:CDS 45.0%
GCTACCACAGGAAAAAGAGA+AGG - chr6_1:30401226-30401245 None:intergenic 45.0%
ATTCCGCGTCTGTTACATTG+TGG + chr6_1:30401537-30401556 Msa0881960:intron 45.0%
AAAATGTTAACCAGTGCCCC+CGG + chr6_1:30401946-30401965 Msa0881960:intron 45.0%
TCTTGTTAACCAGTGTTCCG+GGG - chr6_1:30402094-30402113 None:intergenic 45.0%
! GTCTTGTTAACCAGTGTTCC+GGG - chr6_1:30402095-30402114 None:intergenic 45.0%
!! GGTCTTGTTAACCAGTGTTC+CGG - chr6_1:30402096-30402115 None:intergenic 45.0%
! GACAGAGGGAGTATGAGAAA+AGG - chr6_1:30402377-30402396 None:intergenic 45.0%
AACGCCTTATCCCACTAAGT+GGG + chr6_1:30402970-30402989 Msa0881960:intron 45.0%
!! AGGAAATTCAGAGGAGTGTC+AGG + chr6_1:30403020-30403039 Msa0881960:intron 45.0%
ACATAATACAACGTGGGTGC+AGG + chr6_1:30403786-30403805 Msa0881960:intron 45.0%
!! AAGGCAAGTCTTGTTCTGGA+GGG - chr6_1:30403834-30403853 None:intergenic 45.0%
!! AAAGGCAAGTCTTGTTCTGG+AGG - chr6_1:30403835-30403854 None:intergenic 45.0%
!!! AGGCCTTTTGGAATTGGTCT+TGG + chr6_1:30404687-30404706 Msa0881960:intron 45.0%
!!! GGCCTTTTGGAATTGGTCTT+GGG + chr6_1:30404688-30404707 Msa0881960:intron 45.0%
GTCCCAAGACCAATTCCAAA+AGG - chr6_1:30404693-30404712 None:intergenic 45.0%
TAATTACGTTGGCCACTCTC+TGG + chr6_1:30404778-30404797 Msa0881960:CDS 45.0%
! AGTAATGGAGTACCAGAGAG+TGG - chr6_1:30404793-30404812 None:intergenic 45.0%
! GCTTTAGCTTCCTTCTCTGA+AGG + chr6_1:30404965-30404984 Msa0881960:CDS 45.0%
!! GACTTGAGAAAGGCATCAAC+AGG - chr6_1:30405453-30405472 None:intergenic 45.0%
AGCACAGAGAGACTTGAGAA+AGG - chr6_1:30405463-30405482 None:intergenic 45.0%
CTATGCAGTTGTTAGACGTG+GGG + chr6_1:30406288-30406307 Msa0881960:intron 45.0%
CCTCCATAGCTAATGAAGAG+AGG - chr6_1:30406415-30406434 None:intergenic 45.0%
CCTCTCTTCATTAGCTATGG+AGG + chr6_1:30406412-30406431 Msa0881960:CDS 45.0%
!! AAATATATAAGTTTATAAAA+TGG + chr6_1:30401294-30401313 Msa0881960:intron 5.0%
!! TATATATAAAATATTAATTG+GGG - chr6_1:30405401-30405420 None:intergenic 5.0%
!! ATTATAATTGAAATATTTAA+AGG - chr6_1:30406026-30406045 None:intergenic 5.0%
GCTTCAAGTCGTGTCTCCTT+TGG + chr6_1:30400430-30400449 Msa0881960:CDS 50.0%
GTTAGCCCTCCTTTGGATGA+AGG + chr6_1:30400469-30400488 Msa0881960:CDS 50.0%
! GATTTGACGGGCCGAATTAG+AGG - chr6_1:30400577-30400596 None:intergenic 50.0%
! TGTGGTTTGGCTGAACAGGT+TGG + chr6_1:30400693-30400712 Msa0881960:intron 50.0%
GACAAATTGGACGACTGCAG+TGG - chr6_1:30400774-30400793 None:intergenic 50.0%
GGATATGTCGGACAACCACA+AGG + chr6_1:30400853-30400872 Msa0881960:intron 50.0%
AGCCTGCAAAGGATTCCAGA+AGG + chr6_1:30401006-30401025 Msa0881960:CDS 50.0%
TGGTGGGACTAGGAAACAAC+CGG + chr6_1:30401047-30401066 Msa0881960:CDS 50.0%
ACGCCACAATGTAACAGACG+CGG - chr6_1:30401543-30401562 None:intergenic 50.0%
AAATGTTAACCAGTGCCCCC+GGG + chr6_1:30401947-30401966 Msa0881960:intron 50.0%
TTGATCCTTAACCTGTGCCC+CGG - chr6_1:30401968-30401987 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG + chr6_1:30402969-30402988 Msa0881960:intron 50.0%
ACGCCTTATCCCACTAAGTG+GGG + chr6_1:30402971-30402990 Msa0881960:intron 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr6_1:30402975-30402994 Msa0881960:intron 50.0%
! TTTTGCCGACCCCACTTAGT+GGG - chr6_1:30402983-30403002 None:intergenic 50.0%
! TTTTTGCCGACCCCACTTAG+TGG - chr6_1:30402984-30403003 None:intergenic 50.0%
ACTTGCCTACTCTTGTGGCA+GGG - chr6_1:30403606-30403625 None:intergenic 50.0%
AACTTGCCTACTCTTGTGGC+AGG - chr6_1:30403607-30403626 None:intergenic 50.0%
AATACAACGTGGGTGCAGGA+TGG + chr6_1:30403790-30403809 Msa0881960:intron 50.0%
TAGTCGCCGACATGTCTCAT+TGG + chr6_1:30403912-30403931 Msa0881960:CDS 50.0%
AGGGGTCCAATGAGACATGT+CGG - chr6_1:30403921-30403940 None:intergenic 50.0%
AGCCACATGAACACTGCACT+TGG + chr6_1:30405043-30405062 Msa0881960:CDS 50.0%
CACCAAGTGCAGTGTTCATG+TGG - chr6_1:30405048-30405067 None:intergenic 50.0%
AATGTTAACCAGTGCCCCCG+GGG + chr6_1:30401948-30401967 Msa0881960:intron 55.0%
TGATCCTTAACCTGTGCCCC+GGG - chr6_1:30401967-30401986 None:intergenic 55.0%
GACTTCCTTAACCAGTGCCC+CGG + chr6_1:30402074-30402093 Msa0881960:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr6_1:30402977-30402996 None:intergenic 55.0%
GTGGCAGGGCTGCATAATCT+AGG - chr6_1:30403592-30403611 None:intergenic 55.0%
ACTGGAAGGCTGTGTTTGGC+AGG + chr6_1:30404931-30404950 Msa0881960:intron 55.0%
CTGGAAGGCTGTGTTTGGCA+GGG + chr6_1:30404932-30404951 Msa0881960:intron 55.0%
AGAAGGGAGTTGGGGCACAT+TGG - chr6_1:30406096-30406115 None:intergenic 55.0%
ATCCTTAACCTGTGCCCCGG+GGG - chr6_1:30401965-30401984 None:intergenic 60.0%
GATCCTTAACCTGTGCCCCG+GGG - chr6_1:30401966-30401985 None:intergenic 60.0%
!! GTGTTCCGGGGCACTGGTTA+AGG - chr6_1:30402082-30402101 None:intergenic 60.0%
TAACCAGTGCCCCGGAACAC+TGG + chr6_1:30402082-30402101 Msa0881960:intron 60.0%
TAACCAGTGTTCCGGGGCAC+TGG - chr6_1:30402088-30402107 None:intergenic 60.0%
TGCAGCCCTGCCACAAGAGT+AGG + chr6_1:30403598-30403617 Msa0881960:intron 60.0%
GGGTGCAGGATGGCATGACA+TGG + chr6_1:30403800-30403819 Msa0881960:intron 60.0%
GGGAGTTGGGGCACATTGGT+CGG - chr6_1:30406092-30406111 None:intergenic 60.0%
TGCCCCCGGGGCACAGGTTA+AGG + chr6_1:30401960-30401979 Msa0881960:intron 70.0%
AACCAGTGCCCCCGGGGCAC+AGG + chr6_1:30401954-30401973 Msa0881960:intron 75.0%
! AACCTGTGCCCCGGGGGCAC+TGG - chr6_1:30401959-30401978 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 30400223 30406735 30400223 ID=Msa0881960;Name=Msa0881960
chr6_1 mRNA 30400223 30406735 30400223 ID=Msa0881960-mRNA-1;Parent=Msa0881960;Name=Msa0881960-mRNA-1;_AED=0.18;_eAED=0.18;_QI=132|0.8|0.83|1|1|1|6|114|340
chr6_1 exon 30400223 30400543 30400223 ID=Msa0881960-mRNA-1:exon:7578;Parent=Msa0881960-mRNA-1
chr6_1 exon 30400979 30401095 30400979 ID=Msa0881960-mRNA-1:exon:7579;Parent=Msa0881960-mRNA-1
chr6_1 exon 30403808 30403948 30403808 ID=Msa0881960-mRNA-1:exon:7580;Parent=Msa0881960-mRNA-1
chr6_1 exon 30404689 30404799 30404689 ID=Msa0881960-mRNA-1:exon:7581;Parent=Msa0881960-mRNA-1
chr6_1 exon 30404953 30405091 30404953 ID=Msa0881960-mRNA-1:exon:7582;Parent=Msa0881960-mRNA-1
chr6_1 exon 30406296 30406735 30406296 ID=Msa0881960-mRNA-1:exon:7583;Parent=Msa0881960-mRNA-1
chr6_1 five_prime_UTR 30400223 30400354 30400223 ID=Msa0881960-mRNA-1:five_prime_utr;Parent=Msa0881960-mRNA-1
chr6_1 CDS 30400355 30400543 30400355 ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1
chr6_1 CDS 30400979 30401095 30400979 ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1
chr6_1 CDS 30403808 30403948 30403808 ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1
chr6_1 CDS 30404689 30404799 30404689 ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1
chr6_1 CDS 30404953 30405091 30404953 ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1
chr6_1 CDS 30406296 30406621 30406296 ID=Msa0881960-mRNA-1:cds;Parent=Msa0881960-mRNA-1
chr6_1 three_prime_UTR 30406622 30406735 30406622 ID=Msa0881960-mRNA-1:three_prime_utr;Parent=Msa0881960-mRNA-1
Gene Sequence

>Msa0881960

ATGGTTTCTCTAGGCTTCATGCAGTTCTCTGTTTTGTCACTCTGTTTCTTACTTTTCACAACTTTTCCTTATCAAGCTTCAAGTCGTGTCTCCTTTGGAAGAAATCAAAATGGTGTTAGCCCTCCTTTGGATGAAGGCATATGTGCTTCTGCTGTCATTGTTCATGGATACAAATGCCAAGAACTTCAGGTTACAACTAAAGATGGGTACATTTTGAGCCTGCAAAGGATTCCAGAAGGTAGAGTTGAAGGTAGAAATGGTGGGACTAGGAAACAACCGGTGATATTACAACATGGAGTATTGGTGGATGGCATGACATGGCTTATGAACCCTCCAGAACAAGACTTGCCTTTAATTCTAGCAGATCATGGCTTTGATGTTTGGATTGCTAACACAAGAGGAACTAGACATAGTCGCCGACATGTCTCATTGGACCCCTCTAACCCAGCCTTTTGGAATTGGTCTTGGGACGAACTTGTTACCTATGATCTACCTGCTGTTTTTGATTATGTGTTTAGCCAAACAGGGCAGAAAATTAATTACGTTGGCCACTCTCTGGGTACTTTGATAGCTTTAGCTTCCTTCTCTGAAGGAAAATTGATTAACCAGCTGAAATCAGCAGCTTTATTGAGCCCTATTGCTTATCTAAGCCACATGAACACTGCACTTGGTGTTGTTGCAGCCAAATCCTTTATTGTTGTTAGACGTGGGGTTCTATCAAAATTCAATTATGTAAGACCAGATTATAACATAATGCACTATGGAGAAATATTCCCACCAATATATAACCTATCCAACATTCCACATGATATACCTCTCTTCATTAGCTATGGAGGACAAGATGCACTTTCTGATGTTCGTGATGTTGAGAATTTACTTGATAGGCTTAAGTTCCATGATGTTGATAAGAGAAGTATTCAATTTGTGAAAGACTATGCTCATGCTGATTACATTATGGGGTTCAATGCAAAAGACATAGTGTATAATTCTGTTCTTTCATTTTTCAATCAAGTCAATACTTGA

Protein sequence

>Msa0881960

MVSLGFMQFSVLSLCFLLFTTFPYQASSRVSFGRNQNGVSPPLDEGICASAVIVHGYKCQELQVTTKDGYILSLQRIPEGRVEGRNGGTRKQPVILQHGVLVDGMTWLMNPPEQDLPLILADHGFDVWIANTRGTRHSRRHVSLDPSNPAFWNWSWDELVTYDLPAVFDYVFSQTGQKINYVGHSLGTLIALASFSEGKLINQLKSAALLSPIAYLSHMNTALGVVAAKSFIVVRRGVLSKFNYVRPDYNIMHYGEIFPPIYNLSNIPHDIPLFISYGGQDALSDVRDVENLLDRLKFHDVDKRSIQFVKDYAHADYIMGFNAKDIVYNSVLSFFNQVNT*