Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979180 | XP_003618787.1 | 99.752 | 404 | 1 | 0 | 1 | 404 | 1 | 404 | 0.0 | 838 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979180 | sp|Q93Z25|PLY22_ARATH | 73.267 | 404 | 105 | 2 | 4 | 404 | 29 | 432 | 0.0 | 617 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979180 | G7KN73 | 99.752 | 404 | 1 | 0 | 1 | 404 | 1 | 404 | 0.0 | 838 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0000050 | Msa0979180 | 0.801041 | 1.085414e-48 | -8.615850e-47 |
| Msa0005890 | Msa0979180 | 0.805112 | 1.562314e-49 | -8.615850e-47 |
| Msa0017930 | Msa0979180 | 0.813350 | 2.676470e-51 | -8.615850e-47 |
| Msa0019900 | Msa0979180 | 0.804986 | 1.660282e-49 | -8.615850e-47 |
| Msa0025720 | Msa0979180 | 0.803622 | 3.192085e-49 | -8.615850e-47 |
| Msa0027820 | Msa0979180 | 0.813502 | 2.477415e-51 | -8.615850e-47 |
| Msa0030160 | Msa0979180 | 0.801518 | 8.671044e-49 | -8.615850e-47 |
| Msa0036890 | Msa0979180 | 0.803669 | 3.121484e-49 | -8.615850e-47 |
| Msa0048510 | Msa0979180 | 0.801712 | 7.911398e-49 | -8.615850e-47 |
| Msa0053860 | Msa0979180 | 0.807205 | 5.662802e-50 | -8.615850e-47 |
| Msa0075450 | Msa0979180 | 0.824149 | 9.440252e-54 | -8.615850e-47 |
| Msa0084970 | Msa0979180 | 0.801995 | 6.919993e-49 | -8.615850e-47 |
| Msa0089980 | Msa0979180 | 0.811093 | 8.318135e-51 | -8.615850e-47 |
| Msa0090010 | Msa0979180 | 0.809778 | 1.599579e-50 | -8.615850e-47 |
| Msa0094780 | Msa0979180 | 0.814073 | 1.855372e-51 | -8.615850e-47 |
| Msa0098040 | Msa0979180 | 0.806493 | 8.007559e-50 | -8.615850e-47 |
| Msa0108410 | Msa0979180 | 0.834134 | 3.572255e-56 | -8.615850e-47 |
| Msa0605560 | Msa0979180 | 0.801732 | 7.837047e-49 | -8.615850e-47 |
| Msa0611210 | Msa0979180 | 0.808310 | 3.298706e-50 | -8.615850e-47 |
| Msa0615290 | Msa0979180 | 0.811627 | 6.368934e-51 | -8.615850e-47 |
| Msa0619050 | Msa0979180 | 0.806936 | 6.455233e-50 | -8.615850e-47 |
| Msa0624420 | Msa0979180 | 0.805331 | 1.405530e-49 | -8.615850e-47 |
| Msa0624900 | Msa0979180 | 0.813363 | 2.658718e-51 | -8.615850e-47 |
| Msa0626270 | Msa0979180 | 0.811020 | 8.624240e-51 | -8.615850e-47 |
| Msa0626450 | Msa0979180 | 0.830418 | 2.969479e-55 | -8.615850e-47 |
| Msa0626460 | Msa0979180 | 0.809331 | 1.994523e-50 | -8.615850e-47 |
| Msa0626490 | Msa0979180 | 0.826983 | 2.010426e-54 | -8.615850e-47 |
| Msa0644410 | Msa0979180 | 0.821559 | 3.786363e-53 | -8.615850e-47 |
| Msa0658640 | Msa0979180 | 0.809982 | 1.445642e-50 | -8.615850e-47 |
| Msa0659120 | Msa0979180 | 0.816398 | 5.644940e-52 | -8.615850e-47 |
| Msa0663270 | Msa0979180 | 0.813554 | 2.413314e-51 | -8.615850e-47 |
| Msa0664090 | Msa0979180 | 0.842038 | 3.300463e-58 | -8.615850e-47 |
| Msa0664150 | Msa0979180 | 0.811679 | 6.206381e-51 | -8.615850e-47 |
| Msa0664540 | Msa0979180 | 0.822302 | 2.546843e-53 | -8.615850e-47 |
| Msa0664600 | Msa0979180 | 0.833513 | 5.107203e-56 | -8.615850e-47 |
| Msa0693330 | Msa0979180 | 0.811433 | 7.019863e-51 | -8.615850e-47 |
| Msa0702720 | Msa0979180 | 0.849206 | 3.753145e-60 | -8.615850e-47 |
| Msa0705580 | Msa0979180 | 0.801540 | 8.582674e-49 | -8.615850e-47 |
| Msa0721080 | Msa0979180 | 0.812982 | 3.223272e-51 | -8.615850e-47 |
| Msa0723090 | Msa0979180 | 0.805416 | 1.348906e-49 | -8.615850e-47 |
| Msa0725770 | Msa0979180 | 0.807504 | 4.895390e-50 | -8.615850e-47 |
| Msa0735780 | Msa0979180 | 0.809409 | 1.919671e-50 | -8.615850e-47 |
| Msa0741220 | Msa0979180 | 0.811532 | 6.678277e-51 | -8.615850e-47 |
| Msa0748670 | Msa0979180 | 0.801658 | 8.117215e-49 | -8.615850e-47 |
| Msa0768990 | Msa0979180 | 0.807464 | 4.989881e-50 | -8.615850e-47 |
| Msa0795870 | Msa0979180 | 0.826344 | 2.855601e-54 | -8.615850e-47 |
| Msa0833530 | Msa0979180 | 0.817348 | 3.455803e-52 | -8.615850e-47 |
| Msa0833650 | Msa0979180 | 0.821181 | 4.627920e-53 | -8.615850e-47 |
| Msa0133280 | Msa0979180 | 0.800053 | 1.726311e-48 | -8.615850e-47 |
| Msa0158860 | Msa0979180 | 0.806840 | 6.764496e-50 | -8.615850e-47 |
| Msa0174450 | Msa0979180 | 0.841051 | 6.006570e-58 | -8.615850e-47 |
| Msa0182190 | Msa0979180 | 0.810417 | 1.164706e-50 | -8.615850e-47 |
| Msa0182240 | Msa0979180 | 0.802575 | 5.258037e-49 | -8.615850e-47 |
| Msa0208030 | Msa0979180 | 0.824078 | 9.807909e-54 | -8.615850e-47 |
| Msa0208140 | Msa0979180 | 0.819611 | 1.060289e-52 | -8.615850e-47 |
| Msa0225100 | Msa0979180 | 0.832639 | 8.425939e-56 | -8.615850e-47 |
| Msa0225860 | Msa0979180 | 0.829380 | 5.318561e-55 | -8.615850e-47 |
| Msa0226310 | Msa0979180 | 0.833606 | 4.841031e-56 | -8.615850e-47 |
| Msa0235290 | Msa0979180 | 0.808338 | 3.253546e-50 | -8.615850e-47 |
| Msa0367870 | Msa0979180 | 0.817325 | 3.495695e-52 | -8.615850e-47 |
| Msa0369790 | Msa0979180 | 0.827130 | 1.854649e-54 | -8.615850e-47 |
| Msa0375640 | Msa0979180 | 0.809537 | 1.801592e-50 | -8.615850e-47 |
| Msa0378720 | Msa0979180 | 0.821248 | 4.467563e-53 | -8.615850e-47 |
| Msa0403640 | Msa0979180 | 0.827824 | 1.263732e-54 | -8.615850e-47 |
| Msa0424140 | Msa0979180 | 0.802507 | 5.430109e-49 | -8.615850e-47 |
| Msa0424160 | Msa0979180 | 0.820355 | 7.165954e-53 | -8.615850e-47 |
| Msa0428370 | Msa0979180 | 0.816332 | 5.839778e-52 | -8.615850e-47 |
| Msa0464000 | Msa0979180 | 0.823952 | 1.049971e-53 | -8.615850e-47 |
| Msa0474730 | Msa0979180 | 0.821547 | 3.809427e-53 | -8.615850e-47 |
| Msa0476650 | Msa0979180 | 0.811842 | 5.719343e-51 | -8.615850e-47 |
| Msa0240900 | Msa0979180 | 0.807550 | 4.784499e-50 | -8.615850e-47 |
| Msa0247940 | Msa0979180 | 0.800264 | 1.563584e-48 | -8.615850e-47 |
| Msa0251710 | Msa0979180 | 0.836959 | 6.892802e-57 | -8.615850e-47 |
| Msa0260510 | Msa0979180 | 0.805902 | 1.066848e-49 | -8.615850e-47 |
| Msa0266180 | Msa0979180 | 0.829524 | 4.904805e-55 | -8.615850e-47 |
| Msa0267110 | Msa0979180 | 0.811213 | 7.833327e-51 | -8.615850e-47 |
| Msa0267790 | Msa0979180 | 0.816546 | 5.229144e-52 | -8.615850e-47 |
| Msa0287740 | Msa0979180 | 0.824627 | 7.286180e-54 | -8.615850e-47 |
| Msa0290720 | Msa0979180 | 0.814047 | 1.879616e-51 | -8.615850e-47 |
| Msa0300320 | Msa0979180 | 0.806367 | 8.514496e-50 | -8.615850e-47 |
| Msa0304570 | Msa0979180 | 0.849640 | 2.839787e-60 | -8.615850e-47 |
| Msa0304680 | Msa0979180 | 0.851796 | 7.026057e-61 | -8.615850e-47 |
| Msa0307270 | Msa0979180 | 0.818237 | 2.176255e-52 | -8.615850e-47 |
| Msa0315690 | Msa0979180 | 0.801266 | 9.764729e-49 | -8.615850e-47 |
| Msa0317970 | Msa0979180 | 0.813602 | 2.355555e-51 | -8.615850e-47 |
| Msa0321620 | Msa0979180 | 0.802790 | 4.745575e-49 | -8.615850e-47 |
| Msa0330380 | Msa0979180 | 0.811215 | 7.824446e-51 | -8.615850e-47 |
| Msa0330520 | Msa0979180 | 0.807490 | 4.928747e-50 | -8.615850e-47 |
| Msa0340500 | Msa0979180 | 0.816293 | 5.960244e-52 | -8.615850e-47 |
| Msa0361910 | Msa0979180 | 0.803864 | 2.844188e-49 | -8.615850e-47 |
| Msa0483100 | Msa0979180 | 0.820476 | 6.721246e-53 | -8.615850e-47 |
| Msa0485240 | Msa0979180 | 0.823235 | 1.544947e-53 | -8.615850e-47 |
| Msa0509550 | Msa0979180 | 0.825403 | 4.776897e-54 | -8.615850e-47 |
| Msa0515800 | Msa0979180 | 0.815775 | 7.778796e-52 | -8.615850e-47 |
| Msa0519820 | Msa0979180 | 0.802807 | 4.709222e-49 | -8.615850e-47 |
| Msa0526730 | Msa0979180 | 0.805030 | 1.625097e-49 | -8.615850e-47 |
| Msa0527820 | Msa0979180 | 0.829573 | 4.772032e-55 | -8.615850e-47 |
| Msa0528570 | Msa0979180 | 0.842313 | 2.790273e-58 | -8.615850e-47 |
| Msa0548470 | Msa0979180 | 0.821635 | 3.635175e-53 | -8.615850e-47 |
| Msa0557460 | Msa0979180 | 0.829574 | 4.771033e-55 | -8.615850e-47 |
| Msa0565170 | Msa0979180 | 0.807258 | 5.519026e-50 | -8.615850e-47 |
| Msa0568800 | Msa0979180 | 0.811048 | 8.504714e-51 | -8.615850e-47 |
| Msa0580370 | Msa0979180 | 0.824520 | 7.718702e-54 | -8.615850e-47 |
| Msa0581470 | Msa0979180 | 0.802906 | 4.491536e-49 | -8.615850e-47 |
| Msa0582480 | Msa0979180 | 0.838019 | 3.687032e-57 | -8.615850e-47 |
| Msa0583360 | Msa0979180 | -0.846318 | 2.342551e-59 | -8.615850e-47 |
| Msa0586220 | Msa0979180 | 0.834109 | 3.624057e-56 | -8.615850e-47 |
| Msa0871720 | Msa0979180 | 0.809452 | 1.878746e-50 | -8.615850e-47 |
| Msa0871880 | Msa0979180 | 0.813228 | 2.847110e-51 | -8.615850e-47 |
| Msa0876930 | Msa0979180 | 0.899656 | 1.596743e-77 | -8.615850e-47 |
| Msa0876940 | Msa0979180 | 0.910137 | 2.620641e-82 | -8.615850e-47 |
| Msa0878280 | Msa0979180 | 0.821016 | 5.051291e-53 | -8.615850e-47 |
| Msa0881960 | Msa0979180 | 0.800650 | 1.304645e-48 | -8.615850e-47 |
| Msa0899970 | Msa0979180 | 0.812571 | 3.964051e-51 | -8.615850e-47 |
| Msa0905240 | Msa0979180 | 0.801124 | 1.044134e-48 | -8.615850e-47 |
| Msa0910410 | Msa0979180 | 0.812097 | 5.032174e-51 | -8.615850e-47 |
| Msa0937230 | Msa0979180 | 0.808439 | 3.095967e-50 | -8.615850e-47 |
| Msa0942210 | Msa0979180 | 0.849902 | 2.398923e-60 | -8.615850e-47 |
| Msa0942220 | Msa0979180 | 0.840817 | 6.916870e-58 | -8.615850e-47 |
| Msa0965080 | Msa0979180 | 0.817258 | 3.619354e-52 | -8.615850e-47 |
| Msa0965290 | Msa0979180 | 0.820374 | 7.094604e-53 | -8.615850e-47 |
| Msa0967870 | Msa0979180 | 0.818358 | 2.043750e-52 | -8.615850e-47 |
| Msa0974520 | Msa0979180 | 0.809307 | 2.018449e-50 | -8.615850e-47 |
| Msa0979180 | Msa0999680 | 0.820802 | 5.658568e-53 | -8.615850e-47 |
| Msa0979180 | Msa1012710 | 0.804096 | 2.544949e-49 | -8.615850e-47 |
| Msa0979180 | Msa1012800 | 0.838134 | 3.443281e-57 | -8.615850e-47 |
| Msa0979180 | Msa1020480 | 0.809204 | 2.124063e-50 | -8.615850e-47 |
| Msa0979180 | Msa1020510 | 0.808486 | 3.024436e-50 | -8.615850e-47 |
| Msa0979180 | Msa1026480 | 0.814996 | 1.158857e-51 | -8.615850e-47 |
| Msa0979180 | Msa1028280 | 0.825418 | 4.738436e-54 | -8.615850e-47 |
| Msa0979180 | Msa1034500 | 0.809909 | 1.498387e-50 | -8.615850e-47 |
| Msa0979180 | Msa1051900 | 0.805229 | 1.476559e-49 | -8.615850e-47 |
| Msa0979180 | Msa1065880 | 0.822029 | 2.947977e-53 | -8.615850e-47 |
| Msa0979180 | Msa1066670 | 0.809609 | 1.738387e-50 | -8.615850e-47 |
| Msa0979180 | Msa1072940 | 0.803461 | 3.448345e-49 | -8.615850e-47 |
| Msa0979180 | Msa1089450 | 0.806984 | 6.307774e-50 | -8.615850e-47 |
| Msa0979180 | Msa1094410 | 0.809711 | 1.653458e-50 | -8.615850e-47 |
| Msa0979180 | Msa1131050 | 0.836163 | 1.098961e-56 | -8.615850e-47 |
| Msa0979180 | Msa1132840 | 0.825539 | 4.437414e-54 | -8.615850e-47 |
| Msa0979180 | Msa1145580 | 0.804373 | 2.228980e-49 | -8.615850e-47 |
| Msa0979180 | Msa1145810 | 0.827588 | 1.439685e-54 | -8.615850e-47 |
| Msa0979180 | Msa1147740 | 0.806516 | 7.921130e-50 | -8.615850e-47 |
| Msa0979180 | Msa1155170 | -0.835422 | 1.693396e-56 | -8.615850e-47 |
| Msa0979180 | Msa1160920 | 0.823284 | 1.504825e-53 | -8.615850e-47 |
| Msa0979180 | Msa1173280 | 0.802045 | 6.758512e-49 | -8.615850e-47 |
| Msa0979180 | Msa1175180 | 0.825629 | 4.223697e-54 | -8.615850e-47 |
| Msa0979180 | Msa1186020 | 0.814717 | 1.336729e-51 | -8.615850e-47 |
| Msa0979180 | Msa1200890 | 0.803130 | 4.036413e-49 | -8.615850e-47 |
| Msa0979180 | Msa1208950 | 0.812086 | 5.058868e-51 | -8.615850e-47 |
| Msa0979180 | Msa1224930 | 0.801282 | 9.692415e-49 | -8.615850e-47 |
| Msa0979180 | Msa1225860 | -0.844786 | 6.092008e-59 | -8.615850e-47 |
| Msa0979180 | Msa1226520 | 0.803322 | 3.684314e-49 | -8.615850e-47 |
| Msa0979180 | Msa1277150 | 0.845406 | 4.143640e-59 | -8.615850e-47 |
| Msa0979180 | Msa1314190 | 0.801593 | 8.367884e-49 | -8.615850e-47 |
| Msa0979180 | Msa1320670 | 0.819502 | 1.122766e-52 | -8.615850e-47 |
| Msa0979180 | Msa1330420 | 0.806590 | 7.639337e-50 | -8.615850e-47 |
| Msa0979180 | Msa1341840 | 0.863064 | 3.249712e-64 | -8.615850e-47 |
| Msa0979180 | Msa1346560 | 0.815700 | 8.084233e-52 | -8.615850e-47 |
| Msa0979180 | Msa1348090 | 0.809775 | 1.601629e-50 | -8.615850e-47 |
| Msa0979180 | Msa1355450 | 0.807421 | 5.097668e-50 | -8.615850e-47 |
| Msa0979180 | Msa1369690 | 0.802744 | 4.850699e-49 | -8.615850e-47 |
| Msa0979180 | Msa1389900 | 0.808700 | 2.722382e-50 | -8.615850e-47 |
| Msa0979180 | Msa1392580 | 0.829487 | 5.008289e-55 | -8.615850e-47 |
| Msa0979180 | Msa1397400 | 0.806852 | 6.726709e-50 | -8.615850e-47 |
| Msa0979180 | Msa1415540 | 0.832581 | 8.713009e-56 | -8.615850e-47 |
| Msa0979180 | Msa1418240 | 0.823410 | 1.406449e-53 | -8.615850e-47 |
| Msa0979180 | Msa1425090 | 0.837397 | 5.324262e-57 | -8.615850e-47 |
| Msa0979180 | Msa1440960 | 0.826039 | 3.375772e-54 | -8.615850e-47 |
| Msa0979180 | Msa1459100 | 0.831146 | 1.968864e-55 | -8.615850e-47 |
| Msa0979180 | Msa1461370 | 0.851032 | 1.155730e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979180 | MtrunA17_Chr6g0458201 | 99.752 | 404 | 1 | 0 | 1 | 404 | 1 | 404 | 0.0 | 838 |
| Msa0979180 | MtrunA17_Chr4g0058051 | 81.152 | 382 | 71 | 1 | 24 | 404 | 26 | 407 | 0.0 | 639 |
| Msa0979180 | MtrunA17_Chr3g0116521 | 75.931 | 403 | 97 | 0 | 2 | 404 | 4 | 406 | 0.0 | 619 |
| Msa0979180 | MtrunA17_Chr3g0123321 | 75.448 | 391 | 93 | 2 | 14 | 404 | 16 | 403 | 0.0 | 588 |
| Msa0979180 | MtrunA17_Chr1g0169731 | 68.146 | 383 | 122 | 0 | 22 | 404 | 68 | 450 | 0.0 | 566 |
| Msa0979180 | MtrunA17_Chr7g0237761 | 66.062 | 386 | 131 | 0 | 19 | 404 | 59 | 444 | 0.0 | 551 |
| Msa0979180 | MtrunA17_Chr3g0123331 | 66.339 | 407 | 133 | 4 | 1 | 404 | 1 | 406 | 0.0 | 534 |
| Msa0979180 | MtrunA17_Chr1g0210321 | 64.116 | 379 | 133 | 1 | 27 | 402 | 35 | 413 | 0.0 | 515 |
| Msa0979180 | MtrunA17_Chr1g0180381 | 62.500 | 384 | 137 | 1 | 26 | 402 | 34 | 417 | 0.0 | 515 |
| Msa0979180 | MtrunA17_Chr7g0264891 | 60.794 | 403 | 156 | 2 | 1 | 402 | 11 | 412 | 3.76e-178 | 504 |
| Msa0979180 | MtrunA17_Chr4g0060211 | 57.487 | 374 | 154 | 3 | 34 | 404 | 63 | 434 | 2.68e-160 | 457 |
| Msa0979180 | MtrunA17_Chr5g0416061 | 56.250 | 368 | 160 | 1 | 38 | 404 | 82 | 449 | 1.38e-153 | 441 |
| Msa0979180 | MtrunA17_Chr8g0362561 | 53.616 | 401 | 170 | 4 | 20 | 404 | 55 | 455 | 6.51e-152 | 437 |
| Msa0979180 | MtrunA17_Chr4g0075231 | 60.857 | 350 | 133 | 3 | 56 | 404 | 39 | 385 | 2.29e-151 | 433 |
| Msa0979180 | MtrunA17_Chr5g0416041 | 55.928 | 388 | 162 | 3 | 26 | 404 | 62 | 449 | 3.00e-150 | 433 |
| Msa0979180 | MtrunA17_Chr2g0288921 | 52.278 | 417 | 178 | 6 | 1 | 404 | 1 | 409 | 1.42e-146 | 422 |
| Msa0979180 | MtrunA17_Chr6g0452861 | 53.299 | 394 | 171 | 3 | 24 | 404 | 60 | 453 | 1.74e-146 | 423 |
| Msa0979180 | MtrunA17_Chr7g0216581 | 58.192 | 354 | 147 | 1 | 52 | 404 | 98 | 451 | 4.44e-143 | 414 |
| Msa0979180 | MtrunA17_Chr8g0373761 | 45.480 | 354 | 185 | 6 | 56 | 404 | 42 | 392 | 5.21e-99 | 300 |
| Msa0979180 | MtrunA17_Chr3g0089181 | 45.198 | 354 | 186 | 6 | 56 | 404 | 23 | 373 | 1.51e-97 | 296 |
| Msa0979180 | MtrunA17_Chr8g0373721 | 45.198 | 354 | 186 | 6 | 56 | 404 | 42 | 392 | 2.51e-97 | 296 |
| Msa0979180 | MtrunA17_Chr8g0373731 | 45.198 | 354 | 186 | 6 | 56 | 404 | 42 | 392 | 1.17e-91 | 281 |
| Msa0979180 | MtrunA17_Chr8g0373701 | 43.503 | 354 | 192 | 6 | 56 | 404 | 97 | 447 | 1.81e-89 | 277 |
| Msa0979180 | MtrunA17_Chr5g0403391 | 42.373 | 354 | 196 | 6 | 56 | 404 | 41 | 391 | 1.84e-84 | 263 |
| Msa0979180 | MtrunA17_Chr4g0031851 | 45.955 | 309 | 161 | 5 | 95 | 400 | 28 | 333 | 3.67e-84 | 261 |
| Msa0979180 | MtrunA17_Chr5g0414541 | 42.373 | 354 | 196 | 6 | 56 | 404 | 41 | 391 | 4.70e-84 | 261 |
| Msa0979180 | MtrunA17_Chr5g0403481 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 1.09e-83 | 261 |
| Msa0979180 | MtrunA17_Chr5g0403461 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 1.09e-83 | 261 |
| Msa0979180 | MtrunA17_Chr5g0403491 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 1.09e-83 | 261 |
| Msa0979180 | MtrunA17_Chr5g0403411 | 42.090 | 354 | 197 | 6 | 56 | 404 | 41 | 391 | 3.73e-81 | 254 |
| Msa0979180 | MtrunA17_Chr1g0183941 | 43.657 | 268 | 147 | 3 | 131 | 396 | 1 | 266 | 7.15e-69 | 218 |
| Msa0979180 | MtrunA17_Chr3g0113551 | 76.984 | 126 | 29 | 0 | 201 | 326 | 161 | 286 | 4.64e-68 | 218 |
| Msa0979180 | MtrunA17_Chr6g0481851 | 40.433 | 277 | 109 | 6 | 89 | 364 | 6 | 227 | 1.08e-52 | 176 |
| Msa0979180 | MtrunA17_Chr1g0212931 | 38.699 | 292 | 153 | 7 | 69 | 359 | 9 | 275 | 6.81e-50 | 171 |
| Msa0979180 | MtrunA17_Chr2g0288901 | 50.641 | 156 | 72 | 3 | 250 | 404 | 5 | 156 | 3.99e-48 | 161 |
| Msa0979180 | MtrunA17_Chr2g0288911 | 63.115 | 122 | 44 | 1 | 131 | 251 | 1 | 122 | 2.46e-43 | 147 |
| Msa0979180 | MtrunA17_Chr1g0182021 | 36.491 | 285 | 157 | 4 | 75 | 359 | 64 | 324 | 4.22e-40 | 146 |
| Msa0979180 | MtrunA17_Chr1g0183951 | 37.778 | 90 | 53 | 2 | 29 | 117 | 17 | 104 | 1.54e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0979180 | AT5G63180.1 | 73.267 | 404 | 105 | 2 | 4 | 404 | 29 | 432 | 0.0 | 617 |
| Msa0979180 | AT3G27400.2 | 72.705 | 403 | 104 | 2 | 7 | 404 | 15 | 416 | 0.0 | 615 |
| Msa0979180 | AT3G27400.1 | 72.705 | 403 | 104 | 2 | 7 | 404 | 11 | 412 | 0.0 | 615 |
| Msa0979180 | AT1G67750.1 | 74.036 | 389 | 99 | 1 | 16 | 404 | 22 | 408 | 0.0 | 608 |
| Msa0979180 | AT4G24780.2 | 73.116 | 398 | 105 | 2 | 8 | 404 | 12 | 408 | 0.0 | 594 |
| Msa0979180 | AT4G24780.1 | 73.116 | 398 | 105 | 2 | 8 | 404 | 12 | 408 | 0.0 | 594 |
| Msa0979180 | AT4G13710.1 | 66.667 | 393 | 127 | 1 | 16 | 404 | 78 | 470 | 0.0 | 589 |
| Msa0979180 | AT4G13710.2 | 66.667 | 393 | 127 | 1 | 16 | 404 | 59 | 451 | 0.0 | 587 |
| Msa0979180 | AT3G07010.1 | 68.317 | 404 | 121 | 1 | 8 | 404 | 13 | 416 | 0.0 | 573 |
| Msa0979180 | AT3G07010.2 | 71.088 | 377 | 109 | 0 | 28 | 404 | 7 | 383 | 0.0 | 568 |
| Msa0979180 | AT1G04680.1 | 67.617 | 386 | 121 | 1 | 23 | 404 | 44 | 429 | 0.0 | 556 |
| Msa0979180 | AT3G24670.1 | 68.586 | 382 | 120 | 0 | 23 | 404 | 59 | 440 | 0.0 | 551 |
| Msa0979180 | AT3G24230.1 | 65.026 | 386 | 130 | 2 | 23 | 404 | 67 | 451 | 0.0 | 545 |
| Msa0979180 | AT5G48900.1 | 64.663 | 416 | 133 | 2 | 3 | 404 | 2 | 417 | 0.0 | 535 |
| Msa0979180 | AT4G13210.2 | 68.407 | 383 | 120 | 1 | 23 | 404 | 56 | 438 | 0.0 | 527 |
| Msa0979180 | AT4G13210.1 | 68.407 | 383 | 120 | 1 | 23 | 404 | 19 | 401 | 0.0 | 526 |
| Msa0979180 | AT3G53190.1 | 62.222 | 405 | 137 | 3 | 7 | 396 | 11 | 414 | 1.33e-179 | 509 |
| Msa0979180 | AT5G04310.3 | 62.402 | 383 | 131 | 1 | 27 | 396 | 53 | 435 | 2.65e-171 | 488 |
| Msa0979180 | AT5G04310.1 | 62.402 | 383 | 131 | 1 | 27 | 396 | 53 | 435 | 4.41e-170 | 486 |
| Msa0979180 | AT5G04310.2 | 62.402 | 383 | 131 | 1 | 27 | 396 | 53 | 435 | 4.41e-170 | 486 |
| Msa0979180 | AT5G55720.1 | 56.608 | 401 | 159 | 4 | 5 | 404 | 6 | 392 | 1.65e-167 | 475 |
| Msa0979180 | AT3G54920.1 | 59.481 | 385 | 132 | 4 | 27 | 396 | 37 | 412 | 3.36e-167 | 478 |
| Msa0979180 | AT1G14420.1 | 54.211 | 380 | 166 | 2 | 33 | 404 | 80 | 459 | 3.97e-151 | 436 |
| Msa0979180 | AT1G11920.1 | 58.000 | 350 | 144 | 3 | 56 | 404 | 37 | 384 | 6.76e-148 | 425 |
| Msa0979180 | AT4G22090.1 | 57.429 | 350 | 145 | 3 | 56 | 404 | 47 | 393 | 1.28e-145 | 419 |
| Msa0979180 | AT3G01270.1 | 56.056 | 355 | 154 | 2 | 52 | 404 | 121 | 475 | 2.79e-145 | 421 |
| Msa0979180 | AT5G15110.1 | 55.211 | 355 | 157 | 2 | 52 | 404 | 118 | 472 | 3.04e-145 | 421 |
| Msa0979180 | AT4G22080.1 | 57.143 | 350 | 146 | 3 | 56 | 404 | 47 | 393 | 1.27e-143 | 414 |
| Msa0979180 | AT2G02720.1 | 53.521 | 355 | 159 | 1 | 56 | 404 | 101 | 455 | 3.82e-140 | 407 |
| Msa0979180 | AT1G30350.1 | 51.621 | 401 | 161 | 5 | 4 | 404 | 1 | 368 | 5.93e-140 | 404 |
| Msa0979180 | AT5G09280.1 | 47.984 | 248 | 127 | 2 | 89 | 335 | 6 | 252 | 5.41e-78 | 243 |
| Msa0979180 | AT3G55140.1 | 39.510 | 286 | 147 | 7 | 75 | 359 | 16 | 276 | 2.81e-50 | 172 |
| Msa0979180 | AT3G09540.1 | 36.111 | 288 | 158 | 5 | 73 | 359 | 61 | 323 | 1.92e-43 | 155 |
| Msa0979180 | AT3G55140.2 | 39.044 | 251 | 132 | 6 | 110 | 359 | 22 | 252 | 4.22e-42 | 150 |
| Msa0979180 | AT3G09540.3 | 35.764 | 288 | 155 | 6 | 73 | 359 | 61 | 319 | 1.86e-41 | 150 |
| Msa0979180 | AT3G09540.2 | 35.510 | 245 | 134 | 4 | 73 | 317 | 61 | 281 | 6.84e-36 | 133 |
Find 98 sgRNAs with CRISPR-Local
Find 171 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGTTTAATTCACAACATATT+TGG | 0.148343 | 6_4:-15717952 | Msa0979180:CDS |
| CACCAGAACATAGTGGATTT+TGG | 0.165374 | 6_4:-15718003 | Msa0979180:CDS |
| TGTCGGTTGTTCTCCCAATT+TGG | 0.183698 | 6_4:+15718379 | None:intergenic |
| GAAGAGGATGAAACAAAATT+TGG | 0.190078 | 6_4:+15719509 | None:intergenic |
| ATGCATACCTTGGCATTCTT+TGG | 0.240400 | 6_4:+15717735 | None:intergenic |
| ATCTACATTGTCACTGATTC+AGG | 0.262745 | 6_4:-15718295 | Msa0979180:CDS |
| TCAATTAAAACAAGAACTTT+TGG | 0.293810 | 6_4:-15718176 | Msa0979180:CDS |
| TCATGACAAAGTTATGCTTT+TGG | 0.300199 | 6_4:-15717834 | Msa0979180:CDS |
| GCTGATTGTGCAATTGGATT+TGG | 0.305034 | 6_4:-15718349 | Msa0979180:CDS |
| GTCGGTTGTTCTCCCAATTT+GGG | 0.308400 | 6_4:+15718380 | None:intergenic |
| CAATTCAAGATGAACCATTA+TGG | 0.310393 | 6_4:-15718225 | Msa0979180:CDS |
| TCCTTGCTAAATCTATTATC+TGG | 0.317797 | 6_4:+15716842 | None:intergenic |
| TACCTTAATGTTCCTGGCTT+AGG | 0.318773 | 6_4:+15718253 | None:intergenic |
| GTTGGAGATGTGACCCAAAT+TGG | 0.323275 | 6_4:-15718393 | Msa0979180:CDS |
| CAACAGGGAACACAAATATA+AGG | 0.331390 | 6_4:-15718030 | Msa0979180:CDS |
| GGTTCCATCACTACTACTTC+TGG | 0.332285 | 6_4:-15716653 | Msa0979180:CDS |
| GCACCATACCTTAATGTTCC+TGG | 0.337883 | 6_4:+15718247 | None:intergenic |
| TTCCCTTGGCTGTTGATTGT+AGG | 0.338196 | 6_4:+15716878 | None:intergenic |
| ACCTTAATGTTCCTGGCTTA+GGG | 0.354026 | 6_4:+15718254 | None:intergenic |
| ACATCTTGTACAACAAGTTC+AGG | 0.356255 | 6_4:+15719476 | None:intergenic |
| AGACTAGCTGATTGTGCAAT+TGG | 0.358822 | 6_4:-15718355 | Msa0979180:CDS |
| ACCCTAAGCCAGGAACATTA+AGG | 0.369613 | 6_4:-15718255 | Msa0979180:CDS |
| GGTCTTATTGATGTTATTCA+TGG | 0.370022 | 6_4:-15717896 | Msa0979180:CDS |
| GTGAATATAATAGCTGGAAT+TGG | 0.370547 | 6_4:-15716790 | Msa0979180:CDS |
| CACAATCAGCTAGTCTTTGT+CGG | 0.381751 | 6_4:+15718362 | None:intergenic |
| GCAAGACCAGCCTCTCTTGT+TGG | 0.384223 | 6_4:-15716674 | Msa0979180:CDS |
| GTTCATGATTGTGTTCCAAC+AGG | 0.393072 | 6_4:-15718046 | Msa0979180:CDS |
| GAGGGTGATTTGTTCTTGAA+TGG | 0.394829 | 6_4:-15716761 | Msa0979180:CDS |
| CTCTAGGTCTAGGAGAAACT+TGG | 0.396252 | 6_4:-15718455 | Msa0979180:CDS |
| AAGAGGATGAAACAAAATTT+GGG | 0.396495 | 6_4:+15719510 | None:intergenic |
| GGCTATTTATCATGTGGAAC+TGG | 0.405816 | 6_4:-15718433 | Msa0979180:CDS |
| CTTATATTTGTGTTCCCTGT+TGG | 0.418044 | 6_4:+15718031 | None:intergenic |
| GGAGCATTCTTTAGACAAAC+TGG | 0.421504 | 6_4:-15716740 | Msa0979180:CDS |
| TCCCTTGGCTGTTGATTGTA+GGG | 0.426471 | 6_4:+15716879 | None:intergenic |
| AATTCATACAAGACAATTGA+TGG | 0.427271 | 6_4:-15718151 | Msa0979180:CDS |
| AGAAATTTAAATACATTCAA+AGG | 0.435853 | 6_4:-15716439 | Msa0979180:three_prime_UTR |
| GATCATATTCAAAAGAGATA+TGG | 0.439191 | 6_4:-15718203 | Msa0979180:CDS |
| GCAATCCAATTGATGATTGT+TGG | 0.439325 | 6_4:-15718411 | Msa0979180:CDS |
| TGTTACCTCTATATAGTCAA+TGG | 0.439359 | 6_4:+15716212 | None:intergenic |
| CATCTCCAACAATCATCAAT+TGG | 0.440002 | 6_4:+15718406 | None:intergenic |
| CATTGGGAAATGTATGCAAT+TGG | 0.444123 | 6_4:-15716914 | Msa0979180:CDS |
| GAACAATGATTACACACATT+GGG | 0.453403 | 6_4:-15716930 | Msa0979180:CDS |
| TAAATGTATTCCGCAGTTAG+TGG | 0.456499 | 6_4:-15716179 | Msa0979180:three_prime_UTR |
| GGATTTGGAAAAGATGCAAT+TGG | 0.464882 | 6_4:-15718334 | Msa0979180:CDS |
| CAGAAAGTGAATATAATAGC+TGG | 0.465031 | 6_4:-15716796 | Msa0979180:CDS |
| GTCCAAAATCCACTATGTTC+TGG | 0.466293 | 6_4:+15718001 | None:intergenic |
| ATGTAACAAATTAAAGTGGT+TGG | 0.471600 | 6_4:+15716291 | None:intergenic |
| TGTAACAAATTAAAGTGGTT+GGG | 0.474022 | 6_4:+15716292 | None:intergenic |
| AACAGGGAACACAAATATAA+GGG | 0.474310 | 6_4:-15718029 | Msa0979180:CDS |
| GTGCAAGAAATCTGTTCCCT+TGG | 0.476596 | 6_4:+15716864 | None:intergenic |
| GAAATTTAAATACATTCAAA+GGG | 0.484119 | 6_4:-15716438 | Msa0979180:three_prime_UTR |
| GCATCAATGTCTCTAGGTCT+AGG | 0.489694 | 6_4:-15718465 | Msa0979180:CDS |
| TTGGAGATGTGACCCAAATT+GGG | 0.502512 | 6_4:-15718392 | Msa0979180:CDS |
| TCCAACCATTGACTATATAG+AGG | 0.510647 | 6_4:-15716217 | Msa0979180:three_prime_UTR |
| TTGCATGTAACAAATTAAAG+TGG | 0.514022 | 6_4:+15716287 | None:intergenic |
| GTAGGAGCATCAATGTCTCT+AGG | 0.514562 | 6_4:-15718471 | Msa0979180:intron |
| GTTAATAACGTTATAATACA+TGG | 0.514568 | 6_4:-15718076 | Msa0979180:CDS |
| GGTGTGCTCACTTGCAAGAA+GGG | 0.516097 | 6_4:-15716632 | Msa0979180:CDS |
| TGGTGTGCTCACTTGCAAGA+AGG | 0.516822 | 6_4:-15716633 | Msa0979180:CDS |
| AGCTGGAATTGGAGATCAGA+GGG | 0.527960 | 6_4:-15716779 | Msa0979180:CDS |
| TCTTTGTCTAATTGTCGTGA+TGG | 0.533384 | 6_4:-15717917 | Msa0979180:CDS |
| TGGGAAATGTATGCAATTGG+AGG | 0.535593 | 6_4:-15716911 | Msa0979180:CDS |
| GGGCAGATTACTACTAATAG+AGG | 0.539038 | 6_4:+15716312 | None:intergenic |
| ATGGAACCAACAAGAGAGGC+TGG | 0.542918 | 6_4:+15716668 | None:intergenic |
| TTACATGCAATATATTTCAT+CGG | 0.543000 | 6_4:-15716274 | Msa0979180:three_prime_UTR |
| TGAACAATGATTACACACAT+TGG | 0.549687 | 6_4:-15716931 | Msa0979180:CDS |
| GAGAATTCTATAAGTAGTTG+TGG | 0.553941 | 6_4:+15716240 | None:intergenic |
| ACCTCTATATAGTCAATGGT+TGG | 0.558813 | 6_4:+15716216 | None:intergenic |
| TACAAGACAATTGATGGAAG+AGG | 0.566366 | 6_4:-15718145 | Msa0979180:CDS |
| ACCAGATAATAGATTTAGCA+AGG | 0.568377 | 6_4:-15716843 | Msa0979180:CDS |
| AATTCCATCACCATCAGAAA+CGG | 0.571243 | 6_4:+15717979 | None:intergenic |
| AACCCTACAATCAACAGCCA+AGG | 0.572050 | 6_4:-15716881 | Msa0979180:CDS |
| AACTTGGGCTATTTATCATG+TGG | 0.574554 | 6_4:-15718439 | Msa0979180:CDS |
| CACACAAGACAAGGACATGC+AGG | 0.577203 | 6_4:-15717795 | Msa0979180:CDS |
| AAGCCAGGAACATTAAGGTA+TGG | 0.578760 | 6_4:-15718250 | Msa0979180:CDS |
| TTCAGGGTCTTGAACTGAAG+AGG | 0.579107 | 6_4:+15719493 | None:intergenic |
| GCTAGTGTTCACATTGCAAA+TGG | 0.586396 | 6_4:-15718121 | Msa0979180:CDS |
| AGGGATTCACCAGAACATAG+TGG | 0.595458 | 6_4:-15718010 | Msa0979180:CDS |
| CATCTTGTACAACAAGTTCA+GGG | 0.601679 | 6_4:+15719477 | None:intergenic |
| TGGACCGTTTCTGATGGTGA+TGG | 0.601944 | 6_4:-15717983 | Msa0979180:CDS |
| CACACCAGAAGTAGTAGTGA+TGG | 0.602959 | 6_4:+15716649 | None:intergenic |
| GATGCAGTAAACCCTAAGCC+AGG | 0.603794 | 6_4:-15718265 | Msa0979180:CDS |
| TTCATGATTGTGTTCCAACA+GGG | 0.604224 | 6_4:-15718045 | Msa0979180:CDS |
| AGATTACTACTAATAGAGGA+TGG | 0.619460 | 6_4:+15716316 | None:intergenic |
| GGGAAATGTATGCAATTGGA+GGG | 0.622895 | 6_4:-15716910 | Msa0979180:CDS |
| TTTGGAAAAGATGCAATTGG+TGG | 0.625951 | 6_4:-15718331 | Msa0979180:CDS |
| AAAATAAATTGTGATATGAG+TGG | 0.626274 | 6_4:-15716125 | None:intergenic |
| ACCCTACAATCAACAGCCAA+GGG | 0.631197 | 6_4:-15716880 | Msa0979180:CDS |
| TCTAGGTCTAGGAGAAACTT+GGG | 0.631443 | 6_4:-15718454 | Msa0979180:CDS |
| TGATTCTTACACACAAGACA+AGG | 0.643329 | 6_4:-15717804 | Msa0979180:CDS |
| AGTGTTCACATTGCAAATGG+TGG | 0.646316 | 6_4:-15718118 | Msa0979180:CDS |
| TATATTTCATCGGTTAACAG+TGG | 0.648356 | 6_4:-15716264 | Msa0979180:three_prime_UTR |
| TAGCTGGAATTGGAGATCAG+AGG | 0.658304 | 6_4:-15716780 | Msa0979180:CDS |
| AGTGATGGAACCAACAAGAG+AGG | 0.669990 | 6_4:+15716664 | None:intergenic |
| TTGTTGTACAAGATGTACAA+AGG | 0.691137 | 6_4:-15719469 | Msa0979180:intron |
| TCATTGATGAAAATTAGAGA+CGG | 0.701248 | 6_4:+15716510 | None:intergenic |
| GGCTTGTCCAAAGAATGCCA+AGG | 0.703891 | 6_4:-15717742 | Msa0979180:intron |
| TAGACATGGCTACTTTCATG+TGG | 0.715841 | 6_4:-15716954 | Msa0979180:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GATTTTGTATTTTTTTATTT+TGG | + | chr6_4:15716752-15716771 | None:intergenic | 10.0% |
| !! | CATAATATATATAATTAACT+TGG | + | chr6_4:15717161-15717180 | None:intergenic | 10.0% |
| !! | ATGCTAAAAAAAAATATTAA+AGG | + | chr6_4:15718047-15718066 | None:intergenic | 10.0% |
| !!! | AGACTTTTTTCTTTATAAAT+GGG | + | chr6_4:15716932-15716951 | None:intergenic | 15.0% |
| !!! | AAGACTTTTTTCTTTATAAA+TGG | + | chr6_4:15716933-15716952 | None:intergenic | 15.0% |
| !! | TTTATAAAGAAAAAAGTCTT+TGG | - | chr6_4:15716933-15716952 | Msa0979180:CDS | 15.0% |
| !!! | ATTTTAATTTCTCTTTTTGT+AGG | - | chr6_4:15717238-15717257 | Msa0979180:intron | 15.0% |
| !!! | AATATTTTTTTTTAGCATAG+TGG | - | chr6_4:15718049-15718068 | Msa0979180:CDS | 15.0% |
| !! | AACCCAAATTAAAAAAAAAT+TGG | - | chr6_4:15718137-15718156 | Msa0979180:CDS | 15.0% |
| !! | ACCCAAATTAAAAAAAAATT+GGG | - | chr6_4:15718138-15718157 | Msa0979180:CDS | 15.0% |
| !! | CAATCACAAATAAAATTATT+TGG | + | chr6_4:15718271-15718290 | None:intergenic | 15.0% |
| !!! | GACATTTTTTTTATGTTTAT+GGG | + | chr6_4:15718438-15718457 | None:intergenic | 15.0% |
| !!! | TGACATTTTTTTTATGTTTA+TGG | + | chr6_4:15718439-15718458 | None:intergenic | 15.0% |
| !! | CTGAAAACAATAATTATTTA+TGG | + | chr6_4:15718750-15718769 | None:intergenic | 15.0% |
| !!! | TGATTTAACTTTTTTAATAG+TGG | - | chr6_4:15719237-15719256 | Msa0979180:intron | 15.0% |
| !! | AGAAATTTAAATACATTCAA+AGG | - | chr6_4:15719288-15719307 | Msa0979180:intron | 15.0% |
| !! | GAAATTTAAATACATTCAAA+GGG | - | chr6_4:15719289-15719308 | Msa0979180:intron | 15.0% |
| !! | AAAGTTTGATTCATATGTAA+TGG | - | chr6_4:15716391-15716410 | Msa0979180:three_prime_UTR | 20.0% |
| !!! | TCAATTAAAACAAGAACTTT+TGG | - | chr6_4:15717551-15717570 | Msa0979180:intron | 20.0% |
| !! | GTTAATAACGTTATAATACA+TGG | - | chr6_4:15717651-15717670 | Msa0979180:intron | 20.0% |
| !! | TGTTTAATTCACAACATATT+TGG | - | chr6_4:15717775-15717794 | Msa0979180:CDS | 20.0% |
| !!! | ACTATTGCTTTTAATCATTT+TGG | - | chr6_4:15717957-15717976 | Msa0979180:CDS | 20.0% |
| !!! | GCCCAATTTTTTTTTAATTT+GGG | + | chr6_4:15718142-15718161 | None:intergenic | 20.0% |
| !!! | TGCCCAATTTTTTTTTAATT+TGG | + | chr6_4:15718143-15718162 | None:intergenic | 20.0% |
| !!! | TTTGTTTTTAAAAGAGAAAC+TGG | - | chr6_4:15718178-15718197 | Msa0979180:CDS | 20.0% |
| !! | ATGATACTACTAAGAAATTA+GGG | + | chr6_4:15718535-15718554 | None:intergenic | 20.0% |
| !!! | TTGAATTTTTTAAGGTAGTT+AGG | + | chr6_4:15718624-15718643 | None:intergenic | 20.0% |
| !!! | CCTACTTTTTGAATTTTTTA+AGG | + | chr6_4:15718632-15718651 | None:intergenic | 20.0% |
| !! | CCTTAAAAAATTCAAAAAGT+AGG | - | chr6_4:15718629-15718648 | Msa0979180:intron | 20.0% |
| !! | AAATTCAAAAAGTAGGATAA+AGG | - | chr6_4:15718636-15718655 | Msa0979180:intron | 20.0% |
| !! | TAAAAAAAGTTGAAATGATG+AGG | - | chr6_4:15719139-15719158 | Msa0979180:intron | 20.0% |
| !! | AAAAAAAGTTGAAATGATGA+GGG | - | chr6_4:15719140-15719159 | Msa0979180:intron | 20.0% |
| !!! | AACTGATCTTCAATTTTAAT+CGG | + | chr6_4:15719188-15719207 | None:intergenic | 20.0% |
| !! | TTACATGCAATATATTTCAT+CGG | - | chr6_4:15719453-15719472 | Msa0979180:intron | 20.0% |
| !!! | TTTTTTGGAAGAGTAATTGA+AGG | + | chr6_4:15716152-15716171 | None:intergenic | 25.0% |
| !!! | GAAAGAGAAGTCATTTTTTT+TGG | + | chr6_4:15716167-15716186 | None:intergenic | 25.0% |
| ! | AAGAGGATGAAACAAAATTT+GGG | + | chr6_4:15716220-15716239 | None:intergenic | 25.0% |
| ! | CACATTAGATACAATGTATT+TGG | + | chr6_4:15716417-15716436 | None:intergenic | 25.0% |
| ! | ATTACTCTATGATATCACTT+TGG | + | chr6_4:15716609-15716628 | None:intergenic | 25.0% |
| ! | ATTAATCTCAAAGCTCATAT+AGG | - | chr6_4:15716676-15716695 | Msa0979180:CDS | 25.0% |
| !! | ATTTAATAGAAGTGCATTGT+TGG | - | chr6_4:15716851-15716870 | Msa0979180:CDS | 25.0% |
| !! | CTTTTGAATATGATCCATAA+TGG | + | chr6_4:15717519-15717538 | None:intergenic | 25.0% |
| ! | GATCATATTCAAAAGAGATA+TGG | - | chr6_4:15717524-15717543 | Msa0979180:intron | 25.0% |
| ! | AATTCATACAAGACAATTGA+TGG | - | chr6_4:15717576-15717595 | Msa0979180:intron | 25.0% |
| !!! | CTTTTAATCATTTTGGTGAA+GGG | - | chr6_4:15717964-15717983 | Msa0979180:CDS | 25.0% |
| !! | TGTTAGCAAAAATGTGTTTT+TGG | - | chr6_4:15718090-15718109 | Msa0979180:CDS | 25.0% |
| !! | GTTAGCAAAAATGTGTTTTT+GGG | - | chr6_4:15718091-15718110 | Msa0979180:CDS | 25.0% |
| ! | TTTAATGATGTTGAATAACG+TGG | - | chr6_4:15718201-15718220 | Msa0979180:CDS | 25.0% |
| ! | AAGAAAATCTCTCTATAGTT+GGG | + | chr6_4:15718375-15718394 | None:intergenic | 25.0% |
| ! | AAAGAAAATCTCTCTATAGT+TGG | + | chr6_4:15718376-15718395 | None:intergenic | 25.0% |
| ! | CATGATACTACTAAGAAATT+AGG | + | chr6_4:15718536-15718555 | None:intergenic | 25.0% |
| ! | AATTTCTTAGTAGTATCATG+AGG | - | chr6_4:15718536-15718555 | Msa0979180:intron | 25.0% |
| !!! | TTAGGTCTTTACTTTGTTTT+TGG | + | chr6_4:15718572-15718591 | None:intergenic | 25.0% |
| !! | CACATTTCTTTGAATTTGTT+AGG | + | chr6_4:15718590-15718609 | None:intergenic | 25.0% |
| ! | TCATTGATGAAAATTAGAGA+CGG | + | chr6_4:15719220-15719239 | None:intergenic | 25.0% |
| ! | TGTAACAAATTAAAGTGGTT+GGG | + | chr6_4:15719438-15719457 | None:intergenic | 25.0% |
| ! | ATGTAACAAATTAAAGTGGT+TGG | + | chr6_4:15719439-15719458 | None:intergenic | 25.0% |
| ! | TTGCATGTAACAAATTAAAG+TGG | + | chr6_4:15719443-15719462 | None:intergenic | 25.0% |
| GAAGAGGATGAAACAAAATT+TGG | + | chr6_4:15716221-15716240 | None:intergenic | 30.0% | |
| TTGTTGTACAAGATGTACAA+AGG | - | chr6_4:15716258-15716277 | Msa0979180:three_prime_UTR | 30.0% | |
| AGCTGAGAATAAACTAGAAT+CGG | - | chr6_4:15716780-15716799 | Msa0979180:CDS | 30.0% | |
| ACAATGTGGTGAATTATCAT+CGG | + | chr6_4:15716901-15716920 | None:intergenic | 30.0% | |
| ! | AATGGGTTTATATGACAATG+TGG | + | chr6_4:15716915-15716934 | None:intergenic | 30.0% |
| GTTTAATTACTGTACATCGA+CGG | - | chr6_4:15717074-15717093 | Msa0979180:intron | 30.0% | |
| CAATTCAAGATGAACCATTA+TGG | - | chr6_4:15717502-15717521 | Msa0979180:intron | 30.0% | |
| AACAGGGAACACAAATATAA+GGG | - | chr6_4:15717698-15717717 | Msa0979180:intron | 30.0% | |
| !! | GGTCTTATTGATGTTATTCA+TGG | - | chr6_4:15717831-15717850 | Msa0979180:CDS | 30.0% |
| ! | TCATGACAAAGTTATGCTTT+TGG | - | chr6_4:15717893-15717912 | Msa0979180:CDS | 30.0% |
| ! | CATGACAAAGTTATGCTTTT+GGG | - | chr6_4:15717894-15717913 | Msa0979180:CDS | 30.0% |
| !! | GCTTTTAATCATTTTGGTGA+AGG | - | chr6_4:15717963-15717982 | Msa0979180:CDS | 30.0% |
| TGTCATATATATGCATACCT+TGG | + | chr6_4:15718005-15718024 | None:intergenic | 30.0% | |
| GGGAGTAAAAATATTTGCTT+AGG | - | chr6_4:15718111-15718130 | Msa0979180:CDS | 30.0% | |
| TGTGTAAGATCAACTTCTTT+AGG | - | chr6_4:15718295-15718314 | Msa0979180:CDS | 30.0% | |
| ! | GCTATTATGAGAGATTTTGA+AGG | + | chr6_4:15718492-15718511 | None:intergenic | 30.0% |
| ! | ATTGTTTTCAGATGTAGACA+TGG | - | chr6_4:15718759-15718778 | Msa0979180:intron | 30.0% |
| TGAACAATGATTACACACAT+TGG | - | chr6_4:15718796-15718815 | Msa0979180:intron | 30.0% | |
| GAACAATGATTACACACATT+GGG | - | chr6_4:15718797-15718816 | Msa0979180:intron | 30.0% | |
| ACCAGATAATAGATTTAGCA+AGG | - | chr6_4:15718884-15718903 | Msa0979180:intron | 30.0% | |
| TCCTTGCTAAATCTATTATC+TGG | + | chr6_4:15718888-15718907 | None:intergenic | 30.0% | |
| CAGAAAGTGAATATAATAGC+TGG | - | chr6_4:15718931-15718950 | Msa0979180:intron | 30.0% | |
| GTGAATATAATAGCTGGAAT+TGG | - | chr6_4:15718937-15718956 | Msa0979180:intron | 30.0% | |
| ! | TTTTAGTAGCGAATTAGCAA+CGG | + | chr6_4:15719124-15719143 | None:intergenic | 30.0% |
| AGATTACTACTAATAGAGGA+TGG | + | chr6_4:15719414-15719433 | None:intergenic | 30.0% | |
| ! | TATATTTCATCGGTTAACAG+TGG | - | chr6_4:15719463-15719482 | Msa0979180:intron | 30.0% |
| GAGAATTCTATAAGTAGTTG+TGG | + | chr6_4:15719490-15719509 | None:intergenic | 30.0% | |
| TGTTACCTCTATATAGTCAA+TGG | + | chr6_4:15719518-15719537 | None:intergenic | 30.0% | |
| !!! | TTACTTTTTTCCACTAACTG+CGG | + | chr6_4:15719561-15719580 | None:intergenic | 30.0% |
| CATCTTGTACAACAAGTTCA+GGG | + | chr6_4:15716253-15716272 | None:intergenic | 35.0% | |
| ACATCTTGTACAACAAGTTC+AGG | + | chr6_4:15716254-15716273 | None:intergenic | 35.0% | |
| AACTTGGGCTATTTATCATG+TGG | - | chr6_4:15717288-15717307 | Msa0979180:intron | 35.0% | |
| ! | GCAATCCAATTGATGATTGT+TGG | - | chr6_4:15717316-15717335 | Msa0979180:intron | 35.0% |
| CATCTCCAACAATCATCAAT+TGG | + | chr6_4:15717324-15717343 | None:intergenic | 35.0% | |
| GGATTTGGAAAAGATGCAAT+TGG | - | chr6_4:15717393-15717412 | Msa0979180:intron | 35.0% | |
| TTTGGAAAAGATGCAATTGG+TGG | - | chr6_4:15717396-15717415 | Msa0979180:intron | 35.0% | |
| ! | GATGCAATTGGTGGTAAAAA+TGG | - | chr6_4:15717405-15717424 | Msa0979180:intron | 35.0% |
| !! | ATCTACATTGTCACTGATTC+AGG | - | chr6_4:15717432-15717451 | Msa0979180:intron | 35.0% |
| TACAAGACAATTGATGGAAG+AGG | - | chr6_4:15717582-15717601 | Msa0979180:intron | 35.0% | |
| TTCATGATTGTGTTCCAACA+GGG | - | chr6_4:15717682-15717701 | Msa0979180:intron | 35.0% | |
| CTTATATTTGTGTTCCCTGT+TGG | + | chr6_4:15717699-15717718 | None:intergenic | 35.0% | |
| CAACAGGGAACACAAATATA+AGG | - | chr6_4:15717697-15717716 | Msa0979180:intron | 35.0% | |
| AATTCCATCACCATCAGAAA+CGG | + | chr6_4:15717751-15717770 | None:intergenic | 35.0% | |
| TCTTTGTCTAATTGTCGTGA+TGG | - | chr6_4:15717810-15717829 | Msa0979180:CDS | 35.0% | |
| TGATTCTTACACACAAGACA+AGG | - | chr6_4:15717923-15717942 | Msa0979180:CDS | 35.0% | |
| ! | GGAGAGAGAATTTTCTATCA+CGG | - | chr6_4:15718316-15718335 | Msa0979180:CDS | 35.0% |
| TCTCTATAGTTGGGAATATG+GGG | + | chr6_4:15718366-15718385 | None:intergenic | 35.0% | |
| CTCTCTATAGTTGGGAATAT+GGG | + | chr6_4:15718367-15718386 | None:intergenic | 35.0% | |
| TCTCTCTATAGTTGGGAATA+TGG | + | chr6_4:15718368-15718387 | None:intergenic | 35.0% | |
| CATTGGGAAATGTATGCAAT+TGG | - | chr6_4:15718813-15718832 | Msa0979180:intron | 35.0% | |
| ! | TCCAACCATTGACTATATAG+AGG | - | chr6_4:15719510-15719529 | Msa0979180:CDS | 35.0% |
| ACCTCTATATAGTCAATGGT+TGG | + | chr6_4:15719514-15719533 | None:intergenic | 35.0% | |
| TAAATGTATTCCGCAGTTAG+TGG | - | chr6_4:15719548-15719567 | Msa0979180:CDS | 35.0% | |
| GGTGAATTATCATCGGATGT+CGG | + | chr6_4:15716894-15716913 | None:intergenic | 40.0% | |
| TCTAGGTCTAGGAGAAACTT+GGG | - | chr6_4:15717273-15717292 | Msa0979180:intron | 40.0% | |
| GGCTATTTATCATGTGGAAC+TGG | - | chr6_4:15717294-15717313 | Msa0979180:intron | 40.0% | |
| TTGGAGATGTGACCCAAATT+GGG | - | chr6_4:15717335-15717354 | Msa0979180:intron | 40.0% | |
| !! | CACAATCAGCTAGTCTTTGT+CGG | + | chr6_4:15717368-15717387 | None:intergenic | 40.0% |
| ! | AGACTAGCTGATTGTGCAAT+TGG | - | chr6_4:15717372-15717391 | Msa0979180:intron | 40.0% |
| GCTGATTGTGCAATTGGATT+TGG | - | chr6_4:15717378-15717397 | Msa0979180:intron | 40.0% | |
| ACCTTAATGTTCCTGGCTTA+GGG | + | chr6_4:15717476-15717495 | None:intergenic | 40.0% | |
| TACCTTAATGTTCCTGGCTT+AGG | + | chr6_4:15717477-15717496 | None:intergenic | 40.0% | |
| AAGCCAGGAACATTAAGGTA+TGG | - | chr6_4:15717477-15717496 | Msa0979180:intron | 40.0% | |
| GCTAGTGTTCACATTGCAAA+TGG | - | chr6_4:15717606-15717625 | Msa0979180:intron | 40.0% | |
| AGTGTTCACATTGCAAATGG+TGG | - | chr6_4:15717609-15717628 | Msa0979180:intron | 40.0% | |
| GTTCATGATTGTGTTCCAAC+AGG | - | chr6_4:15717681-15717700 | Msa0979180:intron | 40.0% | |
| !!! | CACCAGAACATAGTGGATTT+TGG | - | chr6_4:15717724-15717743 | Msa0979180:intron | 40.0% |
| GTCCAAAATCCACTATGTTC+TGG | + | chr6_4:15717729-15717748 | None:intergenic | 40.0% | |
| ATGCATACCTTGGCATTCTT+TGG | + | chr6_4:15717995-15718014 | None:intergenic | 40.0% | |
| GGGGTTATCTACATAGAGAT+GGG | + | chr6_4:15718404-15718423 | None:intergenic | 40.0% | |
| TGGGGTTATCTACATAGAGA+TGG | + | chr6_4:15718405-15718424 | None:intergenic | 40.0% | |
| TATGTAGATAACCCCACAAG+TGG | - | chr6_4:15718409-15718428 | Msa0979180:CDS | 40.0% | |
| ATGTAGATAACCCCACAAGT+GGG | - | chr6_4:15718410-15718429 | Msa0979180:CDS | 40.0% | |
| ! | TAGACATGGCTACTTTCATG+TGG | - | chr6_4:15718773-15718792 | Msa0979180:intron | 40.0% |
| TGGGAAATGTATGCAATTGG+AGG | - | chr6_4:15718816-15718835 | Msa0979180:intron | 40.0% | |
| GGGAAATGTATGCAATTGGA+GGG | - | chr6_4:15718817-15718836 | Msa0979180:intron | 40.0% | |
| !! | GAGGGTGATTTGTTCTTGAA+TGG | - | chr6_4:15718966-15718985 | Msa0979180:intron | 40.0% |
| ! | GGAGCATTCTTTAGACAAAC+TGG | - | chr6_4:15718987-15719006 | Msa0979180:intron | 40.0% |
| GGGCAGATTACTACTAATAG+AGG | + | chr6_4:15719418-15719437 | None:intergenic | 40.0% | |
| TTCAGGGTCTTGAACTGAAG+AGG | + | chr6_4:15716237-15716256 | None:intergenic | 45.0% | |
| CATCGGATGTCGGTGTAAAA+TGG | + | chr6_4:15716884-15716903 | None:intergenic | 45.0% | |
| !! | GTAGGAGCATCAATGTCTCT+AGG | - | chr6_4:15717256-15717275 | Msa0979180:intron | 45.0% |
| GCATCAATGTCTCTAGGTCT+AGG | - | chr6_4:15717262-15717281 | Msa0979180:intron | 45.0% | |
| CTCTAGGTCTAGGAGAAACT+TGG | - | chr6_4:15717272-15717291 | Msa0979180:intron | 45.0% | |
| GTTGGAGATGTGACCCAAAT+TGG | - | chr6_4:15717334-15717353 | Msa0979180:intron | 45.0% | |
| GTCGGTTGTTCTCCCAATTT+GGG | + | chr6_4:15717350-15717369 | None:intergenic | 45.0% | |
| ! | TGTCGGTTGTTCTCCCAATT+TGG | + | chr6_4:15717351-15717370 | None:intergenic | 45.0% |
| ACCCTAAGCCAGGAACATTA+AGG | - | chr6_4:15717472-15717491 | Msa0979180:intron | 45.0% | |
| GCACCATACCTTAATGTTCC+TGG | + | chr6_4:15717483-15717502 | None:intergenic | 45.0% | |
| AGGGATTCACCAGAACATAG+TGG | - | chr6_4:15717717-15717736 | Msa0979180:intron | 45.0% | |
| ! | GGATTTTGGACCGTTTCTGA+TGG | - | chr6_4:15717738-15717757 | Msa0979180:intron | 45.0% |
| TTTATGGGTTCCCACTTGTG+GGG | + | chr6_4:15718423-15718442 | None:intergenic | 45.0% | |
| GTTTATGGGTTCCCACTTGT+GGG | + | chr6_4:15718424-15718443 | None:intergenic | 45.0% | |
| TGTTTATGGGTTCCCACTTG+TGG | + | chr6_4:15718425-15718444 | None:intergenic | 45.0% | |
| AACCCTACAATCAACAGCCA+AGG | - | chr6_4:15718846-15718865 | Msa0979180:intron | 45.0% | |
| ACCCTACAATCAACAGCCAA+GGG | - | chr6_4:15718847-15718866 | Msa0979180:intron | 45.0% | |
| ! | TCCCTTGGCTGTTGATTGTA+GGG | + | chr6_4:15718851-15718870 | None:intergenic | 45.0% |
| ! | TTCCCTTGGCTGTTGATTGT+AGG | + | chr6_4:15718852-15718871 | None:intergenic | 45.0% |
| GTGCAAGAAATCTGTTCCCT+TGG | + | chr6_4:15718866-15718885 | None:intergenic | 45.0% | |
| TAGCTGGAATTGGAGATCAG+AGG | - | chr6_4:15718947-15718966 | Msa0979180:intron | 45.0% | |
| AGCTGGAATTGGAGATCAGA+GGG | - | chr6_4:15718948-15718967 | Msa0979180:intron | 45.0% | |
| ! | AGTGATGGAACCAACAAGAG+AGG | + | chr6_4:15719066-15719085 | None:intergenic | 45.0% |
| GGTTCCATCACTACTACTTC+TGG | - | chr6_4:15719074-15719093 | Msa0979180:intron | 45.0% | |
| CACACCAGAAGTAGTAGTGA+TGG | + | chr6_4:15719081-15719100 | None:intergenic | 45.0% | |
| !!! | TTTTTTTTTTTTTTTTGAAA+AGG | - | chr6_4:15716984-15717003 | Msa0979180:intron | 5.0% |
| GATGCAGTAAACCCTAAGCC+AGG | - | chr6_4:15717462-15717481 | Msa0979180:intron | 50.0% | |
| ! | TGGACCGTTTCTGATGGTGA+TGG | - | chr6_4:15717744-15717763 | Msa0979180:CDS | 50.0% |
| CACACAAGACAAGGACATGC+AGG | - | chr6_4:15717932-15717951 | Msa0979180:CDS | 50.0% | |
| GGCTTGTCCAAAGAATGCCA+AGG | - | chr6_4:15717985-15718004 | Msa0979180:CDS | 50.0% | |
| ATGGAACCAACAAGAGAGGC+TGG | + | chr6_4:15719062-15719081 | None:intergenic | 50.0% | |
| TGGTGTGCTCACTTGCAAGA+AGG | - | chr6_4:15719094-15719113 | Msa0979180:intron | 50.0% | |
| GGTGTGCTCACTTGCAAGAA+GGG | - | chr6_4:15719095-15719114 | Msa0979180:intron | 50.0% | |
| GCAAGACCAGCCTCTCTTGT+TGG | - | chr6_4:15719053-15719072 | Msa0979180:intron | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_4 | gene | 15716126 | 15719623 | 15716126 | ID=Msa0979180;Name=Msa0979180 |
| chr6_4 | mRNA | 15716126 | 15719623 | 15716126 | ID=Msa0979180-mRNA-1;Parent=Msa0979180;Name=Msa0979180-mRNA-1;_AED=0.00;_eAED=0.00;_QI=47|1|1|1|1|1|3|493|404 |
| chr6_4 | exon | 15716126 | 15716979 | 15716126 | ID=Msa0979180-mRNA-1:exon:5102;Parent=Msa0979180-mRNA-1 |
| chr6_4 | exon | 15717743 | 15718489 | 15717743 | ID=Msa0979180-mRNA-1:exon:5101;Parent=Msa0979180-mRNA-1 |
| chr6_4 | exon | 15719470 | 15719623 | 15719470 | ID=Msa0979180-mRNA-1:exon:5100;Parent=Msa0979180-mRNA-1 |
| chr6_4 | five_prime_UTR | 15719577 | 15719623 | 15719577 | ID=Msa0979180-mRNA-1:five_prime_utr;Parent=Msa0979180-mRNA-1 |
| chr6_4 | CDS | 15719470 | 15719576 | 15719470 | ID=Msa0979180-mRNA-1:cds;Parent=Msa0979180-mRNA-1 |
| chr6_4 | CDS | 15717743 | 15718489 | 15717743 | ID=Msa0979180-mRNA-1:cds;Parent=Msa0979180-mRNA-1 |
| chr6_4 | CDS | 15716619 | 15716979 | 15716619 | ID=Msa0979180-mRNA-1:cds;Parent=Msa0979180-mRNA-1 |
| chr6_4 | three_prime_UTR | 15716126 | 15716618 | 15716126 | ID=Msa0979180-mRNA-1:three_prime_utr;Parent=Msa0979180-mRNA-1 |
| Gene Sequence |
| Protein sequence |
