AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0258670

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258670 MtrunA17_Chr2g0321241 99.542 437 2 0 1 437 1 437 0.0 900
Msa0258670 MtrunA17_Chr4g0026631 91.304 437 33 1 1 437 1 432 0.0 813
Msa0258670 MtrunA17_Chr4g0052271 48.052 308 137 5 71 356 37 343 4.99e-88 277
Msa0258670 MtrunA17_Chr4g0004121 41.509 371 168 7 76 435 195 527 3.21e-87 279
Msa0258670 MtrunA17_Chr7g0246111 42.598 331 174 5 106 435 189 504 2.86e-77 252
Msa0258670 MtrunA17_Chr6g0459561 40.294 340 169 4 106 439 351 662 3.14e-73 245
Msa0258670 MtrunA17_Chr6g0459541 38.567 363 160 8 106 435 11 343 6.66e-70 228
Msa0258670 MtrunA17_Chr2g0297851 71.812 149 32 2 1 149 1 139 2.70e-64 211
Msa0258670 MtrunA17_Chr2g0297851 77.165 127 24 1 5 131 125 246 2.66e-55 187
Msa0258670 MtrunA17_Chr6g0459551 34.447 389 181 10 106 454 71 425 4.91e-58 199
Msa0258670 MtrunA17_Chr4g0038101 46.288 229 117 5 132 356 721 947 1.81e-57 207
Msa0258670 MtrunA17_Chr1g0202381 36.364 330 184 7 42 356 375 693 3.72e-57 204
Msa0258670 MtrunA17_Chr6g0462581 46.725 229 114 5 132 356 500 724 2.44e-56 202
Msa0258670 MtrunA17_Chr8g0387641 43.860 228 125 3 131 356 520 746 1.06e-55 201
Msa0258670 MtrunA17_Chr5g0397121 39.057 297 170 6 66 356 447 738 9.61e-55 197
Msa0258670 MtrunA17_Chr1g0195731 45.662 219 114 4 132 346 934 1151 5.28e-53 194
Msa0258670 MtrunA17_Chr1g0204031 43.119 218 118 4 132 345 557 772 2.17e-52 191
Msa0258670 MtrunA17_Chr1g0202371 41.667 228 127 4 132 356 397 621 8.18e-52 188
Msa0258670 MtrunA17_Chr1g0195741 44.545 220 115 5 132 346 938 1155 6.34e-51 188
Msa0258670 MtrunA17_Chr3g0116131 44.292 219 117 4 132 346 902 1119 6.52e-51 188
Msa0258670 MtrunA17_Chr6g0459531 32.911 316 156 6 121 435 56 316 1.50e-48 171
Msa0258670 MtrunA17_Chr3g0127401 40.870 230 129 5 131 356 80 306 3.87e-48 171
Msa0258670 MtrunA17_Chr3g0127431 40.343 233 132 5 131 359 83 312 4.96e-48 172
Msa0258670 MtrunA17_Chr1g0180791 42.920 226 121 6 126 345 472 695 7.33e-48 178
Msa0258670 MtrunA17_Chr1g0180791 37.607 234 138 6 132 361 205 434 6.75e-41 157
Msa0258670 MtrunA17_Chr2g0327121 42.982 228 118 7 126 345 474 697 7.97e-48 177
Msa0258670 MtrunA17_Chr2g0327121 36.325 234 141 6 132 361 207 436 1.42e-39 154
Msa0258670 MtrunA17_Chr7g0264521 42.478 226 122 6 126 345 473 696 1.14e-47 177
Msa0258670 MtrunA17_Chr7g0264521 37.143 245 142 7 125 361 195 435 1.56e-40 156
Msa0258670 MtrunA17_Chr7g0255641 39.300 257 148 6 110 360 634 888 1.11e-45 172
Msa0258670 MtrunA17_Chr7g0255641 39.683 189 101 6 156 342 425 602 5.85e-29 122
Msa0258670 MtrunA17_Chr7g0255721 38.911 257 149 6 110 360 661 915 1.66e-44 169
Msa0258670 MtrunA17_Chr7g0255721 38.119 202 113 4 169 360 422 621 1.69e-32 132
Msa0258670 MtrunA17_Chr3g0145011 38.115 244 137 9 125 359 131 369 6.41e-43 157
Msa0258670 MtrunA17_Chr4g0050561 39.167 240 133 8 121 351 145 380 1.61e-42 157
Msa0258670 MtrunA17_Chr3g0141901 37.705 244 138 9 125 359 128 366 1.64e-42 156
Msa0258670 MtrunA17_Chr7g0255651 37.344 241 144 5 121 356 271 509 5.70e-42 159
Msa0258670 MtrunA17_Chr7g0255651 28.571 224 145 7 145 360 30 246 4.27e-19 90.9
Msa0258670 MtrunA17_Chr7g0217421 40.773 233 122 9 121 343 26 252 6.75e-42 155
Msa0258670 MtrunA17_Chr7g0255691 38.783 263 150 7 110 364 262 521 6.72e-41 155
Msa0258670 MtrunA17_Chr7g0255691 31.897 232 133 8 137 355 22 241 1.40e-24 107
Msa0258670 MtrunA17_Chr8g0345461 37.903 248 134 9 112 347 145 384 1.17e-40 152
Msa0258670 MtrunA17_Chr8g0362771 38.034 234 134 7 131 360 236 462 1.65e-40 156
Msa0258670 MtrunA17_Chr4g0052411 37.895 285 161 9 120 396 215 491 2.60e-40 155
Msa0258670 MtrunA17_Chr4g0014731 37.555 229 133 7 126 347 162 387 6.55e-40 150
Msa0258670 MtrunA17_Chr1g0192151 37.555 229 133 7 126 347 161 386 6.70e-40 150
Msa0258670 MtrunA17_Chr2g0297281 43.049 223 115 8 129 343 281 499 1.46e-39 153
Msa0258670 MtrunA17_Chr1g0200081 37.652 247 135 9 112 347 155 393 3.83e-39 148
Msa0258670 MtrunA17_Chr7g0255901 36.481 233 130 4 130 351 637 862 1.38e-38 151
Msa0258670 MtrunA17_Chr7g0262801 34.328 268 152 9 126 372 181 445 4.03e-38 145
Msa0258670 MtrunA17_Chr1g0182711 33.955 268 153 9 126 372 182 446 7.43e-38 144
Msa0258670 MtrunA17_Chr3g0108321 39.896 193 110 4 128 315 155 346 1.66e-37 142
Msa0258670 MtrunA17_Chr7g0260601 41.202 233 123 8 129 351 237 465 2.10e-37 147
Msa0258670 MtrunA17_Chr7g0248361 42.478 226 112 9 132 345 192 411 2.30e-37 146
Msa0258670 MtrunA17_Chr4g0031821 41.631 233 122 8 129 351 317 545 4.51e-37 146
Msa0258670 MtrunA17_Chr6g0476861 41.964 224 116 8 132 345 197 416 7.57e-37 145
Msa0258670 MtrunA17_Chr2g0327231 42.442 172 94 4 122 289 335 505 7.44e-36 140
Msa0258670 MtrunA17_Chr3g0143721 38.961 231 131 7 132 356 249 475 8.38e-36 142
Msa0258670 MtrunA17_Chr2g0277831 36.842 228 134 7 130 351 531 754 1.68e-35 141
Msa0258670 MtrunA17_Chr2g0277831 38.251 183 106 4 166 343 277 457 3.99e-29 122
Msa0258670 MtrunA17_Chr6g0456351 36.800 250 142 8 122 361 304 547 3.77e-35 139
Msa0258670 MtrunA17_Chr3g0094871 41.071 224 119 8 131 345 10 229 8.57e-35 136
Msa0258670 MtrunA17_Chr1g0158881 39.914 233 124 10 121 346 318 541 9.07e-35 139
Msa0258670 MtrunA17_Chr3g0135761 36.818 220 130 7 131 346 221 435 2.97e-34 137
Msa0258670 MtrunA17_Chr5g0429571 38.136 236 135 5 131 358 312 544 5.18e-34 137
Msa0258670 MtrunA17_Chr5g0432631 36.818 220 130 7 131 346 228 442 1.25e-33 136
Msa0258670 MtrunA17_Chr3g0086411 39.153 189 104 5 130 312 213 396 2.18e-33 133
Msa0258670 MtrunA17_Chr3g0086411 36.496 137 77 4 219 346 7 142 1.27e-15 79.7
Msa0258670 MtrunA17_Chr2g0331161 39.474 228 118 7 131 347 414 632 3.96e-33 134
Msa0258670 MtrunA17_Chr3g0135721 36.036 222 129 8 131 346 223 437 4.14e-33 134
Msa0258670 MtrunA17_Chr4g0033451 35.470 234 141 5 131 356 379 610 5.67e-33 134
Msa0258670 MtrunA17_Chr3g0104211 38.912 239 135 8 131 361 303 538 1.32e-32 132
Msa0258670 MtrunA17_Chr2g0316851 34.978 223 134 7 134 347 596 816 2.84e-32 132
Msa0258670 MtrunA17_Chr3g0086401 32.414 290 168 10 166 439 128 405 7.85e-32 130
Msa0258670 MtrunA17_Chr3g0086401 37.968 187 111 4 130 313 383 567 1.83e-30 126
Msa0258670 MtrunA17_Chr4g0043381 33.624 229 146 5 134 359 839 1064 1.79e-31 129
Msa0258670 MtrunA17_Chr2g0289231 34.855 241 136 9 120 347 285 517 7.18e-30 123
Msa0258670 MtrunA17_Chr3g0129971 34.629 283 170 6 116 390 282 557 4.38e-28 119
Msa0258670 MtrunA17_Chr3g0135781 39.877 163 92 5 131 291 54 212 7.48e-28 111
Msa0258670 MtrunA17_Chr8g0388371 31.321 265 163 8 132 381 404 664 4.31e-27 116
Msa0258670 MtrunA17_Chr5g0432641 32.273 220 140 7 131 346 190 404 3.99e-25 109
Msa0258670 MtrunA17_Chr8g0357301 31.944 216 129 7 159 362 497 706 6.69e-20 94.0
Msa0258670 MtrunA17_Chr4g0047411 30.769 208 126 7 157 347 200 406 1.13e-19 92.8
Msa0258670 MtrunA17_Chr1g0168321 38.776 147 78 6 208 345 203 346 6.11e-19 90.1
Msa0258670 MtrunA17_Chr1g0190401 30.806 211 132 8 108 311 657 860 5.54e-18 88.2
Msa0258670 MtrunA17_Chr3g0116941 34.161 161 88 4 169 312 197 356 5.93e-17 83.6
Msa0258670 MtrunA17_Chr5g0404291 26.641 259 163 5 114 349 334 588 1.04e-16 83.6
Msa0258670 MtrunA17_Chr4g0039781 27.404 208 122 5 167 349 368 571 2.37e-14 75.9
Msa0258670 MtrunA17_Chr6g0450161 27.053 207 123 5 167 349 362 564 3.17e-14 75.5
Msa0258670 MtrunA17_Chr4g0062081 40.506 79 45 2 135 211 10 88 6.91e-12 62.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0258670 AT2G27600.1 90.389 437 39 1 1 437 1 434 0.0 806
Msa0258670 AT1G80350.1 41.504 359 175 6 86 435 189 521 7.26e-88 281
Msa0258670 AT2G34560.2 42.042 333 165 6 110 440 87 393 2.00e-83 265
Msa0258670 AT2G45500.4 41.737 357 171 5 80 435 32 352 2.06e-83 263
Msa0258670 AT2G45500.3 41.737 357 171 5 80 435 32 352 2.06e-83 263
Msa0258670 AT2G34560.1 42.042 333 165 6 110 440 78 384 2.17e-83 265
Msa0258670 AT2G45500.2 41.737 357 171 5 80 435 165 485 1.07e-81 263
Msa0258670 AT2G45500.5 41.737 357 171 5 80 435 175 495 1.07e-81 264
Msa0258670 AT2G45500.1 41.737 357 171 5 80 435 169 489 1.24e-81 263
Msa0258670 AT3G27120.1 39.583 336 169 4 106 435 369 676 5.85e-71 240
Msa0258670 AT1G08270.1 75.758 132 22 1 33 164 1 122 1.35e-59 193
Msa0258670 AT1G08270.2 74.242 132 24 1 33 164 1 122 3.48e-58 190
Msa0258670 AT1G50140.3 47.826 230 112 5 132 356 711 937 5.78e-58 209
Msa0258670 AT1G50140.1 47.826 230 112 5 132 356 711 937 5.78e-58 209
Msa0258670 AT1G50140.4 47.826 230 112 5 132 356 711 937 5.78e-58 209
Msa0258670 AT1G50140.2 47.826 230 112 5 132 356 689 915 6.57e-58 208
Msa0258670 AT1G50140.5 47.826 230 112 5 132 356 689 915 6.57e-58 208
Msa0258670 AT3G19740.1 47.162 229 115 4 132 356 701 927 3.32e-57 206
Msa0258670 AT1G64110.2 44.635 233 122 4 128 356 514 743 1.01e-55 201
Msa0258670 AT1G64110.4 44.635 233 122 4 128 356 514 743 1.01e-55 201
Msa0258670 AT1G64110.1 44.635 233 122 4 128 356 509 738 1.04e-55 201
Msa0258670 AT1G64110.5 44.635 233 122 4 128 356 512 741 1.09e-55 201
Msa0258670 AT1G64110.3 44.635 233 122 4 128 356 512 741 1.09e-55 201
Msa0258670 AT4G28000.3 43.860 228 122 4 132 356 517 741 8.79e-55 198
Msa0258670 AT4G28000.1 43.860 228 122 4 132 356 515 739 1.25e-54 197
Msa0258670 AT4G28000.2 43.860 228 122 4 132 356 517 741 1.45e-54 197
Msa0258670 AT5G52882.1 43.860 228 122 4 132 356 514 738 2.49e-53 194
Msa0258670 AT5G53540.1 38.356 292 143 8 131 418 83 341 2.13e-52 184
Msa0258670 AT4G02480.1 44.105 229 122 5 132 356 960 1186 5.14e-52 192
Msa0258670 AT4G24860.4 43.966 232 121 5 121 346 779 1007 2.04e-51 190
Msa0258670 AT4G24860.2 43.966 232 121 5 121 346 802 1030 2.28e-51 190
Msa0258670 AT4G24860.3 43.966 232 121 5 121 346 804 1032 2.28e-51 190
Msa0258670 AT4G24860.1 43.966 232 121 5 121 346 806 1034 2.47e-51 189
Msa0258670 AT1G02890.1 44.156 231 119 7 132 356 941 1167 5.92e-51 189
Msa0258670 AT4G27680.1 38.014 292 144 8 131 418 80 338 1.28e-50 179
Msa0258670 AT3G53230.1 43.363 226 120 6 126 345 472 695 1.23e-48 181
Msa0258670 AT3G53230.1 37.179 234 139 6 132 361 205 434 4.28e-40 155
Msa0258670 AT5G03340.1 42.920 226 121 6 126 345 471 694 1.39e-48 180
Msa0258670 AT5G03340.1 37.179 234 139 6 132 361 204 433 3.70e-40 155
Msa0258670 AT3G09840.1 42.731 227 121 6 126 345 471 695 2.70e-46 174
Msa0258670 AT3G09840.1 37.021 235 140 6 131 361 203 433 2.02e-40 156
Msa0258670 AT3G56690.1 41.700 247 132 7 110 348 697 939 3.68e-44 168
Msa0258670 AT3G56690.1 36.224 196 121 3 166 359 416 609 2.39e-33 135
Msa0258670 AT5G43010.1 38.683 243 137 10 125 359 128 366 6.80e-44 160
Msa0258670 AT1G45000.1 38.776 245 134 11 125 359 128 366 4.35e-43 158
Msa0258670 AT5G19990.2 39.167 240 133 8 121 351 89 324 2.89e-42 155
Msa0258670 AT2G03670.1 42.060 233 117 6 121 342 272 497 4.21e-42 159
Msa0258670 AT2G03670.1 31.707 246 151 8 131 363 15 256 7.90e-28 118
Msa0258670 AT5G20000.1 39.167 240 133 8 121 351 147 382 9.19e-42 155
Msa0258670 AT5G19990.1 39.167 240 133 8 121 351 147 382 1.08e-41 155
Msa0258670 AT5G19990.3 39.167 240 133 8 121 351 147 382 1.08e-41 155
Msa0258670 AT1G06430.1 40.711 253 138 8 117 361 200 448 1.75e-41 159
Msa0258670 AT1G06430.3 40.711 253 138 8 117 361 200 448 1.75e-41 159
Msa0258670 AT1G06430.2 40.711 253 138 8 117 361 200 448 1.75e-41 159
Msa0258670 AT2G30950.1 39.921 253 140 8 117 361 207 455 3.98e-41 158
Msa0258670 AT2G30950.2 39.921 253 140 8 117 361 207 455 3.98e-41 158
Msa0258670 AT2G30950.3 39.921 253 140 8 117 361 207 455 3.98e-41 158
Msa0258670 AT2G30950.4 39.921 253 140 8 117 361 211 459 4.21e-41 158
Msa0258670 AT5G58290.1 37.553 237 139 6 128 358 148 381 1.51e-40 152
Msa0258670 AT1G53750.1 37.903 248 134 9 112 347 145 384 1.78e-40 152
Msa0258670 AT3G05530.1 37.991 229 132 7 126 347 162 387 2.83e-40 151
Msa0258670 AT3G02450.1 38.430 242 134 8 128 361 327 561 1.08e-39 153
Msa0258670 AT1G09100.1 37.719 228 134 6 126 347 161 386 1.21e-39 149
Msa0258670 AT4G29040.1 34.328 268 152 9 126 372 179 443 1.58e-38 147
Msa0258670 AT2G20140.1 34.328 268 152 9 126 372 179 443 2.27e-38 146
Msa0258670 AT1G03000.1 35.622 233 142 5 130 356 653 883 3.84e-38 150
Msa0258670 AT1G62130.2 38.182 220 117 7 132 346 743 948 5.35e-38 150
Msa0258670 AT1G62130.1 38.182 220 117 7 132 346 750 955 6.76e-38 149
Msa0258670 AT1G07510.1 40.984 244 130 8 118 351 310 549 1.73e-37 148
Msa0258670 AT5G42270.1 40.260 231 128 7 132 356 247 473 3.90e-37 146
Msa0258670 AT1G53780.1 36.290 248 138 9 112 347 317 556 6.16e-37 145
Msa0258670 AT1G53780.4 36.290 248 138 9 112 347 317 556 6.16e-37 145
Msa0258670 AT1G53780.3 35.918 245 143 8 112 347 316 555 6.28e-37 145
Msa0258670 AT1G53780.2 36.290 248 138 9 112 347 338 577 7.16e-37 145
Msa0258670 AT5G15250.1 36.508 252 144 9 120 361 207 452 7.45e-37 145
Msa0258670 AT1G50250.1 38.983 236 124 8 132 356 259 485 1.14e-35 142
Msa0258670 AT2G29080.1 41.949 236 126 8 118 345 305 537 1.46e-35 142
Msa0258670 AT1G02890.2 37.229 231 107 8 132 356 941 1139 1.07e-34 140
Msa0258670 AT5G53170.1 38.793 232 128 8 121 346 348 571 4.81e-34 137
Msa0258670 AT3G15120.2 34.802 227 137 6 134 351 728 952 5.13e-34 138
Msa0258670 AT3G15120.1 34.802 227 137 6 134 351 718 942 5.36e-34 138
Msa0258670 AT2G26140.1 36.364 220 131 7 131 346 223 437 1.34e-33 136
Msa0258670 AT3G47060.1 34.296 277 147 6 91 358 303 553 2.46e-33 135
Msa0258670 AT5G15250.2 33.818 275 143 10 120 361 207 475 2.82e-33 133
Msa0258670 AT3G16290.1 39.474 228 118 7 131 347 406 624 5.14e-33 134
Msa0258670 AT5G58870.1 37.179 234 140 5 131 358 325 557 1.38e-32 133
Msa0258670 AT1G05910.1 35.841 226 134 6 131 347 377 600 3.78e-32 132
Msa0258670 AT3G01610.1 36.957 230 135 7 130 354 523 747 2.00e-31 129
Msa0258670 AT3G01610.1 36.607 224 122 6 134 342 232 450 1.60e-30 127
Msa0258670 AT3G01610.2 36.957 230 135 7 130 354 523 747 2.89e-31 129
Msa0258670 AT3G01610.2 36.607 224 122 6 134 342 232 450 1.83e-30 127
Msa0258670 AT5G08470.1 31.449 283 169 8 134 411 843 1105 2.29e-30 127
Msa0258670 AT5G08470.3 31.449 283 169 8 134 411 834 1096 2.39e-30 127
Msa0258670 AT4G04180.2 34.956 226 128 8 132 345 311 529 5.25e-29 121
Msa0258670 AT4G04180.1 34.956 226 128 8 132 345 316 534 5.29e-29 121
Msa0258670 AT2G03670.2 31.707 246 151 8 131 363 15 256 2.06e-28 118
Msa0258670 AT2G03670.2 43.333 150 81 2 121 266 272 421 4.82e-26 111
Msa0258670 AT5G64580.1 34.783 253 155 4 115 359 298 548 7.04e-28 119
Msa0258670 AT1G45000.2 40.000 145 83 4 125 265 128 272 6.83e-27 112
Msa0258670 AT4G23940.1 33.061 245 146 7 132 362 427 667 9.45e-27 115
Msa0258670 AT1G79560.3 35.437 206 115 7 169 362 527 726 1.34e-23 105
Msa0258670 AT1G79560.2 35.437 206 115 7 169 362 527 726 1.34e-23 105
Msa0258670 AT1G79560.1 35.437 206 115 7 169 362 527 726 1.52e-23 105
Msa0258670 AT5G08470.2 37.584 149 86 4 134 279 843 987 4.73e-22 101
Msa0258670 AT4G04910.1 30.952 210 123 8 157 347 237 443 1.07e-18 90.5
Msa0258670 AT3G04340.1 31.746 189 119 7 130 311 779 964 6.97e-17 85.1
Msa0258670 AT4G24710.3 32.298 161 91 4 169 312 215 374 1.25e-15 80.1
Msa0258670 AT4G24710.1 32.298 161 91 4 169 312 203 362 1.27e-15 79.7
Msa0258670 AT4G36580.1 27.488 211 121 5 167 349 381 587 4.00e-14 75.9
Msa0258670 AT2G18330.1 27.103 214 121 5 167 349 384 593 7.22e-14 74.7
Msa0258670 AT3G03060.1 27.404 208 122 5 167 349 385 588 8.89e-14 74.7
Msa0258670 AT5G16930.1 26.923 208 123 5 167 349 397 600 1.57e-13 73.9

Find 147 sgRNAs with CRISPR-Local

Find 383 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGTTGAATTCTGCGATTATT+AGG 0.186943 2_2:+55150460 Msa0258670:CDS
CTGCAAGAACAAGAACTTTC+TGG 0.202134 2_2:-55153883 None:intergenic
AAAAGGGAAACCCTAGAAAT+TGG 0.216790 2_2:-55150009 None:intergenic
CACCATCTTCCCCAATTTCT+AGG 0.226084 2_2:+55149998 Msa0258670:five_prime_UTR
GATTCAAATATACACAATTT+AGG 0.234814 2_2:-55154992 None:intergenic
AAGGATGGTGGTGGGGAGGG+TGG 0.244754 2_2:+55150390 Msa0258670:CDS
GGTGGGGAGGGTGGTGGAGG+TGG 0.245687 2_2:+55150399 Msa0258670:CDS
GATGGTGGTGGGGAGGGTGG+TGG 0.246166 2_2:+55150393 Msa0258670:CDS
TCAAAATCTGTTCTTGTAAT+GGG 0.258427 2_2:-55154698 None:intergenic
TCCCCGAAAATAACATAAAA+AGG 0.262830 2_2:-55154908 None:intergenic
GGTGGTGGGGAGGGTGGTGG+AGG 0.266118 2_2:+55150396 Msa0258670:CDS
GTGCTTGATGACGGTGGGCC+AGG 0.284572 2_2:+55150315 Msa0258670:CDS
TTTCTCGAGCCATTTGAAAA+AGG 0.305402 2_2:-55152709 None:intergenic
TTCAAAATCTGTTCTTGTAA+TGG 0.305475 2_2:-55154699 None:intergenic
TGGTGATCTGATCGGGAATA+AGG 0.308359 2_2:-55149974 None:intergenic
GAGAGATTCACAAAGGAGTT+TGG 0.323238 2_2:+55154776 Msa0258670:CDS
GGCCCGCCAACACATGTTTA+AGG 0.326809 2_2:+55154068 Msa0258670:CDS
GTTGAATTCTGCGATTATTA+GGG 0.328089 2_2:+55150461 Msa0258670:CDS
TCTAAAGCGTTCATGTATAA+AGG 0.341061 2_2:-55150189 None:intergenic
GAGTGCTAAACAGGCTTTGC+AGG 0.354509 2_2:+55150524 Msa0258670:CDS
GGGGAAGGATGGTGGTGGGG+AGG 0.359432 2_2:+55150386 Msa0258670:CDS
ATTTGTATTTGCAGGCAATA+AGG 0.365094 2_2:+55154001 Msa0258670:intron
AAAGGGAAACCCTAGAAATT+GGG 0.373360 2_2:-55150008 None:intergenic
GGGAATAAGGGAGGAAGAAA+AGG 0.375046 2_2:-55149961 None:intergenic
AAAGAAGAACATAGCATCTT+GGG 0.376196 2_2:-55154418 None:intergenic
TACGTCGTGCTGAGGAGATC+AGG 0.383073 2_2:+55150289 Msa0258670:CDS
TAAAGAAGAACATAGCATCT+TGG 0.387294 2_2:-55154419 None:intergenic
TATTCCACTACCAGATTTGA+AGG 0.389227 2_2:+55154047 Msa0258670:CDS
TAAGGGGAAGGATGGTGGTG+GGG 0.390562 2_2:+55150383 Msa0258670:CDS
TCCTCATAATTTAACTGAAA+AGG 0.391490 2_2:+55154216 Msa0258670:CDS
TAAATCAACCTCCGCACAAT+CGG 0.391564 2_2:-55154941 None:intergenic
GGGAAGGATGGTGGTGGGGA+GGG 0.396231 2_2:+55150387 Msa0258670:CDS
TTGTATGGACCTCCTGGAAC+TGG 0.396491 2_2:+55151854 Msa0258670:CDS
CCCTGTTGCTTTGGTCCACA+TGG 0.396687 2_2:-55154465 None:intergenic
CCCATGTGGACCAAAGCAAC+AGG 0.401299 2_2:+55154464 Msa0258670:CDS
TGAATCTCTCATGAACTTCA+AGG 0.403290 2_2:-55154763 None:intergenic
TGGGTTGGAGAGTGCTAAAC+AGG 0.403615 2_2:+55150515 Msa0258670:CDS
TGAACTGCGCCCTGTTGCTT+TGG 0.404749 2_2:-55154474 None:intergenic
TCCGGCATTGTCTTCGTGTA+CGG 0.414643 2_2:-55150148 None:intergenic
ATTCATTAAAGATGCTGGTT+AGG 0.417064 2_2:+55155180 Msa0258670:CDS
GAGGGTGGTGGAGGTGGTGA+AGG 0.417655 2_2:+55150405 Msa0258670:CDS
TGTTGGCGGGCCTTCAAATC+TGG 0.417810 2_2:-55154057 None:intergenic
CTTCTCCACGCTGGCCACAT+AGG 0.417992 2_2:-55152769 None:intergenic
AGTAAGGGGAAGGATGGTGG+TGG 0.426631 2_2:+55150381 Msa0258670:CDS
ACGAATCAAAACAGAACTTC+TGG 0.429142 2_2:+55152814 Msa0258670:CDS
ACAAAGGAGTTTGGAGAAGA+AGG 0.429561 2_2:+55154785 Msa0258670:CDS
AACGATGTATAGCAATTTCA+AGG 0.438031 2_2:+55150098 Msa0258670:exon
GAGGAAGAAAAGGGGAAAGA+TGG 0.445165 2_2:-55149951 None:intergenic
GCTCTAAGCTTCGCCTGCTC+CGG 0.446126 2_2:-55150435 None:intergenic
ACATCATTCCACTTAACATT+CGG 0.446378 2_2:-55150489 None:intergenic
GGTGATCTGATCGGGAATAA+GGG 0.448114 2_2:-55149973 None:intergenic
GGGCCAGGGCCAGCTTCTAA+TGG 0.448570 2_2:+55150330 Msa0258670:CDS
TTCATCAACAAATATGATAG+AGG 0.451811 2_2:-55152738 None:intergenic
GGAATAAGGGAGGAAGAAAA+GGG 0.456910 2_2:-55149960 None:intergenic
CCATCCTTCCCCTTACTCTT+CGG 0.459708 2_2:-55150375 None:intergenic
TGCTACGAGGCCGAAGAGTA+AGG 0.461247 2_2:+55150365 Msa0258670:CDS
ACTGAATTCATTAAAGATGC+TGG 0.463463 2_2:+55155175 Msa0258670:CDS
GTGGAATGATGTTGCTGGGT+TGG 0.467137 2_2:+55150500 Msa0258670:CDS
TCGCCATTAGAAGCTGGCCC+TGG 0.467828 2_2:-55150333 None:intergenic
TAAATTGAGCAGGTGCATCT+TGG 0.468085 2_2:+55154187 Msa0258670:intron
AGATCTTGTTTCAAAGTGGA+TGG 0.468719 2_2:+55152661 Msa0258670:CDS
TTAAGAGTCCTGAGGGTATG+TGG 0.469882 2_2:+55154439 Msa0258670:CDS
GTTAAGTGGAATGATGTTGC+TGG 0.471480 2_2:+55150495 Msa0258670:CDS
CTTACCTGGTCTAAAGCATA+AGG 0.474963 2_2:-55153917 None:intergenic
TGAAAAGGATTATGAATACT+TGG 0.477851 2_2:+55154231 Msa0258670:CDS
GTAAGGGGAAGGATGGTGGT+GGG 0.478141 2_2:+55150382 Msa0258670:CDS
TGCCTTAAACATGTGTTGGC+GGG 0.478809 2_2:-55154070 None:intergenic
GTCATGGTGGTTGCTTATGT+TGG 0.479616 2_2:+55155040 Msa0258670:CDS
ATTATGAATACTTGGCTAGC+AGG 0.480856 2_2:+55154239 Msa0258670:CDS
TTGCCTTAAACATGTGTTGG+CGG 0.483730 2_2:-55154071 None:intergenic
TTCTTCTTTAAGAGTCCTGA+GGG 0.484201 2_2:+55154432 Msa0258670:CDS
AGAACTTCTGGTGCAGATGC+AGG 0.485421 2_2:+55152826 Msa0258670:CDS
ATGACGGATCTTGCTACAAA+AGG 0.487123 2_2:+55154504 Msa0258670:CDS
TGGTGGAGGTGGTGAAGGAG+AGG 0.488082 2_2:+55150410 Msa0258670:CDS
CCCTTGCCTTAAACATGTGT+TGG 0.488382 2_2:-55154074 None:intergenic
ACCATCTTCCCCAATTTCTA+GGG 0.488630 2_2:+55149999 Msa0258670:five_prime_UTR
AGGTGGTGAAGGAGAGGATC+CGG 0.491616 2_2:+55150416 Msa0258670:CDS
TGCTTGATGACGGTGGGCCA+GGG 0.491756 2_2:+55150316 Msa0258670:CDS
ACCCTAGAAATTGGGGAAGA+TGG 0.492721 2_2:-55150000 None:intergenic
TTCTCCACGCTGGCCACATA+GGG 0.495975 2_2:-55152768 None:intergenic
CATCAGATCTTGTTTCAAAG+TGG 0.499401 2_2:+55152657 Msa0258670:CDS
AGAAAAGGGGAAAGATGGAT+TGG 0.499472 2_2:-55149946 None:intergenic
CAAAATCTGTTCTTGTAATG+GGG 0.501472 2_2:-55154697 None:intergenic
AGCCTCAGTTGCAACTGCCT+TGG 0.502214 2_2:-55151891 None:intergenic
CTATGTGGCCAGCGTGGAGA+AGG 0.514378 2_2:+55152770 Msa0258670:CDS
AAAAGGTTCTTGCTAGGCAA+AGG 0.518856 2_2:+55154720 Msa0258670:CDS
TACAAAAGGACTTGCTTCAA+AGG 0.521759 2_2:+55154518 Msa0258670:CDS
GAGCAGGCGAAGCTTAGAGC+GGG 0.525277 2_2:+55150438 Msa0258670:CDS
TCATCAACAAATATGATAGA+GGG 0.526931 2_2:-55152737 None:intergenic
AAATCAACCTCCGCACAATC+GGG 0.529888 2_2:-55154940 None:intergenic
GCGGCATCGCCATTAGAAGC+TGG 0.534830 2_2:-55150339 None:intergenic
ATGGTGGTGGTGATCTGATC+GGG 0.537326 2_2:-55149981 None:intergenic
GGGAAAAGCCGAATGTTAAG+TGG 0.537432 2_2:+55150481 Msa0258670:CDS
CGGGCCTTCAAATCTGGTAG+TGG 0.539272 2_2:-55154051 None:intergenic
AAAATCTGTTCTTGTAATGG+GGG 0.541123 2_2:-55154696 None:intergenic
TGAAGGAGAGGATCCGGAGC+AGG 0.541483 2_2:+55150422 Msa0258670:CDS
AGCTTCTAATGGCGATGCCG+CGG 0.546566 2_2:+55150341 Msa0258670:CDS
CCGAAGAGTAAGGGGAAGGA+TGG 0.547863 2_2:+55150375 Msa0258670:CDS
GCTACGAGGCCGAAGAGTAA+GGG 0.547998 2_2:+55150366 Msa0258670:CDS
CGGAGGTTGATTTATTACGA+TGG 0.548713 2_2:+55154950 Msa0258670:CDS
TACTTGGCTAGCAGGACAGA+GGG 0.548985 2_2:+55154247 Msa0258670:CDS
CCTGTTGCTTTGGTCCACAT+GGG 0.563250 2_2:-55154464 None:intergenic
CGCAGTTCAAACTACAATGA+CGG 0.571283 2_2:+55154488 Msa0258670:CDS
GTTCTTCTTTAAGAGTCCTG+AGG 0.572301 2_2:+55154431 Msa0258670:CDS
TGGAAAATCATATTTAGCCA+AGG 0.574973 2_2:+55151874 Msa0258670:CDS
GATCTTGTTTCAAAGTGGAT+GGG 0.577099 2_2:+55152662 Msa0258670:CDS
GATGGTGGTGGTGATCTGAT+CGG 0.578672 2_2:-55149982 None:intergenic
AAGGGAAACCCTAGAAATTG+GGG 0.579108 2_2:-55150007 None:intergenic
CACACCTTATGCTTTAGACC+AGG 0.580873 2_2:+55153913 Msa0258670:CDS
AGCCAAGGCAGTTGCAACTG+AGG 0.584896 2_2:+55151889 Msa0258670:CDS
AGGGCTGTGCTTGATGACGG+TGG 0.587321 2_2:+55150309 Msa0258670:CDS
ACGTCGTGCTGAGGAGATCA+GGG 0.588419 2_2:+55150290 Msa0258670:CDS
CTCAGCACGACGTAAATACT+CGG 0.590884 2_2:-55150280 None:intergenic
AAGAGTAAGGGGAAGGATGG+TGG 0.591605 2_2:+55150378 Msa0258670:CDS
ATCAGGGCTGTGCTTGATGA+CGG 0.592760 2_2:+55150306 Msa0258670:CDS
TCTCATTGCCTTCTCCACGC+TGG 0.597326 2_2:-55152778 None:intergenic
GCCGTACACGAAGACAATGC+CGG 0.598847 2_2:+55150147 Msa0258670:CDS
CGAGTATTTACGTCGTGCTG+AGG 0.603573 2_2:+55150281 Msa0258670:CDS
CATGGGATCCACATACCCTC+AGG 0.604619 2_2:-55154447 None:intergenic
TTAAGTGGAATGATGTTGCT+GGG 0.607930 2_2:+55150496 Msa0258670:CDS
GGGCTGTGCTTGATGACGGT+GGG 0.609283 2_2:+55150310 Msa0258670:CDS
CTACGAGGCCGAAGAGTAAG+GGG 0.613832 2_2:+55150367 Msa0258670:CDS
ATGTGAAGTTCCCGATTGTG+CGG 0.613924 2_2:+55154930 Msa0258670:CDS
CCACTCATATTGTAGGGTGT+AGG 0.618221 2_2:+55153851 Msa0258670:intron
GCGATGCCGCGGTTGCTACG+AGG 0.619805 2_2:+55150352 Msa0258670:CDS
AAATCTGTTCTTGTAATGGG+GGG 0.629544 2_2:-55154695 None:intergenic
GAAATTGGGGAAGATGGTGG+TGG 0.634910 2_2:-55149994 None:intergenic
TAGAAAACTAACTTGTGTCA+TGG 0.636740 2_2:+55155024 Msa0258670:CDS
CATCAACAAATATGATAGAG+GGG 0.637776 2_2:-55152736 None:intergenic
TGAAGTTCCCGATTGTGCGG+AGG 0.638548 2_2:+55154933 Msa0258670:CDS
GATGAAATAGATTCCCTATG+TGG 0.643720 2_2:+55152755 Msa0258670:CDS
CTAGAAATTGGGGAAGATGG+TGG 0.644288 2_2:-55149997 None:intergenic
GAATAAGGGAGGAAGAAAAG+GGG 0.646338 2_2:-55149959 None:intergenic
GAGGCCGAAGAGTAAGGGGA+AGG 0.649712 2_2:+55150371 Msa0258670:CDS
ATCAACAAATATGATAGAGG+GGG 0.666172 2_2:-55152735 None:intergenic
GAGGGTATGTGGATCCCATG+TGG 0.666781 2_2:+55154450 Msa0258670:CDS
GGAGCAGGCGAAGCTTAGAG+CGG 0.673581 2_2:+55150437 Msa0258670:CDS
CCATGTGGACCAAAGCAACA+GGG 0.676849 2_2:+55154465 Msa0258670:CDS
AGCAGGCGAAGCTTAGAGCG+GGG 0.677406 2_2:+55150439 Msa0258670:CDS
ATACTTGGCTAGCAGGACAG+AGG 0.680894 2_2:+55154246 Msa0258670:CDS
GATTCCCTATGTGGCCAGCG+TGG 0.682011 2_2:+55152764 Msa0258670:CDS
CTTCGGCCTCGTAGCAACCG+CGG 0.685179 2_2:-55150358 None:intergenic
GATCTGATCGGGAATAAGGG+AGG 0.699636 2_2:-55149970 None:intergenic
AGTTCATGAGAGATTCACAA+AGG 0.699715 2_2:+55154769 Msa0258670:CDS
TTTCAGGTAAAAGACGACCA+TGG 0.700290 2_2:+55151819 Msa0258670:intron
ACTTGGCTAGCAGGACAGAG+GGG 0.708147 2_2:+55154248 Msa0258670:CDS
AAAACTAACTTGTGTCATGG+TGG 0.713532 2_2:+55155027 Msa0258670:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATAACAATAAAATTC+AGG - chr2_2:55154121-55154140 None:intergenic 10.0%
!! TATGAAAAATTGAAAATTGA+GGG - chr2_2:55150054-55150073 None:intergenic 15.0%
!!! TCATTTTCTTAAATTATTAC+TGG - chr2_2:55150944-55150963 None:intergenic 15.0%
!! AATTTAAGAAAATGATTTAC+CGG + chr2_2:55150949-55150968 Msa0258670:intron 15.0%
!!! TTGTATTTTATTTAGGTTTT+TGG - chr2_2:55152198-55152217 None:intergenic 15.0%
!! AATAATATAGTAATTTCCAT+AGG - chr2_2:55152237-55152256 None:intergenic 15.0%
!! ATAGGTAAAAAAATGATATA+GGG - chr2_2:55152299-55152318 None:intergenic 15.0%
!! TATAGGTAAAAAAATGATAT+AGG - chr2_2:55152300-55152319 None:intergenic 15.0%
!! TCTTTATCTTATCAATATAT+AGG - chr2_2:55152317-55152336 None:intergenic 15.0%
!! TGGAAATATTCAATAAATAA+AGG - chr2_2:55152964-55152983 None:intergenic 15.0%
!!! TTTTTTTTACAGAAATGATT+TGG - chr2_2:55152984-55153003 None:intergenic 15.0%
!!! TTTTTTTTTTATGTGTGATT+TGG - chr2_2:55153011-55153030 None:intergenic 15.0%
!! AAATAAAGAGAAATACAAAA+AGG - chr2_2:55153819-55153838 None:intergenic 15.0%
!! GTATGAAAAATTGAAAATTG+AGG - chr2_2:55150055-55150074 None:intergenic 20.0%
!!! GTTTTTTTCGTACTTTAAAT+GGG - chr2_2:55150226-55150245 None:intergenic 20.0%
!!! GTTGTTTTTATATGATATCA+TGG + chr2_2:55150701-55150720 Msa0258670:intron 20.0%
!! AATAAGCTGAAAACAATTTA+TGG + chr2_2:55150736-55150755 Msa0258670:intron 20.0%
!! ATAAGCTGAAAACAATTTAT+GGG + chr2_2:55150737-55150756 Msa0258670:intron 20.0%
!! ATACAAAATTGCAAATCTTA+AGG + chr2_2:55151476-55151495 Msa0258670:intron 20.0%
!! TACAAAATTGCAAATCTTAA+GGG + chr2_2:55151477-55151496 Msa0258670:intron 20.0%
!! AACTTTAATGATATATTGAC+AGG + chr2_2:55151721-55151740 Msa0258670:intron 20.0%
!! AAATTGTTCTATTGTTTACA+TGG + chr2_2:55151934-55151953 Msa0258670:intron 20.0%
!! GTTAAAGAAATTTCTACATT+AGG + chr2_2:55151976-55151995 Msa0258670:intron 20.0%
!! AATTCTACTTAAATACCAAA+TGG - chr2_2:55152148-55152167 None:intergenic 20.0%
!!! TAGGACTTTGTATTTTATTT+AGG - chr2_2:55152205-55152224 None:intergenic 20.0%
!! AAAAAAATGATATAGGGTAA+AGG - chr2_2:55152293-55152312 None:intergenic 20.0%
!! TTGATAAGATAAAGATGAAA+AGG + chr2_2:55152322-55152341 Msa0258670:intron 20.0%
!! TGATAAGATAAAGATGAAAA+GGG + chr2_2:55152323-55152342 Msa0258670:intron 20.0%
!! TTTCTGTATTGTTATGAATT+AGG + chr2_2:55152572-55152591 Msa0258670:intron 20.0%
!!! CAAAAGTTAAAAATGCTTTT+AGG - chr2_2:55152616-55152635 None:intergenic 20.0%
!!! TTTTTAAATGTAGTTTTCCT+TGG + chr2_2:55153104-55153123 Msa0258670:intron 20.0%
!!! AATGCTTCAATTTTTTATGT+TGG + chr2_2:55153216-55153235 Msa0258670:intron 20.0%
!!! TTTTTGTAGGCATTTTTTTA+GGG - chr2_2:55153408-55153427 None:intergenic 20.0%
!!! AAAAATATCGTTTAAAACGA+AGG - chr2_2:55153440-55153459 None:intergenic 20.0%
!! TTGCTTCTTATTAGTATATT+GGG + chr2_2:55153544-55153563 Msa0258670:intron 20.0%
!! AGAACATAAACAAAAAATGT+TGG - chr2_2:55153796-55153815 None:intergenic 20.0%
!! TTATATATAAACCTAGCAAA+TGG + chr2_2:55154132-55154151 Msa0258670:intron 20.0%
!!! AACGTGTCATTTTATTTTTT+TGG + chr2_2:55154159-55154178 Msa0258670:intron 20.0%
!!! AAAAACTTTTTAATCTCTTC+AGG + chr2_2:55154362-55154381 Msa0258670:intron 20.0%
!!! TGGTTGTATTTTTTTGAAAT+TGG + chr2_2:55154572-55154591 Msa0258670:intron 20.0%
!!! TTTTTTGAAATTGGAGAAAT+AGG + chr2_2:55154581-55154600 Msa0258670:intron 20.0%
!!! TTTTTGAAATTGGAGAAATA+GGG + chr2_2:55154582-55154601 Msa0258670:intron 20.0%
!!! AATTATAACACATCTAAAAC+TGG - chr2_2:55154851-55154870 None:intergenic 20.0%
!!! CATCCTTTTTATGTTATTTT+CGG + chr2_2:55154905-55154924 Msa0258670:CDS 20.0%
!!! ATCCTTTTTATGTTATTTTC+GGG + chr2_2:55154906-55154925 Msa0258670:CDS 20.0%
!! GATTCAAATATACACAATTT+AGG - chr2_2:55154995-55155014 None:intergenic 20.0%
!! TTTCATCTTGTAAAAAAAGA+TGG + chr2_2:55155098-55155117 Msa0258670:CDS 20.0%
! ATTTGTGTGTGAAGAAAAAA+GGG - chr2_2:55150028-55150047 None:intergenic 25.0%
!!! GGTTTTTTTCGTACTTTAAA+TGG - chr2_2:55150227-55150246 None:intergenic 25.0%
!! TAATTGCTTCTCTGATTTTA+GGG - chr2_2:55150248-55150267 None:intergenic 25.0%
!!! AAGTTTCCTCAATTTTTTAC+TGG + chr2_2:55150567-55150586 Msa0258670:CDS 25.0%
!! TTTGTTGTCTTCTCAATATT+AGG + chr2_2:55151236-55151255 Msa0258670:intron 25.0%
! ATTATGCATAAAGAACTAGA+AGG + chr2_2:55151304-55151323 Msa0258670:intron 25.0%
! AAATCAATATGATCAATCCT+TGG - chr2_2:55151379-55151398 None:intergenic 25.0%
!!! AGGATTGATCATATTGATTT+TGG + chr2_2:55151379-55151398 Msa0258670:intron 25.0%
!! ACAATTTTACCTGAAAAATG+TGG - chr2_2:55151921-55151940 None:intergenic 25.0%
! AATGAAATCATATTCTCAAG+TGG + chr2_2:55152029-55152048 Msa0258670:intron 25.0%
!!! TTATTTAGGTTTTTGGCATT+TGG - chr2_2:55152191-55152210 None:intergenic 25.0%
! AAAATGAACATGATGTATCT+TGG + chr2_2:55152348-55152367 Msa0258670:intron 25.0%
!!! TTTTTTTGACGAATAAAGCA+TGG - chr2_2:55152507-55152526 None:intergenic 25.0%
! TCATCAACAAATATGATAGA+GGG - chr2_2:55152740-55152759 None:intergenic 25.0%
! TTCATCAACAAATATGATAG+AGG - chr2_2:55152741-55152760 None:intergenic 25.0%
! AACATTGTAATCAGTTTAGT+TGG + chr2_2:55152879-55152898 Msa0258670:intron 25.0%
! CAGTTATATAGTGTAATATG+TGG + chr2_2:55152936-55152955 Msa0258670:intron 25.0%
! AGCATTAATTACGAATTAAC+AGG - chr2_2:55153202-55153221 None:intergenic 25.0%
!!! GTTTTTGTAGGCATTTTTTT+AGG - chr2_2:55153409-55153428 None:intergenic 25.0%
! CAATATACTAATAAGAAGCA+AGG - chr2_2:55153545-55153564 None:intergenic 25.0%
! CTTGCTTCTTATTAGTATAT+TGG + chr2_2:55153543-55153562 Msa0258670:intron 25.0%
! AATGATGTAAATATTAGCGA+TGG - chr2_2:55153684-55153703 None:intergenic 25.0%
! ATCGCTAATATTTACATCAT+TGG + chr2_2:55153683-55153702 Msa0258670:intron 25.0%
!!! AGAATTATTTTTGTCTTACC+TGG - chr2_2:55153934-55153953 None:intergenic 25.0%
! TCTAATCAATTTGTATTTGC+AGG + chr2_2:55153993-55154012 Msa0258670:intron 25.0%
! TCCTCATAATTTAACTGAAA+AGG + chr2_2:55154216-55154235 Msa0258670:CDS 25.0%
!! TCCTTTTCAGTTAAATTATG+AGG - chr2_2:55154220-55154239 None:intergenic 25.0%
! TGAAAAGGATTATGAATACT+TGG + chr2_2:55154231-55154250 Msa0258670:CDS 25.0%
! AAGAAATTCATCCAAGTAAA+AGG - chr2_2:55154340-55154359 None:intergenic 25.0%
! ACATATCTTTAATTGACATG+AGG + chr2_2:55154633-55154652 Msa0258670:intron 25.0%
! TCAAAATCTGTTCTTGTAAT+GGG - chr2_2:55154701-55154720 None:intergenic 25.0%
! TTCAAAATCTGTTCTTGTAA+TGG - chr2_2:55154702-55154721 None:intergenic 25.0%
!!! TACAAGAACAGATTTTGAAA+AGG + chr2_2:55154703-55154722 Msa0258670:CDS 25.0%
!!! TCCTTTTTATGTTATTTTCG+GGG + chr2_2:55154907-55154926 Msa0258670:CDS 25.0%
GATTTGTGTGTGAAGAAAAA+AGG - chr2_2:55150029-55150048 None:intergenic 30.0%
GAAAAATTGAAAATTGAGGG+AGG - chr2_2:55150051-55150070 None:intergenic 30.0%
AACGATGTATAGCAATTTCA+AGG + chr2_2:55150098-55150117 Msa0258670:exon 30.0%
! AAACGCTTTTGAATAGTTTC+CGG - chr2_2:55150169-55150188 None:intergenic 30.0%
! TCTAAAGCGTTCATGTATAA+AGG - chr2_2:55150192-55150211 None:intergenic 30.0%
! GTAATTGCTTCTCTGATTTT+AGG - chr2_2:55150249-55150268 None:intergenic 30.0%
GTTGAATTCTGCGATTATTA+GGG + chr2_2:55150461-55150480 Msa0258670:CDS 30.0%
ACATCATTCCACTTAACATT+CGG - chr2_2:55150492-55150511 None:intergenic 30.0%
AAAAATTGAGGAAACTTGAC+AGG - chr2_2:55150564-55150583 None:intergenic 30.0%
!!! TTTCCTCAATTTTTTACTGG+TGG + chr2_2:55150570-55150589 Msa0258670:intron 30.0%
!!! TTCCTCAATTTTTTACTGGT+GGG + chr2_2:55150571-55150590 Msa0258670:intron 30.0%
ATTATTGTCTTTGTCGTGTT+TGG + chr2_2:55150603-55150622 Msa0258670:intron 30.0%
TAGTTCAATCCATATCGAAA+TGG + chr2_2:55151112-55151131 Msa0258670:intron 30.0%
! CAATTAATTGAAGGTGTGTT+TGG - chr2_2:55151195-55151214 None:intergenic 30.0%
CTGACACTTCAATTAATTGA+AGG - chr2_2:55151204-55151223 None:intergenic 30.0%
!!! GATTGTGTTTGTGTCTTTTT+TGG + chr2_2:55151326-55151345 Msa0258670:intron 30.0%
AAGATTGGATATCAATACCA+AGG + chr2_2:55151359-55151378 Msa0258670:intron 30.0%
!!! CATATTGATTTTGGTATGCA+AGG + chr2_2:55151388-55151407 Msa0258670:intron 30.0%
!! AGTTGGCAAGTTTGTTAATT+TGG + chr2_2:55151431-55151450 Msa0258670:intron 30.0%
! CATGTTTTCAATGTTTTGTG+CGG + chr2_2:55151584-55151603 Msa0258670:intron 30.0%
!! AAAACTTTGAAACCATGAAG+TGG + chr2_2:55151627-55151646 Msa0258670:intron 30.0%
AGCGAAAGCAAGATTATATT+GGG + chr2_2:55151691-55151710 Msa0258670:intron 30.0%
ATCGAATGTGTATAGTTATG+TGG + chr2_2:55151759-55151778 Msa0258670:intron 30.0%
! AAATATGATTTTCCAGTTCC+AGG - chr2_2:55151869-55151888 None:intergenic 30.0%
TGGAAAATCATATTTAGCCA+AGG + chr2_2:55151874-55151893 Msa0258670:CDS 30.0%
GAGAATATGATTTCATTCCA+AGG - chr2_2:55152026-55152045 None:intergenic 30.0%
TACTTAAATACCAAATGGCT+AGG - chr2_2:55152143-55152162 None:intergenic 30.0%
AATTATGATGTATGTTGCTC+TGG + chr2_2:55152396-55152415 Msa0258670:intron 30.0%
ATTATGATGTATGTTGCTCT+GGG + chr2_2:55152397-55152416 Msa0258670:intron 30.0%
GAATAAAGCATGGAAAATTG+AGG - chr2_2:55152497-55152516 None:intergenic 30.0%
TTATGAATTAGGCACATAAG+TGG + chr2_2:55152583-55152602 Msa0258670:intron 30.0%
AAGATCTGATGAAGAAATAC+TGG - chr2_2:55152648-55152667 None:intergenic 30.0%
!!! GGTTTCAAACCTTTTTCAAA+TGG + chr2_2:55152700-55152719 Msa0258670:CDS 30.0%
ATCAACAAATATGATAGAGG+GGG - chr2_2:55152738-55152757 None:intergenic 30.0%
CATCAACAAATATGATAGAG+GGG - chr2_2:55152739-55152758 None:intergenic 30.0%
!!! CAGGTAATAGCTTTATGTTT+TGG + chr2_2:55152845-55152864 Msa0258670:intron 30.0%
ATACAAGCATGCACTTAAAT+GGG - chr2_2:55153066-55153085 None:intergenic 30.0%
AATACAAGCATGCACTTAAA+TGG - chr2_2:55153067-55153086 None:intergenic 30.0%
AGACTGACAAATAAAAACCA+AGG - chr2_2:55153124-55153143 None:intergenic 30.0%
! GCTTTTCAATTTCAAGAACT+TGG + chr2_2:55153153-55153172 Msa0258670:intron 30.0%
TTTCAATTTCAAGAACTTGG+AGG + chr2_2:55153156-55153175 Msa0258670:intron 30.0%
TATGTTGGAGTAGAAAATGT+TGG + chr2_2:55153231-55153250 Msa0258670:intron 30.0%
ATGTTGGAGTAGAAAATGTT+GGG + chr2_2:55153232-55153251 Msa0258670:intron 30.0%
!!! AAGGCTTAGTTTGTTTTTGT+AGG - chr2_2:55153421-55153440 None:intergenic 30.0%
! TGAATTTTTCTTGTCTTAGC+AGG + chr2_2:55153463-55153482 Msa0258670:intron 30.0%
TTCCTTTGTTCAGCATATTA+TGG + chr2_2:55153620-55153639 Msa0258670:intron 30.0%
! TCCTCTCTTACAATGTATTT+TGG + chr2_2:55153717-55153736 Msa0258670:intron 30.0%
! CCTCTCTTACAATGTATTTT+GGG + chr2_2:55153718-55153737 Msa0258670:intron 30.0%
ATTTGTATTTGCAGGCAATA+AGG + chr2_2:55154001-55154020 Msa0258670:intron 30.0%
! TTTTTAATCTCTTCAGGTGA+AGG + chr2_2:55154368-55154387 Msa0258670:intron 30.0%
AAAGAAGAACATAGCATCTT+GGG - chr2_2:55154421-55154440 None:intergenic 30.0%
TAAAGAAGAACATAGCATCT+TGG - chr2_2:55154422-55154441 None:intergenic 30.0%
! CGAGATACTATAGATTTTGA+TGG + chr2_2:55154545-55154564 Msa0258670:intron 30.0%
!!! ATCTGCATAAGTTTTAAGGT+GGG - chr2_2:55154668-55154687 None:intergenic 30.0%
! AAGGATCTGCATAAGTTTTA+AGG - chr2_2:55154672-55154691 None:intergenic 30.0%
AAAATCTGTTCTTGTAATGG+GGG - chr2_2:55154699-55154718 None:intergenic 30.0%
CAAAATCTGTTCTTGTAATG+GGG - chr2_2:55154700-55154719 None:intergenic 30.0%
!! ATTTTGAAAAGGTTCTTGCT+AGG + chr2_2:55154714-55154733 Msa0258670:CDS 30.0%
TCCCCGAAAATAACATAAAA+AGG - chr2_2:55154911-55154930 None:intergenic 30.0%
! TAGAAAACTAACTTGTGTCA+TGG + chr2_2:55155024-55155043 Msa0258670:CDS 30.0%
ACTGAATTCATTAAAGATGC+TGG + chr2_2:55155175-55155194 Msa0258670:CDS 30.0%
AAAGGGAAACCCTAGAAATT+GGG - chr2_2:55150011-55150030 None:intergenic 35.0%
AAAAGGGAAACCCTAGAAAT+TGG - chr2_2:55150012-55150031 None:intergenic 35.0%
GGTTGAATTCTGCGATTATT+AGG + chr2_2:55150460-55150479 Msa0258670:CDS 35.0%
TTAAGTGGAATGATGTTGCT+GGG + chr2_2:55150496-55150515 Msa0258670:CDS 35.0%
AACCCACCAGTAAAAAATTG+AGG - chr2_2:55150576-55150595 None:intergenic 35.0%
!!! TCAATTTTTTACTGGTGGGT+TGG + chr2_2:55150575-55150594 Msa0258670:intron 35.0%
CTTTGTCGTGTTTGGATAAA+CGG + chr2_2:55150611-55150630 Msa0258670:intron 35.0%
TAAGCAGTTATCGAGCATAT+AGG - chr2_2:55150649-55150668 None:intergenic 35.0%
AGGTTCGTTATTCCTTAAGT+GGG - chr2_2:55151016-55151035 None:intergenic 35.0%
TAGGTTCGTTATTCCTTAAG+TGG - chr2_2:55151017-55151036 None:intergenic 35.0%
TGTGAGGGTTTATATAGGAT+TGG + chr2_2:55151050-55151069 Msa0258670:intron 35.0%
GTGAGGGTTTATATAGGATT+GGG + chr2_2:55151051-55151070 Msa0258670:intron 35.0%
!!! TGTGTTTGTGTCTTTTTTGG+AGG + chr2_2:55151329-55151348 Msa0258670:intron 35.0%
!!! TTTGTGTCTTTTTTGGAGGA+GGG + chr2_2:55151333-55151352 Msa0258670:intron 35.0%
! AGCTTTTCACAGTTGAAAGT+TGG + chr2_2:55151414-55151433 Msa0258670:intron 35.0%
GAGCGAAAGCAAGATTATAT+TGG + chr2_2:55151690-55151709 Msa0258670:intron 35.0%
AATGTTTACTATGCTTCCTG+CGG + chr2_2:55151792-55151811 Msa0258670:intron 35.0%
TACAACAAAAATGCTCTCCA+TGG - chr2_2:55151839-55151858 None:intergenic 35.0%
!!! TGGAGAGCATTTTTGTTGTA+TGG + chr2_2:55151839-55151858 Msa0258670:CDS 35.0%
CAAGGATAATCCTTGTAATC+AGG - chr2_2:55152008-55152027 None:intergenic 35.0%
CTGATTACAAGGATTATCCT+TGG + chr2_2:55152006-55152025 Msa0258670:intron 35.0%
GGCATTAAAATTTGAACTGC+AGG + chr2_2:55152095-55152114 Msa0258670:intron 35.0%
AAGCATGGAAAATTGAGGTA+TGG - chr2_2:55152492-55152511 None:intergenic 35.0%
! CATCAGATCTTGTTTCAAAG+TGG + chr2_2:55152657-55152676 Msa0258670:CDS 35.0%
! AGATCTTGTTTCAAAGTGGA+TGG + chr2_2:55152661-55152680 Msa0258670:CDS 35.0%
! GATCTTGTTTCAAAGTGGAT+GGG + chr2_2:55152662-55152681 Msa0258670:CDS 35.0%
TTTCTCGAGCCATTTGAAAA+AGG - chr2_2:55152712-55152731 None:intergenic 35.0%
GATGAAATAGATTCCCTATG+TGG + chr2_2:55152755-55152774 Msa0258670:CDS 35.0%
ACGAATCAAAACAGAACTTC+TGG + chr2_2:55152814-55152833 Msa0258670:CDS 35.0%
TAAGTGCATGCTTGTATTTG+TGG + chr2_2:55153069-55153088 Msa0258670:intron 35.0%
TTTGTTTCATATCTCGCACT+TGG - chr2_2:55153261-55153280 None:intergenic 35.0%
GAAACAAAGAAGTTCCACAT+CGG + chr2_2:55153273-55153292 Msa0258670:intron 35.0%
!! TAGTTTGTTATTAGCCGATG+TGG - chr2_2:55153290-55153309 None:intergenic 35.0%
TGAAGAATACACAATGCAAG+TGG + chr2_2:55153312-55153331 Msa0258670:intron 35.0%
CCTTAAGAAGTTGGGTTAAT+GGG - chr2_2:55153348-55153367 None:intergenic 35.0%
ACCTTAAGAAGTTGGGTTAA+TGG - chr2_2:55153349-55153368 None:intergenic 35.0%
! AACCCAACTTCTTAAGGTTT+TGG + chr2_2:55153351-55153370 Msa0258670:intron 35.0%
! ACCCAACTTCTTAAGGTTTT+GGG + chr2_2:55153352-55153371 Msa0258670:intron 35.0%
TCCCAAAACCTTAAGAAGTT+GGG - chr2_2:55153356-55153375 None:intergenic 35.0%
TTCCCAAAACCTTAAGAAGT+TGG - chr2_2:55153357-55153376 None:intergenic 35.0%
!!! TAAGGTTTTGGGAACAAATG+TGG + chr2_2:55153363-55153382 Msa0258670:intron 35.0%
GACCATAATATGCTGAACAA+AGG - chr2_2:55153625-55153644 None:intergenic 35.0%
AGCATATTATGGTCTGTTGT+TGG + chr2_2:55153631-55153650 Msa0258670:intron 35.0%
CCCAAAATACATTGTAAGAG+AGG - chr2_2:55153721-55153740 None:intergenic 35.0%
TATTCCACTACCAGATTTGA+AGG + chr2_2:55154047-55154066 Msa0258670:CDS 35.0%
ACACGTTAAAACCATTTGCT+AGG - chr2_2:55154146-55154165 None:intergenic 35.0%
!! TTTGGCTTGATAAATTGAGC+AGG + chr2_2:55154177-55154196 Msa0258670:intron 35.0%
ATTATGAATACTTGGCTAGC+AGG + chr2_2:55154239-55154258 Msa0258670:CDS 35.0%
AAGTAAAAGGCGATTGAAAC+AGG - chr2_2:55154327-55154346 None:intergenic 35.0%
! TGTTTCAATCGCCTTTTACT+TGG + chr2_2:55154326-55154345 Msa0258670:intron 35.0%
! TTCTTCTTTAAGAGTCCTGA+GGG + chr2_2:55154432-55154451 Msa0258670:CDS 35.0%
! TACAAAAGGACTTGCTTCAA+AGG + chr2_2:55154518-55154537 Msa0258670:CDS 35.0%
!! CTATAGATTTTGATGGCTGT+TGG + chr2_2:55154552-55154571 Msa0258670:intron 35.0%
!!! GATCTGCATAAGTTTTAAGG+TGG - chr2_2:55154669-55154688 None:intergenic 35.0%
! AAATCTGTTCTTGTAATGGG+GGG - chr2_2:55154698-55154717 None:intergenic 35.0%
TGAATCTCTCATGAACTTCA+AGG - chr2_2:55154766-55154785 None:intergenic 35.0%
AGTTCATGAGAGATTCACAA+AGG + chr2_2:55154769-55154788 Msa0258670:CDS 35.0%
! AAAACTAACTTGTGTCATGG+TGG + chr2_2:55155027-55155046 Msa0258670:CDS 35.0%
AGAAAAGGGGAAAGATGGAT+TGG - chr2_2:55149949-55149968 None:intergenic 40.0%
GAATAAGGGAGGAAGAAAAG+GGG - chr2_2:55149962-55149981 None:intergenic 40.0%
GGAATAAGGGAGGAAGAAAA+GGG - chr2_2:55149963-55149982 None:intergenic 40.0%
ACCATCTTCCCCAATTTCTA+GGG + chr2_2:55149999-55150018 Msa0258670:five_prime_UTR 40.0%
AAGGGAAACCCTAGAAATTG+GGG - chr2_2:55150010-55150029 None:intergenic 40.0%
GTTAAGTGGAATGATGTTGC+TGG + chr2_2:55150495-55150514 Msa0258670:CDS 40.0%
GCTCTTACAAATAGTCTCGT+AGG + chr2_2:55150782-55150801 Msa0258670:intron 40.0%
CTATATCGACCCTTGTTCTA+TGG + chr2_2:55150840-55150859 Msa0258670:intron 40.0%
GTTTGTGCTCCATAGAACAA+GGG - chr2_2:55150852-55150871 None:intergenic 40.0%
TGTTTGTGCTCCATAGAACA+AGG - chr2_2:55150853-55150872 None:intergenic 40.0%
! TTTACCGGTGTTAATGTGCA+AGG + chr2_2:55150964-55150983 Msa0258670:intron 40.0%
CTTAAGTGGGACTCTAAGTT+GGG - chr2_2:55151003-55151022 None:intergenic 40.0%
TAATCATGAACCTCGTGTGA+GGG + chr2_2:55151035-55151054 Msa0258670:intron 40.0%
TCAAAAACCATGGCTGAAAG+GGG - chr2_2:55151084-55151103 None:intergenic 40.0%
CTCAAAAACCATGGCTGAAA+GGG - chr2_2:55151085-55151104 None:intergenic 40.0%
! CTTTCAGCCATGGTTTTTGA+GGG + chr2_2:55151084-55151103 Msa0258670:intron 40.0%
!! TTTCAGCCATGGTTTTTGAG+GGG + chr2_2:55151085-55151104 Msa0258670:intron 40.0%
CAGTCACTTCCATTTCGATA+TGG - chr2_2:55151124-55151143 None:intergenic 40.0%
!!! GTTTGTGTCTTTTTTGGAGG+AGG + chr2_2:55151332-55151351 Msa0258670:intron 40.0%
!!! TTGTGTCTTTTTTGGAGGAG+GGG + chr2_2:55151334-55151353 Msa0258670:intron 40.0%
! TTTCAGGTAAAAGACGACCA+TGG + chr2_2:55151819-55151838 Msa0258670:intron 40.0%
!! TTTTTGTTGTATGGACCTCC+TGG + chr2_2:55151848-55151867 Msa0258670:CDS 40.0%
! TATGATTTTCCAGTTCCAGG+AGG - chr2_2:55151866-55151885 None:intergenic 40.0%
!! AGGCTGATTCCACATTTTTC+AGG + chr2_2:55151909-55151928 Msa0258670:CDS 40.0%
TAGGAACTTGCCTGATTACA+AGG + chr2_2:55151995-55152014 Msa0258670:intron 40.0%
TGCATTGCTTGCTCTCTTAA+AGG + chr2_2:55152074-55152093 Msa0258670:intron 40.0%
CTGCAGGTAAGCAATTTCTT+AGG + chr2_2:55152111-55152130 Msa0258670:intron 40.0%
!! TTTCCATAGGACTTGCTGTT+AGG - chr2_2:55152224-55152243 None:intergenic 40.0%
GATGGGTGAAAGTGAAAAAC+TGG + chr2_2:55152679-55152698 Msa0258670:CDS 40.0%
! TTTCAAGAACTTGGAGGTGT+CGG + chr2_2:55153162-55153181 Msa0258670:intron 40.0%
AGAAGTTGGGTTAATGGGAT+GGG - chr2_2:55153343-55153362 None:intergenic 40.0%
AAGAAGTTGGGTTAATGGGA+TGG - chr2_2:55153344-55153363 None:intergenic 40.0%
CCCATTAACCCAACTTCTTA+AGG + chr2_2:55153345-55153364 Msa0258670:intron 40.0%
! TTTTCTTGTCTTAGCAGGAG+AGG + chr2_2:55153468-55153487 Msa0258670:intron 40.0%
ATTGCCCAATTCCACTACTA+TGG - chr2_2:55153499-55153518 None:intergenic 40.0%
! AGGAAAGCATGGAACTATGA+TGG - chr2_2:55153605-55153624 None:intergenic 40.0%
ATGCTGAACAAAGGAAAGCA+TGG - chr2_2:55153616-55153635 None:intergenic 40.0%
AATATTAGCGATGGCGACTA+CGG - chr2_2:55153675-55153694 None:intergenic 40.0%
TTTGTTCCTAGCATTGCTGT+AGG + chr2_2:55153768-55153787 Msa0258670:intron 40.0%
CTGCAAGAACAAGAACTTTC+TGG - chr2_2:55153886-55153905 None:intergenic 40.0%
! CTTACCTGGTCTAAAGCATA+AGG - chr2_2:55153920-55153939 None:intergenic 40.0%
TTGCCTTAAACATGTGTTGG+CGG - chr2_2:55154074-55154093 None:intergenic 40.0%
! CCAACACATGTTTAAGGCAA+GGG + chr2_2:55154074-55154093 Msa0258670:intron 40.0%
TAAATTGAGCAGGTGCATCT+TGG + chr2_2:55154187-55154206 Msa0258670:intron 40.0%
! ACATAGCATCTTGGGTTTTG+CGG - chr2_2:55154413-55154432 None:intergenic 40.0%
! GTTCTTCTTTAAGAGTCCTG+AGG + chr2_2:55154431-55154450 Msa0258670:CDS 40.0%
CGCAGTTCAAACTACAATGA+CGG + chr2_2:55154488-55154507 Msa0258670:CDS 40.0%
!! ATGACGGATCTTGCTACAAA+AGG + chr2_2:55154504-55154523 Msa0258670:CDS 40.0%
!! GGTTGTGATATTTTTCGACG+AGG + chr2_2:55154603-55154622 Msa0258670:intron 40.0%
AAAAGGTTCTTGCTAGGCAA+AGG + chr2_2:55154720-55154739 Msa0258670:CDS 40.0%
!!! AGGTCACTTTTGCTTACTGT+AGG - chr2_2:55154746-55154765 None:intergenic 40.0%
GAGAGATTCACAAAGGAGTT+TGG + chr2_2:55154776-55154795 Msa0258670:CDS 40.0%
ACAAAGGAGTTTGGAGAAGA+AGG + chr2_2:55154785-55154804 Msa0258670:CDS 40.0%
TAAATCAACCTCCGCACAAT+CGG - chr2_2:55154944-55154963 None:intergenic 40.0%
! CGGAGGTTGATTTATTACGA+TGG + chr2_2:55154950-55154969 Msa0258670:CDS 40.0%
GAGGAAGAAAAGGGGAAAGA+TGG - chr2_2:55149954-55149973 None:intergenic 45.0%
GGGAATAAGGGAGGAAGAAA+AGG - chr2_2:55149964-55149983 None:intergenic 45.0%
GGTGATCTGATCGGGAATAA+GGG - chr2_2:55149976-55149995 None:intergenic 45.0%
TGGTGATCTGATCGGGAATA+AGG - chr2_2:55149977-55149996 None:intergenic 45.0%
CTAGAAATTGGGGAAGATGG+TGG - chr2_2:55150000-55150019 None:intergenic 45.0%
CACCATCTTCCCCAATTTCT+AGG + chr2_2:55149998-55150017 Msa0258670:five_prime_UTR 45.0%
ACCCTAGAAATTGGGGAAGA+TGG - chr2_2:55150003-55150022 None:intergenic 45.0%
CTCAGCACGACGTAAATACT+CGG - chr2_2:55150283-55150302 None:intergenic 45.0%
GGGAAAAGCCGAATGTTAAG+TGG + chr2_2:55150481-55150500 Msa0258670:CDS 45.0%
CCTTAAGTGGGACTCTAAGT+TGG - chr2_2:55151004-55151023 None:intergenic 45.0%
CCAACTTAGAGTCCCACTTA+AGG + chr2_2:55151001-55151020 Msa0258670:intron 45.0%
CTCACACGAGGTTCATGATT+AGG - chr2_2:55151036-55151055 None:intergenic 45.0%
CTAATCATGAACCTCGTGTG+AGG + chr2_2:55151034-55151053 Msa0258670:intron 45.0%
CCTATATAAACCCTCACACG+AGG - chr2_2:55151048-55151067 None:intergenic 45.0%
CCTCGTGTGAGGGTTTATAT+AGG + chr2_2:55151045-55151064 Msa0258670:intron 45.0%
CCTCAAAAACCATGGCTGAA+AGG - chr2_2:55151086-55151105 None:intergenic 45.0%
! CCTTTCAGCCATGGTTTTTG+AGG + chr2_2:55151083-55151102 Msa0258670:intron 45.0%
!! TTCAGCCATGGTTTTTGAGG+GGG + chr2_2:55151086-55151105 Msa0258670:intron 45.0%
TAACTCCCCCTCAAAAACCA+TGG - chr2_2:55151094-55151113 None:intergenic 45.0%
TTTGGAGGAGGGGATAAGAT+TGG + chr2_2:55151344-55151363 Msa0258670:intron 45.0%
TTTGTGCGGAGAACTCTACA+AGG + chr2_2:55151598-55151617 Msa0258670:intron 45.0%
! GGTCGTCTTTTACCTGAAAG+AGG - chr2_2:55151818-55151837 None:intergenic 45.0%
TAGGACTTTGCCTAGCCATT+TGG + chr2_2:55152130-55152149 Msa0258670:intron 45.0%
!! TTTGGCATTTGGTGCAGTTG+CGG - chr2_2:55152180-55152199 None:intergenic 45.0%
AGTCCTAACAGCAAGTCCTA+TGG + chr2_2:55152218-55152237 Msa0258670:intron 45.0%
! GAGATTGAGCTGTTTCATGC+TGG + chr2_2:55153519-55153538 Msa0258670:intron 45.0%
TTGGAACCTACAGCAATGCT+AGG - chr2_2:55153777-55153796 None:intergenic 45.0%
! CACACCTTATGCTTTAGACC+AGG + chr2_2:55153913-55153932 Msa0258670:CDS 45.0%
!! TAGCTTCCTGCTGACTCTAT+GGG - chr2_2:55153968-55153987 None:intergenic 45.0%
!! ATAGCTTCCTGCTGACTCTA+TGG - chr2_2:55153969-55153988 None:intergenic 45.0%
! TGCCTTAAACATGTGTTGGC+GGG - chr2_2:55154073-55154092 None:intergenic 45.0%
! GCCAACACATGTTTAAGGCA+AGG + chr2_2:55154073-55154092 Msa0258670:intron 45.0%
CCCTTGCCTTAAACATGTGT+TGG - chr2_2:55154077-55154096 None:intergenic 45.0%
! TTAAGAGTCCTGAGGGTATG+TGG + chr2_2:55154439-55154458 Msa0258670:CDS 45.0%
ATGTGAAGTTCCCGATTGTG+CGG + chr2_2:55154930-55154949 Msa0258670:CDS 45.0%
AAATCAACCTCCGCACAATC+GGG - chr2_2:55154943-55154962 None:intergenic 45.0%
GTCATGGTGGTTGCTTATGT+TGG + chr2_2:55155040-55155059 Msa0258670:CDS 45.0%
GATCTGATCGGGAATAAGGG+AGG - chr2_2:55149973-55149992 None:intergenic 50.0%
!! ATGGTGGTGGTGATCTGATC+GGG - chr2_2:55149984-55150003 None:intergenic 50.0%
!! GATGGTGGTGGTGATCTGAT+CGG - chr2_2:55149985-55150004 None:intergenic 50.0%
! GAAATTGGGGAAGATGGTGG+TGG - chr2_2:55149997-55150016 None:intergenic 50.0%
TCCGGCATTGTCTTCGTGTA+CGG - chr2_2:55150151-55150170 None:intergenic 50.0%
CGAGTATTTACGTCGTGCTG+AGG + chr2_2:55150281-55150300 Msa0258670:CDS 50.0%
ATCAGGGCTGTGCTTGATGA+CGG + chr2_2:55150306-55150325 Msa0258670:CDS 50.0%
CCATCCTTCCCCTTACTCTT+CGG - chr2_2:55150378-55150397 None:intergenic 50.0%
AAGAGTAAGGGGAAGGATGG+TGG + chr2_2:55150378-55150397 Msa0258670:CDS 50.0%
GTGGAATGATGTTGCTGGGT+TGG + chr2_2:55150500-55150519 Msa0258670:CDS 50.0%
!! TGGGTTGGAGAGTGCTAAAC+AGG + chr2_2:55150515-55150534 Msa0258670:CDS 50.0%
GAGTGCTAAACAGGCTTTGC+AGG + chr2_2:55150524-55150543 Msa0258670:CDS 50.0%
! ACCGGTGTTAATGTGCAAGG+AGG + chr2_2:55150967-55150986 Msa0258670:intron 50.0%
CCCTCCTTGCACATTAACAC+CGG - chr2_2:55150971-55150990 None:intergenic 50.0%
! CCGGTGTTAATGTGCAAGGA+GGG + chr2_2:55150968-55150987 Msa0258670:intron 50.0%
AAAACCATGGCTGAAAGGGG+AGG - chr2_2:55151081-55151100 None:intergenic 50.0%
ACCATGAAGTGGCTGTTCTC+TGG + chr2_2:55151638-55151657 Msa0258670:intron 50.0%
TCCAGAGAACAGCCACTTCA+TGG - chr2_2:55151642-55151661 None:intergenic 50.0%
! TTTTACCTGAAAGAGGCCGC+AGG - chr2_2:55151811-55151830 None:intergenic 50.0%
TTGTATGGACCTCCTGGAAC+TGG + chr2_2:55151854-55151873 Msa0258670:CDS 50.0%
AGAACTTCTGGTGCAGATGC+AGG + chr2_2:55152826-55152845 Msa0258670:CDS 50.0%
CCAATTCCACTACTATGGCC+CGG - chr2_2:55153494-55153513 None:intergenic 50.0%
! CGGGCCATAGTAGTGGAATT+GGG + chr2_2:55153492-55153511 Msa0258670:intron 50.0%
TATCACCCCATAGAGTCAGC+AGG + chr2_2:55153959-55153978 Msa0258670:intron 50.0%
!! AGCTTCCTGCTGACTCTATG+GGG - chr2_2:55153967-55153986 None:intergenic 50.0%
ATACTTGGCTAGCAGGACAG+AGG + chr2_2:55154246-55154265 Msa0258670:CDS 50.0%
TACTTGGCTAGCAGGACAGA+GGG + chr2_2:55154247-55154266 Msa0258670:CDS 50.0%
!! CCTGTTGCTTTGGTCCACAT+GGG - chr2_2:55154467-55154486 None:intergenic 50.0%
CCATGTGGACCAAAGCAACA+GGG + chr2_2:55154465-55154484 Msa0258670:CDS 50.0%
! TTCTTGTAATGGGGGGTGGA+AGG - chr2_2:55154691-55154710 None:intergenic 50.0%
! TCTGTTCTTGTAATGGGGGG+TGG - chr2_2:55154695-55154714 None:intergenic 50.0%
GCCGTACACGAAGACAATGC+CGG + chr2_2:55150147-55150166 Msa0258670:CDS 55.0%
TACGTCGTGCTGAGGAGATC+AGG + chr2_2:55150289-55150308 Msa0258670:CDS 55.0%
ACGTCGTGCTGAGGAGATCA+GGG + chr2_2:55150290-55150309 Msa0258670:CDS 55.0%
AGCTTCTAATGGCGATGCCG+CGG + chr2_2:55150341-55150360 Msa0258670:CDS 55.0%
TGCTACGAGGCCGAAGAGTA+AGG + chr2_2:55150365-55150384 Msa0258670:CDS 55.0%
GCTACGAGGCCGAAGAGTAA+GGG + chr2_2:55150366-55150385 Msa0258670:CDS 55.0%
CTACGAGGCCGAAGAGTAAG+GGG + chr2_2:55150367-55150386 Msa0258670:CDS 55.0%
CCGAAGAGTAAGGGGAAGGA+TGG + chr2_2:55150375-55150394 Msa0258670:CDS 55.0%
! AGTAAGGGGAAGGATGGTGG+TGG + chr2_2:55150381-55150400 Msa0258670:CDS 55.0%
! GTAAGGGGAAGGATGGTGGT+GGG + chr2_2:55150382-55150401 Msa0258670:CDS 55.0%
! TAAGGGGAAGGATGGTGGTG+GGG + chr2_2:55150383-55150402 Msa0258670:CDS 55.0%
AGGTGGTGAAGGAGAGGATC+CGG + chr2_2:55150416-55150435 Msa0258670:CDS 55.0%
CAATCCTCCCCTTTCAGCCA+TGG + chr2_2:55151074-55151093 Msa0258670:intron 55.0%
AGCCAAGGCAGTTGCAACTG+AGG + chr2_2:55151889-55151908 Msa0258670:CDS 55.0%
AGCCTCAGTTGCAACTGCCT+TGG - chr2_2:55151894-55151913 None:intergenic 55.0%
TTCTCCACGCTGGCCACATA+GGG - chr2_2:55152771-55152790 None:intergenic 55.0%
TCTCATTGCCTTCTCCACGC+TGG - chr2_2:55152781-55152800 None:intergenic 55.0%
CTTGTCTTAGCAGGAGAGGC+CGG + chr2_2:55153472-55153491 Msa0258670:intron 55.0%
TTGTCTTAGCAGGAGAGGCC+GGG + chr2_2:55153473-55153492 Msa0258670:intron 55.0%
! CCGGGCCATAGTAGTGGAAT+TGG + chr2_2:55153491-55153510 Msa0258670:intron 55.0%
CGGGCCTTCAAATCTGGTAG+TGG - chr2_2:55154054-55154073 None:intergenic 55.0%
! TGTTGGCGGGCCTTCAAATC+TGG - chr2_2:55154060-55154079 None:intergenic 55.0%
GGCCCGCCAACACATGTTTA+AGG + chr2_2:55154068-55154087 Msa0258670:CDS 55.0%
ACTTGGCTAGCAGGACAGAG+GGG + chr2_2:55154248-55154267 Msa0258670:CDS 55.0%
! AGCAGGACAGAGGGGTTTTC+TGG + chr2_2:55154256-55154275 Msa0258670:CDS 55.0%
! GCATCTTGGGTTTTGCGGAC+AGG - chr2_2:55154408-55154427 None:intergenic 55.0%
CATGGGATCCACATACCCTC+AGG - chr2_2:55154450-55154469 None:intergenic 55.0%
! GAGGGTATGTGGATCCCATG+TGG + chr2_2:55154450-55154469 Msa0258670:CDS 55.0%
CCCATGTGGACCAAAGCAAC+AGG + chr2_2:55154464-55154483 Msa0258670:CDS 55.0%
!! CCCTGTTGCTTTGGTCCACA+TGG - chr2_2:55154468-55154487 None:intergenic 55.0%
! TGAACTGCGCCCTGTTGCTT+TGG - chr2_2:55154477-55154496 None:intergenic 55.0%
TGAAGTTCCCGATTGTGCGG+AGG + chr2_2:55154933-55154952 Msa0258670:CDS 55.0%
!! AGGGCTGTGCTTGATGACGG+TGG + chr2_2:55150309-55150328 Msa0258670:CDS 60.0%
!! GGGCTGTGCTTGATGACGGT+GGG + chr2_2:55150310-55150329 Msa0258670:CDS 60.0%
!! TGCTTGATGACGGTGGGCCA+GGG + chr2_2:55150316-55150335 Msa0258670:CDS 60.0%
TCGCCATTAGAAGCTGGCCC+TGG - chr2_2:55150336-55150355 None:intergenic 60.0%
GCGGCATCGCCATTAGAAGC+TGG - chr2_2:55150342-55150361 None:intergenic 60.0%
GAGGCCGAAGAGTAAGGGGA+AGG + chr2_2:55150371-55150390 Msa0258670:CDS 60.0%
TGGTGGAGGTGGTGAAGGAG+AGG + chr2_2:55150410-55150429 Msa0258670:CDS 60.0%
TGAAGGAGAGGATCCGGAGC+AGG + chr2_2:55150422-55150441 Msa0258670:CDS 60.0%
! GCTCTAAGCTTCGCCTGCTC+CGG - chr2_2:55150438-55150457 None:intergenic 60.0%
GGAGCAGGCGAAGCTTAGAG+CGG + chr2_2:55150437-55150456 Msa0258670:CDS 60.0%
GAGCAGGCGAAGCTTAGAGC+GGG + chr2_2:55150438-55150457 Msa0258670:CDS 60.0%
AGCAGGCGAAGCTTAGAGCG+GGG + chr2_2:55150439-55150458 Msa0258670:CDS 60.0%
TGCTTCCTGCGGCCTCTTTC+AGG + chr2_2:55151803-55151822 Msa0258670:intron 60.0%
GATTCCCTATGTGGCCAGCG+TGG + chr2_2:55152764-55152783 Msa0258670:CDS 60.0%
CTTCTCCACGCTGGCCACAT+AGG - chr2_2:55152772-55152791 None:intergenic 60.0%
CTATGTGGCCAGCGTGGAGA+AGG + chr2_2:55152770-55152789 Msa0258670:CDS 60.0%
!! GTGCTTGATGACGGTGGGCC+AGG + chr2_2:55150315-55150334 Msa0258670:CDS 65.0%
GGGCCAGGGCCAGCTTCTAA+TGG + chr2_2:55150330-55150349 Msa0258670:CDS 65.0%
CTTCGGCCTCGTAGCAACCG+CGG - chr2_2:55150361-55150380 None:intergenic 65.0%
!! GGGAAGGATGGTGGTGGGGA+GGG + chr2_2:55150387-55150406 Msa0258670:CDS 65.0%
!! AAGGATGGTGGTGGGGAGGG+TGG + chr2_2:55150390-55150409 Msa0258670:CDS 65.0%
!! GAGGGTGGTGGAGGTGGTGA+AGG + chr2_2:55150405-55150424 Msa0258670:CDS 65.0%
GAGAGGCCGGGCCATAGTAG+TGG + chr2_2:55153485-55153504 Msa0258670:intron 65.0%
GCGATGCCGCGGTTGCTACG+AGG + chr2_2:55150352-55150371 Msa0258670:CDS 70.0%
!! GGGGAAGGATGGTGGTGGGG+AGG + chr2_2:55150386-55150405 Msa0258670:CDS 70.0%
!! GATGGTGGTGGGGAGGGTGG+TGG + chr2_2:55150393-55150412 Msa0258670:CDS 70.0%
!! GGTGGTGGGGAGGGTGGTGG+AGG + chr2_2:55150396-55150415 Msa0258670:CDS 75.0%
!! GGTGGGGAGGGTGGTGGAGG+TGG + chr2_2:55150399-55150418 Msa0258670:CDS 75.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 55149861 55155201 55149861 ID=Msa0258670;Name=Msa0258670
chr2_2 mRNA 55149861 55155201 55149861 ID=Msa0258670-mRNA-1;Parent=Msa0258670;Name=Msa0258670-mRNA-1;_AED=0.15;_eAED=0.15;_QI=241|0.87|0.77|1|1|1|9|0|542
chr2_2 exon 55149861 55150588 55149861 ID=Msa0258670-mRNA-1:exon:16670;Parent=Msa0258670-mRNA-1
chr2_2 exon 55151825 55151930 55151825 ID=Msa0258670-mRNA-1:exon:16671;Parent=Msa0258670-mRNA-1
chr2_2 exon 55152649 55152847 55152649 ID=Msa0258670-mRNA-1:exon:16672;Parent=Msa0258670-mRNA-1
chr2_2 exon 55153866 55153934 55153866 ID=Msa0258670-mRNA-1:exon:16673;Parent=Msa0258670-mRNA-1
chr2_2 exon 55154015 55154089 55154015 ID=Msa0258670-mRNA-1:exon:16674;Parent=Msa0258670-mRNA-1
chr2_2 exon 55154199 55154297 55154199 ID=Msa0258670-mRNA-1:exon:16675;Parent=Msa0258670-mRNA-1
chr2_2 exon 55154384 55154539 55154384 ID=Msa0258670-mRNA-1:exon:16676;Parent=Msa0258670-mRNA-1
chr2_2 exon 55154686 55154806 55154686 ID=Msa0258670-mRNA-1:exon:16677;Parent=Msa0258670-mRNA-1
chr2_2 exon 55154885 55155201 55154885 ID=Msa0258670-mRNA-1:exon:16678;Parent=Msa0258670-mRNA-1
chr2_2 five_prime_UTR 55149861 55150101 55149861 ID=Msa0258670-mRNA-1:five_prime_utr;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55150102 55150588 55150102 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55151825 55151930 55151825 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55152649 55152847 55152649 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55153866 55153934 55153866 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55154015 55154089 55154015 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55154199 55154297 55154199 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55154384 55154539 55154384 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55154686 55154806 55154686 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
chr2_2 CDS 55154885 55155201 55154885 ID=Msa0258670-mRNA-1:cds;Parent=Msa0258670-mRNA-1
Gene Sequence

>Msa0258670

ATGTATAGCAATTTCAAGGAACAAGCAATAGAGTACGTGAAACAAGCCGTACACGAAGACAATGCCGGAAACTATTCAAAAGCGTTTCCTTTATACATGAACGCTTTAGAGTATTTCAAAACCCATTTAAAGTACGAAAAAAACCCTAAAATCAGAGAAGCAATTACGCAGAAATTCACCGAGTATTTACGTCGTGCTGAGGAGATCAGGGCTGTGCTTGATGACGGTGGGCCAGGGCCAGCTTCTAATGGCGATGCCGCGGTTGCTACGAGGCCGAAGAGTAAGGGGAAGGATGGTGGTGGGGAGGGTGGTGGAGGTGGTGAAGGAGAGGATCCGGAGCAGGCGAAGCTTAGAGCGGGGTTGAATTCTGCGATTATTAGGGAAAAGCCGAATGTTAAGTGGAATGATGTTGCTGGGTTGGAGAGTGCTAAACAGGCTTTGCAGGAAGCTGTTATTTTACCTGTCAAGTTTCCTCAATTTTTTACTGGTAAAAGACGACCATGGAGAGCATTTTTGTTGTATGGACCTCCTGGAACTGGAAAATCATATTTAGCCAAGGCAGTTGCAACTGAGGCTGATTCCACATTTTTCAGTATTTCTTCATCAGATCTTGTTTCAAAGTGGATGGGTGAAAGTGAAAAACTGGTTTCAAACCTTTTTCAAATGGCTCGAGAAAGTGCCCCCTCTATCATATTTGTTGATGAAATAGATTCCCTATGTGGCCAGCGTGGAGAAGGCAATGAGAGTGAAGCTTCAAGACGAATCAAAACAGAACTTCTGGTGCAGATGCAGGGTGTAGGAAACAATGACCAGAAAGTTCTTGTTCTTGCAGCAACAAACACACCTTATGCTTTAGACCAGGCAATAAGGCGTCGTTTTGATAAGCGTATTTATATTCCACTACCAGATTTGAAGGCCCGCCAACACATGTTTAAGGTGCATCTTGGAGATACTCCTCATAATTTAACTGAAAAGGATTATGAATACTTGGCTAGCAGGACAGAGGGGTTTTCTGGTTCAGATATATCTGTTTGCGTGAAGGATGTTCTATTTGAACCTGTCCGCAAAACCCAAGATGCTATGTTCTTCTTTAAGAGTCCTGAGGGTATGTGGATCCCATGTGGACCAAAGCAACAGGGCGCAGTTCAAACTACAATGACGGATCTTGCTACAAAAGGACTTGCTTCAAAGATCCTTCCACCCCCCATTACAAGAACAGATTTTGAAAAGGTTCTTGCTAGGCAAAGGCCTACAGTAAGCAAAAGTGACCTTGAAGTTCATGAGAGATTCACAAAGGAGTTTGGAGAAGAAGTTATTGAATCAAGTGAAATGCATCCTTTTTATGTTATTTTCGGGGATGTGAAGTTCCCGATTGTGCGGAGGTTGATTTATTACGATGGATACTCTCATTTTGTTTCTCCTAAATTGTGTATATTTGAATCTGAAATGATTAGAAAACTAACTTGTGTCATGGTGGTTGCTTATGTTGGTATAGTGCTTGTGTTTTTCAGTTTTCAAAACGATGTTTCATCTTGTAAAAAAAGATGGATGATTCACGATATATTCAGTAGCTATGCTGCACTGAACTATGATATAAGACAAACTGAATTCATTAAAGATGCTGGTTAG
Protein sequence

>Msa0258670

MYSNFKEQAIEYVKQAVHEDNAGNYSKAFPLYMNALEYFKTHLKYEKNPKIREAITQKFTEYLRRAEEIRAVLDDGGPGPASNGDAAVATRPKSKGKDGGGEGGGGGEGEDPEQAKLRAGLNSAIIREKPNVKWNDVAGLESAKQALQEAVILPVKFPQFFTGKRRPWRAFLLYGPPGTGKSYLAKAVATEADSTFFSISSSDLVSKWMGESEKLVSNLFQMARESAPSIIFVDEIDSLCGQRGEGNESEASRRIKTELLVQMQGVGNNDQKVLVLAATNTPYALDQAIRRRFDKRIYIPLPDLKARQHMFKVHLGDTPHNLTEKDYEYLASRTEGFSGSDISVCVKDVLFEPVRKTQDAMFFFKSPEGMWIPCGPKQQGAVQTTMTDLATKGLASKILPPPITRTDFEKVLARQRPTVSKSDLEVHERFTKEFGEEVIESSEMHPFYVIFGDVKFPIVRRLIYYDGYSHFVSPKLCIFESEMIRKLTCVMVVAYVGIVLVFFSFQNDVSSCKKRWMIHDIFSSYAALNYDIRQTEFIKDAG*