AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0467960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467960 MtrunA17_Chr3g0122431 99.296 284 2 0 1 284 86 369 0.0 586
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0467960 AT1G67325.1 70.588 289 78 4 1 284 1 287 6.23e-140 398
Msa0467960 AT1G67325.2 70.345 290 78 5 1 284 1 288 4.74e-138 394

Find 243 sgRNAs with CRISPR-Local

Find 413 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGAAACTTCAATTGTTTA+TGG 0.130184 3_3:+69454001 None:intergenic
TCAGGGATTGCATTCATATT+TGG 0.138494 3_3:+69452848 None:intergenic
CCCTATGAGGTTCCATTTAC+TGG 0.167642 3_3:-69456203 Msa0467960:CDS
TCAGGGATTCTATACATATT+TGG 0.168181 3_3:+69453431 None:intergenic
GCAATGTCAATTTCTCTTTC+AGG 0.172921 3_3:-69456952 Msa0467960:CDS
AAATTGACGTTACCACATTT+TGG 0.177028 3_3:+69455074 None:intergenic
TCTCTTAAAATAAATTATTT+AGG 0.192159 3_3:+69453329 None:intergenic
CAGGGATTCTATACATATTT+GGG 0.211681 3_3:+69453432 None:intergenic
TATATTGGTGCCCCACCTTA+TGG 0.213371 3_3:-69456254 Msa0467960:CDS
CACATTGTCTTGTATATCTT+TGG 0.217293 3_3:-69453198 Msa0467960:three_prime_UTR
GATTAGCACTCCCGGTATTC+AGG 0.237229 3_3:+69453413 None:intergenic
CTCTTATGCTTCCTGTCATT+TGG 0.241291 3_3:-69454431 Msa0467960:CDS
GCATACCTGGGATCCGGGTT+TGG 0.243357 3_3:+69455010 None:intergenic
CAGGGATTGCATTCATATTT+GGG 0.249475 3_3:+69452849 None:intergenic
ACTTTGGTGCCTTTGGTCTT+TGG 0.254708 3_3:-69453383 Msa0467960:three_prime_UTR
CGATGACAAGTCTCAGAAAA+AGG 0.257099 3_3:-69455225 Msa0467960:CDS
AATAATTAATGATGTCAAAT+AGG 0.268957 3_3:-69453535 Msa0467960:three_prime_UTR
TGTGATGATACAAGTAATTC+AGG 0.270284 3_3:+69452830 None:intergenic
GTGAACACCTTATGAATAAA+AGG 0.283154 3_3:+69452710 None:intergenic
TCATTGGCACTTGGTGCTTT+TGG 0.285846 3_3:+69453085 None:intergenic
GAAATTGACATTGCCGCAAC+TGG 0.289903 3_3:+69456961 None:intergenic
TATTAACTGAGATGGTATTT+TGG 0.292017 3_3:-69454163 Msa0467960:three_prime_UTR
AATCTTTGTGAGTGCTTTGT+TGG 0.292454 3_3:-69453673 Msa0467960:three_prime_UTR
AATCTTTGTGAGTGCTTTGT+TGG 0.292454 3_3:-69453714 Msa0467960:three_prime_UTR
GGTGGAGAGAGAAGAGAGAT+AGG 0.307163 3_3:+69453350 None:intergenic
TCTTCCAGCATTGCTCAGTT+TGG 0.312615 3_3:-69454270 Msa0467960:three_prime_UTR
GTCCAGCCATTTCTCGTCAT+TGG 0.313193 3_3:+69452568 None:intergenic
TAGGCTGATCCTCCAGTAAA+TGG 0.316077 3_3:+69456191 None:intergenic
CACATTGTCTTGTATACCTT+TGG 0.316373 3_3:+69453264 None:intergenic
CAGCGTTGTAAAAGAGGCTT+TGG 0.319360 3_3:+69452327 None:intergenic
GTGCTTTGTTGGGTCCATAC+TGG 0.320851 3_3:-69453703 Msa0467960:three_prime_UTR
GGATTTCACTTTGGTGCCTT+TGG 0.324797 3_3:-69453390 Msa0467960:three_prime_UTR
CTTCCAGCATTGCTCAGTTT+GGG 0.326844 3_3:-69454269 Msa0467960:three_prime_UTR
ATATGCCATGCCCCAGCTAT+TGG 0.331863 3_3:-69455803 Msa0467960:CDS
TCCAGCCATTTCTCGTCATT+GGG 0.333409 3_3:+69452569 None:intergenic
ATATTGGTGCCCCACCTTAT+GGG 0.333502 3_3:-69456253 Msa0467960:CDS
TTGTTGCACTTTGGTCTTGA+AGG 0.335707 3_3:-69452594 Msa0467960:three_prime_UTR
CCTTATGGGTCTTTATTCAA+TGG 0.342244 3_3:-69456239 Msa0467960:CDS
TGCCTTTGCAGGTTGATAAC+AGG 0.342807 3_3:-69457460 Msa0467960:intron
TATGGCCTCGGTGTCCCTAT+TGG 0.344398 3_3:-69455775 Msa0467960:CDS
CATACCTGGGATCCGGGTTT+GGG 0.368855 3_3:+69455011 None:intergenic
TCTGTCTGTTGCACTTGGTT+CGG 0.369594 3_3:+69454676 None:intergenic
CATTCATATTTGGGGACTAC+AGG 0.372955 3_3:+69452858 None:intergenic
ATGCAACTCGTGACAATGAT+TGG 0.373547 3_3:-69455103 Msa0467960:CDS
GGGGCGTTGGAGCCTAAATA+AGG 0.374623 3_3:+69456287 None:intergenic
TTTATTGTTGCAACAGAGAT+TGG 0.375131 3_3:-69454547 Msa0467960:CDS
ATATTTCACTTGGGTGTCAT+TGG 0.375214 3_3:+69453069 None:intergenic
TCTGGCATAAAGATTGTTGC+AGG 0.380709 3_3:-69454100 Msa0467960:three_prime_UTR
AAAGATTAGCCCGCCCAGTA+TGG 0.383695 3_3:+69453689 None:intergenic
CTTCCGCTGCCAAGCGTGCC+AGG 0.384768 3_3:-69457433 Msa0467960:CDS
GTTATTTGAACATCCACTTT+GGG 0.384950 3_3:+69453159 None:intergenic
ATTATTATATTAGACAAATC+AGG 0.385571 3_3:+69452409 None:intergenic
GGTGCAGTTACGCATATTGC+AGG 0.385655 3_3:+69456925 None:intergenic
ACCAAAAGGAAACTTAAAAC+TGG 0.389800 3_3:+69454075 None:intergenic
ATAAGGAGCTGCGGATGAAT+AGG 0.393530 3_3:+69456304 None:intergenic
TCATCCGCAGCTCCTTATTT+AGG 0.393685 3_3:-69456299 Msa0467960:CDS
ACCATTGCTCCAGGTCCAAT+AGG 0.396253 3_3:+69455760 None:intergenic
TACATATTTGGGGCCTATAC+AGG 0.398538 3_3:+69453443 None:intergenic
TCCAGTAAATGGAACCTCAT+AGG 0.398572 3_3:+69456202 None:intergenic
ATCTTTGTGAGTGCTTTGTT+GGG 0.402925 3_3:-69453672 Msa0467960:three_prime_UTR
ATCTTTGTGAGTGCTTTGTT+GGG 0.402925 3_3:-69453713 Msa0467960:three_prime_UTR
GCTAGATGTAATGGTCTATA+CGG 0.404926 3_3:+69456131 None:intergenic
ACACAATGGGAAACAGAATA+TGG 0.407375 3_3:+69453607 None:intergenic
GGCCATAGCGATCCAATAGC+TGG 0.408792 3_3:+69455791 None:intergenic
GGAGAGTTAAAATGCACTCT+TGG 0.418979 3_3:-69453490 Msa0467960:three_prime_UTR
ATAATCAAATAATGCTTCTC+AGG 0.421215 3_3:+69452796 None:intergenic
TACTTGCACTTTACCTGTAT+AGG 0.423645 3_3:-69453456 Msa0467960:three_prime_UTR
GAATTATGATCAGCAGGCCT+TGG 0.428440 3_3:+69456899 None:intergenic
CCTTAGCAGGGCACTAGGCC+AGG 0.428460 3_3:-69455257 Msa0467960:intron
ATCTCCAGATCAAAATGAAC+AGG 0.432251 3_3:-69454607 Msa0467960:CDS
ACATAGATTAGCACTCAGTA+TGG 0.435641 3_3:+69453648 None:intergenic
CCAGTAAATGGAACCTCATA+GGG 0.438911 3_3:+69456203 None:intergenic
ATCCACTTTGGGACAACTTG+TGG 0.446314 3_3:+69453170 None:intergenic
TTATCCCATACCATTGCTCC+AGG 0.446633 3_3:+69455751 None:intergenic
TGCTTTGTTGGGTCCATACT+GGG 0.446821 3_3:-69453702 Msa0467960:three_prime_UTR
TGTTATTTGAACATCCACTT+TGG 0.447233 3_3:+69453158 None:intergenic
CTCGGTGTCCCTATTGGACC+TGG 0.447427 3_3:-69455769 Msa0467960:CDS
TCGATTAATAAATCAATTCA+AGG 0.450386 3_3:-69452747 Msa0467960:three_prime_UTR
TATGATCAGCAGGCCTTGGT+TGG 0.450863 3_3:+69456903 None:intergenic
ACACCCAAACTGAGCAATGC+TGG 0.457221 3_3:+69454266 None:intergenic
CTGTTGCACTTGGTTCGGAA+TGG 0.457553 3_3:+69454681 None:intergenic
TCCACTTTGGGACAACTTGT+GGG 0.458577 3_3:+69453171 None:intergenic
ACAATTCTGTCTGTTGCACT+TGG 0.460673 3_3:+69454671 None:intergenic
CCCGCTCGAGAAGTAGTAGA+AGG 0.460836 3_3:-69457843 Msa0467960:five_prime_UTR
AGGTCCCCAATGACGAGAAA+TGG 0.460959 3_3:-69452574 Msa0467960:three_prime_UTR
CCCATTGTGTCGCTGACATA+CGG 0.463003 3_3:-69453594 Msa0467960:three_prime_UTR
ATGTGGGTGATGAGATCATT+GGG 0.463319 3_3:+69452531 None:intergenic
AAGGCAGCATACCTGGGATC+CGG 0.463801 3_3:+69455004 None:intergenic
TGAATACCGGGAGTGCTAAT+CGG 0.466600 3_3:-69453411 Msa0467960:three_prime_UTR
CTATTGGATCGCTATGGCCT+CGG 0.466850 3_3:-69455787 Msa0467960:CDS
AGCAGTGACTCGAAAGTAAA+CGG 0.468841 3_3:+69453877 None:intergenic
GCTCCACTGGTGTATGGTGC+TGG 0.469100 3_3:+69456104 None:intergenic
CCATTGCTCCAGGTCCAATA+GGG 0.469970 3_3:+69455761 None:intergenic
TCAGCCTATCAGTACAGTTA+TGG 0.471174 3_3:-69456176 Msa0467960:CDS
CCTCATATTGTATGCTTCAA+AGG 0.474076 3_3:+69452365 None:intergenic
GCTGGTCCTGCTAGATGTAA+TGG 0.476031 3_3:+69456122 None:intergenic
TGTATAGAATCCCTGAATAC+CGG 0.479233 3_3:-69453424 Msa0467960:three_prime_UTR
TTTCAGATTAGAGAGAATGA+TGG 0.480424 3_3:+69453112 None:intergenic
TGAAGGTTAGCAAATTGAAA+AGG 0.481784 3_3:+69454570 None:intergenic
ACTTGGGTGTCATTGGCACT+TGG 0.483585 3_3:+69453076 None:intergenic
TGTTGCACTTGGTTCGGAAT+GGG 0.484091 3_3:+69454682 None:intergenic
GAGAGTTAAAATGCACTCTT+GGG 0.485117 3_3:-69453489 Msa0467960:three_prime_UTR
GTGTCCAACCACGGCTCCAC+TGG 0.485675 3_3:+69456091 None:intergenic
AGAAGTCACTTGTTGCACTT+TGG 0.486330 3_3:-69452603 Msa0467960:three_prime_UTR
AAAAGATGCCGGAGGGAAGC+TGG 0.486610 3_3:-69454734 Msa0467960:CDS
AGGCTATGCCGATTGTAGTC+AGG 0.489272 3_3:+69452429 None:intergenic
ATTAGCACTCCCGGTATTCA+GGG 0.489411 3_3:+69453414 None:intergenic
GCTTCCATAACTGTACTGAT+AGG 0.490302 3_3:+69456172 None:intergenic
AAATTAGCACATATTTCACT+TGG 0.490788 3_3:+69453059 None:intergenic
AGTGTTCTTATCAGACTTTG+AGG 0.491350 3_3:+69454864 None:intergenic
ATTTGTTGTATTAACTGAGA+TGG 0.495787 3_3:-69454171 Msa0467960:three_prime_UTR
ACCACGGCTCCACTGGTGTA+TGG 0.498513 3_3:+69456098 None:intergenic
GCATTAAGCCTGACTACAAT+CGG 0.499049 3_3:-69452437 Msa0467960:three_prime_UTR
AAATAATGCTTCTCAGGAGA+AGG 0.502308 3_3:+69452802 None:intergenic
GTAGCCGCAGGGAAGATGAT+TGG 0.502761 3_3:-69456991 Msa0467960:CDS
TGCAACTCGTGACAATGATT+GGG 0.502973 3_3:-69455102 Msa0467960:CDS
AGTCCTGGCACGCTTGGCAG+CGG 0.503501 3_3:+69457430 None:intergenic
CCTTGCCTTAGCAGGGCACT+AGG 0.504169 3_3:-69455262 Msa0467960:intron
ATGATCAGCAGGCCTTGGTT+GGG 0.505822 3_3:+69456904 None:intergenic
ATCAAGCAGCGTTGTAAAAG+AGG 0.506512 3_3:+69452321 None:intergenic
ACTGCTCACCGTCATGTCTC+AGG 0.507462 3_3:-69457764 Msa0467960:intron
TCACACTTCCAGCTTCCCTC+CGG 0.511245 3_3:+69454726 None:intergenic
CTTAAAATAAATTATTTAGG+TGG 0.511278 3_3:+69453332 None:intergenic
TTGTTGGGTCCATACTGGGC+GGG 0.511402 3_3:-69453698 Msa0467960:three_prime_UTR
ACCATCAGTCCTGGCACGCT+TGG 0.511589 3_3:+69457424 None:intergenic
GAAGCCTCTTCAAGCTCCAC+AGG 0.514671 3_3:-69456327 Msa0467960:CDS
TAATAATTCTTCGCTTACAT+TGG 0.515160 3_3:-69453235 Msa0467960:three_prime_UTR
AGCACCCAGCTGATGATACT+AGG 0.515926 3_3:-69453751 Msa0467960:three_prime_UTR
AACTCCTTTAATGCAAAATG+TGG 0.516625 3_3:+69452514 None:intergenic
AGTTGTACTTAAAATGCAAA+AGG 0.516641 3_3:+69454039 None:intergenic
CCTTTGAAGCATACAATATG+AGG 0.516739 3_3:-69452365 Msa0467960:three_prime_UTR
CACACCCAAACCCGGATCCC+AGG 0.518215 3_3:-69455015 Msa0467960:intron
TATGGAAGCCGTGTTCCTGC+TGG 0.519467 3_3:-69456158 Msa0467960:CDS
CTTACAGAATTATGATCAGC+AGG 0.520212 3_3:+69456893 None:intergenic
CCGTATGTCAGCGACACAAT+GGG 0.520822 3_3:+69453594 None:intergenic
GGGGCACCAATATAAATTGA+AGG 0.521368 3_3:+69456263 None:intergenic
CACCAATATAAATTGAAGGG+GGG 0.525042 3_3:+69456267 None:intergenic
AAACATGTCTTAGTACTCAC+TGG 0.526208 3_3:+69454317 None:intergenic
GCACCAATATAAATTGAAGG+GGG 0.526551 3_3:+69456266 None:intergenic
CGATTAATAAATCAATTCAA+GGG 0.526714 3_3:-69452746 Msa0467960:three_prime_UTR
CCCTATTGGACCTGGAGCAA+TGG 0.527038 3_3:-69455761 Msa0467960:intron
TCTGTTGCAACAATAAATGA+AGG 0.531007 3_3:+69454553 None:intergenic
GTGATGATACAAGTAATTCA+GGG 0.531313 3_3:+69452831 None:intergenic
AACAAAAGAATCCAAATGAC+AGG 0.531789 3_3:+69454420 None:intergenic
ATTCATATTTGGGGACTACA+GGG 0.532526 3_3:+69452859 None:intergenic
GTGCTAATCGGATTTCACTT+TGG 0.532546 3_3:-69453399 Msa0467960:three_prime_UTR
ACTAATGATATCATGAAGGC+TGG 0.534368 3_3:-69452940 Msa0467960:three_prime_UTR
GCCAAGCGTGCCAGGACTGA+TGG 0.535235 3_3:-69457425 Msa0467960:intron
GAGTACTAAGACATGTTTGA+GGG 0.535687 3_3:-69454312 Msa0467960:three_prime_UTR
GTAAACGGTTTCTGTGATGC+TGG 0.537957 3_3:+69453892 None:intergenic
GCCATAGCGATCCAATAGCT+GGG 0.538615 3_3:+69455792 None:intergenic
TGGTAACGCACCATCAGTCC+TGG 0.539140 3_3:+69457415 None:intergenic
TAATGTCAGTGGTGCGCAGT+AGG 0.540797 3_3:+69453011 None:intergenic
CGTCAGCCGTGTCAATTACA+TGG 0.541836 3_3:-69453511 Msa0467960:three_prime_UTR
AATGTGGGTGATGAGATCAT+TGG 0.543408 3_3:+69452530 None:intergenic
AGGCAGCATACCTGGGATCC+GGG 0.543582 3_3:+69455005 None:intergenic
TGCTGACAAGCCAGCTGAGT+CGG 0.544079 3_3:-69454646 Msa0467960:CDS
GGCACCAATATAAATTGAAG+GGG 0.544339 3_3:+69456265 None:intergenic
CCTTCTACTACTTCTCGAGC+GGG 0.546466 3_3:+69457843 None:intergenic
TACACCAGTGGAGCCGTGGT+TGG 0.547754 3_3:-69456095 Msa0467960:CDS
GACATGTTTGAGGGTTGAGA+AGG 0.548962 3_3:-69454303 Msa0467960:three_prime_UTR
AAGGTTCTACAGAAGTTGCA+TGG 0.549750 3_3:+69452384 None:intergenic
TGAAATCCGATTAGCACTCC+CGG 0.550185 3_3:+69453405 None:intergenic
CCCCAATGACGAGAAATGGC+TGG 0.550326 3_3:-69452570 Msa0467960:three_prime_UTR
AGCGTTGTAAAAGAGGCTTT+GGG 0.552565 3_3:+69452328 None:intergenic
GGTCTATACGGACTGCCAGC+AGG 0.556407 3_3:+69456143 None:intergenic
TGAATAAAGACCCATAAGGT+GGG 0.565119 3_3:+69456243 None:intergenic
GTGAGCAGTGAGTGCTGCGA+GGG 0.566332 3_3:+69457778 None:intergenic
CCAATCAGAGCAAAAGATGC+CGG 0.573203 3_3:-69454745 Msa0467960:intron
TATAGACCATTACATCTAGC+AGG 0.573249 3_3:-69456128 Msa0467960:CDS
AACTCTCCATGTAATTGACA+CGG 0.577372 3_3:+69453505 None:intergenic
CCCCAGCTATTGGATCGCTA+TGG 0.578680 3_3:-69455793 Msa0467960:CDS
ACCAATATAAATTGAAGGGG+GGG 0.578819 3_3:+69456268 None:intergenic
TCCTTCTACTACTTCTCGAG+CGG 0.579714 3_3:+69457842 None:intergenic
AATTAGCACATATTTCACTT+GGG 0.580031 3_3:+69453060 None:intergenic
AATAATGCTTCTCAGGAGAA+GGG 0.582176 3_3:+69452803 None:intergenic
TTGAATAAAGACCCATAAGG+TGG 0.582236 3_3:+69456242 None:intergenic
GGGAATTACCTGAGACATGA+CGG 0.584892 3_3:+69457756 None:intergenic
TCCCACAAGTTGTCCCAAAG+TGG 0.587065 3_3:-69453172 Msa0467960:three_prime_UTR
TTGCACATTAAATATAGCAA+TGG 0.587511 3_3:+69454352 None:intergenic
GTATAGAATCCCTGAATACC+GGG 0.591508 3_3:-69453423 Msa0467960:three_prime_UTR
ACAACTTATGGGACAACCAA+AGG 0.595636 3_3:-69453280 Msa0467960:three_prime_UTR
GCCGTATGTCAGCGACACAA+TGG 0.595821 3_3:+69453593 None:intergenic
AGGTACAAAGGAAATAAACT+AGG 0.596332 3_3:+69454377 None:intergenic
GCGATCCAATAGCTGGGGCA+TGG 0.596562 3_3:+69455798 None:intergenic
GCAGACAGTTCAGAACCAAA+AGG 0.598611 3_3:+69454061 None:intergenic
AAATGCAACACACCCAAACC+CGG 0.600952 3_3:-69455023 Msa0467960:CDS
AATAACTAATGATATCATGA+AGG 0.601885 3_3:-69452944 Msa0467960:three_prime_UTR
TGACAACTTCTGCAACATAG+AGG 0.601965 3_3:+69454223 None:intergenic
GATTGGACATGTCCCAGTTG+CGG 0.602850 3_3:-69456974 Msa0467960:CDS
AGGGATTGCATTCATATTTG+GGG 0.605289 3_3:+69452850 None:intergenic
CATGTAATTGACACGGCTGA+CGG 0.608977 3_3:+69453512 None:intergenic
CATTAAATATAGCAATGGAT+AGG 0.608999 3_3:+69454357 None:intergenic
CCAGCCATTTCTCGTCATTG+GGG 0.609743 3_3:+69452570 None:intergenic
AAAACCTAGTATCATCAGCT+GGG 0.611109 3_3:+69453747 None:intergenic
GCATACATGCTAAAAGTGGT+AGG 0.611149 3_3:+69453916 None:intergenic
AGGGATTCTATACATATTTG+GGG 0.611454 3_3:+69453433 None:intergenic
GCAATGCTGGAAGACAACTC+TGG 0.612472 3_3:+69454279 None:intergenic
TAGGCCTGTGGAGCTTGAAG+AGG 0.613687 3_3:+69456323 None:intergenic
ACCATACACCAGTGGAGCCG+TGG 0.614260 3_3:-69456099 Msa0467960:CDS
ACAAAGACACCAAAGACCAA+AGG 0.614639 3_3:+69453374 None:intergenic
TTCATATTTGGGGACTACAG+GGG 0.616748 3_3:+69452860 None:intergenic
TGACACATATTATGAGAAGG+TGG 0.618244 3_3:+69454194 None:intergenic
CCATTGAATAAAGACCCATA+AGG 0.619596 3_3:+69456239 None:intergenic
AAATTGACATTGCCGCAACT+GGG 0.619691 3_3:+69456962 None:intergenic
ATAGCAATGGATAGGTACAA+AGG 0.623067 3_3:+69454365 None:intergenic
TTTGTTGGGTCCATACTGGG+CGG 0.624051 3_3:-69453699 Msa0467960:three_prime_UTR
TATGAGGTTCCATTTACTGG+AGG 0.626370 3_3:-69456200 Msa0467960:CDS
GGGCACCAATATAAATTGAA+GGG 0.630466 3_3:+69456264 None:intergenic
GATTAATAAATCAATTCAAG+GGG 0.631670 3_3:-69452745 Msa0467960:three_prime_UTR
AGTGGAGCCGTGGTTGGACA+CGG 0.632225 3_3:-69456089 Msa0467960:intron
GAACATACCGTGTCCAACCA+CGG 0.632372 3_3:+69456082 None:intergenic
GACACATATTATGAGAAGGT+GGG 0.633114 3_3:+69454195 None:intergenic
GAATAAAGACCCATAAGGTG+GGG 0.636716 3_3:+69456244 None:intergenic
TGGCGCATACATGCTAAAAG+TGG 0.637624 3_3:+69453912 None:intergenic
TGAGTACTAAGACATGTTTG+AGG 0.639687 3_3:-69454313 Msa0467960:three_prime_UTR
TGCGTAACTGCACCCAACCA+AGG 0.643014 3_3:-69456916 Msa0467960:CDS
AATTGACACATATTATGAGA+AGG 0.643568 3_3:+69454191 None:intergenic
TTGAAAAGAAATGAAGAACT+CGG 0.646566 3_3:-69452639 Msa0467960:three_prime_UTR
CAGTAAATGGAACCTCATAG+GGG 0.648620 3_3:+69456204 None:intergenic
TTGACTCATGTAATTGACAC+AGG 0.652301 3_3:+69452915 None:intergenic
CTACTACTTCTCGAGCGGGG+CGG 0.658678 3_3:+69457847 None:intergenic
TCAGAGCAAAAGATGCCGGA+GGG 0.658717 3_3:-69454741 Msa0467960:intron
ATCAGAGCAAAAGATGCCGG+AGG 0.659983 3_3:-69454742 Msa0467960:intron
AGTAAATGGAACCTCATAGG+GGG 0.661420 3_3:+69456205 None:intergenic
CCATAGCGATCCAATAGCTG+GGG 0.661975 3_3:+69455793 None:intergenic
GGAGCCTAAATAAGGAGCTG+CGG 0.664165 3_3:+69456295 None:intergenic
CAAAGGTATACAAGACAATG+TGG 0.665722 3_3:-69453263 Msa0467960:three_prime_UTR
TTTGTTTGTAGGTAGCCGCA+GGG 0.666364 3_3:-69457002 Msa0467960:intron
ACGGACTGCCAGCAGGAACA+CGG 0.673399 3_3:+69456150 None:intergenic
ACTCCTTTAATGCAAAATGT+GGG 0.675383 3_3:+69452515 None:intergenic
AAGTGCAACAGACAGAATTG+TGG 0.680252 3_3:-69454669 Msa0467960:CDS
GCTGCGGATGAATAGGCCTG+TGG 0.686536 3_3:+69456311 None:intergenic
GTAAATGGAACCTCATAGGG+GGG 0.695701 3_3:+69456206 None:intergenic
CTTCTACTACTTCTCGAGCG+GGG 0.700067 3_3:+69457844 None:intergenic
GGACCAGCACCATACACCAG+TGG 0.704235 3_3:-69456107 Msa0467960:CDS
GATTGGGCTTGTCCAAAATG+TGG 0.706309 3_3:-69455086 Msa0467960:CDS
ATGTCCAATCATCTTCCCTG+CGG 0.718395 3_3:+69456987 None:intergenic
GGTGAGCAGTGAGTGCTGCG+AGG 0.733204 3_3:+69457777 None:intergenic
TAGTTGAATCGTAATGTCAG+TGG 0.738018 3_3:+69453000 None:intergenic
CAGGTCCAATAGGGACACCG+AGG 0.741060 3_3:+69455770 None:intergenic
AAAAGAAATGAAGAACTCGG+CGG 0.753436 3_3:-69452636 Msa0467960:three_prime_UTR
TGTGGGTGATGAGATCATTG+GGG 0.778556 3_3:+69452532 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACATAATTAAAAATAG+AGG + chr3_3:69453478-69453497 None:intergenic 10.0%
!! TCTCTTAAAATAAATTATTT+AGG + chr3_3:69456886-69456905 None:intergenic 10.0%
!! AAGTTTATATAGTAAAAATT+TGG - chr3_3:69457237-69457256 Msa0467960:intron 10.0%
!!! TTAAATTTGTTTTTGTTTGT+AGG - chr3_3:69453199-69453218 Msa0467960:three_prime_UTR 15.0%
!! AACATTGAATATAAACATAT+TGG + chr3_3:69453352-69453371 None:intergenic 15.0%
!!! GTTTTTTTTGTGATATATAA+AGG - chr3_3:69453392-69453411 Msa0467960:three_prime_UTR 15.0%
!! ATAAGAATATAAAACAATAG+AGG - chr3_3:69453638-69453657 Msa0467960:three_prime_UTR 15.0%
!! GAAAAAAAAAGTAAGTTTAA+AGG + chr3_3:69453823-69453842 None:intergenic 15.0%
!!! TAATTTTTTCTGATTAATGA+AGG - chr3_3:69454257-69454276 Msa0467960:three_prime_UTR 15.0%
!! AAATTTAACATAACTGTAAT+AGG + chr3_3:69454360-69454379 None:intergenic 15.0%
!!! AGTTATGTTAAATTTTTTGT+TGG - chr3_3:69454365-69454384 Msa0467960:three_prime_UTR 15.0%
!!! GATATTTTTTCTTGTTTTAT+TGG - chr3_3:69454644-69454663 Msa0467960:CDS 15.0%
!! AAGAAAGTTTAGTTAAAAAT+TGG - chr3_3:69456646-69456665 Msa0467960:intron 15.0%
!! AATAATTAATGATGTCAAAT+AGG - chr3_3:69456677-69456696 Msa0467960:intron 15.0%
!! CTTAAAATAAATTATTTAGG+TGG + chr3_3:69456883-69456902 None:intergenic 15.0%
!!! TTCAAATTTTATTCATCAAT+AGG - chr3_3:69457719-69457738 Msa0467960:intron 15.0%
!! ATTATTATATTAGACAAATC+AGG + chr3_3:69457806-69457825 None:intergenic 15.0%
!!! TAAGATTCCAATTTTTTCAT+CGG + chr3_3:69452721-69452740 None:intergenic 20.0%
!! ATAAGATTCCTTAAAACAAA+TGG + chr3_3:69452820-69452839 None:intergenic 20.0%
!! AAAAACAAATTTAAATGCAC+CGG + chr3_3:69453193-69453212 None:intergenic 20.0%
!! ATTTAATGTGTCAATCAATT+GGG + chr3_3:69453556-69453575 None:intergenic 20.0%
!! AATTTAATGTGTCAATCAAT+TGG + chr3_3:69453557-69453576 None:intergenic 20.0%
!! ATTGATTGACACATTAAATT+AGG - chr3_3:69453557-69453576 Msa0467960:three_prime_UTR 20.0%
!! TTGATTGACACATTAAATTA+GGG - chr3_3:69453558-69453577 Msa0467960:three_prime_UTR 20.0%
!! TTAATGAAGGAAAATATTCA+AGG - chr3_3:69454270-69454289 Msa0467960:three_prime_UTR 20.0%
!! AATAGGATTATATCTACAAA+AGG + chr3_3:69454343-69454362 None:intergenic 20.0%
!!! ATTTTTTGTTGGTGATTATT+TGG - chr3_3:69454376-69454395 Msa0467960:three_prime_UTR 20.0%
!!! GATTATTTAAAACTTTTGTC+AGG - chr3_3:69454496-69454515 Msa0467960:CDS 20.0%
!!! CAGCATTTTTTTAAAAACAA+TGG + chr3_3:69454697-69454716 None:intergenic 20.0%
!! TTTAAAAAAATGCTGTATTC+TGG - chr3_3:69454702-69454721 Msa0467960:CDS 20.0%
!! TTATATGCATGCAAAATTTA+TGG + chr3_3:69454806-69454825 None:intergenic 20.0%
!! ATGTATTAAGAAACTTCAAT+TGG + chr3_3:69455055-69455074 None:intergenic 20.0%
!! AATCTACATAATAGATATGA+AGG + chr3_3:69455230-69455249 None:intergenic 20.0%
!!! TGGCTAATATTTTAAATTGT+TGG - chr3_3:69455304-69455323 Msa0467960:intron 20.0%
!! TATGATATAAATACAACAGT+TGG - chr3_3:69455416-69455435 Msa0467960:intron 20.0%
!! AATAACTAATGATATCATGA+AGG - chr3_3:69457268-69457287 Msa0467960:intron 20.0%
!! TCGATTAATAAATCAATTCA+AGG - chr3_3:69457465-69457484 Msa0467960:intron 20.0%
!! CGATTAATAAATCAATTCAA+GGG - chr3_3:69457466-69457485 Msa0467960:intron 20.0%
!! GATTAATAAATCAATTCAAG+GGG - chr3_3:69457467-69457486 Msa0467960:intron 20.0%
!!! TTAGATTCCTTTTATTCATA+AGG - chr3_3:69457495-69457514 Msa0467960:intron 20.0%
! ACATTCAGAAAAAGCTTAAT+TGG + chr3_3:69452604-69452623 None:intergenic 25.0%
! AACTTCGACATTAATCAAAT+TGG + chr3_3:69452655-69452674 None:intergenic 25.0%
!!! AAGATTCCAATTTTTTCATC+GGG + chr3_3:69452720-69452739 None:intergenic 25.0%
!!! TTTTAAGGAATCTTATCCAT+AGG - chr3_3:69452824-69452843 Msa0467960:three_prime_UTR 25.0%
! ATTTAAGAGAGTGATAGTTT+AGG - chr3_3:69452909-69452928 Msa0467960:three_prime_UTR 25.0%
! TTTAAGAGAGTGATAGTTTA+GGG - chr3_3:69452910-69452929 Msa0467960:three_prime_UTR 25.0%
!! TTTTATGTCTCTGTTATCTA+TGG - chr3_3:69452957-69452976 Msa0467960:three_prime_UTR 25.0%
! ATTAAAAATAGAGGAAACAG+AGG + chr3_3:69453469-69453488 None:intergenic 25.0%
! ATATAAAACAATAGAGGTCA+CGG - chr3_3:69453644-69453663 Msa0467960:three_prime_UTR 25.0%
! AAAAAGTAAGTTTAAAGGAG+AGG + chr3_3:69453818-69453837 None:intergenic 25.0%
! AAAAACCATATGTGAAACTA+TGG + chr3_3:69454837-69454856 None:intergenic 25.0%
!! ATTGCCATTTCAGATTATTA+GGG + chr3_3:69454870-69454889 None:intergenic 25.0%
!! TATTGCCATTTCAGATTATT+AGG + chr3_3:69454871-69454890 None:intergenic 25.0%
! CATTAAATATAGCAATGGAT+AGG + chr3_3:69455858-69455877 None:intergenic 25.0%
! TTGCACATTAAATATAGCAA+TGG + chr3_3:69455863-69455882 None:intergenic 25.0%
! AATTGACACATATTATGAGA+AGG + chr3_3:69456024-69456043 None:intergenic 25.0%
!!! ATTTGTTGTATTAACTGAGA+TGG - chr3_3:69456041-69456060 Msa0467960:intron 25.0%
!! TATTAACTGAGATGGTATTT+TGG - chr3_3:69456049-69456068 Msa0467960:intron 25.0%
! AGTTGTACTTAAAATGCAAA+AGG + chr3_3:69456176-69456195 None:intergenic 25.0%
! TTGGAAACTTCAATTGTTTA+TGG + chr3_3:69456214-69456233 None:intergenic 25.0%
! CTGAATAATCTAAAAACACT+TGG + chr3_3:69456233-69456252 None:intergenic 25.0%
!!! CAAGTGTTTTTAGATTATTC+AGG - chr3_3:69456231-69456250 Msa0467960:CDS 25.0%
!! CCATTAAAAAAATCTAGGAT+TGG + chr3_3:69456429-69456448 None:intergenic 25.0%
!!! CCAATCCTAGATTTTTTTAA+TGG - chr3_3:69456426-69456445 Msa0467960:intron 25.0%
! CATGACCATTAAAAAAATCT+AGG + chr3_3:69456434-69456453 None:intergenic 25.0%
! TAATAATTCTTCGCTTACAT+TGG - chr3_3:69456977-69456996 Msa0467960:CDS 25.0%
! AATTAGCACATATTTCACTT+GGG + chr3_3:69457155-69457174 None:intergenic 25.0%
! AAATTAGCACATATTTCACT+TGG + chr3_3:69457156-69457175 None:intergenic 25.0%
! ATAATCAAATAATGCTTCTC+AGG + chr3_3:69457419-69457438 None:intergenic 25.0%
! TTGAAAAGAAATGAAGAACT+CGG - chr3_3:69457573-69457592 Msa0467960:intron 25.0%
GAAACGAGATCGATTAATTA+GGG + chr3_3:69452517-69452536 None:intergenic 30.0%
AGAAACGAGATCGATTAATT+AGG + chr3_3:69452518-69452537 None:intergenic 30.0%
AATTGACAAAACCCTAATTG+AGG + chr3_3:69452545-69452564 None:intergenic 30.0%
AAAGCTTAATTGGATCGAAT+CGG + chr3_3:69452594-69452613 None:intergenic 30.0%
!!! AGATTCCAATTTTTTCATCG+GGG + chr3_3:69452719-69452738 None:intergenic 30.0%
!! ATCTTATCCATAGGTTTTGA+CGG - chr3_3:69452833-69452852 Msa0467960:three_prime_UTR 30.0%
!!! TGACGGATTTGTTGTATTTT+AGG - chr3_3:69452850-69452869 Msa0467960:three_prime_UTR 30.0%
! TCAACATATTCTGTGTTACT+TGG - chr3_3:69452989-69453008 Msa0467960:three_prime_UTR 30.0%
CATAGCAAGAATTTGTATTG+CGG + chr3_3:69453102-69453121 None:intergenic 30.0%
!! GAGTTTTGACATATGCTATT+TGG - chr3_3:69453766-69453785 Msa0467960:three_prime_UTR 30.0%
! TTTGACATATGCTATTTGGT+TGG - chr3_3:69453770-69453789 Msa0467960:three_prime_UTR 30.0%
AATTCAGTTGCTTGAATGAT+GGG + chr3_3:69454208-69454227 None:intergenic 30.0%
AAATTCAGTTGCTTGAATGA+TGG + chr3_3:69454209-69454228 None:intergenic 30.0%
ATACAAGAAAGAATGCAGAT+TGG + chr3_3:69454550-69454569 None:intergenic 30.0%
CTTATCCATAGTTTCACATA+TGG - chr3_3:69454829-69454848 Msa0467960:intron 30.0%
TGATCCCTAATAATCTGAAA+TGG - chr3_3:69454863-69454882 Msa0467960:CDS 30.0%
AAATTGCACAATCAGAAAGA+AGG + chr3_3:69454894-69454913 None:intergenic 30.0%
TTTCTGATTGTGCAATTTGA+TGG - chr3_3:69454896-69454915 Msa0467960:intron 30.0%
TTAACTAAGTATAGCAAACC+TGG + chr3_3:69455015-69455034 None:intergenic 30.0%
TTGCATCTATACGGAAAAAT+GGG + chr3_3:69455095-69455114 None:intergenic 30.0%
! AAATTGACGTTACCACATTT+TGG + chr3_3:69455141-69455160 None:intergenic 30.0%
TCATCCATGCTTATAATCTA+TGG - chr3_3:69455284-69455303 Msa0467960:intron 30.0%
TTAGCCATAGATTATAAGCA+TGG + chr3_3:69455291-69455310 None:intergenic 30.0%
TGAAGGTTAGCAAATTGAAA+AGG + chr3_3:69455645-69455664 None:intergenic 30.0%
TCTGTTGCAACAATAAATGA+AGG + chr3_3:69455662-69455681 None:intergenic 30.0%
TTTATTGTTGCAACAGAGAT+TGG - chr3_3:69455665-69455684 Msa0467960:intron 30.0%
AACAAAAGAATCCAAATGAC+AGG + chr3_3:69455795-69455814 None:intergenic 30.0%
AGGTACAAAGGAAATAAACT+AGG + chr3_3:69455838-69455857 None:intergenic 30.0%
ATCTTTATGCCAGAAAAATC+TGG + chr3_3:69456106-69456125 None:intergenic 30.0%
!!! TCCAGTTTTAAGTTTCCTTT+TGG - chr3_3:69456136-69456155 Msa0467960:CDS 30.0%
ACCAAAAGGAAACTTAAAAC+TGG + chr3_3:69456140-69456159 None:intergenic 30.0%
!!! ACATTTCAGTTTTAGCTTGT+TGG - chr3_3:69456256-69456275 Msa0467960:CDS 30.0%
AGGGATTCTATACATATTTG+GGG + chr3_3:69456782-69456801 None:intergenic 30.0%
CAGGGATTCTATACATATTT+GGG + chr3_3:69456783-69456802 None:intergenic 30.0%
TCAGGGATTCTATACATATT+TGG + chr3_3:69456784-69456803 None:intergenic 30.0%
! GTTATTTGAACCACCATTTT+TGG - chr3_3:69456909-69456928 Msa0467960:CDS 30.0%
!! ACCATTTTTGGACAACTTAT+GGG - chr3_3:69456921-69456940 Msa0467960:CDS 30.0%
CACATTGTCTTGTATATCTT+TGG - chr3_3:69457014-69457033 Msa0467960:intron 30.0%
GTTATTTGAACATCCACTTT+GGG + chr3_3:69457056-69457075 None:intergenic 30.0%
! TGTTATTTGAACATCCACTT+TGG + chr3_3:69457057-69457076 None:intergenic 30.0%
TTTCAGATTAGAGAGAATGA+TGG + chr3_3:69457103-69457122 None:intergenic 30.0%
! TGCTCTTTTCTACTTCTATT+AGG - chr3_3:69457329-69457348 Msa0467960:intron 30.0%
GTGATGATACAAGTAATTCA+GGG + chr3_3:69457384-69457403 None:intergenic 30.0%
TGTGATGATACAAGTAATTC+AGG + chr3_3:69457385-69457404 None:intergenic 30.0%
GTGAACACCTTATGAATAAA+AGG + chr3_3:69457505-69457524 None:intergenic 30.0%
!! AATGGCTGGACATTTTAAAA+AGG - chr3_3:69457656-69457675 Msa0467960:intron 30.0%
ACTCCTTTAATGCAAAATGT+GGG + chr3_3:69457700-69457719 None:intergenic 30.0%
AACTCCTTTAATGCAAAATG+TGG + chr3_3:69457701-69457720 None:intergenic 30.0%
TTCGAAAGCGAAATTGAAGA+AGG + chr3_3:69452494-69452513 None:intergenic 35.0%
AAGCTTAATTGGATCGAATC+GGG + chr3_3:69452593-69452612 None:intergenic 35.0%
!!! ATTCCAATTTTTTCATCGGG+GGG + chr3_3:69452717-69452736 None:intergenic 35.0%
!!! GATTCCAATTTTTTCATCGG+GGG + chr3_3:69452718-69452737 None:intergenic 35.0%
!!! GTGCGTTACCATTTGTTTTA+AGG - chr3_3:69452809-69452828 Msa0467960:three_prime_UTR 35.0%
AACAAATCCGTCAAAACCTA+TGG + chr3_3:69452843-69452862 None:intergenic 35.0%
ATAGTGGTGAGTGTGAAAAT+AGG + chr3_3:69453071-69453090 None:intergenic 35.0%
GCAATGTCAATTTCTCTTTC+AGG - chr3_3:69453260-69453279 Msa0467960:three_prime_UTR 35.0%
CTTACAGAATTATGATCAGC+AGG + chr3_3:69453322-69453341 None:intergenic 35.0%
AAAATAGAGGAAACAGAGGA+TGG + chr3_3:69453465-69453484 None:intergenic 35.0%
! ATATGCTATTTGGTTGGACA+TGG - chr3_3:69453776-69453795 Msa0467960:three_prime_UTR 35.0%
! TATGCTATTTGGTTGGACAT+GGG - chr3_3:69453777-69453796 Msa0467960:three_prime_UTR 35.0%
ACCAATATAAATTGAAGGGG+GGG + chr3_3:69453947-69453966 None:intergenic 35.0%
CACCAATATAAATTGAAGGG+GGG + chr3_3:69453948-69453967 None:intergenic 35.0%
GCACCAATATAAATTGAAGG+GGG + chr3_3:69453949-69453968 None:intergenic 35.0%
GGCACCAATATAAATTGAAG+GGG + chr3_3:69453950-69453969 None:intergenic 35.0%
GGGCACCAATATAAATTGAA+GGG + chr3_3:69453951-69453970 None:intergenic 35.0%
TGAATAAAGACCCATAAGGT+GGG + chr3_3:69453972-69453991 None:intergenic 35.0%
TTGAATAAAGACCCATAAGG+TGG + chr3_3:69453973-69453992 None:intergenic 35.0%
CCATTGAATAAAGACCCATA+AGG + chr3_3:69453976-69453995 None:intergenic 35.0%
CCTTATGGGTCTTTATTCAA+TGG - chr3_3:69453973-69453992 Msa0467960:three_prime_UTR 35.0%
GCTAGATGTAATGGTCTATA+CGG + chr3_3:69454084-69454103 None:intergenic 35.0%
TATAGACCATTACATCTAGC+AGG - chr3_3:69454084-69454103 Msa0467960:three_prime_UTR 35.0%
! TTGCTTGAATGATGGGAAAA+GGG + chr3_3:69454201-69454220 None:intergenic 35.0%
!! TTTGTTGGTGATTATTTGGC+AGG - chr3_3:69454380-69454399 Msa0467960:three_prime_UTR 35.0%
AATATAGCTTCGTAAAGCCT+AGG + chr3_3:69454762-69454781 None:intergenic 35.0%
GATGACAAGTCTCAGAAAAA+GGG - chr3_3:69454988-69455007 Msa0467960:intron 35.0%
TGCATCTATACGGAAAAATG+GGG + chr3_3:69455094-69455113 None:intergenic 35.0%
GTTGCATCTATACGGAAAAA+TGG + chr3_3:69455096-69455115 None:intergenic 35.0%
!! GGATATGATTATTTTGCTGC+AGG - chr3_3:69455325-69455344 Msa0467960:intron 35.0%
AGTGTTCTTATCAGACTTTG+AGG + chr3_3:69455351-69455370 None:intergenic 35.0%
! TTTTGATCTGGAGATGATGA+GGG + chr3_3:69455600-69455619 None:intergenic 35.0%
!! ATTTTGATCTGGAGATGATG+AGG + chr3_3:69455601-69455620 None:intergenic 35.0%
ATCTCCAGATCAAAATGAAC+AGG - chr3_3:69455605-69455624 Msa0467960:intron 35.0%
!! CAAACCTGTTCATTTTGATC+TGG + chr3_3:69455612-69455631 None:intergenic 35.0%
ATAGCAATGGATAGGTACAA+AGG + chr3_3:69455850-69455869 None:intergenic 35.0%
AAACATGTCTTAGTACTCAC+TGG + chr3_3:69455898-69455917 None:intergenic 35.0%
TGAGTACTAAGACATGTTTG+AGG - chr3_3:69455899-69455918 Msa0467960:intron 35.0%
GAGTACTAAGACATGTTTGA+GGG - chr3_3:69455900-69455919 Msa0467960:intron 35.0%
GACACATATTATGAGAAGGT+GGG + chr3_3:69456020-69456039 None:intergenic 35.0%
TGACACATATTATGAGAAGG+TGG + chr3_3:69456021-69456040 None:intergenic 35.0%
!!! AGATGGTATTTTGGTCTTTG+TGG - chr3_3:69456058-69456077 Msa0467960:intron 35.0%
!! ACTGCTTTTAGTTAGTTGTG+TGG - chr3_3:69456352-69456371 Msa0467960:intron 35.0%
AAAACCTAGTATCATCAGCT+GGG + chr3_3:69456468-69456487 None:intergenic 35.0%
AAAAACCTAGTATCATCAGC+TGG + chr3_3:69456469-69456488 None:intergenic 35.0%
! AGCTGATGATACTAGGTTTT+TGG - chr3_3:69456468-69456487 Msa0467960:intron 35.0%
! GCTGATGATACTAGGTTTTT+GGG - chr3_3:69456469-69456488 Msa0467960:intron 35.0%
!! ATGATACTAGGTTTTTGGGA+GGG - chr3_3:69456473-69456492 Msa0467960:intron 35.0%
AATCTTTGTGAGTGCTTTGT+TGG - chr3_3:69456498-69456517 Msa0467960:intron 35.0%
! ATCTTTGTGAGTGCTTTGTT+GGG - chr3_3:69456499-69456518 Msa0467960:intron 35.0%
AATCTTTGTGAGTGCTTTGT+TGG - chr3_3:69456498-69456517 Msa0467960:intron 35.0%
! ATCTTTGTGAGTGCTTTGTT+GGG - chr3_3:69456499-69456518 Msa0467960:intron 35.0%
ACATAGATTAGCACTCAGTA+TGG + chr3_3:69456567-69456586 None:intergenic 35.0%
ACACAATGGGAAACAGAATA+TGG + chr3_3:69456608-69456627 None:intergenic 35.0%
AACTCTCCATGTAATTGACA+CGG + chr3_3:69456710-69456729 None:intergenic 35.0%
GAGAGTTAAAATGCACTCTT+GGG - chr3_3:69456723-69456742 Msa0467960:intron 35.0%
TACTTGCACTTTACCTGTAT+AGG - chr3_3:69456756-69456775 Msa0467960:intron 35.0%
TGTATAGAATCCCTGAATAC+CGG - chr3_3:69456788-69456807 Msa0467960:intron 35.0%
CATAAGTTGTCCAAAAATGG+TGG + chr3_3:69456922-69456941 None:intergenic 35.0%
!! CACCATTTTTGGACAACTTA+TGG - chr3_3:69456920-69456939 Msa0467960:CDS 35.0%
TCCCATAAGTTGTCCAAAAA+TGG + chr3_3:69456925-69456944 None:intergenic 35.0%
CACATTGTCTTGTATACCTT+TGG + chr3_3:69456951-69456970 None:intergenic 35.0%
! CAAAGGTATACAAGACAATG+TGG - chr3_3:69456949-69456968 Msa0467960:CDS 35.0%
! ATATTTCACTTGGGTGTCAT+TGG + chr3_3:69457146-69457165 None:intergenic 35.0%
TAGTTGAATCGTAATGTCAG+TGG + chr3_3:69457215-69457234 None:intergenic 35.0%
ACTAATGATATCATGAAGGC+TGG - chr3_3:69457272-69457291 Msa0467960:intron 35.0%
ATTCATATTTGGGGACTACA+GGG + chr3_3:69457356-69457375 None:intergenic 35.0%
AGGGATTGCATTCATATTTG+GGG + chr3_3:69457365-69457384 None:intergenic 35.0%
CAGGGATTGCATTCATATTT+GGG + chr3_3:69457366-69457385 None:intergenic 35.0%
TCAGGGATTGCATTCATATT+TGG + chr3_3:69457367-69457386 None:intergenic 35.0%
AATAATGCTTCTCAGGAGAA+GGG + chr3_3:69457412-69457431 None:intergenic 35.0%
AAATAATGCTTCTCAGGAGA+AGG + chr3_3:69457413-69457432 None:intergenic 35.0%
AAAAGAAATGAAGAACTCGG+CGG - chr3_3:69457576-69457595 Msa0467960:intron 35.0%
! TCACCCACATTTTGCATTAA+AGG - chr3_3:69457694-69457713 Msa0467960:intron 35.0%
CCTCATATTGTATGCTTCAA+AGG + chr3_3:69457850-69457869 None:intergenic 35.0%
!! CCTTTGAAGCATACAATATG+AGG - chr3_3:69457847-69457866 Msa0467960:five_prime_UTR 35.0%
GACAAAACCCTAATTGAGGT+GGG + chr3_3:69452541-69452560 None:intergenic 40.0%
TGACAAAACCCTAATTGAGG+TGG + chr3_3:69452542-69452561 None:intergenic 40.0%
GGGGGGTTAATTAAGCAAAA+AGG + chr3_3:69452700-69452719 None:intergenic 40.0%
TAACCCCCCGATGAAAAAAT+TGG - chr3_3:69452711-69452730 Msa0467960:three_prime_UTR 40.0%
! TCAATCTGTTTTGCCTTTGC+AGG - chr3_3:69452741-69452760 Msa0467960:three_prime_UTR 40.0%
TTCCTGTTATCAACCTGCAA+AGG + chr3_3:69452757-69452776 None:intergenic 40.0%
TATTGCGGAACGTAACATAG+TGG + chr3_3:69453087-69453106 None:intergenic 40.0%
AAATTGACATTGCCGCAACT+GGG + chr3_3:69453253-69453272 None:intergenic 40.0%
TGTTCATCGTTGTGTCTCTT+GGG - chr3_3:69453522-69453541 Msa0467960:three_prime_UTR 40.0%
! GGGGCACCAATATAAATTGA+AGG + chr3_3:69453952-69453971 None:intergenic 40.0%
GAATAAAGACCCATAAGGTG+GGG + chr3_3:69453971-69453990 None:intergenic 40.0%
AGTAAATGGAACCTCATAGG+GGG + chr3_3:69454010-69454029 None:intergenic 40.0%
CAGTAAATGGAACCTCATAG+GGG + chr3_3:69454011-69454030 None:intergenic 40.0%
CCAGTAAATGGAACCTCATA+GGG + chr3_3:69454012-69454031 None:intergenic 40.0%
TCCAGTAAATGGAACCTCAT+AGG + chr3_3:69454013-69454032 None:intergenic 40.0%
TATGAGGTTCCATTTACTGG+AGG - chr3_3:69454012-69454031 Msa0467960:three_prime_UTR 40.0%
TCAGCCTATCAGTACAGTTA+TGG - chr3_3:69454036-69454055 Msa0467960:three_prime_UTR 40.0%
! GCTTCCATAACTGTACTGAT+AGG + chr3_3:69454043-69454062 None:intergenic 40.0%
! CTGACTGAATGATGGGAAAA+GGG + chr3_3:69454162-69454181 None:intergenic 40.0%
CATTCAGCTGACTGAATGAT+GGG + chr3_3:69454169-69454188 None:intergenic 40.0%
! TGAATGATGGGAAAAGGGAA+AGG + chr3_3:69454157-69454176 None:intergenic 40.0%
! GTTGCTTGAATGATGGGAAA+AGG + chr3_3:69454202-69454221 None:intergenic 40.0%
! TTGGTGATTATTTGGCAGGT+GGG - chr3_3:69454384-69454403 Msa0467960:three_prime_UTR 40.0%
CTAACTGCAGAACGTGATTA+AGG + chr3_3:69454588-69454607 None:intergenic 40.0%
CTTAATCACGTTCTGCAGTT+AGG - chr3_3:69454586-69454605 Msa0467960:CDS 40.0%
!! TCTTCTCTGAAGCATCAGTA+TGG - chr3_3:69454667-69454686 Msa0467960:CDS 40.0%
ACAAGTACGAGTATGGTACT+GGG + chr3_3:69454735-69454754 None:intergenic 40.0%
TTGTCATCGCGAAAAAATCC+TGG + chr3_3:69454976-69454995 None:intergenic 40.0%
CGATGACAAGTCTCAGAAAA+AGG - chr3_3:69454987-69455006 Msa0467960:intron 40.0%
GCATCTATACGGAAAAATGG+GGG + chr3_3:69455093-69455112 None:intergenic 40.0%
TGTCACGAGTTGCATCTATA+CGG + chr3_3:69455104-69455123 None:intergenic 40.0%
ATGCAACTCGTGACAATGAT+TGG - chr3_3:69455109-69455128 Msa0467960:intron 40.0%
TGCAACTCGTGACAATGATT+GGG - chr3_3:69455110-69455129 Msa0467960:intron 40.0%
ACAATTCTGTCTGTTGCACT+TGG + chr3_3:69455544-69455563 None:intergenic 40.0%
AAGTGCAACAGACAGAATTG+TGG - chr3_3:69455543-69455562 Msa0467960:intron 40.0%
CTCTTATGCTTCCTGTCATT+TGG - chr3_3:69455781-69455800 Msa0467960:CDS 40.0%
TGACAACTTCTGCAACATAG+AGG + chr3_3:69455992-69456011 None:intergenic 40.0%
! ATGTGTCAGCCAGATTTTTC+TGG - chr3_3:69456094-69456113 Msa0467960:CDS 40.0%
TCTGGCATAAAGATTGTTGC+AGG - chr3_3:69456112-69456131 Msa0467960:CDS 40.0%
GCATACATGCTAAAAGTGGT+AGG + chr3_3:69456299-69456318 None:intergenic 40.0%
AGCAGTGACTCGAAAGTAAA+CGG + chr3_3:69456338-69456357 None:intergenic 40.0%
!! GATGATACTAGGTTTTTGGG+AGG - chr3_3:69456472-69456491 Msa0467960:intron 40.0%
GGAGAGTTAAAATGCACTCT+TGG - chr3_3:69456722-69456741 Msa0467960:intron 40.0%
! TACATATTTGGGGCCTATAC+AGG + chr3_3:69456772-69456791 None:intergenic 40.0%
GTATAGAATCCCTGAATACC+GGG - chr3_3:69456789-69456808 Msa0467960:intron 40.0%
GTGCTAATCGGATTTCACTT+TGG - chr3_3:69456813-69456832 Msa0467960:intron 40.0%
ACAAAGACACCAAAGACCAA+AGG + chr3_3:69456841-69456860 None:intergenic 40.0%
ACAACTTATGGGACAACCAA+AGG - chr3_3:69456932-69456951 Msa0467960:CDS 40.0%
TTCATATTTGGGGACTACAG+GGG + chr3_3:69457355-69457374 None:intergenic 40.0%
CATTCATATTTGGGGACTAC+AGG + chr3_3:69457357-69457376 None:intergenic 40.0%
! AGAAGTCACTTGTTGCACTT+TGG - chr3_3:69457609-69457628 Msa0467960:intron 40.0%
!! TTGTTGCACTTTGGTCTTGA+AGG - chr3_3:69457618-69457637 Msa0467960:intron 40.0%
ATGTGGGTGATGAGATCATT+GGG + chr3_3:69457684-69457703 None:intergenic 40.0%
AATGTGGGTGATGAGATCAT+TGG + chr3_3:69457685-69457704 None:intergenic 40.0%
GCATTAAGCCTGACTACAAT+CGG - chr3_3:69457775-69457794 Msa0467960:five_prime_UTR 40.0%
AAGGTTCTACAGAAGTTGCA+TGG + chr3_3:69457831-69457850 None:intergenic 40.0%
AGCGTTGTAAAAGAGGCTTT+GGG + chr3_3:69457887-69457906 None:intergenic 40.0%
ATCAAGCAGCGTTGTAAAAG+AGG + chr3_3:69457894-69457913 None:intergenic 40.0%
TCCTTCTACTACTTCTCGAG+CGG + chr3_3:69452373-69452392 None:intergenic 45.0%
GGGAATTACCTGAGACATGA+CGG + chr3_3:69452459-69452478 None:intergenic 45.0%
GAAGAAGGCGATGAATCGAA+GGG + chr3_3:69452479-69452498 None:intergenic 45.0%
TGAAGAAGGCGATGAATCGA+AGG + chr3_3:69452480-69452499 None:intergenic 45.0%
TCGTTTCTCCCACCTCAATT+AGG - chr3_3:69452530-69452549 Msa0467960:three_prime_UTR 45.0%
CGTTTCTCCCACCTCAATTA+GGG - chr3_3:69452531-69452550 Msa0467960:three_prime_UTR 45.0%
!! TGCCTTTGCAGGTTGATAAC+AGG - chr3_3:69452752-69452771 Msa0467960:three_prime_UTR 45.0%
TAAGTCCCTTTCCTCTAGCA+AGG - chr3_3:69453150-69453169 Msa0467960:three_prime_UTR 45.0%
AAGTCCCTTTCCTCTAGCAA+GGG - chr3_3:69453151-69453170 Msa0467960:three_prime_UTR 45.0%
ATATCAGATCCCCTTGCTAG+AGG + chr3_3:69453164-69453183 None:intergenic 45.0%
TCTAGCAAGGGGATCTGATA+TGG - chr3_3:69453163-69453182 Msa0467960:three_prime_UTR 45.0%
!! TTTTGTTTGTAGGTAGCCGC+AGG - chr3_3:69453209-69453228 Msa0467960:three_prime_UTR 45.0%
TTTGTTTGTAGGTAGCCGCA+GGG - chr3_3:69453210-69453229 Msa0467960:three_prime_UTR 45.0%
ATGTCCAATCATCTTCCCTG+CGG + chr3_3:69453228-69453247 None:intergenic 45.0%
GAAATTGACATTGCCGCAAC+TGG + chr3_3:69453254-69453273 None:intergenic 45.0%
GAATTATGATCAGCAGGCCT+TGG + chr3_3:69453316-69453335 None:intergenic 45.0%
ACAGAGGATGGACAATGCAA+AGG + chr3_3:69453453-69453472 None:intergenic 45.0%
CTGTTCATCGTTGTGTCTCT+TGG - chr3_3:69453521-69453540 Msa0467960:three_prime_UTR 45.0%
ATAAGGAGCTGCGGATGAAT+AGG + chr3_3:69453911-69453930 None:intergenic 45.0%
! TCATCCGCAGCTCCTTATTT+AGG - chr3_3:69453913-69453932 Msa0467960:three_prime_UTR 45.0%
GCCCCCCCTTCAATTTATAT+TGG - chr3_3:69453943-69453962 Msa0467960:three_prime_UTR 45.0%
! TATATTGGTGCCCCACCTTA+TGG - chr3_3:69453958-69453977 Msa0467960:three_prime_UTR 45.0%
! ATATTGGTGCCCCACCTTAT+GGG - chr3_3:69453959-69453978 Msa0467960:three_prime_UTR 45.0%
GTAAATGGAACCTCATAGGG+GGG + chr3_3:69454009-69454028 None:intergenic 45.0%
CCCTATGAGGTTCCATTTAC+TGG - chr3_3:69454009-69454028 Msa0467960:three_prime_UTR 45.0%
TAGGCTGATCCTCCAGTAAA+TGG + chr3_3:69454024-69454043 None:intergenic 45.0%
! GCTGACTGAATGATGGGAAA+AGG + chr3_3:69454163-69454182 None:intergenic 45.0%
CCATTCAGCTGACTGAATGA+TGG + chr3_3:69454170-69454189 None:intergenic 45.0%
CCATCATTCAGTCAGCTGAA+TGG - chr3_3:69454167-69454186 Msa0467960:three_prime_UTR 45.0%
!! GTTGGTGATTATTTGGCAGG+TGG - chr3_3:69454383-69454402 Msa0467960:three_prime_UTR 45.0%
TTATCCCATACCATTGCTCC+AGG + chr3_3:69454464-69454483 None:intergenic 45.0%
CACAAGTACGAGTATGGTAC+TGG + chr3_3:69454736-69454755 None:intergenic 45.0%
AGGATGCACAAGTACGAGTA+TGG + chr3_3:69454742-69454761 None:intergenic 45.0%
TACTCGTACTTGTGCATCCT+AGG - chr3_3:69454742-69454761 Msa0467960:intron 45.0%
TAGTTAACCCTTGCCTTAGC+AGG - chr3_3:69454942-69454961 Msa0467960:intron 45.0%
AGTTAACCCTTGCCTTAGCA+GGG - chr3_3:69454943-69454962 Msa0467960:intron 45.0%
AAGTCTCAGAAAAAGGGACC+AGG - chr3_3:69454994-69455013 Msa0467960:intron 45.0%
GATTGGGCTTGTCCAAAATG+TGG - chr3_3:69455126-69455145 Msa0467960:intron 45.0%
AAATGCAACACACCCAAACC+CGG - chr3_3:69455189-69455208 Msa0467960:intron 45.0%
GATATGAAGGCAGCATACCT+GGG + chr3_3:69455217-69455236 None:intergenic 45.0%
AGATATGAAGGCAGCATACC+TGG + chr3_3:69455218-69455237 None:intergenic 45.0%
CCAATCAGAGCAAAAGATGC+CGG - chr3_3:69455467-69455486 Msa0467960:intron 45.0%
!! TGTTGCACTTGGTTCGGAAT+GGG + chr3_3:69455533-69455552 None:intergenic 45.0%
TCTGTCTGTTGCACTTGGTT+CGG + chr3_3:69455539-69455558 None:intergenic 45.0%
GACATGTTTGAGGGTTGAGA+AGG - chr3_3:69455909-69455928 Msa0467960:intron 45.0%
TCTTCCAGCATTGCTCAGTT+TGG - chr3_3:69455942-69455961 Msa0467960:intron 45.0%
CTTCCAGCATTGCTCAGTTT+GGG - chr3_3:69455943-69455962 Msa0467960:intron 45.0%
GCAGACAGTTCAGAACCAAA+AGG + chr3_3:69456154-69456173 None:intergenic 45.0%
TGGCGCATACATGCTAAAAG+TGG + chr3_3:69456303-69456322 None:intergenic 45.0%
GTAAACGGTTTCTGTGATGC+TGG + chr3_3:69456323-69456342 None:intergenic 45.0%
! TGCTTTGTTGGGTCCATACT+GGG - chr3_3:69456510-69456529 Msa0467960:intron 45.0%
CATGTAATTGACACGGCTGA+CGG + chr3_3:69456703-69456722 None:intergenic 45.0%
ATTAGCACTCCCGGTATTCA+GGG + chr3_3:69456801-69456820 None:intergenic 45.0%
!! TGAATACCGGGAGTGCTAAT+CGG - chr3_3:69456801-69456820 Msa0467960:intron 45.0%
TGAAATCCGATTAGCACTCC+CGG + chr3_3:69456810-69456829 None:intergenic 45.0%
!! GGATTTCACTTTGGTGCCTT+TGG - chr3_3:69456822-69456841 Msa0467960:intron 45.0%
!! ACTTTGGTGCCTTTGGTCTT+TGG - chr3_3:69456829-69456848 Msa0467960:intron 45.0%
!! TCCACTTTGGGACAACTTGT+GGG + chr3_3:69457044-69457063 None:intergenic 45.0%
!! ATCCACTTTGGGACAACTTG+TGG + chr3_3:69457045-69457064 None:intergenic 45.0%
!!! TCATTGGCACTTGGTGCTTT+TGG + chr3_3:69457130-69457149 None:intergenic 45.0%
TCCAGCCATTTCTCGTCATT+GGG + chr3_3:69457646-69457665 None:intergenic 45.0%
TGTGGGTGATGAGATCATTG+GGG + chr3_3:69457683-69457702 None:intergenic 45.0%
CAGCGTTGTAAAAGAGGCTT+TGG + chr3_3:69457888-69457907 None:intergenic 45.0%
!!! ATTGAATTTAATATATTTTA+AGG - chr3_3:69452881-69452900 Msa0467960:three_prime_UTR 5.0%
CTTCTACTACTTCTCGAGCG+GGG + chr3_3:69452371-69452390 None:intergenic 50.0%
CCTTCTACTACTTCTCGAGC+GGG + chr3_3:69452372-69452391 None:intergenic 50.0%
AGTCCCTTTCCTCTAGCAAG+GGG - chr3_3:69453152-69453171 Msa0467960:three_prime_UTR 50.0%
GATCCCCTTGCTAGAGGAAA+GGG + chr3_3:69453158-69453177 None:intergenic 50.0%
AGATCCCCTTGCTAGAGGAA+AGG + chr3_3:69453159-69453178 None:intergenic 50.0%
GGGGATCTGATATGGTTCTC+CGG - chr3_3:69453171-69453190 Msa0467960:three_prime_UTR 50.0%
GATTGGACATGTCCCAGTTG+CGG - chr3_3:69453238-69453257 Msa0467960:three_prime_UTR 50.0%
GGTGCAGTTACGCATATTGC+AGG + chr3_3:69453290-69453309 None:intergenic 50.0%
ATGATCAGCAGGCCTTGGTT+GGG + chr3_3:69453311-69453330 None:intergenic 50.0%
TATGATCAGCAGGCCTTGGT+TGG + chr3_3:69453312-69453331 None:intergenic 50.0%
GAGGCTTCACAGCAGATTTC+TGG + chr3_3:69453873-69453892 None:intergenic 50.0%
GGAGCCTAAATAAGGAGCTG+CGG + chr3_3:69453920-69453939 None:intergenic 50.0%
! ATAAATTGAAGGGGGGGCGT+TGG + chr3_3:69453941-69453960 None:intergenic 50.0%
GCTGGTCCTGCTAGATGTAA+TGG + chr3_3:69454093-69454112 None:intergenic 50.0%
GAACATACCGTGTCCAACCA+CGG + chr3_3:69454133-69454152 None:intergenic 50.0%
ATATGCCATGCCCCAGCTAT+TGG - chr3_3:69454409-69454428 Msa0467960:exon 50.0%
CCATAGCGATCCAATAGCTG+GGG + chr3_3:69454422-69454441 None:intergenic 50.0%
GCCATAGCGATCCAATAGCT+GGG + chr3_3:69454423-69454442 None:intergenic 50.0%
CTATTGGATCGCTATGGCCT+CGG - chr3_3:69454425-69454444 Msa0467960:CDS 50.0%
CCATTGCTCCAGGTCCAATA+GGG + chr3_3:69454454-69454473 None:intergenic 50.0%
ACCATTGCTCCAGGTCCAAT+AGG + chr3_3:69454455-69454474 None:intergenic 50.0%
TTGGACCTGGAGCAATGGTA+TGG - chr3_3:69454456-69454475 Msa0467960:CDS 50.0%
TGGACCTGGAGCAATGGTAT+GGG - chr3_3:69454457-69454476 Msa0467960:CDS 50.0%
! CCGGCATCTTTTGCTCTGAT+TGG + chr3_3:69455470-69455489 None:intergenic 50.0%
ATCAGAGCAAAAGATGCCGG+AGG - chr3_3:69455470-69455489 Msa0467960:intron 50.0%
TCAGAGCAAAAGATGCCGGA+GGG - chr3_3:69455471-69455490 Msa0467960:intron 50.0%
!! CTGTTGCACTTGGTTCGGAA+TGG + chr3_3:69455534-69455553 None:intergenic 50.0%
! GGAGATTTTTCCGACTCAGC+TGG + chr3_3:69455579-69455598 None:intergenic 50.0%
GCAATGCTGGAAGACAACTC+TGG + chr3_3:69455936-69455955 None:intergenic 50.0%
ACACCCAAACTGAGCAATGC+TGG + chr3_3:69455949-69455968 None:intergenic 50.0%
AGCACCCAGCTGATGATACT+AGG - chr3_3:69456461-69456480 Msa0467960:intron 50.0%
! GTGCTTTGTTGGGTCCATAC+TGG - chr3_3:69456509-69456528 Msa0467960:intron 50.0%
TTTGTTGGGTCCATACTGGG+CGG - chr3_3:69456513-69456532 Msa0467960:intron 50.0%
! AAAGATTAGCCCGCCCAGTA+TGG + chr3_3:69456526-69456545 None:intergenic 50.0%
CCGTATGTCAGCGACACAAT+GGG + chr3_3:69456621-69456640 None:intergenic 50.0%
! CCCATTGTGTCGCTGACATA+CGG - chr3_3:69456618-69456637 Msa0467960:intron 50.0%
CGTCAGCCGTGTCAATTACA+TGG - chr3_3:69456701-69456720 Msa0467960:intron 50.0%
GATTAGCACTCCCGGTATTC+AGG + chr3_3:69456802-69456821 None:intergenic 50.0%
GGTGGAGAGAGAAGAGAGAT+AGG + chr3_3:69456865-69456884 None:intergenic 50.0%
TCCCACAAGTTGTCCCAAAG+TGG - chr3_3:69457040-69457059 Msa0467960:intron 50.0%
!! ACTTGGGTGTCATTGGCACT+TGG + chr3_3:69457139-69457158 None:intergenic 50.0%
TAATGTCAGTGGTGCGCAGT+AGG + chr3_3:69457204-69457223 None:intergenic 50.0%
AGGTCCCCAATGACGAGAAA+TGG - chr3_3:69457638-69457657 Msa0467960:intron 50.0%
CCAGCCATTTCTCGTCATTG+GGG + chr3_3:69457645-69457664 None:intergenic 50.0%
GTCCAGCCATTTCTCGTCAT+TGG + chr3_3:69457647-69457666 None:intergenic 50.0%
! AGGCTATGCCGATTGTAGTC+AGG + chr3_3:69457786-69457805 None:intergenic 50.0%
CCCGCTCGAGAAGTAGTAGA+AGG - chr3_3:69452369-69452388 Msa0467960:three_prime_UTR 55.0%
ACTGCTCACCGTCATGTCTC+AGG - chr3_3:69452448-69452467 Msa0467960:three_prime_UTR 55.0%
! TGGTAACGCACCATCAGTCC+TGG + chr3_3:69452800-69452819 None:intergenic 55.0%
GTAGCCGCAGGGAAGATGAT+TGG - chr3_3:69453221-69453240 Msa0467960:three_prime_UTR 55.0%
TGCGTAACTGCACCCAACCA+AGG - chr3_3:69453296-69453315 Msa0467960:three_prime_UTR 55.0%
GAAGCCTCTTCAAGCTCCAC+AGG - chr3_3:69453885-69453904 Msa0467960:three_prime_UTR 55.0%
TAGGCCTGTGGAGCTTGAAG+AGG + chr3_3:69453892-69453911 None:intergenic 55.0%
!! GGGGCGTTGGAGCCTAAATA+AGG + chr3_3:69453928-69453947 None:intergenic 55.0%
ATCACCAGTTCCCCCCTATG+AGG - chr3_3:69453996-69454015 Msa0467960:three_prime_UTR 55.0%
TATGGAAGCCGTGTTCCTGC+TGG - chr3_3:69454054-69454073 Msa0467960:three_prime_UTR 55.0%
CCCCAGCTATTGGATCGCTA+TGG - chr3_3:69454419-69454438 Msa0467960:CDS 55.0%
GGCCATAGCGATCCAATAGC+TGG + chr3_3:69454424-69454443 None:intergenic 55.0%
!! TATGGCCTCGGTGTCCCTAT+TGG - chr3_3:69454437-69454456 Msa0467960:CDS 55.0%
CCCTATTGGACCTGGAGCAA+TGG - chr3_3:69454451-69454470 Msa0467960:CDS 55.0%
CTAGTGCCCTGCTAAGGCAA+GGG + chr3_3:69454952-69454971 None:intergenic 55.0%
CATACCTGGGATCCGGGTTT+GGG + chr3_3:69455204-69455223 None:intergenic 55.0%
AAGGCAGCATACCTGGGATC+CGG + chr3_3:69455211-69455230 None:intergenic 55.0%
AAAAGATGCCGGAGGGAAGC+TGG - chr3_3:69455478-69455497 Msa0467960:intron 55.0%
TCACACTTCCAGCTTCCCTC+CGG + chr3_3:69455489-69455508 None:intergenic 55.0%
TGCTGACAAGCCAGCTGAGT+CGG - chr3_3:69455566-69455585 Msa0467960:intron 55.0%
TTGTTGGGTCCATACTGGGC+GGG - chr3_3:69456514-69456533 Msa0467960:intron 55.0%
GCCGTATGTCAGCGACACAA+TGG + chr3_3:69456622-69456641 None:intergenic 55.0%
CCCCAATGACGAGAAATGGC+TGG - chr3_3:69457642-69457661 Msa0467960:intron 55.0%
CTACTACTTCTCGAGCGGGG+CGG + chr3_3:69452368-69452387 None:intergenic 60.0%
! GTGAGCAGTGAGTGCTGCGA+GGG + chr3_3:69452437-69452456 None:intergenic 60.0%
ACCATCAGTCCTGGCACGCT+TGG + chr3_3:69452791-69452810 None:intergenic 60.0%
GCTGCGGATGAATAGGCCTG+TGG + chr3_3:69453904-69453923 None:intergenic 60.0%
GGAACCTCATAGGGGGGAAC+TGG + chr3_3:69454003-69454022 None:intergenic 60.0%
! ACGGACTGCCAGCAGGAACA+CGG + chr3_3:69454065-69454084 None:intergenic 60.0%
! GGTCTATACGGACTGCCAGC+AGG + chr3_3:69454072-69454091 None:intergenic 60.0%
GGACCAGCACCATACACCAG+TGG - chr3_3:69454105-69454124 Msa0467960:three_prime_UTR 60.0%
GCTCCACTGGTGTATGGTGC+TGG + chr3_3:69454111-69454130 None:intergenic 60.0%
ACCATACACCAGTGGAGCCG+TGG - chr3_3:69454113-69454132 Msa0467960:three_prime_UTR 60.0%
ACCACGGCTCCACTGGTGTA+TGG + chr3_3:69454117-69454136 None:intergenic 60.0%
TACACCAGTGGAGCCGTGGT+TGG - chr3_3:69454117-69454136 Msa0467960:three_prime_UTR 60.0%
AGTGGAGCCGTGGTTGGACA+CGG - chr3_3:69454123-69454142 Msa0467960:three_prime_UTR 60.0%
GCGATCCAATAGCTGGGGCA+TGG + chr3_3:69454417-69454436 None:intergenic 60.0%
CAGGTCCAATAGGGACACCG+AGG + chr3_3:69454445-69454464 None:intergenic 60.0%
!! CTCGGTGTCCCTATTGGACC+TGG - chr3_3:69454443-69454462 Msa0467960:CDS 60.0%
CCTAGTGCCCTGCTAAGGCA+AGG + chr3_3:69454953-69454972 None:intergenic 60.0%
! CCTTGCCTTAGCAGGGCACT+AGG - chr3_3:69454950-69454969 Msa0467960:intron 60.0%
GCATACCTGGGATCCGGGTT+TGG + chr3_3:69455205-69455224 None:intergenic 60.0%
AGGCAGCATACCTGGGATCC+GGG + chr3_3:69455210-69455229 None:intergenic 60.0%
! GGTGAGCAGTGAGTGCTGCG+AGG + chr3_3:69452438-69452457 None:intergenic 65.0%
AGTCCTGGCACGCTTGGCAG+CGG + chr3_3:69452785-69452804 None:intergenic 65.0%
GCCAAGCGTGCCAGGACTGA+TGG - chr3_3:69452787-69452806 Msa0467960:three_prime_UTR 65.0%
GTGTCCAACCACGGCTCCAC+TGG + chr3_3:69454124-69454143 None:intergenic 65.0%
CCTGGCCTAGTGCCCTGCTA+AGG + chr3_3:69454958-69454977 None:intergenic 65.0%
! CCTTAGCAGGGCACTAGGCC+AGG - chr3_3:69454955-69454974 Msa0467960:intron 65.0%
CACACCCAAACCCGGATCCC+AGG - chr3_3:69455197-69455216 Msa0467960:intron 65.0%
CTTCCGCTGCCAAGCGTGCC+AGG - chr3_3:69452779-69452798 Msa0467960:three_prime_UTR 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 69452317 69457917 69452317 ID=Msa0467960;Name=Msa0467960
chr3_3 mRNA 69452317 69457917 69452317 ID=Msa0467960-mRNA-1;Parent=Msa0467960;Name=Msa0467960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=144|1|1|1|1|1|9|2099|347
chr3_3 exon 69452317 69454759 69452317 ID=Msa0467960-mRNA-1:exon:16446;Parent=Msa0467960-mRNA-1
chr3_3 exon 69454863 69454887 69454863 ID=Msa0467960-mRNA-1:exon:16445;Parent=Msa0467960-mRNA-1
chr3_3 exon 69455016 69455125 69455016 ID=Msa0467960-mRNA-1:exon:16444;Parent=Msa0467960-mRNA-1
chr3_3 exon 69455219 69455270 69455219 ID=Msa0467960-mRNA-1:exon:16443;Parent=Msa0467960-mRNA-1
chr3_3 exon 69455762 69455832 69455762 ID=Msa0467960-mRNA-1:exon:16442;Parent=Msa0467960-mRNA-1
chr3_3 exon 69456090 69456360 69456090 ID=Msa0467960-mRNA-1:exon:16441;Parent=Msa0467960-mRNA-1
chr3_3 exon 69456898 69457013 69456898 ID=Msa0467960-mRNA-1:exon:16440;Parent=Msa0467960-mRNA-1
chr3_3 exon 69457426 69457471 69457426 ID=Msa0467960-mRNA-1:exon:16439;Parent=Msa0467960-mRNA-1
chr3_3 exon 69457765 69457917 69457765 ID=Msa0467960-mRNA-1:exon:16438;Parent=Msa0467960-mRNA-1
chr3_3 five_prime_UTR 69457774 69457917 69457774 ID=Msa0467960-mRNA-1:five_prime_utr;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69457765 69457773 69457765 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69457426 69457471 69457426 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69456898 69457013 69456898 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69456090 69456360 69456090 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69455762 69455832 69455762 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69455219 69455270 69455219 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69455016 69455125 69455016 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69454863 69454887 69454863 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 CDS 69454416 69454759 69454416 ID=Msa0467960-mRNA-1:cds;Parent=Msa0467960-mRNA-1
chr3_3 three_prime_UTR 69452317 69454415 69452317 ID=Msa0467960-mRNA-1:three_prime_utr;Parent=Msa0467960-mRNA-1
Gene Sequence

>Msa0467960

ATGTCTCAGGTTGATAACAGGAATTCTTCCGCTGCCAAGCGTGCCAGGACTGATGGTAGCCGCAGGGAAGATGATTGGACATGTCCCAGTTGCGGCAATGTCAATTTCTCTTTCAGGACAACCTGCAATATGCGTAACTGCACCCAACCAAGGCCTGCTGATCATAATTCTAAATCTGCTGTGAAGCCTCTTCAAGCTCCACAGGCCTATTCATCCGCAGCTCCTTATTTAGGCTCCAACGCCCCCCCTTCAATTTATATTGGTGCCCCACCTTATGGGTCTTTATTCAATGGATCACCAGTTCCCCCCTATGAGGTTCCATTTACTGGAGGATCAGCCTATCAGTACAGTTATGGAAGCCGTGTTCCTGCTGGCAGTCCGTATAGACCATTACATCTAGCAGGACCAGCACCATACACCAGTGGAGCCGTGGTTGGACACGGTGGGATATATGCCATGCCCCAGCTATTGGATCGCTATGGCCTCGGTGTCCCTATTGGACCTGGAGCAATGGGCACTAGGCCAGGATTTTTTCGCGATGACAAGTCTCAGAAAAAGGGACCAGATGCAACTCGTGACAATGATTGGGCTTGTCCAAAATGTGGTAACGTCAATTTCTCATTTAGAACTGTTTGCAACATGAGAAAATGCAACACACCCAAACCCGGATCCCAGGCCTCAAAGTCTGATAAGAACACTAAGCAAAAGATGCCGGAGGGAAGCTGGAAGTGTGAAAAATGTAATAACATAAATTACCCATTCCGAACCAAGTGCAACAGACAGAATTGTGGTGCTGACAAGCCAGCTGAGTCGGAAAAATCTCCCTCATCATCTCCAGATCAAAATGAACAGGTTTGTTATGCAAAGCCTTTTCAATTTGCTAACCTTCATTTATTGTTGCAACAGAGATTGGTTTTTCATGAGCAGCTTTGTGACATAGTGAATATTTTCAAATTGAAAGCTGTTGTGAAGTTTTTGTTTAAATGTGTTTTTTCTGAAAAAGCTTCTCTTATGCTTCCTGTCATTTGGATTCTTTTGTTGTGA
Protein sequence

>Msa0467960

MSQVDNRNSSAAKRARTDGSRREDDWTCPSCGNVNFSFRTTCNMRNCTQPRPADHNSKSAVKPLQAPQAYSSAAPYLGSNAPPSIYIGAPPYGSLFNGSPVPPYEVPFTGGSAYQYSYGSRVPAGSPYRPLHLAGPAPYTSGAVVGHGGIYAMPQLLDRYGLGVPIGPGAMGTRPGFFRDDKSQKKGPDATRDNDWACPKCGNVNFSFRTVCNMRKCNTPKPGSQASKSDKNTKQKMPEGSWKCEKCNNINYPFRTKCNRQNCGADKPAESEKSPSSSPDQNEQVCYAKPFQFANLHLLLQQRLVFHEQLCDIVNIFKLKAVVKFLFKCVFSEKASLMLPVIWILLL*