AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0897900

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897900 MtrunA17_Chr6g0483761 95.866 508 21 0 1 508 1 508 0.0 947
Msa0897900 MtrunA17_Chr3g0128621 43.380 574 216 11 1 497 1 542 8.19e-111 339
Msa0897900 MtrunA17_Chr3g0128591 46.591 440 176 11 30 447 2 404 3.86e-88 279
Msa0897900 MtrunA17_Chr8g0350861 50.799 313 121 5 200 508 2 285 1.04e-79 250
Msa0897900 MtrunA17_Chr5g0432781 31.154 520 318 9 2 508 112 604 6.64e-56 197
Msa0897900 MtrunA17_Chr8g0350851 50.455 220 100 3 282 500 14 225 2.56e-54 182
Msa0897900 MtrunA17_Chr3g0107891 26.121 513 285 11 20 508 94 536 2.78e-31 127
Msa0897900 MtrunA17_Chr3g0128561 61.194 67 26 0 115 181 46 112 3.42e-15 72.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0897900 AT5G05180.3 35.294 289 152 4 236 500 115 392 1.79e-39 148
Msa0897900 AT5G05180.1 35.294 289 152 4 236 500 145 422 2.32e-39 148
Msa0897900 AT5G05180.2 34.722 288 129 4 236 499 145 397 2.01e-36 140
Msa0897900 AT5G58320.5 25.600 500 274 11 29 508 137 558 7.63e-21 96.3
Msa0897900 AT5G58320.2 25.600 500 274 11 29 508 137 558 7.63e-21 96.3
Msa0897900 AT2G30500.2 28.358 402 201 13 117 507 189 514 9.89e-20 92.8
Msa0897900 AT2G30500.1 28.358 402 201 13 117 507 189 514 9.89e-20 92.8
Msa0897900 AT2G30500.3 28.358 402 201 13 117 507 188 513 1.35e-19 92.4
Msa0897900 AT3G10880.2 55.435 92 40 1 396 486 188 279 3.55e-18 85.1
Msa0897900 AT3G10880.4 55.435 92 40 1 396 486 188 279 3.55e-18 85.1
Msa0897900 AT3G10880.3 55.435 92 40 1 396 486 226 317 6.22e-18 85.1
Msa0897900 AT3G10880.1 55.435 92 40 1 396 486 226 317 6.22e-18 85.1
Msa0897900 AT5G58320.3 25.076 327 206 7 29 338 94 398 2.00e-11 66.6
Msa0897900 AT5G58320.1 25.076 327 206 7 29 338 137 441 6.58e-11 65.1
Msa0897900 AT5G58320.4 25.076 327 206 7 29 338 137 441 6.58e-11 65.1

Find 121 sgRNAs with CRISPR-Local

Find 279 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATTGTTCCACCAAATT+TGG 0.113107 6_1:+90540359 None:intergenic
TTAACTTGTTTGCTAATAAA+TGG 0.193584 6_1:+90539970 None:intergenic
GATTGTTTCATAGATCTTTC+TGG 0.195878 6_1:-90539398 Msa0897900:three_prime_UTR
ATGGAGGGCACTGGTGATTT+TGG 0.209159 6_1:-90540953 Msa0897900:CDS
CTCTTCTCTCTCTACGATTC+AGG 0.232793 6_1:-90543803 Msa0897900:intron
GGAGACTCATGTTCCAAATT+TGG 0.236051 6_1:-90540372 Msa0897900:CDS
TGAAAGCTTAAGTTTCAAAT+TGG 0.275719 6_1:+90540541 None:intergenic
TCTTGACCAAGAAAGTTTAT+TGG 0.278735 6_1:-90540924 Msa0897900:CDS
TGGTCCTCAACCTGTCAATT+TGG 0.283380 6_1:-90540855 Msa0897900:CDS
AGCTTTAAGATTATCAATAT+TGG 0.286921 6_1:+90539755 None:intergenic
GAAAGAATTAACACTGAATA+AGG 0.291643 6_1:-90540453 Msa0897900:CDS
GGATGAACTTGAGTATAAAA+AGG 0.292784 6_1:-90540432 Msa0897900:CDS
AACAAACTGGCTTTGTCTTT+CGG 0.304602 6_1:+90540637 None:intergenic
GGACCAGAAGCTGTTGAAAT+TGG 0.304911 6_1:-90539172 Msa0897900:three_prime_UTR
AGATGATCAAATAGCAAATA+TGG 0.305452 6_1:-90539718 Msa0897900:CDS
GTCACTTAAAACTTTCTGTT+TGG 0.308667 6_1:-90543934 Msa0897900:five_prime_UTR
TCTCAAAAGCATGGTGTATA+AGG 0.310519 6_1:-90539215 Msa0897900:three_prime_UTR
AATAGGATGATTGAGGAAAA+AGG 0.314872 6_1:-90544031 Msa0897900:five_prime_UTR
AGACAGTTGATTGTAACTTT+AGG 0.322578 6_1:+90539431 None:intergenic
TTAGAATGGCAGCTTGATTC+AGG 0.324320 6_1:-90540206 Msa0897900:CDS
GAGTTACCAATAAACTTTCT+TGG 0.332624 6_1:+90540918 None:intergenic
TAGCATATCTCATTTGGTTA+TGG 0.338676 6_1:-90539001 Msa0897900:three_prime_UTR
TCCAAATTTGGTGGAACAAT+TGG 0.345849 6_1:-90540360 Msa0897900:CDS
ATGGATTAGCATATCTCATT+TGG 0.348379 6_1:-90539007 Msa0897900:three_prime_UTR
TGAAATGAAAAGTGAGGAAA+TGG 0.350227 6_1:+90543876 None:intergenic
AAAGACAAAGCCAGTTTGTT+GGG 0.356883 6_1:-90540634 Msa0897900:CDS
AGGCGAAATCAGTTCATTAA+AGG 0.362442 6_1:-90539883 Msa0897900:CDS
TTCTGGTATGGAGTATAATA+TGG 0.373850 6_1:+90540896 None:intergenic
GTGTCTTGGGTATGTTTGAT+TGG 0.376399 6_1:-90539121 Msa0897900:three_prime_UTR
ACTTCTGCAATCCCTGCTTC+TGG 0.382177 6_1:+90540879 None:intergenic
TGGGTATGTTTGATTGGTGT+AGG 0.384297 6_1:-90539115 Msa0897900:three_prime_UTR
GGCCACTAGCATGTGAAAAT+AGG 0.385723 6_1:-90544048 Msa0897900:five_prime_UTR
ATTTATTAGCAAACAAGTTA+AGG 0.393675 6_1:-90539968 Msa0897900:CDS
CATAGAGTTCTTTCTCTGCT+TGG 0.394397 6_1:-90539283 Msa0897900:three_prime_UTR
TTCCTCCCTCCCCAACAAAC+TGG 0.399674 6_1:+90540624 None:intergenic
TGATGTGGAAGCTGTGAATA+AGG 0.402744 6_1:-90539838 Msa0897900:CDS
CACTCTCTTGTGCACGAAGC+TGG 0.409875 6_1:+90539682 None:intergenic
GGGTATGTTTGATTGGTGTA+GGG 0.410179 6_1:-90539114 Msa0897900:three_prime_UTR
ATACCAATTTCAACAGCTTC+TGG 0.417542 6_1:+90539169 None:intergenic
TGCAATCCCTGCTTCTGGTA+TGG 0.419352 6_1:+90540884 None:intergenic
CAAGCGAGAAGCACAGTTGC+CGG 0.428625 6_1:+90539526 None:intergenic
GCGATGTGAAGCTGAACATT+TGG 0.430456 6_1:-90539946 Msa0897900:CDS
TTCTTTCAGCTTACCTTGAG+TGG 0.435903 6_1:+90540673 None:intergenic
GACCTCAACACTGGAGGAAT+GGG 0.440516 6_1:-90540003 Msa0897900:CDS
CTAGATAATATTTCATGAAA+AGG 0.443688 6_1:+90539246 None:intergenic
AAGATTATCAATATTGGCAT+TGG 0.444733 6_1:+90539761 None:intergenic
TTGGACTTCTCTCCTAGCTC+AGG 0.462175 6_1:-90540836 Msa0897900:CDS
AAGAGAAGAGGGAGGCAATC+CGG 0.472016 6_1:-90539545 Msa0897900:CDS
GAAATGGAACAAACGAGAAA+AGG 0.473199 6_1:+90543892 None:intergenic
AAAATCAAAATTAAAACATC+GGG 0.473604 6_1:-90543983 Msa0897900:five_prime_UTR
TGAAACTAACCTTGAAATTG+AGG 0.476440 6_1:-90540132 Msa0897900:CDS
AAGCAGGGATTGCAGAAGTC+TGG 0.482361 6_1:-90540875 Msa0897900:CDS
TTTCCTGTGCCACTTCAAGC+TGG 0.485925 6_1:+90540240 None:intergenic
AAATTTGCGAGTTGGAAGAC+AGG 0.492430 6_1:-90540175 Msa0897900:CDS
AAGTCCAAATTGACAGGTTG+AGG 0.495784 6_1:+90540851 None:intergenic
CTTCATCATTTGATATCTTG+AGG 0.496814 6_1:+90540321 None:intergenic
CAGTTGATTGTAACTTTAGG+AGG 0.501147 6_1:+90539434 None:intergenic
TGACCTCAACACTGGAGGAA+TGG 0.502490 6_1:-90540004 Msa0897900:CDS
CAATCTCAGATGGAGGGCAC+TGG 0.502676 6_1:-90540962 Msa0897900:intron
CAGAAAGCAAATTTGCGAGT+TGG 0.505145 6_1:-90540183 Msa0897900:CDS
GCTGCATGCTACACAACAAA+TGG 0.505828 6_1:-90539913 Msa0897900:CDS
TTTAAGTGACAGAGAAGAGA+AGG 0.506359 6_1:+90543947 None:intergenic
GCAAGATTAAGAAAGGAACT+TGG 0.511927 6_1:-90540296 Msa0897900:CDS
GAAAGACAAAGCCAGTTTGT+TGG 0.512387 6_1:-90540635 Msa0897900:CDS
GGAGATCACAACATTCTGTC+TGG 0.517361 6_1:+90539578 None:intergenic
AAACTAGCAATGTGTGTCTT+GGG 0.519239 6_1:-90539134 Msa0897900:three_prime_UTR
TTATACTCCATACCAGAAGC+AGG 0.522141 6_1:-90540891 Msa0897900:CDS
GAATGTTGTGATCTCCGATC+GGG 0.529775 6_1:-90539571 Msa0897900:CDS
TGAAGTTGCAAGATTAAGAA+AGG 0.532063 6_1:-90540303 Msa0897900:CDS
AGCCAGTTTGTTGGGGAGGG+AGG 0.534754 6_1:-90540626 Msa0897900:CDS
GGTATGTTTGATTGGTGTAG+GGG 0.535705 6_1:-90539113 Msa0897900:three_prime_UTR
TAAACTAGCAATGTGTGTCT+TGG 0.536320 6_1:-90539135 Msa0897900:three_prime_UTR
CAAAGCCAGTTTGTTGGGGA+GGG 0.537962 6_1:-90540629 Msa0897900:CDS
CAAGATTAAGAAAGGAACTT+GGG 0.540440 6_1:-90540295 Msa0897900:CDS
AAAATGTGACTAAATTAGAA+TGG 0.541639 6_1:-90540220 Msa0897900:CDS
CAGTATTAACCGCCGTGCCA+TGG 0.542390 6_1:+90540708 None:intergenic
GGATGAAATGCATGATGTGC+AGG 0.543842 6_1:-90540096 Msa0897900:CDS
GGAGAGAAGTCCAAATTGAC+AGG 0.545424 6_1:+90540845 None:intergenic
CACGAAGCTGGATAAGCTCT+CGG 0.545747 6_1:+90539694 None:intergenic
AGACCAGCTTGAAGTGGCAC+AGG 0.547887 6_1:-90540243 Msa0897900:CDS
CCTCTTCTCTTCATCCCGAT+CGG 0.548058 6_1:+90539557 None:intergenic
AAATAGTACACAACCCATGC+AGG 0.549824 6_1:+90539318 None:intergenic
AGAGTCAGTTTCAGAATCAG+AGG 0.550792 6_1:+90540754 None:intergenic
GAGCTAACACCACCTGAGCT+AGG 0.552383 6_1:+90540824 None:intergenic
TTTACTGTCAAAATATGTAG+TGG 0.553168 6_1:-90539047 Msa0897900:three_prime_UTR
AGTTGGAAGACAGGATTACC+TGG 0.554916 6_1:-90540166 Msa0897900:CDS
ATGTGAAAATAGGATGATTG+AGG 0.557068 6_1:-90544038 Msa0897900:five_prime_UTR
ACAAAGCCAGTTTGTTGGGG+AGG 0.557241 6_1:-90540630 Msa0897900:CDS
CAAAATCAAAATTAAAACAT+CGG 0.557331 6_1:-90543984 Msa0897900:five_prime_UTR
GACTCATGTTCCAAATTTGG+TGG 0.560411 6_1:-90540369 Msa0897900:CDS
CTCTGCCGCTTCTCACAAGG+AGG 0.560929 6_1:-90540804 Msa0897900:CDS
AGAGAGTGAAATGAAAAGTG+AGG 0.570811 6_1:+90543870 None:intergenic
GACGATGAAGGAACCACTCA+AGG 0.572786 6_1:-90540686 Msa0897900:CDS
TAGCTCTGCCGCTTCTCACA+AGG 0.573141 6_1:-90540807 Msa0897900:CDS
CTCCCATTCCTCCAGTGTTG+AGG 0.578084 6_1:+90540001 None:intergenic
GAGAAGAGAAGGAACTGATG+TGG 0.581387 6_1:+90543958 None:intergenic
AACACAGTTGACCTCAACAC+TGG 0.582464 6_1:-90540012 Msa0897900:CDS
CGATCGGGATGAAGAGAAGA+GGG 0.583720 6_1:-90539556 Msa0897900:CDS
GACTTCTCTCCTAGCTCAGG+TGG 0.584402 6_1:-90540833 Msa0897900:CDS
GCGGTTAATACTGACGATGA+AGG 0.584608 6_1:-90540698 Msa0897900:CDS
AAGACAAAGCCAGTTTGTTG+GGG 0.587713 6_1:-90540633 Msa0897900:CDS
TCATCAGAGAAGACATGATG+TGG 0.588766 6_1:-90539853 Msa0897900:CDS
TTTGTCTTTCGGTATCAGCA+AGG 0.590321 6_1:+90540648 None:intergenic
AGAACCCTCCTTGTGAGAAG+CGG 0.600272 6_1:+90540799 None:intergenic
TCGCTTGATCACTACAAGAG+TGG 0.603397 6_1:-90539510 Msa0897900:CDS
ATTGCAAGACCAGCTTGAAG+TGG 0.606605 6_1:-90540249 Msa0897900:CDS
AGAAGAGAAGGAACTGATGT+GGG 0.608785 6_1:+90543959 None:intergenic
TCCTCACAATCTCAGATGGA+GGG 0.612527 6_1:-90540968 Msa0897900:intron
CCGATCGGGATGAAGAGAAG+AGG 0.612539 6_1:-90539557 Msa0897900:CDS
AGAATGTTGTGATCTCCGAT+CGG 0.621404 6_1:-90539572 Msa0897900:CDS
GAATCAAAATGAGAAAAGTG+AGG 0.626506 6_1:-90540495 Msa0897900:CDS
AATCAAAATGAGAAAAGTGA+GGG 0.627000 6_1:-90540494 Msa0897900:CDS
GTCAGTTTCAGAATCAGAGG+AGG 0.631262 6_1:+90540757 None:intergenic
TGTAATTCATTACCATGGCA+CGG 0.633012 6_1:-90540720 Msa0897900:CDS
ACACAACAAATGGTTATGCA+AGG 0.640355 6_1:-90539903 Msa0897900:CDS
TATACTCCATACCAGAAGCA+GGG 0.646612 6_1:-90540890 Msa0897900:CDS
ACAGTTGACCTCAACACTGG+AGG 0.661595 6_1:-90540009 Msa0897900:CDS
AAGTCTGTAATTCATTACCA+TGG 0.664113 6_1:-90540725 Msa0897900:CDS
TCTGCCGCTTCTCACAAGGA+GGG 0.673095 6_1:-90540803 Msa0897900:CDS
TCGGGATGAAGAGAAGAGGG+AGG 0.677476 6_1:-90539553 Msa0897900:CDS
AATTCATTACCATGGCACGG+CGG 0.800428 6_1:-90540717 Msa0897900:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGAATTTTTTAAGTAATTTT+CGG - chr6_1:90539750-90539769 Msa0897900:CDS 10.0%
!!! ATCATTTTAGTATTTAAAAT+TGG - chr6_1:90540820-90540839 Msa0897900:CDS 10.0%
!!! TCATTTTAGTATTTAAAATT+GGG - chr6_1:90540821-90540840 Msa0897900:CDS 10.0%
!!! GATGTTTTAATTTTGATTTT+GGG + chr6_1:90539076-90539095 None:intergenic 15.0%
!! CAAAATCAAAATTAAAACAT+CGG - chr6_1:90539075-90539094 Msa0897900:three_prime_UTR 15.0%
!! AAAATCAAAATTAAAACATC+GGG - chr6_1:90539076-90539095 Msa0897900:three_prime_UTR 15.0%
!! AAAAAAAATATGAGTTCATT+TGG - chr6_1:90539538-90539557 Msa0897900:CDS 15.0%
!!! ATTTTTTCCTATTTGAAAAA+TGG + chr6_1:90540067-90540086 None:intergenic 15.0%
!!! CATTTTAGTATTTAAAATTG+GGG - chr6_1:90540822-90540841 Msa0897900:CDS 15.0%
!!! ATTTTAGTATTTAAAATTGG+GGG - chr6_1:90540823-90540842 Msa0897900:CDS 15.0%
!!! AATTTGTCATTTCAATAATT+TGG - chr6_1:90540921-90540940 Msa0897900:CDS 15.0%
!!! ATTTGTCATTTCAATAATTT+GGG - chr6_1:90540922-90540941 Msa0897900:CDS 15.0%
!! TTAACATCTTAAAATTATAG+AGG + chr6_1:90540963-90540982 None:intergenic 15.0%
!! TTTACCTTAATATTTAATGA+TGG + chr6_1:90541086-90541105 None:intergenic 15.0%
!! TGATTAAACATTTATTCATT+TGG - chr6_1:90541956-90541975 Msa0897900:intron 15.0%
!! GATTAAACATTTATTCATTT+GGG - chr6_1:90541957-90541976 Msa0897900:intron 15.0%
!!! TAATTTTGATTTTGGGATTT+GGG + chr6_1:90539069-90539088 None:intergenic 20.0%
!!! TTAATTTTGATTTTGGGATT+TGG + chr6_1:90539070-90539089 None:intergenic 20.0%
!!! CGATGTTTTAATTTTGATTT+TGG + chr6_1:90539077-90539096 None:intergenic 20.0%
!!! CTTGTTTAATTTTAAGTTCT+TGG - chr6_1:90539348-90539367 Msa0897900:three_prime_UTR 20.0%
!!! AGAATTGATTCTAATATGTT+TGG + chr6_1:90539975-90539994 None:intergenic 20.0%
!!! ACACCTATTTTAATCAATTT+TGG - chr6_1:90539995-90540014 Msa0897900:CDS 20.0%
!!! ATAATTGATTTTGACATGTT+TGG - chr6_1:90540101-90540120 Msa0897900:CDS 20.0%
!! TTATGTAAGCTTATACATAA+GGG - chr6_1:90540534-90540553 Msa0897900:CDS 20.0%
!!! ACTAATTTTCATATACTCTA+GGG - chr6_1:90540646-90540665 Msa0897900:CDS 20.0%
!!! TTTGTCATTTCAATAATTTG+GGG - chr6_1:90540923-90540942 Msa0897900:CDS 20.0%
!! ATGACCATCATTAAATATTA+AGG - chr6_1:90541079-90541098 Msa0897900:intron 20.0%
!! CATAAATGTACATATAGAAA+GGG + chr6_1:90541328-90541347 None:intergenic 20.0%
!! ACATAAATGTACATATAGAA+AGG + chr6_1:90541329-90541348 None:intergenic 20.0%
!! ATTGTAGTAATAAGACAATT+TGG - chr6_1:90541370-90541389 Msa0897900:intron 20.0%
!! CAATCAAAATACATATCAAA+AGG + chr6_1:90541800-90541819 None:intergenic 20.0%
!!! TTGATATGTATTTTGATTGT+AGG - chr6_1:90541801-90541820 Msa0897900:intron 20.0%
!! TTTAATCATGAACAATAAAC+TGG + chr6_1:90541944-90541963 None:intergenic 20.0%
!! AAAATGTGACTAAATTAGAA+TGG - chr6_1:90542839-90542858 Msa0897900:intron 20.0%
!!! TTAACTTGTTTGCTAATAAA+TGG + chr6_1:90543092-90543111 None:intergenic 20.0%
!! ATTTATTAGCAAACAAGTTA+AGG - chr6_1:90543091-90543110 Msa0897900:intron 20.0%
!!! AGCTTTAAGATTATCAATAT+TGG + chr6_1:90543307-90543326 None:intergenic 20.0%
!!! TTGTGTACTATTTCTTTTTT+GGG - chr6_1:90543751-90543770 Msa0897900:intron 20.0%
!! CTAGATAATATTTCATGAAA+AGG + chr6_1:90543816-90543835 None:intergenic 20.0%
!!! GTAATTTTGTTATGTTTGTT+AGG - chr6_1:90543866-90543885 Msa0897900:five_prime_UTR 20.0%
!!! ACTAGTTCCATTTTTCAAAT+AGG - chr6_1:90540057-90540076 Msa0897900:CDS 25.0%
! ATAGGAAAAAATGATTCTAG+AGG - chr6_1:90540075-90540094 Msa0897900:CDS 25.0%
! TACGATGAGAAAAATTGATT+TGG + chr6_1:90540309-90540328 None:intergenic 25.0%
!!! ATTTTCTGGCATAAATTTGA+TGG - chr6_1:90540377-90540396 Msa0897900:CDS 25.0%
!!! TTTTCTGGCATAAATTTGAT+GGG - chr6_1:90540378-90540397 Msa0897900:CDS 25.0%
!! CAGTTTATGACAATTTTCAT+TGG - chr6_1:90540425-90540444 Msa0897900:CDS 25.0%
! CTTATGTAAGCTTATACATA+AGG - chr6_1:90540533-90540552 Msa0897900:CDS 25.0%
! TCAAAGTTGTTTATCTAAAC+AGG - chr6_1:90540589-90540608 Msa0897900:CDS 25.0%
! AGAGTATATGAAAATTAGTC+TGG + chr6_1:90540645-90540664 None:intergenic 25.0%
!! GACTAATTTTCATATACTCT+AGG - chr6_1:90540645-90540664 Msa0897900:CDS 25.0%
! TTACTCCAAATATTATGTGA+TGG - chr6_1:90540761-90540780 Msa0897900:CDS 25.0%
! ATACATACATTTACATGAGA+AGG + chr6_1:90540799-90540818 None:intergenic 25.0%
!! CTTTAATTTCAGGACTTATT+CGG + chr6_1:90540883-90540902 None:intergenic 25.0%
!! TTGTCATTTCAATAATTTGG+GGG - chr6_1:90540924-90540943 Msa0897900:CDS 25.0%
!! AGATAAAATGATGATGCTTT+AGG - chr6_1:90541249-90541268 Msa0897900:intron 25.0%
!! GATAAAATGATGATGCTTTA+GGG - chr6_1:90541250-90541269 Msa0897900:intron 25.0%
! AAAGGTTTACTCCAAATATT+AGG - chr6_1:90540755-90540774 Msa0897900:CDS 25.0%
! AATTTCAAAGACCAAAATGA+TGG - chr6_1:90541499-90541518 Msa0897900:intron 25.0%
! TCATTTGTCAAAGCAAAATA+AGG + chr6_1:90541606-90541625 None:intergenic 25.0%
! CAAACATCAAATAATCAACA+AGG + chr6_1:90541997-90542016 None:intergenic 25.0%
!! CTTGTTGATTATTTGATGTT+TGG - chr6_1:90541995-90542014 Msa0897900:intron 25.0%
! TGATTATTTGATGTTTGGAA+TGG - chr6_1:90542000-90542019 Msa0897900:intron 25.0%
! GAAGAAGTTCATTAAAAATG+AGG - chr6_1:90542480-90542499 Msa0897900:intron 25.0%
! TGAAAGCTTAAGTTTCAAAT+TGG + chr6_1:90542521-90542540 None:intergenic 25.0%
! AATCAAAATGAGAAAAGTGA+GGG - chr6_1:90542565-90542584 Msa0897900:intron 25.0%
! GAAAGAATTAACACTGAATA+AGG - chr6_1:90542606-90542625 Msa0897900:intron 25.0%
! GATGAACTTGAGTATAAAAA+GGG - chr6_1:90542628-90542647 Msa0897900:intron 25.0%
!!! AGTTTCATTAGTTTTAAACC+AGG + chr6_1:90542914-90542933 None:intergenic 25.0%
! AAGATTATCAATATTGGCAT+TGG + chr6_1:90543301-90543320 None:intergenic 25.0%
! AGATGATCAAATAGCAAATA+TGG - chr6_1:90543341-90543360 Msa0897900:intron 25.0%
! TAAAAAAAAAACATCCTGCA+TGG - chr6_1:90543727-90543746 Msa0897900:intron 25.0%
! AAAAAAAAAACATCCTGCAT+GGG - chr6_1:90543728-90543747 Msa0897900:intron 25.0%
!!! GTTGTGTACTATTTCTTTTT+TGG - chr6_1:90543750-90543769 Msa0897900:intron 25.0%
! TTTACTGTCAAAATATGTAG+TGG - chr6_1:90544012-90544031 Msa0897900:five_prime_UTR 25.0%
ATGTGAAAATAGGATGATTG+AGG - chr6_1:90539021-90539040 Msa0897900:three_prime_UTR 30.0%
AATAGGATGATTGAGGAAAA+AGG - chr6_1:90539028-90539047 Msa0897900:three_prime_UTR 30.0%
GTCACTTAAAACTTTCTGTT+TGG - chr6_1:90539125-90539144 Msa0897900:three_prime_UTR 30.0%
TGAAATGAAAAGTGAGGAAA+TGG + chr6_1:90539186-90539205 None:intergenic 30.0%
ATAAAAGCGATTACGCAAAA+AGG + chr6_1:90539322-90539341 None:intergenic 30.0%
! GTTCTTTGAATTTTGTGCTT+CGG - chr6_1:90539404-90539423 Msa0897900:three_prime_UTR 30.0%
TAAACCTAGAAAATGTGTGA+TGG - chr6_1:90539465-90539484 Msa0897900:CDS 30.0%
GGGCCAAAATTGATTAAAAT+AGG + chr6_1:90540001-90540020 None:intergenic 30.0%
!!! TGTTTGGTTCTACTTTTAGA+GGG + chr6_1:90540022-90540041 None:intergenic 30.0%
!!! ATGTTTGGTTCTACTTTTAG+AGG + chr6_1:90540023-90540042 None:intergenic 30.0%
TCATAATCTAGGTGTATGTT+TGG + chr6_1:90540038-90540057 None:intergenic 30.0%
AATGGAACTAGTCATAATCT+AGG + chr6_1:90540049-90540068 None:intergenic 30.0%
! GCTTATTTGAGCTAATTTTC+TGG - chr6_1:90540363-90540382 Msa0897900:CDS 30.0%
ATAAATTTGATGGGACTGTT+TGG - chr6_1:90540387-90540406 Msa0897900:CDS 30.0%
TAAATTTGATGGGACTGTTT+GGG - chr6_1:90540388-90540407 Msa0897900:CDS 30.0%
TATGCTATACGCTATATTAG+AGG + chr6_1:90540475-90540494 None:intergenic 30.0%
TTTGACAGCTTATAGCATAA+GGG + chr6_1:90540574-90540593 None:intergenic 30.0%
CAACATCTAAGCATAAACTA+GGG + chr6_1:90540615-90540634 None:intergenic 30.0%
CTAGTTTATGCTTAGATGTT+GGG - chr6_1:90540614-90540633 Msa0897900:CDS 30.0%
CTATTACCTTATCTCATACT+TGG + chr6_1:90540715-90540734 None:intergenic 30.0%
CTTAGCCATCACATAATATT+TGG + chr6_1:90540769-90540788 None:intergenic 30.0%
TATTCGGCATTTCATAAATC+TGG + chr6_1:90540867-90540886 None:intergenic 30.0%
TAAGTCCTGAAATTAAAGAC+CGG - chr6_1:90540885-90540904 Msa0897900:CDS 30.0%
! AAATACCGGTCTTTAATTTC+AGG + chr6_1:90540893-90540912 None:intergenic 30.0%
AATTAAAGACCGGTATTTGA+TGG - chr6_1:90540895-90540914 Msa0897900:CDS 30.0%
CAAATTAGTCCATCAAATAC+CGG + chr6_1:90540907-90540926 None:intergenic 30.0%
TATCACACTACTCTATTCTA+GGG + chr6_1:90540986-90541005 None:intergenic 30.0%
ATCTACTATTCAGTCTTACA+TGG + chr6_1:90541233-90541252 None:intergenic 30.0%
TTACTCCAAATATTAGGTGA+TGG - chr6_1:90541292-90541311 Msa0897900:intron 30.0%
!! TTTGGTCTTTGAAATTGTAG+AGG + chr6_1:90541495-90541514 None:intergenic 30.0%
! CAATGACTATACCATCATTT+TGG + chr6_1:90541513-90541532 None:intergenic 30.0%
! TTTTGCTTTGACAAATGAGT+TGG - chr6_1:90541608-90541627 Msa0897900:intron 30.0%
TTTGCTTTGACAAATGAGTT+GGG - chr6_1:90541609-90541628 Msa0897900:intron 30.0%
TGCATAAAAATTATGTCTCC+TGG + chr6_1:90541680-90541699 None:intergenic 30.0%
! TAAAGTGCTATCTGTTTCAA+AGG - chr6_1:90541707-90541726 Msa0897900:intron 30.0%
! ATGGAAAAGTTGTTCCTTTT+AGG - chr6_1:90542019-90542038 Msa0897900:intron 30.0%
TCTTGACCAAGAAAGTTTAT+TGG - chr6_1:90542135-90542154 Msa0897900:intron 30.0%
GAGTTACCAATAAACTTTCT+TGG + chr6_1:90542144-90542163 None:intergenic 30.0%
TTCTGGTATGGAGTATAATA+TGG + chr6_1:90542166-90542185 None:intergenic 30.0%
AAGTCTGTAATTCATTACCA+TGG - chr6_1:90542334-90542353 Msa0897900:intron 30.0%
GAATCAAAATGAGAAAAGTG+AGG - chr6_1:90542564-90542583 Msa0897900:intron 30.0%
GGATGAACTTGAGTATAAAA+AGG - chr6_1:90542627-90542646 Msa0897900:intron 30.0%
CTTCATCATTTGATATCTTG+AGG + chr6_1:90542741-90542760 None:intergenic 30.0%
TGAAGTTGCAAGATTAAGAA+AGG - chr6_1:90542756-90542775 Msa0897900:intron 30.0%
CAAGATTAAGAAAGGAACTT+GGG - chr6_1:90542764-90542783 Msa0897900:intron 30.0%
TGAAACTAACCTTGAAATTG+AGG - chr6_1:90542927-90542946 Msa0897900:intron 30.0%
AGTAGAAGAACTTGAAAAAG+AGG - chr6_1:90543455-90543474 Msa0897900:intron 30.0%
! GAAATTCTTCAAGCTTTTAC+TGG - chr6_1:90543579-90543598 Msa0897900:intron 30.0%
AGACAGTTGATTGTAACTTT+AGG + chr6_1:90543631-90543650 None:intergenic 30.0%
GATTGTTTCATAGATCTTTC+TGG - chr6_1:90543661-90543680 Msa0897900:intron 30.0%
!! GCTTTTATTTCTCAAAAGCA+TGG - chr6_1:90543835-90543854 Msa0897900:five_prime_UTR 30.0%
!! ATGGATTAGCATATCTCATT+TGG - chr6_1:90544052-90544071 Msa0897900:five_prime_UTR 30.0%
TAGCATATCTCATTTGGTTA+TGG - chr6_1:90544058-90544077 Msa0897900:five_prime_UTR 30.0%
! CCTCCTTTTCAAAATCAAGT+CGG + chr6_1:90538993-90539012 None:intergenic 35.0%
! ATCCTATTTTCACATGCTAG+TGG + chr6_1:90539016-90539035 None:intergenic 35.0%
GATGATTGAGGAAAAAGGAA+AGG - chr6_1:90539033-90539052 Msa0897900:three_prime_UTR 35.0%
TTTAAGTGACAGAGAAGAGA+AGG + chr6_1:90539115-90539134 None:intergenic 35.0%
GAAATGGAACAAACGAGAAA+AGG + chr6_1:90539170-90539189 None:intergenic 35.0%
AGAGAGTGAAATGAAAAGTG+AGG + chr6_1:90539192-90539211 None:intergenic 35.0%
! TGATCCATCACACATTTTCT+AGG + chr6_1:90539472-90539491 None:intergenic 35.0%
TTAATCTCTGTTGAGAAGCT+GGG - chr6_1:90539680-90539699 Msa0897900:CDS 35.0%
!! TTTCAAGTGAGTTGATTCTG+AGG - chr6_1:90539794-90539813 Msa0897900:CDS 35.0%
AGCTACAAATCTTAGCTTCA+AGG - chr6_1:90539907-90539926 Msa0897900:CDS 35.0%
!!! GTTTGGTTCTACTTTTAGAG+GGG + chr6_1:90540021-90540040 None:intergenic 35.0%
!! CTCTCGAGTAGAATTAGTTT+TGG - chr6_1:90540127-90540146 Msa0897900:CDS 35.0%
TCGAACTTGAAGCTAGAAAT+TGG - chr6_1:90540163-90540182 Msa0897900:CDS 35.0%
TCAAATAAGCCAATCCAAAC+AGG + chr6_1:90540353-90540372 None:intergenic 35.0%
CTTTGACAGCTTATAGCATA+AGG + chr6_1:90540575-90540594 None:intergenic 35.0%
CCAACATCTAAGCATAAACT+AGG + chr6_1:90540616-90540635 None:intergenic 35.0%
CCTAGTTTATGCTTAGATGT+TGG - chr6_1:90540613-90540632 Msa0897900:CDS 35.0%
ATCAGACCAAGTATGAGATA+AGG - chr6_1:90540706-90540725 Msa0897900:CDS 35.0%
TGAGATAAGGTAATAGTTGC+AGG - chr6_1:90540719-90540738 Msa0897900:CDS 35.0%
GCAGGTCTCAATTGAATTAA+AGG - chr6_1:90540737-90540756 Msa0897900:CDS 35.0%
CTATCACACTACTCTATTCT+AGG + chr6_1:90540987-90541006 None:intergenic 35.0%
TAGGGACTGAGGTTAATTAA+AGG - chr6_1:90541268-90541287 Msa0897900:intron 35.0%
CATTGCCATCACCTAATATT+TGG + chr6_1:90541300-90541319 None:intergenic 35.0%
TTGCTTTGACAAATGAGTTG+GGG - chr6_1:90541610-90541629 Msa0897900:intron 35.0%
AAGGAGTAAGTAAGTACTTG+AGG - chr6_1:90541726-90541745 Msa0897900:intron 35.0%
! GAGATTTAAAGTGTCTATGC+TGG - chr6_1:90541767-90541786 Msa0897900:intron 35.0%
ATAAGTACTCTGCATTACAG+GGG + chr6_1:90542056-90542075 None:intergenic 35.0%
GATAAGTACTCTGCATTACA+GGG + chr6_1:90542057-90542076 None:intergenic 35.0%
TGATAAGTACTCTGCATTAC+AGG + chr6_1:90542058-90542077 None:intergenic 35.0%
TTTATCCTCACAATCTCAGA+TGG - chr6_1:90542087-90542106 Msa0897900:intron 35.0%
TGTAATTCATTACCATGGCA+CGG - chr6_1:90542339-90542358 Msa0897900:intron 35.0%
!! AACAAACTGGCTTTGTCTTT+CGG + chr6_1:90542425-90542444 None:intergenic 35.0%
! AAAGACAAAGCCAGTTTGTT+GGG - chr6_1:90542425-90542444 Msa0897900:intron 35.0%
ACTTGAGTATAAAAAGGGAC+AGG - chr6_1:90542633-90542652 Msa0897900:intron 35.0%
! TCCAAATTTGGTGGAACAAT+TGG - chr6_1:90542699-90542718 Msa0897900:intron 35.0%
TCCAATTGTTCCACCAAATT+TGG + chr6_1:90542703-90542722 None:intergenic 35.0%
GCAAGATTAAGAAAGGAACT+TGG - chr6_1:90542763-90542782 Msa0897900:intron 35.0%
! GTTTTTGCACCTCAATTTCA+AGG + chr6_1:90542939-90542958 None:intergenic 35.0%
AATTGAGGTGCAAAAACTGA+AGG - chr6_1:90542942-90542961 Msa0897900:intron 35.0%
ACACAACAAATGGTTATGCA+AGG - chr6_1:90543156-90543175 Msa0897900:intron 35.0%
AGGCGAAATCAGTTCATTAA+AGG - chr6_1:90543176-90543195 Msa0897900:intron 35.0%
! TTCAAGCTTTTACTGGTCAT+AGG - chr6_1:90543586-90543605 Msa0897900:intron 35.0%
CAGTTGATTGTAACTTTAGG+AGG + chr6_1:90543628-90543647 None:intergenic 35.0%
! TCTCAAAAGCATGGTGTATA+AGG - chr6_1:90543844-90543863 Msa0897900:five_prime_UTR 35.0%
ATACCAATTTCAACAGCTTC+TGG + chr6_1:90543893-90543912 None:intergenic 35.0%
TAAACTAGCAATGTGTGTCT+TGG - chr6_1:90543924-90543943 Msa0897900:five_prime_UTR 35.0%
AAACTAGCAATGTGTGTCTT+GGG - chr6_1:90543925-90543944 Msa0897900:five_prime_UTR 35.0%
! GGACTGTTTTCTGTATATGA+TGG - chr6_1:90544033-90544052 Msa0897900:five_prime_UTR 35.0%
!! CCGACTTGATTTTGAAAAGG+AGG - chr6_1:90538990-90539009 Msa0897900:three_prime_UTR 40.0%
GATTGAGGAAAAAGGAAAGG+CGG - chr6_1:90539036-90539055 Msa0897900:three_prime_UTR 40.0%
ATTGAGGAAAAAGGAAAGGC+GGG - chr6_1:90539037-90539056 Msa0897900:three_prime_UTR 40.0%
AGAAGAGAAGGAACTGATGT+GGG + chr6_1:90539103-90539122 None:intergenic 40.0%
GTTAATCTCTGTTGAGAAGC+TGG - chr6_1:90539679-90539698 Msa0897900:CDS 40.0%
TAATCTCTGTTGAGAAGCTG+GGG - chr6_1:90539681-90539700 Msa0897900:CDS 40.0%
GCTTCAAGGAGAATCAATTC+TGG - chr6_1:90539921-90539940 Msa0897900:CDS 40.0%
TCAAGGAGAATCAATTCTGG+AGG - chr6_1:90539924-90539943 Msa0897900:CDS 40.0%
GTAGTACCAAGCATACACTA+GGG - chr6_1:90540326-90540345 Msa0897900:CDS 40.0%
TAGTACCAAGCATACACTAG+GGG - chr6_1:90540327-90540346 Msa0897900:CDS 40.0%
GTCTCAGCAAAGACTAACAT+CGG + chr6_1:90541170-90541189 None:intergenic 40.0%
!! ATGTTAGTCTTTGCTGAGAC+TGG - chr6_1:90541170-90541189 Msa0897900:intron 40.0%
TAAGTGTCTGCAACTGACAT+GGG + chr6_1:90541542-90541561 None:intergenic 40.0%
TTGCAGACACTTACTCTCAT+AGG - chr6_1:90541549-90541568 Msa0897900:intron 40.0%
TGCAGACACTTACTCTCATA+GGG - chr6_1:90541550-90541569 Msa0897900:intron 40.0%
ACTGTCACTGTCTTACTGAA+TGG - chr6_1:90541909-90541928 Msa0897900:intron 40.0%
GGGGGGAAAAAAATCCTAAA+AGG + chr6_1:90542036-90542055 None:intergenic 40.0%
TAAGTACTCTGCATTACAGG+GGG + chr6_1:90542055-90542074 None:intergenic 40.0%
TTATACTCCATACCAGAAGC+AGG - chr6_1:90542168-90542187 Msa0897900:intron 40.0%
TATACTCCATACCAGAAGCA+GGG - chr6_1:90542169-90542188 Msa0897900:intron 40.0%
AAGTCCAAATTGACAGGTTG+AGG + chr6_1:90542211-90542230 None:intergenic 40.0%
AGAGTCAGTTTCAGAATCAG+AGG + chr6_1:90542308-90542327 None:intergenic 40.0%
TTCTTTCAGCTTACCTTGAG+TGG + chr6_1:90542389-90542408 None:intergenic 40.0%
TTTGTCTTTCGGTATCAGCA+AGG + chr6_1:90542414-90542433 None:intergenic 40.0%
GAAAGACAAAGCCAGTTTGT+TGG - chr6_1:90542424-90542443 Msa0897900:intron 40.0%
!! AAGACAAAGCCAGTTTGTTG+GGG - chr6_1:90542426-90542445 Msa0897900:intron 40.0%
GCAAAAGCAAAAAGCTGAGT+TGG - chr6_1:90542666-90542685 Msa0897900:intron 40.0%
GGAGACTCATGTTCCAAATT+TGG - chr6_1:90542687-90542706 Msa0897900:intron 40.0%
GACTCATGTTCCAAATTTGG+TGG - chr6_1:90542690-90542709 Msa0897900:intron 40.0%
TTAGAATGGCAGCTTGATTC+AGG - chr6_1:90542853-90542872 Msa0897900:intron 40.0%
CAGAAAGCAAATTTGCGAGT+TGG - chr6_1:90542876-90542895 Msa0897900:intron 40.0%
! AAATTTGCGAGTTGGAAGAC+AGG - chr6_1:90542884-90542903 Msa0897900:intron 40.0%
TCATCAGAGAAGACATGATG+TGG - chr6_1:90543206-90543225 Msa0897900:intron 40.0%
TGATGTGGAAGCTGTGAATA+AGG - chr6_1:90543221-90543240 Msa0897900:intron 40.0%
AAATAGTACACAACCCATGC+AGG + chr6_1:90543744-90543763 None:intergenic 40.0%
CATAGAGTTCTTTCTCTGCT+TGG - chr6_1:90543776-90543795 Msa0897900:intron 40.0%
GTGTCTTGGGTATGTTTGAT+TGG - chr6_1:90543938-90543957 Msa0897900:five_prime_UTR 40.0%
TGGGTATGTTTGATTGGTGT+AGG - chr6_1:90543944-90543963 Msa0897900:five_prime_UTR 40.0%
GGGTATGTTTGATTGGTGTA+GGG - chr6_1:90543945-90543964 Msa0897900:five_prime_UTR 40.0%
GGTATGTTTGATTGGTGTAG+GGG - chr6_1:90543946-90543965 Msa0897900:five_prime_UTR 40.0%
GGCCACTAGCATGTGAAAAT+AGG - chr6_1:90539011-90539030 Msa0897900:three_prime_UTR 45.0%
GAGAAGAGAAGGAACTGATG+TGG + chr6_1:90539104-90539123 None:intergenic 45.0%
CTCTTCTCTCTCTACGATTC+AGG - chr6_1:90539256-90539275 Msa0897900:three_prime_UTR 45.0%
! CTGAGGAAAAGTGAGTTGAG+TGG - chr6_1:90539811-90539830 Msa0897900:CDS 45.0%
CGTAGTACCAAGCATACACT+AGG - chr6_1:90540325-90540344 Msa0897900:CDS 45.0%
GAGTAGTGTGATAGAGCAAG+TGG - chr6_1:90540993-90541012 Msa0897900:intron 45.0%
!! TGATGATGCTTTAGGGACTG+AGG - chr6_1:90541257-90541276 Msa0897900:intron 45.0%
GTAAGTGTCTGCAACTGACA+TGG + chr6_1:90541543-90541562 None:intergenic 45.0%
TCAAAAGATGCAATCTCGCC+AGG - chr6_1:90541659-90541678 Msa0897900:intron 45.0%
AAGTACTCTGCATTACAGGG+GGG + chr6_1:90542054-90542073 None:intergenic 45.0%
ATCCTCACAATCTCAGATGG+AGG - chr6_1:90542090-90542109 Msa0897900:intron 45.0%
TCCTCACAATCTCAGATGGA+GGG - chr6_1:90542091-90542110 Msa0897900:intron 45.0%
TGGTCCTCAACCTGTCAATT+TGG - chr6_1:90542204-90542223 Msa0897900:intron 45.0%
GGAGAGAAGTCCAAATTGAC+AGG + chr6_1:90542217-90542236 None:intergenic 45.0%
GTCAGTTTCAGAATCAGAGG+AGG + chr6_1:90542305-90542324 None:intergenic 45.0%
AATTCATTACCATGGCACGG+CGG - chr6_1:90542342-90542361 Msa0897900:intron 45.0%
GCGGTTAATACTGACGATGA+AGG - chr6_1:90542361-90542380 Msa0897900:intron 45.0%
GTATAAAAAGGGACAGGTGC+TGG - chr6_1:90542639-90542658 Msa0897900:intron 45.0%
ATTGCAAGACCAGCTTGAAG+TGG - chr6_1:90542810-90542829 Msa0897900:intron 45.0%
AGTTGGAAGACAGGATTACC+TGG - chr6_1:90542893-90542912 Msa0897900:intron 45.0%
GGATGAAATGCATGATGTGC+AGG - chr6_1:90542963-90542982 Msa0897900:intron 45.0%
AACACAGTTGACCTCAACAC+TGG - chr6_1:90543047-90543066 Msa0897900:intron 45.0%
GCGATGTGAAGCTGAACATT+TGG - chr6_1:90543113-90543132 Msa0897900:intron 45.0%
GCTGCATGCTACACAACAAA+TGG - chr6_1:90543146-90543165 Msa0897900:intron 45.0%
TCGCTTGATCACTACAAGAG+TGG - chr6_1:90543549-90543568 Msa0897900:intron 45.0%
GGACCAGAAGCTGTTGAAAT+TGG - chr6_1:90543887-90543906 Msa0897900:five_prime_UTR 45.0%
AGTACTCTGCATTACAGGGG+GGG + chr6_1:90542053-90542072 None:intergenic 50.0%
!!! ATGGAGGGCACTGGTGATTT+TGG - chr6_1:90542106-90542125 Msa0897900:intron 50.0%
TGCAATCCCTGCTTCTGGTA+TGG + chr6_1:90542178-90542197 None:intergenic 50.0%
ACTTCTGCAATCCCTGCTTC+TGG + chr6_1:90542183-90542202 None:intergenic 50.0%
AAGCAGGGATTGCAGAAGTC+TGG - chr6_1:90542184-90542203 Msa0897900:intron 50.0%
TTGGACTTCTCTCCTAGCTC+AGG - chr6_1:90542223-90542242 Msa0897900:intron 50.0%
AGAACCCTCCTTGTGAGAAG+CGG + chr6_1:90542263-90542282 None:intergenic 50.0%
GACGATGAAGGAACCACTCA+AGG - chr6_1:90542373-90542392 Msa0897900:intron 50.0%
!! ACAAAGCCAGTTTGTTGGGG+AGG - chr6_1:90542429-90542448 Msa0897900:intron 50.0%
!! CAAAGCCAGTTTGTTGGGGA+GGG - chr6_1:90542430-90542449 Msa0897900:intron 50.0%
!! TTTCCTGTGCCACTTCAAGC+TGG + chr6_1:90542822-90542841 None:intergenic 50.0%
ACAGTTGACCTCAACACTGG+AGG - chr6_1:90543050-90543069 Msa0897900:intron 50.0%
TGACCTCAACACTGGAGGAA+TGG - chr6_1:90543055-90543074 Msa0897900:intron 50.0%
GACCTCAACACTGGAGGAAT+GGG - chr6_1:90543056-90543075 Msa0897900:intron 50.0%
CACGAAGCTGGATAAGCTCT+CGG + chr6_1:90543368-90543387 None:intergenic 50.0%
CCTCTTCTCTTCATCCCGAT+CGG + chr6_1:90543505-90543524 None:intergenic 50.0%
CGATCGGGATGAAGAGAAGA+GGG - chr6_1:90543503-90543522 Msa0897900:intron 50.0%
AAGAGAAGAGGGAGGCAATC+CGG - chr6_1:90543514-90543533 Msa0897900:intron 50.0%
ACAGGCCCCTAGTGTATGCT+TGG + chr6_1:90540335-90540354 None:intergenic 55.0%
GCATACACTAGGGGCCTGTT+TGG - chr6_1:90540336-90540355 Msa0897900:CDS 55.0%
CACTAGGGGCCTGTTTGGAT+TGG - chr6_1:90540341-90540360 Msa0897900:CDS 55.0%
! GCCCTCCATCTGAGATTGTG+AGG + chr6_1:90542095-90542114 None:intergenic 55.0%
! CAATCTCAGATGGAGGGCAC+TGG - chr6_1:90542097-90542116 Msa0897900:intron 55.0%
!!! GGCACTGGTGATTTTGGCGA+AGG - chr6_1:90542112-90542131 Msa0897900:intron 55.0%
GACTTCTCTCCTAGCTCAGG+TGG - chr6_1:90542226-90542245 Msa0897900:intron 55.0%
GAGCTAACACCACCTGAGCT+AGG + chr6_1:90542238-90542257 None:intergenic 55.0%
! TAGCTCTGCCGCTTCTCACA+AGG - chr6_1:90542252-90542271 Msa0897900:intron 55.0%
! TCTGCCGCTTCTCACAAGGA+GGG - chr6_1:90542256-90542275 Msa0897900:intron 55.0%
CAGTATTAACCGCCGTGCCA+TGG + chr6_1:90542354-90542373 None:intergenic 55.0%
TTCCTCCCTCCCCAACAAAC+TGG + chr6_1:90542438-90542457 None:intergenic 55.0%
AGACCAGCTTGAAGTGGCAC+AGG - chr6_1:90542816-90542835 Msa0897900:intron 55.0%
CTCCCATTCCTCCAGTGTTG+AGG + chr6_1:90543061-90543080 None:intergenic 55.0%
CACTCTCTTGTGCACGAAGC+TGG + chr6_1:90543380-90543399 None:intergenic 55.0%
CCGATCGGGATGAAGAGAAG+AGG - chr6_1:90543502-90543521 Msa0897900:intron 55.0%
TCGGGATGAAGAGAAGAGGG+AGG - chr6_1:90543506-90543525 Msa0897900:intron 55.0%
! CAAGCGAGAAGCACAGTTGC+CGG + chr6_1:90543536-90543555 None:intergenic 55.0%
! CTCTGCCGCTTCTCACAAGG+AGG - chr6_1:90542255-90542274 Msa0897900:intron 60.0%
!! AGCCAGTTTGTTGGGGAGGG+AGG - chr6_1:90542433-90542452 Msa0897900:intron 60.0%
Chromosome Type Strat End Strand Name
chr6_1 gene 90538989 90544092 90538989 ID=Msa0897900;Name=Msa0897900
chr6_1 mRNA 90538989 90544092 90538989 ID=Msa0897900-mRNA-1;Parent=Msa0897900;Name=Msa0897900-mRNA-1;_AED=0.35;_eAED=0.35;_QI=289|1|1|1|0|0.5|2|460|508
chr6_1 exon 90538989 90540975 90538989 ID=Msa0897900-mRNA-1:exon:15417;Parent=Msa0897900-mRNA-1
chr6_1 exon 90543804 90544092 90543804 ID=Msa0897900-mRNA-1:exon:15416;Parent=Msa0897900-mRNA-1
chr6_1 five_prime_UTR 90543804 90544092 90543804 ID=Msa0897900-mRNA-1:five_prime_utr;Parent=Msa0897900-mRNA-1
chr6_1 CDS 90539449 90540975 90539449 ID=Msa0897900-mRNA-1:cds;Parent=Msa0897900-mRNA-1
chr6_1 three_prime_UTR 90538989 90539448 90538989 ID=Msa0897900-mRNA-1:three_prime_utr;Parent=Msa0897900-mRNA-1
Gene Sequence

>Msa0897900

ATGGAGGGCACTGGTGATTTTGGCGAAGGTCTTGACCAAGAAAGTTTATTGGTAACTCCATATTATACTCCATACCAGAAGCAGGGATTGCAGAAGTCTGGTCCTCAACCTGTCAATTTGGACTTCTCTCCTAGCTCAGGTGGTGTTAGCTCTGCCGCTTCTCACAAGGAGGGTTCTGAATCAATTTCTTCATCATCCTCCTCTGATTCTGAAACTGACTCTTGTATCAAGTCTGTAATTCATTACCATGGCACGGCGGTTAATACTGACGATGAAGGAACCACTCAAGGTAAGCTGAAAGAAGACCTTGCTGATACCGAAAGACAAAGCCAGTTTGTTGGGGAGGGAGGAAATAATAGTTATGATGAATTGCTGAAGAAGTTCATTAAAAATGAGGAAGAGCTACGAGTTTCCAATTTGAAACTTAAGCTTTCAGAAGAAGAGATTATCAAGTTGAAGAATCAAAATGAGAAAAGTGAGGGTCAGCTTGATAGTGTGCAGAAAGAATTAACACTGAATAAGGATGAACTTGAGTATAAAAAGGGACAGGTGCTGGAGTTGCAAAAGCAAAAAGCTGAGTTGGAGACTCATGTTCCAAATTTGGTGGAACAATTGGAAGTAGCTAACGAACACCTCAAGATATCAAATGATGAAGTTGCAAGATTAAGAAAGGAACTTGGGAGTAGTTCAGCTGAGACTCGTCAATTGCAAGACCAGCTTGAAGTGGCACAGGAAAATGTGACTAAATTAGAATGGCAGCTTGATTCAGGCAGAAAGCAAATTTGCGAGTTGGAAGACAGGATTACCTGGTTTAAAACTAATGAAACTAACCTTGAAATTGAGGTGCAAAAACTGAAGGATGAAATGCATGATGTGCAGGCACAGTTCTCTTTTGAGAAAGATCAATTGCATTCTGATATTGCGAGCTTGTCAGAAATAAAAACACAGTTGACCTCAACACTGGAGGAATGGGAGTCTAGAAGCCATTTATTAGCAAACAAGTTAAGGCGATGTGAAGCTGAACATTTGGAGCAAGAAGAGCTGCATGCTACACAACAAATGGTTATGCAAGGCGAAATCAGTTCATTAAAGGAAGAACTTCATCAGAGAAGACATGATGTGGAAGCTGTGAATAAGGAATTTGACATGCATAAACAGAAATATGACATGCTCATGACTGAAATAGATGAAGCCAATGCCAATATTGATAATCTTAAAGCTGAAATAAGCTTTCGAGATGATCAAATAGCAAATATGGACCGAGAGCTTATCCAGCTTCGTGCACAAGAGAGTGAGCTGATCTCAAGATCTGAAACTAGACTGAATTTAGTAAATGAGTTGAAACTGAAAGTAGAAGAACTTGAAAAAGAGGTGACCAGACAGAATGTTGTGATCTCCGATCGGGATGAAGAGAAGAGGGAGGCAATCCGGCAACTGTGCTTCTCGCTTGATCACTACAAGAGTGGATATAAAGAAATTCTTCAAGCTTTTACTGGTCATAGGCGTCATACTGTTATAGCCTCCTAA
Protein sequence

>Msa0897900

MEGTGDFGEGLDQESLLVTPYYTPYQKQGLQKSGPQPVNLDFSPSSGGVSSAASHKEGSESISSSSSSDSETDSCIKSVIHYHGTAVNTDDEGTTQGKLKEDLADTERQSQFVGEGGNNSYDELLKKFIKNEEELRVSNLKLKLSEEEIIKLKNQNEKSEGQLDSVQKELTLNKDELEYKKGQVLELQKQKAELETHVPNLVEQLEVANEHLKISNDEVARLRKELGSSSAETRQLQDQLEVAQENVTKLEWQLDSGRKQICELEDRITWFKTNETNLEIEVQKLKDEMHDVQAQFSFEKDQLHSDIASLSEIKTQLTSTLEEWESRSHLLANKLRRCEAEHLEQEELHATQQMVMQGEISSLKEELHQRRHDVEAVNKEFDMHKQKYDMLMTEIDEANANIDNLKAEISFRDDQIANMDRELIQLRAQESELISRSETRLNLVNELKLKVEELEKEVTRQNVVISDRDEEKREAIRQLCFSLDHYKSGYKEILQAFTGHRRHTVIAS*