AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0310410


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0310410 MtrunA17_Chr2g0279121 91.557 379 9 2 1 372 1 363 0.0 627
Msa0310410 MtrunA17_Chr5g0402141 88.889 207 12 2 1 196 1 207 2.08e-124 357
Msa0310410 MtrunA17_Chr8g0369281 42.466 73 35 1 289 361 590 655 1.10e-11 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0310410 AT5G09390.1 51.813 386 128 14 3 369 2 348 6.27e-100 300
Msa0310410 AT5G09390.2 51.813 386 126 15 3 369 2 346 9.16e-98 295
Msa0310410 AT3G54230.3 52.632 57 27 0 305 361 291 347 1.22e-11 66.6
Msa0310410 AT3G54230.4 52.632 57 27 0 305 361 527 583 1.73e-11 66.2
Msa0310410 AT3G54230.5 52.632 57 27 0 305 361 571 627 2.06e-11 66.2
Msa0310410 AT3G54230.1 52.632 57 27 0 305 361 571 627 2.06e-11 66.2
Msa0310410 AT3G54230.2 52.632 57 27 0 305 361 572 628 2.10e-11 66.2

Find 110 sgRNAs with CRISPR-Local

Find 341 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCAGAAATAAATTTGAAATT+TGG 0.139199 2_4:-5199425 None:intergenic
CATTAGTAACGTCCTAAATT+TGG 0.196527 2_4:-5199479 None:intergenic
ACCCTCTGTAGAAGAATTAA+TGG 0.205062 2_4:-5197806 None:intergenic
TACATATTCAACAAAGTTTC+CGG 0.210557 2_4:-5195937 None:intergenic
GCAAGAGAAGAAGGCATATC+TGG 0.245769 2_4:+5197682 Msa0310410:CDS
GAGCAATAAAGCCCTGTATT+TGG 0.270672 2_4:-5198182 None:intergenic
AATTGGATAGCTGTTTATTT+TGG 0.274140 2_4:+5199454 Msa0310410:three_prime_UTR
GGTTGCTGAAGTTACATATA+AGG 0.281505 2_4:+5194722 Msa0310410:CDS
CTTCTTCCCTTTCTTTATCT+AGG 0.286299 2_4:-5195899 None:intergenic
CAAGGCTTGAGAAGGTTAAA+AGG 0.290887 2_4:+5196855 Msa0310410:CDS
TTTATTTCTGCTTGTGCAAT+TGG 0.291774 2_4:+5199437 Msa0310410:three_prime_UTR
CCCACACTTTCTACTTGTTT+AGG 0.315628 2_4:+5199242 Msa0310410:three_prime_UTR
ACATGCCCATCAACTCAAAT+TGG 0.319252 2_4:-5199123 None:intergenic
TGTAAGAGATAATGAGATTA+AGG 0.321918 2_4:+5195956 Msa0310410:CDS
CTTTATTGCTCTGCAGCATC+AGG 0.330180 2_4:+5198194 Msa0310410:CDS
TTCTCCACTATTACTTCAAC+TGG 0.331421 2_4:-5194576 None:intergenic
TTCAGATGGATATGAGAAAT+TGG 0.332332 2_4:+5197654 Msa0310410:CDS
TATTATTACAGCAGCAGTTT+GGG 0.342926 2_4:+5198146 Msa0310410:CDS
TGAGGATGCTATGAAGCTTA+TGG 0.343326 2_4:+5196938 Msa0310410:CDS
TATGTGTATGATGAATCTTC+TGG 0.364127 2_4:+5197945 Msa0310410:CDS
TGAGTTGATGGGCATGTCTC+AGG 0.367641 2_4:+5199129 Msa0310410:exon
TTGCATCCAATTTGAGTTGA+TGG 0.369030 2_4:+5199117 Msa0310410:CDS
CGAAAGAGTATGTGTTATAA+AGG 0.377599 2_4:-5199291 None:intergenic
AACGCATAGGCATTAGTAAT+TGG 0.382089 2_4:-5197616 None:intergenic
TATTATTATGATCCAAATAC+AGG 0.383294 2_4:+5198170 Msa0310410:CDS
GAGCTTATCAGTGACGAAAA+TGG 0.385754 2_4:+5194687 Msa0310410:CDS
TATACAGAGCAAAGAGGGTT+AGG 0.385882 2_4:+5194529 Msa0310410:intron
GTTGAACCGCTTCTTCTCTC+TGG 0.387519 2_4:+5194302 Msa0310410:five_prime_UTR
TCAACACAGAAACATGCTAT+TGG 0.397359 2_4:-5199325 None:intergenic
GGTTTCCCTTTCTTCCCCTT+CGG 0.405507 2_4:-5194555 None:intergenic
GTATTATTACAGCAGCAGTT+TGG 0.417915 2_4:+5198145 Msa0310410:CDS
CGCTCTTTCGCAGCAACAGC+CGG 0.424765 2_4:-5194636 None:intergenic
TTCATCTGTAGATGGCTTAG+TGG 0.438911 2_4:-5197752 None:intergenic
CATCTTTAGAAGAAAGCTCT+TGG 0.448194 2_4:-5196148 None:intergenic
TCGTGCTGAGCAGGCTGTTA+TGG 0.448836 2_4:+5199369 Msa0310410:three_prime_UTR
GAGCTTAATCCAGCATATCT+AGG 0.449387 2_4:-5196098 None:intergenic
TGTTTATCATGAACATAAAG+AGG 0.460380 2_4:+5197157 Msa0310410:CDS
AACATGCTATTGGAACTTGC+AGG 0.461195 2_4:-5199315 None:intergenic
CTTTCTTTATCTAGGTTGAA+AGG 0.462334 2_4:-5195891 None:intergenic
TGGAAGGAAGCTTCAATGTC+AGG 0.463768 2_4:+5194322 Msa0310410:exon
AACCTCATTAACTTCATCAT+AGG 0.465828 2_4:-5199096 None:intergenic
AACTTGTGATCGTGCTGAGC+AGG 0.468831 2_4:+5199360 Msa0310410:three_prime_UTR
GCTCTGCAGCATCAGGGAAA+TGG 0.470280 2_4:+5198201 Msa0310410:CDS
CTTTCAACCTAGATAAAGAA+AGG 0.472858 2_4:+5195892 Msa0310410:CDS
TGTCAATGATTTGTCGAATC+CGG 0.476844 2_4:+5194617 Msa0310410:CDS
GAAACCAGTTGAAGTAATAG+TGG 0.478435 2_4:+5194572 Msa0310410:CDS
TACAATCTCTCTCTTTCAGA+TGG 0.489410 2_4:+5197640 Msa0310410:CDS
TGCATCCAATTTGAGTTGAT+GGG 0.491551 2_4:+5199118 Msa0310410:exon
AGGTTTCCGAAGGGGAAGAA+AGG 0.492649 2_4:+5194549 Msa0310410:CDS
ATGGATATGAGAAATTGGTC+AGG 0.501327 2_4:+5197659 Msa0310410:CDS
GGAGAAAGTAATTGCTGAGG+AGG 0.501353 2_4:+5194593 Msa0310410:CDS
ATATGTAACTTCAGCAACCT+TGG 0.504625 2_4:-5194718 None:intergenic
GGCTGTTGCTGCGAAAGAGC+GGG 0.519946 2_4:+5194638 Msa0310410:CDS
GAGGTTGATCCTAGATATGC+TGG 0.521594 2_4:+5196089 Msa0310410:CDS
CTAGATAAAGAAAGGGAAGA+AGG 0.521955 2_4:+5195900 Msa0310410:CDS
TCATAGCATCCTCAGTTAGC+TGG 0.523032 2_4:-5196929 None:intergenic
TTGGTCAGGGCAAGAGAAGA+AGG 0.529893 2_4:+5197673 Msa0310410:CDS
GAGTTGATGGGCATGTCTCA+GGG 0.531488 2_4:+5199130 Msa0310410:exon
GCCATTAATTCTTCTACAGA+GGG 0.535218 2_4:+5197805 Msa0310410:CDS
AAGGATTCTTGCAGGATGCA+TGG 0.536010 2_4:+5196054 Msa0310410:intron
ATGTGTATGATGAATCTTCT+GGG 0.537005 2_4:+5197946 Msa0310410:CDS
TTCCTTCCAGAGAGAAGAAG+CGG 0.538758 2_4:-5194308 None:intergenic
CACCTATGATGAAGTTAATG+AGG 0.540470 2_4:+5199094 Msa0310410:CDS
TTTATTATACAGAGCAAAGA+GGG 0.541213 2_4:+5194524 Msa0310410:intron
TCGTCATCGTCTAAAGGAAG+AGG 0.544997 2_4:-5194376 None:intergenic
GTGGAATCGTCATCGTCTAA+AGG 0.547325 2_4:-5194382 None:intergenic
TGCCATTAATTCTTCTACAG+AGG 0.548389 2_4:+5197804 Msa0310410:CDS
CAAGAGAAGAAGGCATATCT+GGG 0.549609 2_4:+5197683 Msa0310410:CDS
GGCAGCTTGTCCGTCATCAT+CGG 0.552049 2_4:-5197731 None:intergenic
TTTCAACCTAGATAAAGAAA+GGG 0.555045 2_4:+5195893 Msa0310410:CDS
GAATTAATGGCATCTGATGA+TGG 0.555391 2_4:-5197793 None:intergenic
CGGCTGTTGCTGCGAAAGAG+CGG 0.557075 2_4:+5194637 Msa0310410:CDS
AACCGCTTCTTCTCTCTGGA+AGG 0.559795 2_4:+5194306 Msa0310410:five_prime_UTR
CTGCGAAAGAGCGGGTGAAG+CGG 0.567662 2_4:+5194646 Msa0310410:CDS
GCTATGAAGCTTATGGAGAA+TGG 0.574184 2_4:+5196945 Msa0310410:CDS
GGTTTCCGAAGGGGAAGAAA+GGG 0.574562 2_4:+5194550 Msa0310410:CDS
AGGTCTTACAAGGCTTGAGA+AGG 0.577124 2_4:+5196847 Msa0310410:intron
TGTTTCTGTACATATGCCAC+TGG 0.579615 2_4:-5199194 None:intergenic
AGAGAGATTGTAAAACGCAT+AGG 0.580839 2_4:-5197629 None:intergenic
CGAAAGAGCGGGTGAAGCGG+AGG 0.581582 2_4:+5194649 Msa0310410:CDS
AAAGAGGGTTAGGTTTCCGA+AGG 0.583233 2_4:+5194539 Msa0310410:CDS
ACCTAAACAAGTAGAAAGTG+TGG 0.583357 2_4:-5199243 None:intergenic
AAGGAAGAGGGCGTTTGCCG+CGG 0.585989 2_4:-5194363 None:intergenic
ACTTGTTTAGGTGCTAATGC+CGG 0.590314 2_4:+5199254 Msa0310410:three_prime_UTR
TGTGGCAACAAATGATGAAG+AGG 0.599994 2_4:+5196121 Msa0310410:CDS
TTGAGAAGGTTAAAAGGCAG+CGG 0.601512 2_4:+5196861 Msa0310410:CDS
AGAGCTTTCTTCTAAAGATG+TGG 0.604642 2_4:+5196151 Msa0310410:CDS
TCACAATCATTGTCTTCCAG+TGG 0.607276 2_4:+5199178 Msa0310410:three_prime_UTR
GAAGGTTCATCTCGCAGCCG+CGG 0.611291 2_4:+5194346 Msa0310410:CDS
GAAGCTTCAATGTCAGGTGA+AGG 0.616621 2_4:+5194328 Msa0310410:exon
ATTTATTATACAGAGCAAAG+AGG 0.622204 2_4:+5194523 Msa0310410:intron
GATATGTTTGCCGATGATGA+CGG 0.625638 2_4:+5197721 Msa0310410:CDS
AGTTGATGGGCATGTCTCAG+GGG 0.627121 2_4:+5199131 Msa0310410:exon
TTTATTGCTCTGCAGCATCA+GGG 0.627159 2_4:+5198195 Msa0310410:CDS
AGTGGAGAAAGTAATTGCTG+AGG 0.631361 2_4:+5194590 Msa0310410:CDS
GGCAACAAATGATGAAGAGG+AGG 0.636640 2_4:+5196124 Msa0310410:CDS
AAGAGGGTTAGGTTTCCGAA+GGG 0.638652 2_4:+5194540 Msa0310410:CDS
CGTCATCGTCTAAAGGAAGA+GGG 0.640801 2_4:-5194375 None:intergenic
TGGATATGAGAAATTGGTCA+GGG 0.642321 2_4:+5197660 Msa0310410:CDS
AAGATGTGGCAATCATGAAG+AGG 0.647170 2_4:+5196165 Msa0310410:CDS
CGAAAATGGAGGTATCTCCA+AGG 0.648366 2_4:+5194701 Msa0310410:CDS
TGTATTTGACCAGCTAACTG+AGG 0.659418 2_4:+5196920 Msa0310410:CDS
TGCATGGCTTGATAATGTTG+AGG 0.660639 2_4:+5196070 Msa0310410:CDS
CTTATCAGTGACGAAAATGG+AGG 0.666680 2_4:+5194690 Msa0310410:CDS
AGAAGGCATATCTGGGAACA+CGG 0.667646 2_4:+5197690 Msa0310410:CDS
ATTATTATGATCCAAATACA+GGG 0.667789 2_4:+5198171 Msa0310410:CDS
AGAGGGTTAGGTTTCCGAAG+GGG 0.676923 2_4:+5194541 Msa0310410:CDS
CCTAAACAAGTAGAAAGTGT+GGG 0.677781 2_4:-5199242 None:intergenic
TTTCAGCTTCTACACAGACG+AGG 0.692973 2_4:-5194277 None:intergenic
ATATGCTGGATTAAGCTCTG+TGG 0.715071 2_4:+5196103 Msa0310410:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TGGAATATATATTTTTTTTT+TGG - chr2_4:5195543-5195562 None:intergenic 10.0%
!!! CTTTTATTTTTAAGAAAATT+TGG - chr2_4:5196626-5196645 None:intergenic 10.0%
!!! TTATTTTCAAAAAAAGTATA+CGG - chr2_4:5197985-5198004 None:intergenic 10.0%
!! TTCTTTATATTATATAGATT+AGG + chr2_4:5198794-5198813 Msa0310410:intron 10.0%
!!! ATAATAATGGAATCAAATTA+GGG - chr2_4:5194451-5194470 None:intergenic 15.0%
!!! AATAATAATGGAATCAAATT+AGG - chr2_4:5194452-5194471 None:intergenic 15.0%
!!! TTCTCTTATATAGTAATTTT+AGG - chr2_4:5195276-5195295 None:intergenic 15.0%
!!! AATAATTTGTATTTGTTGTA+TGG + chr2_4:5195629-5195648 Msa0310410:intron 15.0%
!!! AAACCTTTAAATTATTCTTT+TGG + chr2_4:5196346-5196365 Msa0310410:intron 15.0%
!! TTACCAAAAGAATAATTTAA+AGG - chr2_4:5196352-5196371 None:intergenic 15.0%
!! ACATAATAAAAATAAAGCAA+AGG - chr2_4:5197220-5197239 None:intergenic 15.0%
!! AATTATGTCATTAAAATACA+TGG - chr2_4:5197352-5197371 None:intergenic 15.0%
!!! TCATCTTTAATGTTTTTAAT+CGG + chr2_4:5197884-5197903 Msa0310410:intron 15.0%
!! CAACAAACTCATAATAATAA+TGG - chr2_4:5194464-5194483 None:intergenic 20.0%
!! AATAAACCAATTCATCAAAT+AGG + chr2_4:5195029-5195048 Msa0310410:intron 20.0%
!! GAATACATTATTTGAACAAA+TGG + chr2_4:5195092-5195111 Msa0310410:intron 20.0%
!! TTGAACAAATGGATAAAAAA+AGG + chr2_4:5195103-5195122 Msa0310410:intron 20.0%
!!! TTGTAACATTTTTCTGTTAA+TGG + chr2_4:5195150-5195169 Msa0310410:intron 20.0%
!! GTTATAAGAATATGCTTATA+TGG + chr2_4:5195201-5195220 Msa0310410:intron 20.0%
!! ACTTAGAACATTTCATTAAT+TGG + chr2_4:5195572-5195591 Msa0310410:intron 20.0%
!! ATTCAATTAATAAGTTGTCA+AGG + chr2_4:5196035-5196054 Msa0310410:intron 20.0%
!! TGAATCAAATGATAAAACAT+AGG - chr2_4:5196230-5196249 None:intergenic 20.0%
!! TTATCATTTGATTCATTCTT+AGG + chr2_4:5196235-5196254 Msa0310410:intron 20.0%
!! AATTTGTAATTAGTGACAAT+AGG + chr2_4:5196289-5196308 Msa0310410:intron 20.0%
!!! AAATTTCCCTTTTTGATTTT+CGG - chr2_4:5196474-5196493 None:intergenic 20.0%
!!! GTACATACTTATTTTGTTAA+GGG + chr2_4:5196776-5196795 Msa0310410:intron 20.0%
!!! TAATTGATATCTTTTCCAAT+AGG + chr2_4:5196827-5196846 Msa0310410:intron 20.0%
!!! TTTTCTTATTATAACACTGA+TGG - chr2_4:5197431-5197450 None:intergenic 20.0%
!!! CTTTTACATCATTAAATCAT+AGG - chr2_4:5198031-5198050 None:intergenic 20.0%
!! TATTATTATGATCCAAATAC+AGG + chr2_4:5198170-5198189 Msa0310410:CDS 20.0%
!! ATTATTATGATCCAAATACA+GGG + chr2_4:5198171-5198190 Msa0310410:CDS 20.0%
!!! TTTACTTTAAGTTTGATCTT+GGG + chr2_4:5198416-5198435 Msa0310410:intron 20.0%
!!! GTTTATTTTTGTTTAAACAC+AGG + chr2_4:5199048-5199067 Msa0310410:intron 20.0%
!!! GCAGAAATAAATTTGAAATT+TGG - chr2_4:5199428-5199447 None:intergenic 20.0%
! AAGAAGAAGAAGAAGAATTA+CGG - chr2_4:5194418-5194437 None:intergenic 25.0%
! ATTTATTATACAGAGCAAAG+AGG + chr2_4:5194523-5194542 Msa0310410:intron 25.0%
! TTTATTATACAGAGCAAAGA+GGG + chr2_4:5194524-5194543 Msa0310410:intron 25.0%
!!! AGGTTTGTTCTTTGTTTTTT+AGG + chr2_4:5194742-5194761 Msa0310410:intron 25.0%
!!! GTTTTTGTGTTGATAGATAA+TGG + chr2_4:5194776-5194795 Msa0310410:intron 25.0%
! TAAGTTTCGTAAGACTATTT+GGG - chr2_4:5194990-5195009 None:intergenic 25.0%
! ATAAGTTTCGTAAGACTATT+TGG - chr2_4:5194991-5195010 None:intergenic 25.0%
! GTCAAATTACAAAACAATCA+TGG - chr2_4:5195740-5195759 None:intergenic 25.0%
! TTTCAACCTAGATAAAGAAA+GGG + chr2_4:5195893-5195912 Msa0310410:CDS 25.0%
! TACATATTCAACAAAGTTTC+CGG - chr2_4:5195940-5195959 None:intergenic 25.0%
! TGTAAGAGATAATGAGATTA+AGG + chr2_4:5195956-5195975 Msa0310410:CDS 25.0%
!! GAATAATTTAAAGGTTTGCT+TGG - chr2_4:5196343-5196362 None:intergenic 25.0%
! GATACCCTTTAAACATTTAT+TGG + chr2_4:5196389-5196408 Msa0310410:intron 25.0%
! CTAGCCAATAAATGTTTAAA+GGG - chr2_4:5196396-5196415 None:intergenic 25.0%
! TGTAAGAAGTTATATTAGCT+TGG + chr2_4:5196660-5196679 Msa0310410:intron 25.0%
! TCAATTAAAGTGATTTCCAA+TGG - chr2_4:5196743-5196762 None:intergenic 25.0%
! TTGGAAATCACTTTAATTGA+CGG + chr2_4:5196743-5196762 Msa0310410:intron 25.0%
!!! CGTACATACTTATTTTGTTA+AGG + chr2_4:5196775-5196794 Msa0310410:intron 25.0%
! TGTTTATCATGAACATAAAG+AGG + chr2_4:5197157-5197176 Msa0310410:CDS 25.0%
! GTCACAAAACATAAAAGTAA+AGG - chr2_4:5197261-5197280 None:intergenic 25.0%
! TTATTATAACACTGATGGTA+CGG - chr2_4:5197426-5197445 None:intergenic 25.0%
!! AAGTTTAAAGCTTAATGTGA+TGG - chr2_4:5197466-5197485 None:intergenic 25.0%
!!! TCACATTAAGCTTTAAACTT+AGG + chr2_4:5197466-5197485 Msa0310410:intron 25.0%
!!! CACATTAAGCTTTAAACTTA+GGG + chr2_4:5197467-5197486 Msa0310410:intron 25.0%
!!! ACATTAAGCTTTAAACTTAG+GGG + chr2_4:5197468-5197487 Msa0310410:intron 25.0%
! TACGTTGATATCATTATTCA+TGG - chr2_4:5197544-5197563 None:intergenic 25.0%
! TATCAACGTATAGATTTACA+AGG + chr2_4:5197554-5197573 Msa0310410:intron 25.0%
! AAACATTGTCTCTATAACTT+TGG + chr2_4:5197831-5197850 Msa0310410:intron 25.0%
! TTTAAATCCTAATCCTATTC+TGG + chr2_4:5198338-5198357 Msa0310410:intron 25.0%
! AATATCTATCTAACCAGAAT+AGG - chr2_4:5198354-5198373 None:intergenic 25.0%
! TACAAATAATGCATGTTTCT+AGG - chr2_4:5198395-5198414 None:intergenic 25.0%
!! CTTTACTTTAAGTTTGATCT+TGG + chr2_4:5198415-5198434 Msa0310410:intron 25.0%
! ATAGACAATGCTATTGTTAT+AGG + chr2_4:5198647-5198666 Msa0310410:intron 25.0%
!! CTCTTGTTTATCTATAACTT+AGG + chr2_4:5198713-5198732 Msa0310410:intron 25.0%
! TACAACATTAAAACTCTAGA+GGG - chr2_4:5198868-5198887 None:intergenic 25.0%
! ATACAACATTAAAACTCTAG+AGG - chr2_4:5198869-5198888 None:intergenic 25.0%
!!! AGTTTTAATGTTGTATTTCC+TGG + chr2_4:5198873-5198892 Msa0310410:intron 25.0%
!!! GTTTTAATGTTGTATTTCCT+GGG + chr2_4:5198874-5198893 Msa0310410:intron 25.0%
!! TATTTTCTGCATTTAGTGAT+CGG + chr2_4:5198978-5198997 Msa0310410:intron 25.0%
!! AATTGGATAGCTGTTTATTT+TGG + chr2_4:5199454-5199473 Msa0310410:three_prime_UTR 25.0%
!! GTTGTTTTCATAAGCTATCT+TGG + chr2_4:5194912-5194931 Msa0310410:intron 30.0%
!! AAGATGTTTTCAGCTGATTT+TGG - chr2_4:5194946-5194965 None:intergenic 30.0%
! AATCTCATGTTCTGAACATT+GGG - chr2_4:5195055-5195074 None:intergenic 30.0%
! AAATCTCATGTTCTGAACAT+TGG - chr2_4:5195056-5195075 None:intergenic 30.0%
!! ATAAAAAAAGGTACTGTGAG+TGG + chr2_4:5195115-5195134 Msa0310410:intron 30.0%
!! GAATTAAGAATGTTCTAGAG+TGG + chr2_4:5195172-5195191 Msa0310410:intron 30.0%
TAGTCAAATTACTACACTAG+AGG + chr2_4:5195240-5195259 Msa0310410:intron 30.0%
CTGGAATATATCAACAAGAT+CGG - chr2_4:5195384-5195403 None:intergenic 30.0%
GTAAAAATGCCGAAATTGTT+AGG + chr2_4:5195432-5195451 Msa0310410:intron 30.0%
TTTCATTAATTGGCAATGCT+TGG + chr2_4:5195582-5195601 Msa0310410:intron 30.0%
TGTTCAAATGAACATGTCAT+TGG + chr2_4:5195779-5195798 Msa0310410:intron 30.0%
GTTCAAATGAACATGTCATT+GGG + chr2_4:5195780-5195799 Msa0310410:intron 30.0%
ATGTCATTGGGTTCATATTA+AGG + chr2_4:5195792-5195811 Msa0310410:intron 30.0%
ATTGGGTTCATATTAAGGAT+AGG + chr2_4:5195797-5195816 Msa0310410:intron 30.0%
TGCAGATTAATAATGTGTGT+TGG + chr2_4:5195826-5195845 Msa0310410:intron 30.0%
! GGAAAATGAGAATTTTGTTG+AGG + chr2_4:5195851-5195870 Msa0310410:intron 30.0%
! AATGAGAATTTTGTTGAGGA+CGG + chr2_4:5195855-5195874 Msa0310410:CDS 30.0%
! CTTTCTTTATCTAGGTTGAA+AGG - chr2_4:5195894-5195913 None:intergenic 30.0%
CTTTCAACCTAGATAAAGAA+AGG + chr2_4:5195892-5195911 Msa0310410:CDS 30.0%
! TCTTTTGGTAAACATTGTTG+AGG + chr2_4:5196361-5196380 Msa0310410:intron 30.0%
! CTTTTGGTAAACATTGTTGA+GGG + chr2_4:5196362-5196381 Msa0310410:intron 30.0%
GCTAGCCAATAAATGTTTAA+AGG - chr2_4:5196397-5196416 None:intergenic 30.0%
TCCTCTTAATGTGTAAAGAA+TGG + chr2_4:5196420-5196439 Msa0310410:intron 30.0%
CCTCTTAATGTGTAAAGAAT+GGG + chr2_4:5196421-5196440 Msa0310410:intron 30.0%
AGAATGGGTAATATTGAAGT+TGG + chr2_4:5196436-5196455 Msa0310410:intron 30.0%
GTAATATTGAAGTTGGAACT+AGG + chr2_4:5196443-5196462 Msa0310410:intron 30.0%
!! TTTGCTGTTAATTCCATAGT+AGG + chr2_4:5196491-5196510 Msa0310410:intron 30.0%
GAGAAAAACAGTTATATGTC+AGG - chr2_4:5196537-5196556 None:intergenic 30.0%
! ATTTTGTTAAGGGATGTTGA+AGG + chr2_4:5196786-5196805 Msa0310410:intron 30.0%
GATAGAAAGACAAAAATGTC+TGG + chr2_4:5196885-5196904 Msa0310410:CDS 30.0%
TTCAGTTAAGTCATTCTCAT+TGG + chr2_4:5196972-5196991 Msa0310410:intron 30.0%
TCAGTTAAGTCATTCTCATT+GGG + chr2_4:5196973-5196992 Msa0310410:intron 30.0%
ATAAATACATGTCTTAGCCA+TGG - chr2_4:5197014-5197033 None:intergenic 30.0%
TATTTATTATGACAGCCTGA+TGG + chr2_4:5197027-5197046 Msa0310410:intron 30.0%
TACCACATGATGCTTAATAT+TGG + chr2_4:5197099-5197118 Msa0310410:intron 30.0%
! GAGTTACTTTATTAACACGA+TGG + chr2_4:5197300-5197319 Msa0310410:intron 30.0%
TAATTCTATTCCACTTGTGT+TGG + chr2_4:5197367-5197386 Msa0310410:intron 30.0%
TTCAGATGGATATGAGAAAT+TGG + chr2_4:5197654-5197673 Msa0310410:CDS 30.0%
! GCATTATTTTCATCTGTAGA+TGG - chr2_4:5197763-5197782 None:intergenic 30.0%
TATAACTTTGGCATCTGAAA+TGG + chr2_4:5197843-5197862 Msa0310410:intron 30.0%
TATGTGTATGATGAATCTTC+TGG + chr2_4:5197945-5197964 Msa0310410:CDS 30.0%
ATGTGTATGATGAATCTTCT+GGG + chr2_4:5197946-5197965 Msa0310410:CDS 30.0%
ATCTGACATCAGTTGTTTAT+TGG + chr2_4:5198117-5198136 Msa0310410:intron 30.0%
TATTATTACAGCAGCAGTTT+GGG + chr2_4:5198146-5198165 Msa0310410:CDS 30.0%
TATCTAACCAGAATAGGATT+AGG - chr2_4:5198348-5198367 None:intergenic 30.0%
AAGAATATGCCAATAGTTAG+AGG + chr2_4:5198487-5198506 Msa0310410:intron 30.0%
AGAATATGCCAATAGTTAGA+GGG + chr2_4:5198488-5198507 Msa0310410:intron 30.0%
! AACTTAGGCTCTTGAATTTT+TGG + chr2_4:5198728-5198747 Msa0310410:intron 30.0%
! ACTTAGGCTCTTGAATTTTT+GGG + chr2_4:5198729-5198748 Msa0310410:intron 30.0%
TTAACAAGATCTATCCAACA+TGG - chr2_4:5198758-5198777 None:intergenic 30.0%
ATAGATCTTGTTAAAGTAGC+TGG + chr2_4:5198764-5198783 Msa0310410:intron 30.0%
AAACTATACAGATACTACTC+AGG - chr2_4:5198959-5198978 None:intergenic 30.0%
AACCTCATTAACTTCATCAT+AGG - chr2_4:5199099-5199118 None:intergenic 30.0%
! CGAAAGAGTATGTGTTATAA+AGG - chr2_4:5199294-5199313 None:intergenic 30.0%
!! TTTATTTCTGCTTGTGCAAT+TGG + chr2_4:5199437-5199456 Msa0310410:three_prime_UTR 30.0%
!!! TTTATTTTGGCGCCAAATTT+AGG + chr2_4:5199467-5199486 Msa0310410:three_prime_UTR 30.0%
CATTAGTAACGTCCTAAATT+TGG - chr2_4:5199482-5199501 None:intergenic 30.0%
!! GAAGAATTACGGTGGATTTT+TGG - chr2_4:5194407-5194426 None:intergenic 35.0%
AAGAAGAAGAAGAATTACGG+TGG - chr2_4:5194415-5194434 None:intergenic 35.0%
GAAACCAGTTGAAGTAATAG+TGG + chr2_4:5194572-5194591 Msa0310410:CDS 35.0%
TTCTCCACTATTACTTCAAC+TGG - chr2_4:5194579-5194598 None:intergenic 35.0%
! TGTCAATGATTTGTCGAATC+CGG + chr2_4:5194617-5194636 Msa0310410:CDS 35.0%
ATATGTAACTTCAGCAACCT+TGG - chr2_4:5194721-5194740 None:intergenic 35.0%
GGTTGCTGAAGTTACATATA+AGG + chr2_4:5194722-5194741 Msa0310410:CDS 35.0%
TCTTACGAAACTTATGCCTT+GGG + chr2_4:5194996-5195015 Msa0310410:intron 35.0%
TTTATTTGAGCTTATCCCCA+AGG - chr2_4:5195015-5195034 None:intergenic 35.0%
ATTGGGCCTATTTGATGAAT+TGG - chr2_4:5195038-5195057 None:intergenic 35.0%
TAGGACTTATGAGACAAAAC+TGG - chr2_4:5195403-5195422 None:intergenic 35.0%
ATAAACTCACACACACAAAG+TGG - chr2_4:5195494-5195513 None:intergenic 35.0%
TTGTGTGTGTGAGTTTATGA+TGG + chr2_4:5195496-5195515 Msa0310410:intron 35.0%
!! ATGTTCTAAGTGCTGAAAAC+TGG - chr2_4:5195563-5195582 None:intergenic 35.0%
! GATTAATAATGTGTGTTGGC+AGG + chr2_4:5195830-5195849 Msa0310410:intron 35.0%
CTTCTTCCCTTTCTTTATCT+AGG - chr2_4:5195902-5195921 None:intergenic 35.0%
CTAGATAAAGAAAGGGAAGA+AGG + chr2_4:5195900-5195919 Msa0310410:CDS 35.0%
!!! GAAGGTTATTTTGATGCATC+CGG + chr2_4:5195918-5195937 Msa0310410:CDS 35.0%
GAGATAATGAGATTAAGGTG+AGG + chr2_4:5195961-5195980 Msa0310410:intron 35.0%
! CATCTTTAGAAGAAAGCTCT+TGG - chr2_4:5196151-5196170 None:intergenic 35.0%
! AGAGCTTTCTTCTAAAGATG+TGG + chr2_4:5196151-5196170 Msa0310410:CDS 35.0%
CCCATTCTTTACACATTAAG+AGG - chr2_4:5196424-5196443 None:intergenic 35.0%
GAACTGCCGAAAATCAAAAA+GGG + chr2_4:5196465-5196484 Msa0310410:intron 35.0%
TAACAGAGAATAGCCTACTA+TGG - chr2_4:5196507-5196526 None:intergenic 35.0%
! ATCCCCAATTTGGCTTAAAA+AGG + chr2_4:5196595-5196614 Msa0310410:intron 35.0%
! TCCCCAATTTGGCTTAAAAA+GGG + chr2_4:5196596-5196615 Msa0310410:intron 35.0%
TTCTCTTAAAGTCTTGCCAT+TGG + chr2_4:5196724-5196743 Msa0310410:intron 35.0%
! CTTTTCCAATAGGTCTTACA+AGG + chr2_4:5196837-5196856 Msa0310410:intron 35.0%
AGCCAATATTAAGCATCATG+TGG - chr2_4:5197104-5197123 None:intergenic 35.0%
ATTAACACGATGGAATATGC+TGG + chr2_4:5197310-5197329 Msa0310410:intron 35.0%
! TTCCACTTGTGTTGGTATTA+TGG + chr2_4:5197375-5197394 Msa0310410:intron 35.0%
! ACTTGTGTTGGTATTATGGT+CGG + chr2_4:5197379-5197398 Msa0310410:intron 35.0%
ATTGAGATTAACTAATGCCC+AGG - chr2_4:5197502-5197521 None:intergenic 35.0%
TTTACAAGGACTGAAAAGCA+AGG + chr2_4:5197568-5197587 Msa0310410:intron 35.0%
!! GGAATGCTACATGTTTTTGT+AGG + chr2_4:5197589-5197608 Msa0310410:intron 35.0%
AACGCATAGGCATTAGTAAT+TGG - chr2_4:5197619-5197638 None:intergenic 35.0%
AGAGAGATTGTAAAACGCAT+AGG - chr2_4:5197632-5197651 None:intergenic 35.0%
TACAATCTCTCTCTTTCAGA+TGG + chr2_4:5197640-5197659 Msa0310410:CDS 35.0%
ATGGATATGAGAAATTGGTC+AGG + chr2_4:5197659-5197678 Msa0310410:CDS 35.0%
TGGATATGAGAAATTGGTCA+GGG + chr2_4:5197660-5197679 Msa0310410:CDS 35.0%
GAATTAATGGCATCTGATGA+TGG - chr2_4:5197796-5197815 None:intergenic 35.0%
TGCCATTAATTCTTCTACAG+AGG + chr2_4:5197804-5197823 Msa0310410:CDS 35.0%
GCCATTAATTCTTCTACAGA+GGG + chr2_4:5197805-5197824 Msa0310410:CDS 35.0%
ACCCTCTGTAGAAGAATTAA+TGG - chr2_4:5197809-5197828 None:intergenic 35.0%
GTATTATTACAGCAGCAGTT+TGG + chr2_4:5198145-5198164 Msa0310410:CDS 35.0%
!! AGGCAAGTTGATGTTTAAGA+AGG - chr2_4:5198297-5198316 None:intergenic 35.0%
AGCAAAGAACTCACATCTAA+AGG - chr2_4:5198317-5198336 None:intergenic 35.0%
! ATTTTTCCATTAGGTAGGGT+TGG - chr2_4:5198596-5198615 None:intergenic 35.0%
! GGACATTTTTCCATTAGGTA+GGG - chr2_4:5198600-5198619 None:intergenic 35.0%
! TAGTGGGACATTTTTCCATT+AGG - chr2_4:5198605-5198624 None:intergenic 35.0%
!!! GAATTTTTGGGATTCCATGT+TGG + chr2_4:5198741-5198760 Msa0310410:intron 35.0%
TTTAGTGATCGGATCATTCT+TGG + chr2_4:5198989-5199008 Msa0310410:intron 35.0%
TAATTGTCTTTGTAGCTCAC+TGG + chr2_4:5199021-5199040 Msa0310410:intron 35.0%
AATTGTCTTTGTAGCTCACT+GGG + chr2_4:5199022-5199041 Msa0310410:intron 35.0%
CACCTATGATGAAGTTAATG+AGG + chr2_4:5199094-5199113 Msa0310410:CDS 35.0%
!! TTGCATCCAATTTGAGTTGA+TGG + chr2_4:5199117-5199136 Msa0310410:CDS 35.0%
!! TGCATCCAATTTGAGTTGAT+GGG + chr2_4:5199118-5199137 Msa0310410:exon 35.0%
! CCTAAACAAGTAGAAAGTGT+GGG - chr2_4:5199245-5199264 None:intergenic 35.0%
ACCTAAACAAGTAGAAAGTG+TGG - chr2_4:5199246-5199265 None:intergenic 35.0%
TCAACACAGAAACATGCTAT+TGG - chr2_4:5199328-5199347 None:intergenic 35.0%
!! GAATTACGGTGGATTTTTGG+TGG - chr2_4:5194404-5194423 None:intergenic 40.0%
TATACAGAGCAAAGAGGGTT+AGG + chr2_4:5194529-5194548 Msa0310410:intron 40.0%
AGTGGAGAAAGTAATTGCTG+AGG + chr2_4:5194590-5194609 Msa0310410:CDS 40.0%
GAGCTTATCAGTGACGAAAA+TGG + chr2_4:5194687-5194706 Msa0310410:CDS 40.0%
CTTATCAGTGACGAAAATGG+AGG + chr2_4:5194690-5194709 Msa0310410:CDS 40.0%
GTCTTACGAAACTTATGCCT+TGG + chr2_4:5194995-5195014 Msa0310410:intron 40.0%
CTTACGAAACTTATGCCTTG+GGG + chr2_4:5194997-5195016 Msa0310410:intron 40.0%
TGCTTATATGGTGTACGAGA+TGG + chr2_4:5195213-5195232 Msa0310410:intron 40.0%
TTATATGGTGTACGAGATGG+AGG + chr2_4:5195216-5195235 Msa0310410:intron 40.0%
TATATGGTGTACGAGATGGA+GGG + chr2_4:5195217-5195236 Msa0310410:intron 40.0%
ACTACACTAGAGGTAGAGTA+AGG + chr2_4:5195250-5195269 Msa0310410:intron 40.0%
ACAACGTTGTTTGATCCATG+TGG + chr2_4:5195358-5195377 Msa0310410:intron 40.0%
! GCATTTTTACCAGTTGAGCT+AGG - chr2_4:5195422-5195441 None:intergenic 40.0%
AAATGCCGAAATTGTTAGGC+CGG + chr2_4:5195436-5195455 Msa0310410:intron 40.0%
! TTGTGAAGTTTAGAGCCAGT+TGG + chr2_4:5195690-5195709 Msa0310410:intron 40.0%
! TGTGAAGTTTAGAGCCAGTT+GGG + chr2_4:5195691-5195710 Msa0310410:intron 40.0%
GCATTTGAACTAAACCCAAC+TGG - chr2_4:5195708-5195727 None:intergenic 40.0%
GGTTCATATTAAGGATAGGC+AGG + chr2_4:5195801-5195820 Msa0310410:intron 40.0%
AAGTTGTCAAGGATTCTTGC+AGG + chr2_4:5196046-5196065 Msa0310410:intron 40.0%
!! TGCATGGCTTGATAATGTTG+AGG + chr2_4:5196070-5196089 Msa0310410:CDS 40.0%
GAGCTTAATCCAGCATATCT+AGG - chr2_4:5196101-5196120 None:intergenic 40.0%
ATATGCTGGATTAAGCTCTG+TGG + chr2_4:5196103-5196122 Msa0310410:CDS 40.0%
TGTGGCAACAAATGATGAAG+AGG + chr2_4:5196121-5196140 Msa0310410:CDS 40.0%
AAGATGTGGCAATCATGAAG+AGG + chr2_4:5196165-5196184 Msa0310410:CDS 40.0%
TGCAAATGTTCTTGAACCAG+AGG + chr2_4:5196193-5196212 Msa0310410:intron 40.0%
ATAGGACTTACTGTTTCCTC+TGG - chr2_4:5196212-5196231 None:intergenic 40.0%
GGAACTGCCGAAAATCAAAA+AGG + chr2_4:5196464-5196483 Msa0310410:intron 40.0%
!! AACTGTTTTTCTCTCCCTCA+TGG + chr2_4:5196544-5196563 Msa0310410:intron 40.0%
! TTTTTCTCTGCCAACCATGA+GGG - chr2_4:5196561-5196580 None:intergenic 40.0%
GCAGAGAAAAACCAGGTAAT+CGG + chr2_4:5196570-5196589 Msa0310410:intron 40.0%
GTAATCGGTAATCCCCAATT+TGG + chr2_4:5196585-5196604 Msa0310410:intron 40.0%
!! CCCCTTTTTAAGCCAAATTG+GGG - chr2_4:5196600-5196619 None:intergenic 40.0%
! CCCCAATTTGGCTTAAAAAG+GGG + chr2_4:5196597-5196616 Msa0310410:intron 40.0%
!! CCCCCTTTTTAAGCCAAATT+GGG - chr2_4:5196601-5196620 None:intergenic 40.0%
! CCCAATTTGGCTTAAAAAGG+GGG + chr2_4:5196598-5196617 Msa0310410:intron 40.0%
!! ACCCCCTTTTTAAGCCAAAT+TGG - chr2_4:5196602-5196621 None:intergenic 40.0%
GGATGTTGAAGGTCATTTGT+TGG + chr2_4:5196797-5196816 Msa0310410:intron 40.0%
! TCAAGCCTTGTAAGACCTAT+TGG - chr2_4:5196845-5196864 None:intergenic 40.0%
CAAGGCTTGAGAAGGTTAAA+AGG + chr2_4:5196855-5196874 Msa0310410:CDS 40.0%
TTGAGAAGGTTAAAAGGCAG+CGG + chr2_4:5196861-5196880 Msa0310410:CDS 40.0%
TGTATTTGACCAGCTAACTG+AGG + chr2_4:5196920-5196939 Msa0310410:CDS 40.0%
TGAGGATGCTATGAAGCTTA+TGG + chr2_4:5196938-5196957 Msa0310410:CDS 40.0%
GCTATGAAGCTTATGGAGAA+TGG + chr2_4:5196945-5196964 Msa0310410:CDS 40.0%
! GGCTTTGTAGATATTGTCCA+TGG + chr2_4:5196994-5197013 Msa0310410:intron 40.0%
!! ACAAAGACAAAGGTACCATC+AGG - chr2_4:5197045-5197064 None:intergenic 40.0%
GACCATAATACCAACACAAG+TGG - chr2_4:5197380-5197399 None:intergenic 40.0%
! CTTGTGTTGGTATTATGGTC+GGG + chr2_4:5197380-5197399 Msa0310410:intron 40.0%
! GCTTTAAACTTAGGGGAAGT+TGG + chr2_4:5197475-5197494 Msa0310410:intron 40.0%
! CAAGAGAAGAAGGCATATCT+GGG + chr2_4:5197683-5197702 Msa0310410:CDS 40.0%
GATATGTTTGCCGATGATGA+CGG + chr2_4:5197721-5197740 Msa0310410:CDS 40.0%
TTCATCTGTAGATGGCTTAG+TGG - chr2_4:5197755-5197774 None:intergenic 40.0%
!! TCGGTTCTACTTTTCTTTCC+AGG + chr2_4:5197903-5197922 Msa0310410:intron 40.0%
!! GTTCTACTTTTCTTTCCAGG+CGG + chr2_4:5197906-5197925 Msa0310410:intron 40.0%
CATCAGTTGTTTATTGGTCC+AGG + chr2_4:5198123-5198142 Msa0310410:intron 40.0%
ACTGCTGCTGTAATAATACC+TGG - chr2_4:5198144-5198163 None:intergenic 40.0%
GAGCAATAAAGCCCTGTATT+TGG - chr2_4:5198185-5198204 None:intergenic 40.0%
TTTATTGCTCTGCAGCATCA+GGG + chr2_4:5198195-5198214 Msa0310410:CDS 40.0%
GCACAAGCACAATCATACAT+CGG - chr2_4:5198456-5198475 None:intergenic 40.0%
CTTCTTCTCCCTCTAACTAT+TGG - chr2_4:5198499-5198518 None:intergenic 40.0%
AGACTATGTCTCGTTCTCAA+TGG - chr2_4:5198545-5198564 None:intergenic 40.0%
ATTTAGCCAACCCTACCTAA+TGG + chr2_4:5198587-5198606 Msa0310410:intron 40.0%
! GGGACATTTTTCCATTAGGT+AGG - chr2_4:5198601-5198620 None:intergenic 40.0%
GCAACAAGCATACAACTAGT+GGG - chr2_4:5198621-5198640 None:intergenic 40.0%
AGCAACAAGCATACAACTAG+TGG - chr2_4:5198622-5198641 None:intergenic 40.0%
GAGAATCCTACCTAGAAAAG+AGG + chr2_4:5198675-5198694 Msa0310410:intron 40.0%
! TAAACCGCTACCTCTTTTCT+AGG - chr2_4:5198688-5198707 None:intergenic 40.0%
GCGATTGAATGAGATGACAT+TGG - chr2_4:5198935-5198954 None:intergenic 40.0%
ACATGCCCATCAACTCAAAT+TGG - chr2_4:5199126-5199145 None:intergenic 40.0%
TCACAATCATTGTCTTCCAG+TGG + chr2_4:5199178-5199197 Msa0310410:three_prime_UTR 40.0%
! TGTTTCTGTACATATGCCAC+TGG - chr2_4:5199197-5199216 None:intergenic 40.0%
CCCACACTTTCTACTTGTTT+AGG + chr2_4:5199242-5199261 Msa0310410:three_prime_UTR 40.0%
ACTTGTTTAGGTGCTAATGC+CGG + chr2_4:5199254-5199273 Msa0310410:three_prime_UTR 40.0%
AAAGGCAGAAGAAAAACTGC+CGG - chr2_4:5199276-5199295 None:intergenic 40.0%
AACATGCTATTGGAACTTGC+AGG - chr2_4:5199318-5199337 None:intergenic 40.0%
TTTCAGCTTCTACACAGACG+AGG - chr2_4:5194280-5194299 None:intergenic 45.0%
TTCCTTCCAGAGAGAAGAAG+CGG - chr2_4:5194311-5194330 None:intergenic 45.0%
TGGAAGGAAGCTTCAATGTC+AGG + chr2_4:5194322-5194341 Msa0310410:exon 45.0%
GAAGCTTCAATGTCAGGTGA+AGG + chr2_4:5194328-5194347 Msa0310410:exon 45.0%
CGTCATCGTCTAAAGGAAGA+GGG - chr2_4:5194378-5194397 None:intergenic 45.0%
TCGTCATCGTCTAAAGGAAG+AGG - chr2_4:5194379-5194398 None:intergenic 45.0%
GTGGAATCGTCATCGTCTAA+AGG - chr2_4:5194385-5194404 None:intergenic 45.0%
AAAGAGGGTTAGGTTTCCGA+AGG + chr2_4:5194539-5194558 Msa0310410:CDS 45.0%
AAGAGGGTTAGGTTTCCGAA+GGG + chr2_4:5194540-5194559 Msa0310410:CDS 45.0%
GGAGAAAGTAATTGCTGAGG+AGG + chr2_4:5194593-5194612 Msa0310410:CDS 45.0%
!! CGAAAATGGAGGTATCTCCA+AGG + chr2_4:5194701-5194720 Msa0310410:CDS 45.0%
TATCAACAAGATCGGCCACA+TGG - chr2_4:5195376-5195395 None:intergenic 45.0%
CTCATAAGTCCTAGCTCAAC+TGG + chr2_4:5195410-5195429 Msa0310410:intron 45.0%
AACTCACACACACAAAGTGG+AGG - chr2_4:5195491-5195510 None:intergenic 45.0%
AAGGATTCTTGCAGGATGCA+TGG + chr2_4:5196054-5196073 Msa0310410:intron 45.0%
! GAGGTTGATCCTAGATATGC+TGG + chr2_4:5196089-5196108 Msa0310410:CDS 45.0%
GGCAACAAATGATGAAGAGG+AGG + chr2_4:5196124-5196143 Msa0310410:CDS 45.0%
! GTTTTTCTCTCCCTCATGGT+TGG + chr2_4:5196548-5196567 Msa0310410:intron 45.0%
! GTTTTTCTCTGCCAACCATG+AGG - chr2_4:5196562-5196581 None:intergenic 45.0%
ATGGTTGGCAGAGAAAAACC+AGG + chr2_4:5196563-5196582 Msa0310410:intron 45.0%
! ATTGGGGATTACCGATTACC+TGG - chr2_4:5196584-5196603 None:intergenic 45.0%
AGGTCTTACAAGGCTTGAGA+AGG + chr2_4:5196847-5196866 Msa0310410:intron 45.0%
TCATAGCATCCTCAGTTAGC+TGG - chr2_4:5196932-5196951 None:intergenic 45.0%
GCAGGACAACACAAAGACAA+AGG - chr2_4:5197055-5197074 None:intergenic 45.0%
! AATCTAGAAGCACAGCAAGC+AGG - chr2_4:5197073-5197092 None:intergenic 45.0%
! GCAAGAGAAGAAGGCATATC+TGG + chr2_4:5197682-5197701 Msa0310410:CDS 45.0%
! AGAAGGCATATCTGGGAACA+CGG + chr2_4:5197690-5197709 Msa0310410:CDS 45.0%
CTTTATTGCTCTGCAGCATC+AGG + chr2_4:5198194-5198213 Msa0310410:CDS 45.0%
! GGTTGGCTAAATGTGTCAAC+AGG - chr2_4:5198579-5198598 None:intergenic 45.0%
CCTACCTAGAAAAGAGGTAG+CGG + chr2_4:5198681-5198700 Msa0310410:intron 45.0%
GTGATTCTTACAGGGCTTGA+GGG - chr2_4:5198828-5198847 None:intergenic 45.0%
TGTGATTCTTACAGGGCTTG+AGG - chr2_4:5198829-5198848 None:intergenic 45.0%
AGCCCTGTAAGAATCACATG+AGG + chr2_4:5198831-5198850 Msa0310410:intron 45.0%
GCCCTGTAAGAATCACATGA+GGG + chr2_4:5198832-5198851 Msa0310410:intron 45.0%
CCCCTCATGTGATTCTTACA+GGG - chr2_4:5198836-5198855 None:intergenic 45.0%
CCCTGTAAGAATCACATGAG+GGG + chr2_4:5198833-5198852 Msa0310410:intron 45.0%
GAGTTCTCAAGTTTGAACCC+AGG - chr2_4:5198894-5198913 None:intergenic 45.0%
GGGTTCAAACTTGAGAACTC+TGG + chr2_4:5198894-5198913 Msa0310410:intron 45.0%
!! ATATTATATAAAATTAACAA+TGG - chr2_4:5196695-5196714 None:intergenic 5.0%
!!! ATAATAAGAAAATTATTTTT+TGG + chr2_4:5197439-5197458 Msa0310410:intron 5.0%
GTTGAACCGCTTCTTCTCTC+TGG + chr2_4:5194302-5194321 Msa0310410:five_prime_UTR 50.0%
AACCGCTTCTTCTCTCTGGA+AGG + chr2_4:5194306-5194325 Msa0310410:five_prime_UTR 50.0%
AGAGGGTTAGGTTTCCGAAG+GGG + chr2_4:5194541-5194560 Msa0310410:CDS 50.0%
AGGTTTCCGAAGGGGAAGAA+AGG + chr2_4:5194549-5194568 Msa0310410:CDS 50.0%
GGTTTCCGAAGGGGAAGAAA+GGG + chr2_4:5194550-5194569 Msa0310410:CDS 50.0%
GGTTTCCCTTTCTTCCCCTT+CGG - chr2_4:5194558-5194577 None:intergenic 50.0%
GACGTCCGGCCTAACAATTT+CGG - chr2_4:5195444-5195463 None:intergenic 50.0%
!! ACACACAAAGTGGAGGTACC+GGG - chr2_4:5195484-5195503 None:intergenic 50.0%
! CACACACAAAGTGGAGGTAC+CGG - chr2_4:5195485-5195504 None:intergenic 50.0%
!! GAGGTTTTTGAGCGTGAAGC+AGG + chr2_4:5197176-5197195 Msa0310410:CDS 50.0%
! AACTTAGGGGAAGTTGGTCC+TGG + chr2_4:5197481-5197500 Msa0310410:intron 50.0%
! ACTTAGGGGAAGTTGGTCCT+GGG + chr2_4:5197482-5197501 Msa0310410:intron 50.0%
TTGGTCAGGGCAAGAGAAGA+AGG + chr2_4:5197673-5197692 Msa0310410:CDS 50.0%
! CCGCTACCTCTTTTCTAGGT+AGG - chr2_4:5198684-5198703 None:intergenic 50.0%
GCCCCTCATGTGATTCTTAC+AGG - chr2_4:5198837-5198856 None:intergenic 50.0%
!! TGAGTTGATGGGCATGTCTC+AGG + chr2_4:5199129-5199148 Msa0310410:exon 50.0%
!! GAGTTGATGGGCATGTCTCA+GGG + chr2_4:5199130-5199149 Msa0310410:exon 50.0%
!! AGTTGATGGGCATGTCTCAG+GGG + chr2_4:5199131-5199150 Msa0310410:exon 50.0%
AACTTGTGATCGTGCTGAGC+AGG + chr2_4:5199360-5199379 Msa0310410:three_prime_UTR 50.0%
TTAGGCCGGACGTCATGACT+GGG + chr2_4:5195450-5195469 Msa0310410:intron 55.0%
!! CACACAAAGTGGAGGTACCG+GGG - chr2_4:5195483-5195502 None:intergenic 55.0%
GGCAGCTTGTCCGTCATCAT+CGG - chr2_4:5197734-5197753 None:intergenic 55.0%
TCACTTTGCAAAGCTCCGCC+TGG - chr2_4:5197924-5197943 None:intergenic 55.0%
GCTCTGCAGCATCAGGGAAA+TGG + chr2_4:5198201-5198220 Msa0310410:CDS 55.0%
TCGTGCTGAGCAGGCTGTTA+TGG + chr2_4:5199369-5199388 Msa0310410:three_prime_UTR 55.0%
GAAGGTTCATCTCGCAGCCG+CGG + chr2_4:5194346-5194365 Msa0310410:CDS 60.0%
!! AAGGAAGAGGGCGTTTGCCG+CGG - chr2_4:5194366-5194385 None:intergenic 60.0%
CGCTCTTTCGCAGCAACAGC+CGG - chr2_4:5194639-5194658 None:intergenic 60.0%
CGGCTGTTGCTGCGAAAGAG+CGG + chr2_4:5194637-5194656 Msa0310410:CDS 60.0%
GGCTGTTGCTGCGAAAGAGC+GGG + chr2_4:5194638-5194657 Msa0310410:CDS 60.0%
CTGCGAAAGAGCGGGTGAAG+CGG + chr2_4:5194646-5194665 Msa0310410:CDS 60.0%
GTTAGGCCGGACGTCATGAC+TGG + chr2_4:5195449-5195468 Msa0310410:intron 60.0%
TAGGCCGGACGTCATGACTG+GGG + chr2_4:5195451-5195470 Msa0310410:intron 60.0%
CGAACCCCAGTCATGACGTC+CGG - chr2_4:5195458-5195477 None:intergenic 60.0%
CATGACTGGGGTTCGAACCC+CGG + chr2_4:5195463-5195482 Msa0310410:intron 60.0%
CGAAAGAGCGGGTGAAGCGG+AGG + chr2_4:5194649-5194668 Msa0310410:CDS 65.0%
Chromosome Type Strat End Strand Name
chr2_4 gene 5194236 5199635 5194236 ID=Msa0310410;Name=Msa0310410
chr2_4 mRNA 5194236 5199635 5194236 ID=Msa0310410-mRNA-1;Parent=Msa0310410;Name=Msa0310410-mRNA-1;_AED=0.09;_eAED=0.09;_QI=101|0.88|0.9|1|1|1|10|499|372
chr2_4 exon 5194236 5194416 5194236 ID=Msa0310410-mRNA-1:exon:1829;Parent=Msa0310410-mRNA-1
chr2_4 exon 5194536 5194743 5194536 ID=Msa0310410-mRNA-1:exon:1830;Parent=Msa0310410-mRNA-1
chr2_4 exon 5195852 5195977 5195852 ID=Msa0310410-mRNA-1:exon:1831;Parent=Msa0310410-mRNA-1
chr2_4 exon 5196068 5196199 5196068 ID=Msa0310410-mRNA-1:exon:1832;Parent=Msa0310410-mRNA-1
chr2_4 exon 5196849 5196975 5196849 ID=Msa0310410-mRNA-1:exon:1833;Parent=Msa0310410-mRNA-1
chr2_4 exon 5197156 5197197 5197156 ID=Msa0310410-mRNA-1:exon:1834;Parent=Msa0310410-mRNA-1
chr2_4 exon 5197611 5197826 5197611 ID=Msa0310410-mRNA-1:exon:1835;Parent=Msa0310410-mRNA-1
chr2_4 exon 5197925 5197967 5197925 ID=Msa0310410-mRNA-1:exon:1836;Parent=Msa0310410-mRNA-1
chr2_4 exon 5198145 5198222 5198145 ID=Msa0310410-mRNA-1:exon:1837;Parent=Msa0310410-mRNA-1
chr2_4 exon 5199070 5199635 5199070 ID=Msa0310410-mRNA-1:exon:1838;Parent=Msa0310410-mRNA-1
chr2_4 five_prime_UTR 5194236 5194336 5194236 ID=Msa0310410-mRNA-1:five_prime_utr;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5194337 5194416 5194337 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5194536 5194743 5194536 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5195852 5195977 5195852 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5196068 5196199 5196068 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5196849 5196975 5196849 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5197156 5197197 5197156 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5197611 5197826 5197611 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5197925 5197967 5197925 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5198145 5198222 5198145 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 CDS 5199070 5199136 5199070 ID=Msa0310410-mRNA-1:cds;Parent=Msa0310410-mRNA-1
chr2_4 three_prime_UTR 5199137 5199635 5199137 ID=Msa0310410-mRNA-1:three_prime_utr;Parent=Msa0310410-mRNA-1
Gene Sequence

>Msa0310410

ATGTCAGGTGAAGGTTCATCTCGCAGCCGCGGCAAACGCCCTCTTCCTTTAGACGATGACGATTCCACCAAAAATCCACCAGCAAAGAGGGTTAGGTTTCCGAAGGGGAAGAAAGGGAAACCAGTTGAAGTAATAGTGGAGAAAGTAATTGCTGAGGAGGATGTCAATGATTTGTCGAATCCGGCTGTTGCTGCGAAAGAGCGGGTGAAGCGGAGGAATCAAATTACTGCTGAGCTTATCAGTGACGAAAATGGAGGTATCTCCAAGGTTGCTGAAGTTACATATAAGGAAAATGAGAATTTTGTTGAGGACGGAATTCAGATTGAGCCTTTCAACCTAGATAAAGAAAGGGAAGAAGGTTATTTTGATGCATCCGGAAACTTTGTTGAATATGTAAGAGATAATGAGATTAAGGATGCATGGCTTGATAATGTTGAGGTTGATCCTAGATATGCTGGATTAAGCTCTGTGGCAACAAATGATGAAGAGGAGGTCCAAGAGCTTTCTTCTAAAGATGTGGCAATCATGAAGAGGCGCATTGCAAATGTCTTACAAGGCTTGAGAAGGTTAAAAGGCAGCGGTGATAGAAAGACAAAAATGTCTGGTGAGACTAAGATTGTATTTGACCAGCTAACTGAGGATGCTATGAAGCTTATGGAGAATGGTGAATTCAATGTTTATCATGAACATAAAGAGGTTTTTGAGCGTGAAGCAGGAGCACCAATTACTAATGCCTATGCGTTTTACAATCTCTCTCTTTCAGATGGATATGAGAAATTGGTCAGGGCAAGAGAAGAAGGCATATCTGGGAACACGGATGATTTTGATATGTTTGCCGATGATGACGGACAAGCTGCCACTAAGCCATCTACAGATGAAAATAATGCAGTTAGTGAACCATCATCAGATGCCATTAATTCTTCTACAGAGGGCGGAGCTTTGCAAAGTGATTATGTGTATGATGAATCTTCTGGGTATTATTACAGCAGCAGTTTGGGCTATTATTATGATCCAAATACAGGGCTTTATTGCTCTGCAGCATCAGGGAAATGGTACTCATTTAATGAAGAGACTAGCACCTATGATGAAGTTAATGAGGTTGCATCCAATTTGAGTTGA

Protein sequence

>Msa0310410

MSGEGSSRSRGKRPLPLDDDDSTKNPPAKRVRFPKGKKGKPVEVIVEKVIAEEDVNDLSNPAVAAKERVKRRNQITAELISDENGGISKVAEVTYKENENFVEDGIQIEPFNLDKEREEGYFDASGNFVEYVRDNEIKDAWLDNVEVDPRYAGLSSVATNDEEEVQELSSKDVAIMKRRIANVLQGLRRLKGSGDRKTKMSGETKIVFDQLTEDAMKLMENGEFNVYHEHKEVFEREAGAPITNAYAFYNLSLSDGYEKLVRAREEGISGNTDDFDMFADDDGQAATKPSTDENNAVSEPSSDAINSSTEGGALQSDYVYDESSGYYYSSSLGYYYDPNTGLYCSAASGKWYSFNEETSTYDEVNEVASNLS*