AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0239450


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239450 MtrunA17_Chr2g0290601 94.428 341 19 0 1 341 1 341 0.0 575
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0239450 AT5G47680.1 66.460 322 105 2 12 330 16 337 2.36e-133 384

Find 114 sgRNAs with CRISPR-Local

Find 240 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GAACGTTGTTCTTTGGATTT+TGG 0.161949 2_2:-13908933 Msa0239450:three_prime_UTR
AATCTATTTAGGATGAATTT+TGG 0.171342 2_2:-13908563 Msa0239450:three_prime_UTR
GGTTGTGATGGTTCTGGGTT+TGG 0.219937 2_2:+13912084 None:intergenic
CTTGTTAAAGCTAAAGAATT+AGG 0.221277 2_2:-13911808 Msa0239450:CDS
TAGCTTCTTCTTCGCGTTCT+TGG 0.225791 2_2:+13912047 None:intergenic
CCTCTTGGAACGTTGTTCTT+TGG 0.251149 2_2:-13908940 Msa0239450:three_prime_UTR
AGATACCGGGATTTGATAAA+TGG 0.257547 2_2:-13910420 Msa0239450:CDS
TTGAACAAGATATATATAAT+TGG 0.269988 2_2:-13910292 Msa0239450:CDS
CCTGCACATCTTTGGCTAAC+TGG 0.275764 2_2:-13910475 Msa0239450:CDS
GAAGTGGGTTGTGATGGTTC+TGG 0.288321 2_2:+13912078 None:intergenic
TGGAGGTGGAACTGTGGATT+CGG 0.300517 2_2:+13912104 None:intergenic
CAAACTGAACCTAAATAAAA+AGG 0.302071 2_2:+13908531 None:intergenic
TATTCTGTAGGAATCTATTT+AGG 0.309485 2_2:-13908574 Msa0239450:three_prime_UTR
TTGAAGCGAGAATGAGTTTA+CGG 0.339611 2_2:-13911882 Msa0239450:CDS
CAAACAGCTAAACTTCCTAT+TGG 0.340136 2_2:-13910205 Msa0239450:CDS
AAGTGGGTTGTGATGGTTCT+GGG 0.356287 2_2:+13912079 None:intergenic
TCATCAACAAGTTTGTTAGA+AGG 0.359781 2_2:+13909138 None:intergenic
GTGAAACCCCTGCACATCTT+TGG 0.363917 2_2:-13910483 Msa0239450:CDS
GTGGATTAGTTGATAGGAAT+AGG 0.366874 2_2:-13910270 Msa0239450:CDS
GGCAGATCGTAAGGATGATT+TGG 0.373805 2_2:-13910359 Msa0239450:CDS
CTTGAAGATGTCTAGTTCTC+AGG 0.377122 2_2:-13910176 Msa0239450:intron
TGTGGCTTTGCCACAACAAT+AGG 0.377875 2_2:+13908793 None:intergenic
GTGGATTCGGGTTCGTGGGC+TGG 0.377972 2_2:+13912117 None:intergenic
TAATTGGTGGATTAGTTGAT+AGG 0.387931 2_2:-13910276 Msa0239450:CDS
CACAAGTTTCAAATCATTGA+TGG 0.392956 2_2:-13909080 Msa0239450:three_prime_UTR
TTGTTAAAGCTAAAGAATTA+GGG 0.401122 2_2:-13911807 Msa0239450:CDS
CAAAACAACGACAATAGAAA+TGG 0.408049 2_2:-13912142 Msa0239450:exon
GGAGGTGGAACTGTGGATTC+GGG 0.416358 2_2:+13912105 None:intergenic
GATGGTTCTGGGTTTGGAGG+TGG 0.417041 2_2:+13912090 None:intergenic
AGAAGGAAACCGAACGGAAA+AGG 0.417690 2_2:-13911960 Msa0239450:CDS
AATTCGTAGTCTCGTTCAAC+AGG 0.419056 2_2:-13911734 Msa0239450:intron
AAGAGGGTAATTCCATCATA+AGG 0.436588 2_2:+13908957 None:intergenic
AGAAATACTACTCAAGTTCC+TGG 0.437281 2_2:-13909340 Msa0239450:CDS
AGAGAAGAAAGCGGCGGCGA+AGG 0.440968 2_2:-13911992 Msa0239450:CDS
GTCACACCTCGCAGAAAATC+CGG 0.448803 2_2:+13908983 None:intergenic
GAACTGTGGATTCGGGTTCG+TGG 0.452481 2_2:+13912112 None:intergenic
ATGCATACTTGTAGTTAAGT+TGG 0.455539 2_2:-13908769 Msa0239450:three_prime_UTR
AACTGTGGATTCGGGTTCGT+GGG 0.456447 2_2:+13912113 None:intergenic
TTACAAGAACCGAACATAGT+AGG 0.458262 2_2:+13908701 None:intergenic
TGTAAAACATATTCTTTGAG+AGG 0.461127 2_2:-13908683 Msa0239450:three_prime_UTR
CATCAACAAGTTTGTTAGAA+GGG 0.461175 2_2:+13909139 None:intergenic
TGAAGTGTAGAGCGTAGAAC+TGG 0.461467 2_2:-13909118 Msa0239450:exon
AACAAGATATATATAATTGG+TGG 0.462299 2_2:-13910289 Msa0239450:CDS
AGCTAGACAAACAACAAAGA+TGG 0.462734 2_2:-13912029 Msa0239450:CDS
CCAGTTAGCCAAAGATGTGC+AGG 0.463576 2_2:+13910475 None:intergenic
GGAAAGAGAGAATGGAGAAA+AGG 0.469323 2_2:-13911861 Msa0239450:CDS
TAAGTCTTATATCGAAGTAT+TGG 0.470291 2_2:-13910380 Msa0239450:CDS
TGTGATGGTTCTGGGTTTGG+AGG 0.475378 2_2:+13912087 None:intergenic
TCGACGATTCCTACTATGTT+CGG 0.475571 2_2:-13908710 Msa0239450:three_prime_UTR
GAGTTTACGGAAAGAGAGAA+TGG 0.480649 2_2:-13911869 Msa0239450:CDS
CCGAACGGAAAAGGAAGGAA+TGG 0.480768 2_2:-13911951 Msa0239450:CDS
AGTTGATAGGAATAGGTTCA+AGG 0.488910 2_2:-13910263 Msa0239450:CDS
CGAAGTATTGGCAGATCGTA+AGG 0.491306 2_2:-13910368 Msa0239450:CDS
TTATGATGGAATTACCCTCT+TGG 0.498320 2_2:-13908955 Msa0239450:three_prime_UTR
AACTGGCTGCGAAGGAGAGA+TGG 0.499121 2_2:-13910458 Msa0239450:CDS
AGAAAGTATAGCGGGGATAA+CGG 0.504106 2_2:-13911926 Msa0239450:CDS
TAGGTTCAAGGGGATAACTA+TGG 0.506219 2_2:-13910251 Msa0239450:CDS
AGTTCTGAAGTGGGTTGTGA+TGG 0.510560 2_2:+13912072 None:intergenic
TGTATATATATTGTTTGAGT+CGG 0.511992 2_2:+13908606 None:intergenic
GTAAAACATATTCTTTGAGA+GGG 0.520534 2_2:-13908682 Msa0239450:three_prime_UTR
ATGTATTGCTATGCGGTGAA+TGG 0.524164 2_2:-13910511 Msa0239450:CDS
GAATGGGAAGAAAGTATAGC+GGG 0.525752 2_2:-13911934 Msa0239450:CDS
TTCTTGGAGAGTTCTGAAGT+GGG 0.527632 2_2:+13912063 None:intergenic
AGTTCCTGGAGACAAGGGAT+TGG 0.534892 2_2:-13909326 Msa0239450:CDS
CGAACGGAAAAGGAAGGAAT+GGG 0.535470 2_2:-13911950 Msa0239450:CDS
AGAGGGTAATTCCATCATAA+GGG 0.537730 2_2:+13908958 None:intergenic
ATCTTCAAGAAATTGCCAAT+AGG 0.540462 2_2:+13910190 None:intergenic
TACTCAAGTTCCTGGAGACA+AGG 0.542557 2_2:-13909332 Msa0239450:CDS
GTTCTTGGAGAGTTCTGAAG+TGG 0.543048 2_2:+13912062 None:intergenic
ACAAGTTTCAAATCATTGAT+GGG 0.545384 2_2:-13909079 Msa0239450:three_prime_UTR
CTTTGGCTAACTGGCTGCGA+AGG 0.546041 2_2:-13910466 Msa0239450:CDS
GCTAGACAAACAACAAAGAT+GGG 0.546938 2_2:-13912028 Msa0239450:CDS
GAACAATGGTCCTCTCTACA+AGG 0.548940 2_2:+13908731 None:intergenic
TGTTTGCTTGCGCACACCAA+GGG 0.549981 2_2:+13908866 None:intergenic
AAACAATATATATACACTTG+TGG 0.550055 2_2:-13908599 Msa0239450:three_prime_UTR
TGATATAAGTATGATGATGT+TGG 0.550738 2_2:+13908414 None:intergenic
GTTGATAGGAATAGGTTCAA+GGG 0.551035 2_2:-13910262 Msa0239450:CDS
AGGTGTGACCTCCCTTATGA+TGG 0.555087 2_2:-13908969 Msa0239450:three_prime_UTR
TGGGTTTGGAGGTGGAACTG+TGG 0.555515 2_2:+13912098 None:intergenic
AGATCACAAGCTGATTCAGA+AGG 0.558701 2_2:-13909267 Msa0239450:CDS
AACGGAGGAAGAGAGAGTGA+AGG 0.562848 2_2:-13911908 Msa0239450:CDS
ACAGTTATGTTATTTGACAA+TGG 0.565339 2_2:-13908903 Msa0239450:three_prime_UTR
ATGATCCATTTATCAAATCC+CGG 0.565613 2_2:+13910415 None:intergenic
TGCAAGATGTCAAATATCAT+AGG 0.566365 2_2:+13908838 None:intergenic
GGCGAAGGAGAAGAAGAAGA+AGG 0.568318 2_2:-13911977 Msa0239450:CDS
GTATCTAACGGCTGATTCAG+AGG 0.575403 2_2:-13910335 Msa0239450:CDS
GGATGATTTGGTGTATCTAA+CGG 0.578478 2_2:-13910347 Msa0239450:CDS
CCAAAGAACAACGTTCCAAG+AGG 0.578724 2_2:+13908940 None:intergenic
TTGATAGGAATAGGTTCAAG+GGG 0.582030 2_2:-13910261 Msa0239450:CDS
TGCAGATAATACTGTAGATG+AGG 0.589269 2_2:-13909241 Msa0239450:CDS
CACTATTGAGCCTTGTAGAG+AGG 0.590068 2_2:-13908741 Msa0239450:three_prime_UTR
GGAAACCGAACGGAAAAGGA+AGG 0.590394 2_2:-13911956 Msa0239450:CDS
ACACTTGTGGAATATTCTGT+AGG 0.601308 2_2:-13908586 Msa0239450:three_prime_UTR
AGAAGAAGAAGGAAACCGAA+CGG 0.602752 2_2:-13911966 Msa0239450:CDS
TGATAAATGGATCATCGAGA+AGG 0.606007 2_2:-13910407 Msa0239450:CDS
TTACATATGTTAATGTATGT+CGG 0.607308 2_2:-13908459 Msa0239450:three_prime_UTR
ACGAGACTACGAATTTCTTG+AGG 0.608427 2_2:+13911742 None:intergenic
CAGTTAGCCAAAGATGTGCA+GGG 0.609008 2_2:+13910476 None:intergenic
TCAGTATGTGCCTATTGTTG+TGG 0.611350 2_2:-13908803 Msa0239450:three_prime_UTR
TAACTACAAGTATGCATGTG+TGG 0.620464 2_2:+13908775 None:intergenic
ATGGAGAAAGCACAAGAGCA+AGG 0.622205 2_2:-13910232 Msa0239450:CDS
TCTTTGCTGTTATCCCTCAG+AGG 0.622550 2_2:-13909293 Msa0239450:CDS
ACTCAAGTTCCTGGAGACAA+GGG 0.624343 2_2:-13909331 Msa0239450:CDS
AAAGAAAGCAGAGAAGAAAG+CGG 0.626250 2_2:-13912001 Msa0239450:CDS
ATGTTTGCTTGCGCACACCA+AGG 0.627820 2_2:+13908865 None:intergenic
GAAAGCAGAGAAGAAAGCGG+CGG 0.640363 2_2:-13911998 Msa0239450:CDS
TAGTAGGAATCGTCGAACAA+TGG 0.644966 2_2:+13908717 None:intergenic
CAAAGAACAACGTTCCAAGA+GGG 0.647171 2_2:+13908941 None:intergenic
AGTTAGCCAAAGATGTGCAG+GGG 0.659607 2_2:+13910477 None:intergenic
GGGTAATTCCATCATAAGGG+AGG 0.673707 2_2:+13908961 None:intergenic
GGAATGGGAAGAAAGTATAG+CGG 0.683390 2_2:-13911935 Msa0239450:CDS
AAGTATAGCGGGGATAACGG+AGG 0.708957 2_2:-13911923 Msa0239450:CDS
AATGGGAAGAAAGTATAGCG+GGG 0.715050 2_2:-13911933 Msa0239450:CDS
GTAGATAATGTATTGCTATG+CGG 0.772427 2_2:-13910518 Msa0239450:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATTAACAAATTTTTTTGAT+GGG - chr2_2:13908816-13908835 Msa0239450:three_prime_UTR 10.0%
!!! TAAATTATTTTGATTTGAAA+TGG - chr2_2:13908858-13908877 Msa0239450:three_prime_UTR 10.0%
!! AAAAATGAAATTCAAAATTA+GGG + chr2_2:13909420-13909439 None:intergenic 10.0%
!! AAAAAATGAAATTCAAAATT+AGG + chr2_2:13909421-13909440 None:intergenic 10.0%
!!! CATATATTTTTGTTATAAAT+TGG - chr2_2:13909710-13909729 Msa0239450:intron 10.0%
!!! GAATTAACAAATTTTTTTGA+TGG - chr2_2:13908815-13908834 Msa0239450:three_prime_UTR 15.0%
!! AGTGATTATATTTATATGAA+AGG - chr2_2:13908908-13908927 Msa0239450:three_prime_UTR 15.0%
!! ATTATATTTATATGAAAGGT+CGG - chr2_2:13908912-13908931 Msa0239450:three_prime_UTR 15.0%
!!! CTTATTTTCATTAGTTTATA+TGG - chr2_2:13909044-13909063 Msa0239450:three_prime_UTR 15.0%
!!! TATTTTTGTTATAAATTGGT+AGG - chr2_2:13909714-13909733 Msa0239450:intron 15.0%
!!! ATTTTTGTTATAAATTGGTA+GGG - chr2_2:13909715-13909734 Msa0239450:intron 15.0%
!! TTGAACAAGATATATATAAT+TGG - chr2_2:13910233-13910252 Msa0239450:CDS 15.0%
!! TGATCTATGAAATTATAATT+TGG - chr2_2:13910784-13910803 Msa0239450:intron 15.0%
!! TTGTTAAAGCTAAAGAATTA+GGG - chr2_2:13908718-13908737 Msa0239450:three_prime_UTR 20.0%
!!! AAAATTTCTATAGTGGATTA+CGG + chr2_2:13909486-13909505 None:intergenic 20.0%
!!! CTATATTTTTGAATGTGTAT+TGG - chr2_2:13909840-13909859 Msa0239450:intron 20.0%
!!! TAATATTTCTTGTTGTGTAT+TGG - chr2_2:13909957-13909976 Msa0239450:intron 20.0%
!! TAATCAATTGAAAAAGATAC+CGG - chr2_2:13910091-13910110 Msa0239450:intron 20.0%
!! AACAAGATATATATAATTGG+TGG - chr2_2:13910236-13910255 Msa0239450:CDS 20.0%
!!! AAGTTTGTATTTTGTATCAT+TGG - chr2_2:13910446-13910465 Msa0239450:CDS 20.0%
!! GTACTATGTATAGATTATAT+TGG - chr2_2:13910480-13910499 Msa0239450:CDS 20.0%
!!! TACTTGATAACACTTAAAAA+TGG - chr2_2:13911088-13911107 Msa0239450:intron 20.0%
!!! ACTTGATAACACTTAAAAAT+GGG - chr2_2:13911089-13911108 Msa0239450:intron 20.0%
!! TGTATATATATTGTTTGAGT+CGG + chr2_2:13911922-13911941 None:intergenic 20.0%
!! AAACAATATATATACACTTG+TGG - chr2_2:13911926-13911945 Msa0239450:CDS 20.0%
!!! AATCTATTTAGGATGAATTT+TGG - chr2_2:13911962-13911981 Msa0239450:CDS 20.0%
!!! ATCTATTTAGGATGAATTTT+GGG - chr2_2:13911963-13911982 Msa0239450:CDS 20.0%
!! AACCTAAATAAAAAGGTTAA+TGG + chr2_2:13911990-13912009 None:intergenic 20.0%
!!! TTGAACTATTTTTGAGTTAA+GGG + chr2_2:13912022-13912041 None:intergenic 20.0%
!!! ATTGAACTATTTTTGAGTTA+AGG + chr2_2:13912023-13912042 None:intergenic 20.0%
!! TTACATATGTTAATGTATGT+CGG - chr2_2:13912066-13912085 Msa0239450:CDS 20.0%
!!! TGCTTAAACTCTAAATTTTT+GGG + chr2_2:13912185-13912204 None:intergenic 20.0%
!!! TTGCTTAAACTCTAAATTTT+TGG + chr2_2:13912186-13912205 None:intergenic 20.0%
! CTTGTTAAAGCTAAAGAATT+AGG - chr2_2:13908717-13908736 Msa0239450:three_prime_UTR 25.0%
!!! TGGGTTTTTTAGATTGTTTA+CGG - chr2_2:13908835-13908854 Msa0239450:three_prime_UTR 25.0%
!!! AAATTTCTATAGTGGATTAC+GGG + chr2_2:13909485-13909504 None:intergenic 25.0%
! GAACTCAAAAATTTCTATAG+TGG + chr2_2:13909493-13909512 None:intergenic 25.0%
!! TTTTACAATCTCAACCAATT+TGG - chr2_2:13909679-13909698 Msa0239450:intron 25.0%
! TATATGAGAAACATCCAAAT+TGG + chr2_2:13909696-13909715 None:intergenic 25.0%
!! TGTATTGGTAAATGATAGAA+TGG - chr2_2:13909855-13909874 Msa0239450:intron 25.0%
! CGATATATGTTTAGATAAGA+CGG - chr2_2:13909880-13909899 Msa0239450:intron 25.0%
! AATCAATTGAAAAAGATACC+GGG - chr2_2:13910092-13910111 Msa0239450:intron 25.0%
!! TAAGTCTTATATCGAAGTAT+TGG - chr2_2:13910145-13910164 Msa0239450:intron 25.0%
!!! TCTATCACATTAGTCTTTTT+TGG - chr2_2:13910807-13910826 Msa0239450:intron 25.0%
!! ATTGCTGATCTTCAATTTTA+TGG - chr2_2:13911006-13911025 Msa0239450:intron 25.0%
! AAGTAAAAAGAAATGTGTTG+AGG - chr2_2:13911359-13911378 Msa0239450:intron 25.0%
! ACAAGTTTCAAATCATTGAT+GGG - chr2_2:13911446-13911465 Msa0239450:intron 25.0%
!! ACAGTTATGTTATTTGACAA+TGG - chr2_2:13911622-13911641 Msa0239450:intron 25.0%
! TGTAAAACATATTCTTTGAG+AGG - chr2_2:13911842-13911861 Msa0239450:CDS 25.0%
!! GTAAAACATATTCTTTGAGA+GGG - chr2_2:13911843-13911862 Msa0239450:CDS 25.0%
! TATTCTGTAGGAATCTATTT+AGG - chr2_2:13911951-13911970 Msa0239450:CDS 25.0%
!!! GTCCATTAACCTTTTTATTT+AGG - chr2_2:13911985-13912004 Msa0239450:CDS 25.0%
! CAAACTGAACCTAAATAAAA+AGG + chr2_2:13911997-13912016 None:intergenic 25.0%
!! TGATATAAGTATGATGATGT+TGG + chr2_2:13912114-13912133 None:intergenic 25.0%
!!! GGAGGAAAAAAAATTGATTT+TGG + chr2_2:13912164-13912183 None:intergenic 25.0%
!!! TTAAACTCTAAATTTTTGGG+AGG + chr2_2:13912182-13912201 None:intergenic 25.0%
CAAAACAACGACAATAGAAA+TGG - chr2_2:13908383-13908402 Msa0239450:three_prime_UTR 30.0%
AGAAAAATGAGAAGAAAGAG+AGG - chr2_2:13908694-13908713 Msa0239450:three_prime_UTR 30.0%
ATGGAGATTACTTTGCTAAT+AGG - chr2_2:13908877-13908896 Msa0239450:three_prime_UTR 30.0%
ATTTATATGAAAGGTCGGTT+TGG - chr2_2:13908917-13908936 Msa0239450:three_prime_UTR 30.0%
AAACATTTGTGAGACTGTTT+AGG - chr2_2:13908970-13908989 Msa0239450:three_prime_UTR 30.0%
TGTAAATTAAGCTGTGAACA+AGG - chr2_2:13909151-13909170 Msa0239450:CDS 30.0%
TTGTCAATAGCACACTATAA+CGG - chr2_2:13909219-13909238 Msa0239450:CDS 30.0%
! ATGTATTTGATAACAGAGTC+AGG - chr2_2:13909573-13909592 Msa0239450:intron 30.0%
! TGTTGTGTATTGGTAAATGA+TGG - chr2_2:13909967-13909986 Msa0239450:intron 30.0%
! TGTATTGGTAAATGATGGAA+TGG - chr2_2:13909972-13909991 Msa0239450:intron 30.0%
GTAGATAATGTATTGCTATG+CGG - chr2_2:13910007-13910026 Msa0239450:intron 30.0%
ATGATCCATTTATCAAATCC+CGG + chr2_2:13910113-13910132 None:intergenic 30.0%
!! TAATTGGTGGATTAGTTGAT+AGG - chr2_2:13910249-13910268 Msa0239450:CDS 30.0%
ATCTTCAAGAAATTGCCAAT+AGG + chr2_2:13910338-13910357 None:intergenic 30.0%
! TACAAACTTTTAGCAGTCAA+AGG + chr2_2:13910435-13910454 None:intergenic 30.0%
CAAAAGAGAGAGAGAAAAAA+TGG - chr2_2:13910602-13910621 Msa0239450:intron 30.0%
AATGTAAAAGAATCTACCGA+TGG + chr2_2:13910665-13910684 None:intergenic 30.0%
ACCATTTAGCTGAAATTACT+GGG - chr2_2:13910721-13910740 Msa0239450:intron 30.0%
TTCAGTCCTACATCTATAAA+GGG + chr2_2:13910943-13910962 None:intergenic 30.0%
ATTCAGTCCTACATCTATAA+AGG + chr2_2:13910944-13910963 None:intergenic 30.0%
TTATAGATGTAGGACTGAAT+TGG - chr2_2:13910944-13910963 Msa0239450:intron 30.0%
TAAATTTCCCTAGACTAAGT+TGG - chr2_2:13911060-13911079 Msa0239450:intron 30.0%
TAAATCACCAACTTAGTCTA+GGG + chr2_2:13911070-13911089 None:intergenic 30.0%
AAATGTCTTAGACACACAAA+TGG + chr2_2:13911120-13911139 None:intergenic 30.0%
TATTTCTCATTTGAGCTTTC+AGG - chr2_2:13911140-13911159 Msa0239450:intron 30.0%
TGAAGAAAAAGATGATCTAC+TGG - chr2_2:13911335-13911354 Msa0239450:intron 30.0%
!! CATCAACAAGTTTGTTAGAA+GGG + chr2_2:13911389-13911408 None:intergenic 30.0%
!! TCATCAACAAGTTTGTTAGA+AGG + chr2_2:13911390-13911409 None:intergenic 30.0%
CACAAGTTTCAAATCATTGA+TGG - chr2_2:13911445-13911464 Msa0239450:intron 30.0%
TGCAAGATGTCAAATATCAT+AGG + chr2_2:13911690-13911709 None:intergenic 30.0%
ATGCATACTTGTAGTTAAGT+TGG - chr2_2:13911756-13911775 Msa0239450:CDS 30.0%
!! TGTCGTTGTTTTGTTGAGAA+TGG + chr2_2:13908376-13908395 None:intergenic 35.0%
AGCTAGACAAACAACAAAGA+TGG - chr2_2:13908496-13908515 Msa0239450:three_prime_UTR 35.0%
GCTAGACAAACAACAAAGAT+GGG - chr2_2:13908497-13908516 Msa0239450:three_prime_UTR 35.0%
AAAGAAAGCAGAGAAGAAAG+CGG - chr2_2:13908524-13908543 Msa0239450:three_prime_UTR 35.0%
TTGAAGCGAGAATGAGTTTA+CGG - chr2_2:13908643-13908662 Msa0239450:three_prime_UTR 35.0%
AGATACCGGGATTTGATAAA+TGG - chr2_2:13910105-13910124 Msa0239450:intron 35.0%
TGATAAATGGATCATCGAGA+AGG - chr2_2:13910118-13910137 Msa0239450:intron 35.0%
!! GGATGATTTGGTGTATCTAA+CGG - chr2_2:13910178-13910197 Msa0239450:CDS 35.0%
!! GTGGATTAGTTGATAGGAAT+AGG - chr2_2:13910255-13910274 Msa0239450:CDS 35.0%
!! AGTTGATAGGAATAGGTTCA+AGG - chr2_2:13910262-13910281 Msa0239450:CDS 35.0%
! GTTGATAGGAATAGGTTCAA+GGG - chr2_2:13910263-13910282 Msa0239450:CDS 35.0%
TTGATAGGAATAGGTTCAAG+GGG - chr2_2:13910264-13910283 Msa0239450:CDS 35.0%
CAAACAGCTAAACTTCCTAT+TGG - chr2_2:13910320-13910339 Msa0239450:CDS 35.0%
TAACCCTCTTGTATTTGCTT+TGG - chr2_2:13910393-13910412 Msa0239450:CDS 35.0%
AACCCTCTTGTATTTGCTTT+GGG - chr2_2:13910394-13910413 Msa0239450:CDS 35.0%
AGAGACGATTGAGAGAAAAT+AGG - chr2_2:13910560-13910579 Msa0239450:intron 35.0%
GAGACGATTGAGAGAAAATA+GGG - chr2_2:13910561-13910580 Msa0239450:intron 35.0%
AAGAGAGAGAGAAAAAATGG+AGG - chr2_2:13910605-13910624 Msa0239450:intron 35.0%
AGAGAGAGAGAAAAAATGGA+GGG - chr2_2:13910606-13910625 Msa0239450:intron 35.0%
CACCATTTAGCTGAAATTAC+TGG - chr2_2:13910720-13910739 Msa0239450:intron 35.0%
CCATTTAGCTGAAATTACTG+GGG - chr2_2:13910722-13910741 Msa0239450:intron 35.0%
ATGTGTCAAAGTGACTAATG+TGG - chr2_2:13910852-13910871 Msa0239450:intron 35.0%
TTGAAGATCAGCAATCACAT+TGG + chr2_2:13911001-13911020 None:intergenic 35.0%
GTAAATCACCAACTTAGTCT+AGG + chr2_2:13911071-13911090 None:intergenic 35.0%
AGAAATACTACTCAAGTTCC+TGG - chr2_2:13911185-13911204 Msa0239450:intron 35.0%
TGCAGATAATACTGTAGATG+AGG - chr2_2:13911284-13911303 Msa0239450:intron 35.0%
!!! GTTTTTTGACAACTTGTGAC+CGG - chr2_2:13911523-13911542 Msa0239450:intron 35.0%
AGAGGGTAATTCCATCATAA+GGG + chr2_2:13911570-13911589 None:intergenic 35.0%
AAGAGGGTAATTCCATCATA+AGG + chr2_2:13911571-13911590 None:intergenic 35.0%
! TTATGATGGAATTACCCTCT+TGG - chr2_2:13911570-13911589 Msa0239450:intron 35.0%
! GAACGTTGTTCTTTGGATTT+TGG - chr2_2:13911592-13911611 Msa0239450:intron 35.0%
TAACTACAAGTATGCATGTG+TGG + chr2_2:13911753-13911772 None:intergenic 35.0%
TTACAAGAACCGAACATAGT+AGG + chr2_2:13911827-13911846 None:intergenic 35.0%
! TAATTTTCGCTTGAGTGTTC+AGG + chr2_2:13911890-13911909 None:intergenic 35.0%
ACACTTGTGGAATATTCTGT+AGG - chr2_2:13911939-13911958 Msa0239450:CDS 35.0%
!! GTTTTGTTGAGAATGGAGAG+AGG + chr2_2:13908369-13908388 None:intergenic 40.0%
!! TTCTTGGAGAGTTCTGAAGT+GGG + chr2_2:13908465-13908484 None:intergenic 40.0%
AGAAGAAGAAGGAAACCGAA+CGG - chr2_2:13908559-13908578 Msa0239450:three_prime_UTR 40.0%
! GGAATGGGAAGAAAGTATAG+CGG - chr2_2:13908590-13908609 Msa0239450:three_prime_UTR 40.0%
! GAATGGGAAGAAAGTATAGC+GGG - chr2_2:13908591-13908610 Msa0239450:three_prime_UTR 40.0%
! AATGGGAAGAAAGTATAGCG+GGG - chr2_2:13908592-13908611 Msa0239450:three_prime_UTR 40.0%
! AGAAAGTATAGCGGGGATAA+CGG - chr2_2:13908599-13908618 Msa0239450:three_prime_UTR 40.0%
GAGTTTACGGAAAGAGAGAA+TGG - chr2_2:13908656-13908675 Msa0239450:three_prime_UTR 40.0%
GGAAAGAGAGAATGGAGAAA+AGG - chr2_2:13908664-13908683 Msa0239450:three_prime_UTR 40.0%
ACGAGACTACGAATTTCTTG+AGG + chr2_2:13908786-13908805 None:intergenic 40.0%
AATTCGTAGTCTCGTTCAAC+AGG - chr2_2:13908791-13908810 Msa0239450:three_prime_UTR 40.0%
! AAGGCCTAAGTTGAGAATGT+TGG - chr2_2:13909170-13909189 Msa0239450:CDS 40.0%
GCAACCAACATTCTCAACTT+AGG + chr2_2:13909177-13909196 None:intergenic 40.0%
CACTATAAGTGGTTGAAGAG+CGG - chr2_2:13909318-13909337 Msa0239450:CDS 40.0%
TGGCTGCTATTGCAAACTTT+GGG - chr2_2:13909379-13909398 Msa0239450:intron 40.0%
ATGTATTGCTATGCGGTGAA+TGG - chr2_2:13910014-13910033 Msa0239450:intron 40.0%
TAGGTTCAAGGGGATAACTA+TGG - chr2_2:13910274-13910293 Msa0239450:CDS 40.0%
!! CTTGAAGATGTCTAGTTCTC+AGG - chr2_2:13910349-13910368 Msa0239450:CDS 40.0%
AGCCCAAAGCAAATACAAGA+GGG + chr2_2:13910399-13910418 None:intergenic 40.0%
ATTGGATCATCTTCTGCAAG+TGG - chr2_2:13910498-13910517 Msa0239450:CDS 40.0%
GAGAGAGAGAAAAAATGGAG+GGG - chr2_2:13910607-13910626 Msa0239450:intron 40.0%
AGAGAGAGAAAAAATGGAGG+GGG - chr2_2:13910608-13910627 Msa0239450:intron 40.0%
AAAGAATCTACCGATGGATC+CGG + chr2_2:13910659-13910678 None:intergenic 40.0%
CCCCAGTAATTTCAGCTAAA+TGG + chr2_2:13910725-13910744 None:intergenic 40.0%
CTATAAAGGGTCGCTCAATT+TGG + chr2_2:13910930-13910949 None:intergenic 40.0%
! CTTGTGATCTTTTCCTCTGA+GGG + chr2_2:13911248-13911267 None:intergenic 40.0%
! AGATCACAAGCTGATTCAGA+AGG - chr2_2:13911258-13911277 Msa0239450:intron 40.0%
CAAAGAACAACGTTCCAAGA+GGG + chr2_2:13911587-13911606 None:intergenic 40.0%
GGTGAACGAAAAATATCCCT+TGG - chr2_2:13911643-13911662 Msa0239450:intron 40.0%
TCAGTATGTGCCTATTGTTG+TGG - chr2_2:13911722-13911741 Msa0239450:intron 40.0%
TAGTAGGAATCGTCGAACAA+TGG + chr2_2:13911811-13911830 None:intergenic 40.0%
TCGACGATTCCTACTATGTT+CGG - chr2_2:13911815-13911834 Msa0239450:CDS 40.0%
!! AAGTGGGTTGTGATGGTTCT+GGG + chr2_2:13908449-13908468 None:intergenic 45.0%
!! AGTTCTGAAGTGGGTTGTGA+TGG + chr2_2:13908456-13908475 None:intergenic 45.0%
!! GTTCTTGGAGAGTTCTGAAG+TGG + chr2_2:13908466-13908485 None:intergenic 45.0%
TAGCTTCTTCTTCGCGTTCT+TGG + chr2_2:13908481-13908500 None:intergenic 45.0%
AGAAGGAAACCGAACGGAAA+AGG - chr2_2:13908565-13908584 Msa0239450:three_prime_UTR 45.0%
! CCATTCCTTCCTTTTCCGTT+CGG + chr2_2:13908577-13908596 None:intergenic 45.0%
CGAACGGAAAAGGAAGGAAT+GGG - chr2_2:13908575-13908594 Msa0239450:three_prime_UTR 45.0%
ACTGTTGCTGCTACTCTCAA+TGG + chr2_2:13909295-13909314 None:intergenic 45.0%
ATTGAGAGTAGCAGCAACAG+TGG - chr2_2:13909294-13909313 Msa0239450:CDS 45.0%
CGCTCTTCAACCACTTATAG+TGG + chr2_2:13909320-13909339 None:intergenic 45.0%
GCGTAATCCCACTACTATAG+CGG - chr2_2:13909351-13909370 Msa0239450:CDS 45.0%
ATCCCACTACTATAGCGGTT+TGG - chr2_2:13909356-13909375 Msa0239450:CDS 45.0%
CACCAAACCGCTATAGTAGT+GGG + chr2_2:13909361-13909380 None:intergenic 45.0%
GTGGCTGCTATTGCAAACTT+TGG - chr2_2:13909378-13909397 Msa0239450:intron 45.0%
GGCTGCTATTGCAAACTTTG+GGG - chr2_2:13909380-13909399 Msa0239450:intron 45.0%
AACAGAGTCAGGCAAAGCAA+AGG - chr2_2:13909584-13909603 Msa0239450:intron 45.0%
AGTTAGCCAAAGATGTGCAG+GGG + chr2_2:13910051-13910070 None:intergenic 45.0%
CAGTTAGCCAAAGATGTGCA+GGG + chr2_2:13910052-13910071 None:intergenic 45.0%
!! CGAAGTATTGGCAGATCGTA+AGG - chr2_2:13910157-13910176 Msa0239450:intron 45.0%
GGCAGATCGTAAGGATGATT+TGG - chr2_2:13910166-13910185 Msa0239450:intron 45.0%
! GTATCTAACGGCTGATTCAG+AGG - chr2_2:13910190-13910209 Msa0239450:CDS 45.0%
! ATGGAGAAAGCACAAGAGCA+AGG - chr2_2:13910293-13910312 Msa0239450:CDS 45.0%
CAGCCCAAAGCAAATACAAG+AGG + chr2_2:13910400-13910419 None:intergenic 45.0%
GAGAGAGAAAAAATGGAGGG+GGG - chr2_2:13910609-13910628 Msa0239450:intron 45.0%
GGTTGGAGAGTGATCCTATA+GGG - chr2_2:13910630-13910649 Msa0239450:intron 45.0%
GTTGGAGAGTGATCCTATAG+GGG - chr2_2:13910631-13910650 Msa0239450:intron 45.0%
GAGCGACCCTTTATAGATGT+AGG - chr2_2:13910934-13910953 Msa0239450:intron 45.0%
TACTCAAGTTCCTGGAGACA+AGG - chr2_2:13911193-13911212 Msa0239450:intron 45.0%
ACTCAAGTTCCTGGAGACAA+GGG - chr2_2:13911194-13911213 Msa0239450:intron 45.0%
! TTTTCCAATCCCTTGTCTCC+AGG + chr2_2:13911206-13911225 None:intergenic 45.0%
!! TCTTTGCTGTTATCCCTCAG+AGG - chr2_2:13911232-13911251 Msa0239450:intron 45.0%
! GCTTGTGATCTTTTCCTCTG+AGG + chr2_2:13911249-13911268 None:intergenic 45.0%
TGAAGTGTAGAGCGTAGAAC+TGG - chr2_2:13911407-13911426 Msa0239450:intron 45.0%
GGGTAATTCCATCATAAGGG+AGG + chr2_2:13911567-13911586 None:intergenic 45.0%
CCAAAGAACAACGTTCCAAG+AGG + chr2_2:13911588-13911607 None:intergenic 45.0%
CCTCTTGGAACGTTGTTCTT+TGG - chr2_2:13911585-13911604 Msa0239450:intron 45.0%
! TGTGGCTTTGCCACAACAAT+AGG + chr2_2:13911735-13911754 None:intergenic 45.0%
! CACTATTGAGCCTTGTAGAG+AGG - chr2_2:13911784-13911803 Msa0239450:CDS 45.0%
GAACAATGGTCCTCTCTACA+AGG + chr2_2:13911797-13911816 None:intergenic 45.0%
! AACTGTGGATTCGGGTTCGT+GGG + chr2_2:13908415-13908434 None:intergenic 50.0%
TGGAGGTGGAACTGTGGATT+CGG + chr2_2:13908424-13908443 None:intergenic 50.0%
!! TGTGATGGTTCTGGGTTTGG+AGG + chr2_2:13908441-13908460 None:intergenic 50.0%
!! GGTTGTGATGGTTCTGGGTT+TGG + chr2_2:13908444-13908463 None:intergenic 50.0%
!! GAAGTGGGTTGTGATGGTTC+TGG + chr2_2:13908450-13908469 None:intergenic 50.0%
GAAAGCAGAGAAGAAAGCGG+CGG - chr2_2:13908527-13908546 Msa0239450:three_prime_UTR 50.0%
GGCGAAGGAGAAGAAGAAGA+AGG - chr2_2:13908548-13908567 Msa0239450:three_prime_UTR 50.0%
GGAAACCGAACGGAAAAGGA+AGG - chr2_2:13908569-13908588 Msa0239450:three_prime_UTR 50.0%
CCGAACGGAAAAGGAAGGAA+TGG - chr2_2:13908574-13908593 Msa0239450:three_prime_UTR 50.0%
! AAGTATAGCGGGGATAACGG+AGG - chr2_2:13908602-13908621 Msa0239450:three_prime_UTR 50.0%
AACGGAGGAAGAGAGAGTGA+AGG - chr2_2:13908617-13908636 Msa0239450:three_prime_UTR 50.0%
CACACTATAACGGTGTAGCG+TGG - chr2_2:13909229-13909248 Msa0239450:CDS 50.0%
TACTCTCAATGGCACTTCGC+GGG + chr2_2:13909284-13909303 None:intergenic 50.0%
CTACTCTCAATGGCACTTCG+CGG + chr2_2:13909285-13909304 None:intergenic 50.0%
GCAACAGTGGCCACTATAAG+TGG - chr2_2:13909307-13909326 Msa0239450:CDS 50.0%
!! GTTGAAGAGCGGTGCTATCA+AGG - chr2_2:13909329-13909348 Msa0239450:CDS 50.0%
CCACCAAACCGCTATAGTAG+TGG + chr2_2:13909362-13909381 None:intergenic 50.0%
! CCACTACTATAGCGGTTTGG+TGG - chr2_2:13909359-13909378 Msa0239450:CDS 50.0%
GTCAGGCAAAGCAAAGGACT+TGG - chr2_2:13909590-13909609 Msa0239450:intron 50.0%
GTGAAACCCCTGCACATCTT+TGG - chr2_2:13910042-13910061 Msa0239450:intron 50.0%
CCAGTTAGCCAAAGATGTGC+AGG + chr2_2:13910053-13910072 None:intergenic 50.0%
CCTGCACATCTTTGGCTAAC+TGG - chr2_2:13910050-13910069 Msa0239450:intron 50.0%
ACTTGTGTTTCCAGCTGCAG+TGG + chr2_2:13910532-13910551 None:intergenic 50.0%
GAGAAAAAATGGAGGGGGGT+TGG - chr2_2:13910613-13910632 Msa0239450:intron 50.0%
GGGTTGGAGAGTGATCCTAT+AGG - chr2_2:13910629-13910648 Msa0239450:intron 50.0%
GAGTGATCCTATAGGGGATC+CGG - chr2_2:13910637-13910656 Msa0239450:intron 50.0%
TATAGGGGATCCGGATCCAT+CGG - chr2_2:13910646-13910665 Msa0239450:intron 50.0%
AGTTCCTGGAGACAAGGGAT+TGG - chr2_2:13911199-13911218 Msa0239450:intron 50.0%
! TTGTGACCGGATTTTCTGCG+AGG - chr2_2:13911536-13911555 Msa0239450:intron 50.0%
GTCACACCTCGCAGAAAATC+CGG + chr2_2:13911545-13911564 None:intergenic 50.0%
AGGTGTGACCTCCCTTATGA+TGG - chr2_2:13911556-13911575 Msa0239450:intron 50.0%
TGTTTGCTTGCGCACACCAA+GGG + chr2_2:13911662-13911681 None:intergenic 50.0%
ATGTTTGCTTGCGCACACCA+AGG + chr2_2:13911663-13911682 None:intergenic 50.0%
! GAACTGTGGATTCGGGTTCG+TGG + chr2_2:13908416-13908435 None:intergenic 55.0%
GGAGGTGGAACTGTGGATTC+GGG + chr2_2:13908423-13908442 None:intergenic 55.0%
TGGGTTTGGAGGTGGAACTG+TGG + chr2_2:13908430-13908449 None:intergenic 55.0%
!! GATGGTTCTGGGTTTGGAGG+TGG + chr2_2:13908438-13908457 None:intergenic 55.0%
GGACTATGGCGTAGTAGTGG+AGG + chr2_2:13909263-13909282 None:intergenic 55.0%
AATGGCACTTCGCGGGACTA+TGG + chr2_2:13909277-13909296 None:intergenic 55.0%
CTTTGGCTAACTGGCTGCGA+AGG - chr2_2:13910059-13910078 Msa0239450:intron 55.0%
AACTGGCTGCGAAGGAGAGA+TGG - chr2_2:13910067-13910086 Msa0239450:intron 55.0%
GATGGATCCGGATCCCCTAT+AGG + chr2_2:13910647-13910666 None:intergenic 55.0%
AGAGAAGAAAGCGGCGGCGA+AGG - chr2_2:13908533-13908552 Msa0239450:three_prime_UTR 60.0%
AACGGTGTAGCGTGGCAGTG+CGG - chr2_2:13909237-13909256 Msa0239450:CDS 60.0%
GCGGGACTATGGCGTAGTAG+TGG + chr2_2:13909266-13909285 None:intergenic 60.0%
!! GGAAGTGCTTCCACTGCAGC+TGG - chr2_2:13910519-13910538 Msa0239450:intron 60.0%
! GTGGATTCGGGTTCGTGGGC+TGG + chr2_2:13908411-13908430 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr2_2 gene 13908341 13912206 13908341 ID=Msa0239450;Name=Msa0239450
chr2_2 mRNA 13908341 13912206 13908341 ID=Msa0239450-mRNA-1;Parent=Msa0239450;Name=Msa0239450-mRNA-1;_AED=0.03;_eAED=0.03;_QI=61|1|1|1|1|1|3|790|341
chr2_2 exon 13908341 13909385 13908341 ID=Msa0239450-mRNA-1:exon:5777;Parent=Msa0239450-mRNA-1
chr2_2 exon 13910177 13910536 13910177 ID=Msa0239450-mRNA-1:exon:5776;Parent=Msa0239450-mRNA-1
chr2_2 exon 13911735 13912206 13911735 ID=Msa0239450-mRNA-1:exon:5775;Parent=Msa0239450-mRNA-1
chr2_2 five_prime_UTR 13912146 13912206 13912146 ID=Msa0239450-mRNA-1:five_prime_utr;Parent=Msa0239450-mRNA-1
chr2_2 CDS 13911735 13912145 13911735 ID=Msa0239450-mRNA-1:cds;Parent=Msa0239450-mRNA-1
chr2_2 CDS 13910177 13910536 13910177 ID=Msa0239450-mRNA-1:cds;Parent=Msa0239450-mRNA-1
chr2_2 CDS 13909131 13909385 13909131 ID=Msa0239450-mRNA-1:cds;Parent=Msa0239450-mRNA-1
chr2_2 three_prime_UTR 13908341 13909130 13908341 ID=Msa0239450-mRNA-1:three_prime_utr;Parent=Msa0239450-mRNA-1
Gene Sequence

>Msa0239450

ATGGAACCAGCCCACGAACCCGAATCCACAGTTCCACCTCCAAACCCAGAACCATCACAACCCACTTCAGAACTCTCCAAGAACGCGAAGAAGAAGCTAGACAAACAACAAAGATGGGAAGCAAAGAAAGCAGAGAAGAAAGCGGCGGCGAAGGAGAAGAAGAAGAAGGAAACCGAACGGAAAAGGAAGGAATGGGAAGAAAGTATAGCGGGGATAACGGAGGAAGAGAGAGTGAAGGTGATTGAAGCGAGAATGAGTTTACGGAAAGAGAGAATGGAGAAAAGGTTAGAAGAGAAAAATGAGAAGAAAGAGAGGCTTGTTAAAGCTAAAGAATTAGGGCAGAATGTTGTTGTTGATGTTGAATTTTCTCATCTTATGACTCCTCAAGAAATTCGTAGTCTCGTTCAACAGATAATGTATTGCTATGCGGTGAATGGAAGATGTGAAACCCCTGCACATCTTTGGCTAACTGGCTGCGAAGGAGAGATGGATAATCAATTGAAAAAGATACCGGGATTTGATAAATGGATCATCGAGAAGGAAAATAAGTCTTATATCGAAGTATTGGCAGATCGTAAGGATGATTTGGTGTATCTAACGGCTGATTCAGAGGATGTTCTTGAAGAGCTTGATTTGAACAAGATATATATAATTGGTGGATTAGTTGATAGGAATAGGTTCAAGGGGATAACTATGGAGAAAGCACAAGAGCAAGGAATTCAAACAGCTAAACTTCCTATTGGCAATTTCTTGAAGATGTCTAGTTCTCAGGTTCTTACTGTGAATCAAGTTGTAGAAATACTACTCAAGTTCCTGGAGACAAGGGATTGGAAAACTTCTTTCTTTGCTGTTATCCCTCAGAGGAAAAGATCACAAGCTGATTCAGAAGGAAATGCAGATAATACTGTAGATGAGGACAGAGATGACGATGAAGAGCAAGAGTGTGAAGAAAAAGATGATCTACTGGCAAGTAAAAAGAAATGTGTTGAGGAGATCCCTTCTAACAAACTTGTTGATGAAGTGTAG

Protein sequence

>Msa0239450

MEPAHEPESTVPPPNPEPSQPTSELSKNAKKKLDKQQRWEAKKAEKKAAAKEKKKKETERKRKEWEESIAGITEEERVKVIEARMSLRKERMEKRLEEKNEKKERLVKAKELGQNVVVDVEFSHLMTPQEIRSLVQQIMYCYAVNGRCETPAHLWLTGCEGEMDNQLKKIPGFDKWIIEKENKSYIEVLADRKDDLVYLTADSEDVLEELDLNKIYIIGGLVDRNRFKGITMEKAQEQGIQTAKLPIGNFLKMSSSQVLTVNQVVEILLKFLETRDWKTSFFAVIPQRKRSQADSEGNADNTVDEDRDDDEEQECEEKDDLLASKKKCVEEIPSNKLVDEV*