Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898410 | KEH27018.1 | 81.481 | 135 | 23 | 1 | 1 | 133 | 1 | 135 | 1.96e-69 | 217 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898410 | sp|P42849|UMEC_ARMRU | 50.980 | 102 | 49 | 1 | 25 | 126 | 1 | 101 | 1.51e-31 | 111 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898410 | A0A072UD60 | 81.481 | 135 | 23 | 1 | 1 | 133 | 1 | 135 | 9.34e-70 | 217 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0008700 | Msa0898410 | 0.803808 | 2.921048e-49 | -8.615850e-47 |
| Msa0112800 | Msa0898410 | 0.805863 | 1.086813e-49 | -8.615850e-47 |
| Msa0114960 | Msa0898410 | 0.806273 | 8.913363e-50 | -8.615850e-47 |
| Msa0648200 | Msa0898410 | 0.803966 | 2.708951e-49 | -8.615850e-47 |
| Msa0668000 | Msa0898410 | 0.802457 | 5.559026e-49 | -8.615850e-47 |
| Msa0691180 | Msa0898410 | 0.808300 | 3.314401e-50 | -8.615850e-47 |
| Msa0722660 | Msa0898410 | 0.801702 | 7.947112e-49 | -8.615850e-47 |
| Msa0741710 | Msa0898410 | 0.807788 | 4.258976e-50 | -8.615850e-47 |
| Msa0816860 | Msa0898410 | 0.812821 | 3.495534e-51 | -8.615850e-47 |
| Msa0121480 | Msa0898410 | 0.802853 | 4.607091e-49 | -8.615850e-47 |
| Msa0166580 | Msa0898410 | 0.804241 | 2.374700e-49 | -8.615850e-47 |
| Msa0174800 | Msa0898410 | 0.807739 | 4.363721e-50 | -8.615850e-47 |
| Msa0249670 | Msa0898410 | 0.805382 | 1.371311e-49 | -8.615850e-47 |
| Msa0263520 | Msa0898410 | 0.808212 | 3.461138e-50 | -8.615850e-47 |
| Msa0338670 | Msa0898410 | 0.811931 | 5.468532e-51 | -8.615850e-47 |
| Msa0486850 | Msa0898410 | 0.828646 | 8.006190e-55 | -8.615850e-47 |
| Msa0486870 | Msa0898410 | 0.812563 | 3.981200e-51 | -8.615850e-47 |
| Msa0558220 | Msa0898410 | 0.803302 | 3.719607e-49 | -8.615850e-47 |
| Msa0898410 | Msa0898490 | 0.902062 | 1.422729e-78 | -8.615850e-47 |
| Msa0898410 | Msa1031220 | 0.811535 | 6.670688e-51 | -8.615850e-47 |
| Msa0898410 | Msa1117830 | 0.803502 | 3.380612e-49 | -8.615850e-47 |
| Msa0898410 | Msa1262740 | 0.802222 | 6.213653e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898410 | MtrunA17_Chr6g0483981 | 81.481 | 135 | 23 | 1 | 1 | 133 | 1 | 135 | 1.12e-69 | 219 |
| Msa0898410 | MtrunA17_Chr4g0064041 | 67.188 | 128 | 40 | 2 | 1 | 126 | 1 | 128 | 5.12e-51 | 166 |
| Msa0898410 | MtrunA17_Chr4g0064041 | 58.416 | 101 | 42 | 0 | 26 | 126 | 190 | 290 | 9.82e-39 | 134 |
| Msa0898410 | MtrunA17_Chr2g0306461 | 45.833 | 120 | 63 | 2 | 8 | 127 | 9 | 126 | 3.53e-30 | 107 |
| Msa0898410 | MtrunA17_Chr4g0033131 | 39.024 | 123 | 73 | 2 | 7 | 127 | 8 | 130 | 3.00e-26 | 97.1 |
| Msa0898410 | MtrunA17_Chr4g0033531 | 39.024 | 123 | 73 | 2 | 7 | 127 | 8 | 130 | 3.00e-26 | 97.1 |
| Msa0898410 | MtrunA17_Chr3g0132441 | 41.322 | 121 | 66 | 3 | 6 | 126 | 5 | 120 | 3.23e-23 | 89.4 |
| Msa0898410 | MtrunA17_Chr1g0205701 | 35.714 | 126 | 77 | 2 | 1 | 126 | 1 | 122 | 9.12e-23 | 88.2 |
| Msa0898410 | MtrunA17_Chr5g0394321 | 39.048 | 105 | 62 | 1 | 22 | 126 | 21 | 123 | 1.19e-22 | 87.8 |
| Msa0898410 | MtrunA17_Chr3g0132431 | 38.211 | 123 | 71 | 3 | 6 | 128 | 5 | 122 | 9.53e-22 | 85.5 |
| Msa0898410 | MtrunA17_Chr8g0380901 | 38.710 | 124 | 67 | 3 | 6 | 127 | 5 | 121 | 1.96e-21 | 83.2 |
| Msa0898410 | MtrunA17_Chr8g0387804 | 34.167 | 120 | 78 | 1 | 8 | 127 | 10 | 128 | 3.95e-21 | 82.4 |
| Msa0898410 | MtrunA17_Chr8g0380711 | 36.607 | 112 | 62 | 2 | 16 | 127 | 20 | 122 | 1.37e-20 | 80.9 |
| Msa0898410 | MtrunA17_Chr3g0132701 | 42.453 | 106 | 56 | 3 | 22 | 126 | 21 | 122 | 5.00e-20 | 82.0 |
| Msa0898410 | MtrunA17_Chr3g0132511 | 42.453 | 106 | 56 | 3 | 22 | 126 | 21 | 122 | 6.76e-20 | 81.6 |
| Msa0898410 | MtrunA17_Chr2g0301431 | 41.346 | 104 | 54 | 3 | 22 | 125 | 27 | 123 | 2.15e-19 | 78.2 |
| Msa0898410 | MtrunA17_Chr7g0253641 | 42.056 | 107 | 58 | 2 | 22 | 128 | 21 | 123 | 4.35e-19 | 79.7 |
| Msa0898410 | MtrunA17_Chr7g0253761 | 39.815 | 108 | 59 | 2 | 22 | 128 | 21 | 123 | 7.84e-19 | 77.8 |
| Msa0898410 | MtrunA17_Chr8g0335571 | 41.905 | 105 | 54 | 3 | 24 | 126 | 21 | 120 | 9.30e-19 | 78.2 |
| Msa0898410 | MtrunA17_Chr8g0335531 | 42.857 | 105 | 53 | 4 | 24 | 126 | 21 | 120 | 1.87e-18 | 77.0 |
| Msa0898410 | MtrunA17_Chr7g0253631 | 40.000 | 110 | 62 | 2 | 22 | 131 | 21 | 126 | 9.59e-18 | 76.3 |
| Msa0898410 | MtrunA17_Chr4g0064031 | 37.113 | 97 | 58 | 3 | 24 | 117 | 25 | 121 | 2.46e-17 | 73.6 |
| Msa0898410 | MtrunA17_Chr2g0323021 | 40.506 | 79 | 46 | 1 | 47 | 125 | 42 | 119 | 5.92e-17 | 73.9 |
| Msa0898410 | MtrunA17_Chr7g0253681 | 35.246 | 122 | 71 | 3 | 9 | 126 | 6 | 123 | 9.74e-17 | 72.0 |
| Msa0898410 | MtrunA17_Chr3g0132411 | 36.000 | 125 | 74 | 3 | 3 | 127 | 42 | 160 | 1.47e-16 | 72.0 |
| Msa0898410 | MtrunA17_Chr6g0458331 | 34.653 | 101 | 63 | 2 | 27 | 126 | 37 | 135 | 3.30e-16 | 70.9 |
| Msa0898410 | MtrunA17_Chr7g0253701 | 35.537 | 121 | 71 | 3 | 9 | 126 | 6 | 122 | 7.78e-16 | 69.7 |
| Msa0898410 | MtrunA17_Chr7g0253671 | 35.537 | 121 | 71 | 3 | 9 | 126 | 6 | 122 | 7.78e-16 | 69.7 |
| Msa0898410 | MtrunA17_Chr3g0125791 | 36.634 | 101 | 57 | 2 | 24 | 124 | 30 | 123 | 1.18e-15 | 68.6 |
| Msa0898410 | MtrunA17_Chr1g0177341 | 34.454 | 119 | 71 | 3 | 11 | 126 | 7 | 121 | 1.43e-15 | 68.9 |
| Msa0898410 | MtrunA17_Chr1g0177331 | 34.454 | 119 | 71 | 3 | 11 | 126 | 7 | 121 | 1.43e-15 | 68.9 |
| Msa0898410 | MtrunA17_Chr2g0331181 | 31.496 | 127 | 84 | 2 | 1 | 126 | 1 | 125 | 1.55e-15 | 69.7 |
| Msa0898410 | MtrunA17_Chr3g0125761 | 32.500 | 120 | 74 | 3 | 8 | 127 | 14 | 126 | 4.29e-15 | 67.0 |
| Msa0898410 | MtrunA17_Chr1g0196801 | 36.538 | 104 | 61 | 2 | 24 | 127 | 20 | 118 | 5.49e-15 | 67.8 |
| Msa0898410 | MtrunA17_Chr1g0188981 | 34.653 | 101 | 65 | 1 | 27 | 126 | 29 | 129 | 6.63e-15 | 68.2 |
| Msa0898410 | MtrunA17_Chr7g0253731 | 33.333 | 111 | 68 | 2 | 12 | 120 | 8 | 114 | 1.18e-14 | 66.6 |
| Msa0898410 | MtrunA17_Chr1g0150131 | 31.193 | 109 | 67 | 2 | 35 | 135 | 34 | 142 | 3.34e-14 | 65.9 |
| Msa0898410 | MtrunA17_Chr1g0211101 | 28.455 | 123 | 83 | 2 | 8 | 129 | 14 | 132 | 2.61e-13 | 63.5 |
| Msa0898410 | MtrunA17_Chr4g0062341 | 28.099 | 121 | 82 | 3 | 8 | 126 | 14 | 131 | 5.08e-13 | 62.8 |
| Msa0898410 | MtrunA17_Chr4g0062311 | 28.099 | 121 | 82 | 3 | 8 | 126 | 14 | 131 | 5.08e-13 | 62.8 |
| Msa0898410 | MtrunA17_Chr2g0324721 | 31.200 | 125 | 72 | 3 | 24 | 137 | 24 | 145 | 2.42e-12 | 61.2 |
| Msa0898410 | MtrunA17_Chr8g0360371 | 31.624 | 117 | 76 | 2 | 8 | 124 | 7 | 119 | 2.95e-12 | 62.4 |
| Msa0898410 | MtrunA17_Chr4g0041811 | 28.037 | 107 | 77 | 0 | 18 | 124 | 23 | 129 | 2.98e-12 | 61.2 |
| Msa0898410 | MtrunA17_Chr3g0136871 | 31.034 | 116 | 69 | 2 | 24 | 128 | 24 | 139 | 1.41e-11 | 58.9 |
| Msa0898410 | MtrunA17_Chr4g0073901 | 26.562 | 128 | 93 | 1 | 1 | 127 | 3 | 130 | 3.31e-11 | 58.2 |
| Msa0898410 | MtrunA17_Chr6g0459441 | 34.286 | 105 | 63 | 4 | 23 | 126 | 22 | 121 | 4.42e-11 | 57.8 |
| Msa0898410 | MtrunA17_Chr2g0289741 | 28.148 | 135 | 85 | 5 | 7 | 137 | 5 | 131 | 6.05e-11 | 57.0 |
| Msa0898410 | MtrunA17_Chr4g0040291 | 32.039 | 103 | 68 | 1 | 24 | 126 | 22 | 122 | 7.43e-11 | 57.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0898410 | AT5G20230.1 | 48.039 | 102 | 52 | 1 | 25 | 126 | 23 | 123 | 7.54e-29 | 104 |
| Msa0898410 | AT3G17675.1 | 36.364 | 121 | 73 | 1 | 8 | 128 | 13 | 129 | 4.35e-23 | 87.8 |
| Msa0898410 | AT2G32300.1 | 39.062 | 128 | 73 | 3 | 1 | 128 | 1 | 123 | 9.86e-23 | 90.5 |
| Msa0898410 | AT2G32300.2 | 39.062 | 128 | 73 | 3 | 1 | 128 | 31 | 153 | 1.54e-22 | 90.5 |
| Msa0898410 | AT2G25060.1 | 41.525 | 118 | 65 | 3 | 22 | 135 | 26 | 143 | 1.70e-20 | 82.8 |
| Msa0898410 | AT5G26330.1 | 35.294 | 119 | 75 | 1 | 8 | 126 | 5 | 121 | 2.84e-20 | 82.4 |
| Msa0898410 | AT3G20570.1 | 34.400 | 125 | 78 | 2 | 1 | 122 | 1 | 124 | 7.18e-20 | 81.6 |
| Msa0898410 | AT2G26720.1 | 40.164 | 122 | 64 | 5 | 8 | 128 | 14 | 127 | 2.42e-19 | 80.1 |
| Msa0898410 | AT2G31050.1 | 38.211 | 123 | 72 | 2 | 12 | 133 | 13 | 132 | 4.98e-18 | 76.6 |
| Msa0898410 | AT3G60270.1 | 39.806 | 103 | 57 | 3 | 24 | 126 | 23 | 120 | 5.31e-18 | 76.3 |
| Msa0898410 | AT4G31840.1 | 36.364 | 121 | 75 | 2 | 8 | 126 | 7 | 127 | 1.15e-17 | 75.1 |
| Msa0898410 | AT3G60280.1 | 38.835 | 103 | 58 | 2 | 24 | 126 | 21 | 118 | 5.10e-16 | 72.0 |
| Msa0898410 | AT4G30590.1 | 31.933 | 119 | 79 | 2 | 8 | 124 | 8 | 126 | 1.86e-15 | 69.7 |
| Msa0898410 | AT5G07475.1 | 35.577 | 104 | 62 | 2 | 24 | 127 | 27 | 125 | 5.19e-15 | 68.6 |
| Msa0898410 | AT1G72230.1 | 40.244 | 82 | 48 | 1 | 45 | 126 | 37 | 117 | 7.00e-15 | 68.2 |
| Msa0898410 | AT2G44790.1 | 36.036 | 111 | 60 | 5 | 18 | 126 | 23 | 124 | 2.11e-14 | 67.4 |
| Msa0898410 | AT1G79800.1 | 30.645 | 124 | 79 | 3 | 11 | 129 | 14 | 135 | 2.43e-14 | 67.0 |
| Msa0898410 | AT1G22480.1 | 31.496 | 127 | 74 | 2 | 1 | 127 | 1 | 114 | 3.40e-14 | 66.2 |
| Msa0898410 | AT1G64640.1 | 31.707 | 123 | 79 | 2 | 8 | 126 | 10 | 131 | 4.73e-14 | 66.2 |
| Msa0898410 | AT2G02850.1 | 33.621 | 116 | 67 | 3 | 9 | 124 | 21 | 126 | 7.75e-14 | 64.3 |
| Msa0898410 | AT4G27520.1 | 33.333 | 114 | 74 | 1 | 11 | 124 | 15 | 126 | 1.25e-13 | 66.6 |
| Msa0898410 | AT3G18590.1 | 31.707 | 123 | 77 | 4 | 8 | 126 | 7 | 126 | 2.48e-13 | 64.3 |
| Msa0898410 | AT5G25090.1 | 35.052 | 97 | 63 | 0 | 30 | 126 | 30 | 126 | 5.67e-13 | 63.2 |
| Msa0898410 | AT1G45063.2 | 33.028 | 109 | 70 | 2 | 27 | 134 | 149 | 255 | 5.87e-13 | 64.3 |
| Msa0898410 | AT1G48940.1 | 32.381 | 105 | 67 | 2 | 27 | 129 | 26 | 128 | 7.91e-13 | 62.8 |
| Msa0898410 | AT1G45063.1 | 33.028 | 109 | 70 | 2 | 27 | 134 | 149 | 255 | 1.47e-12 | 63.5 |
| Msa0898410 | AT5G14345.1 | 26.891 | 119 | 81 | 3 | 9 | 126 | 1 | 114 | 1.80e-12 | 60.8 |
| Msa0898410 | AT4G28365.1 | 34.000 | 100 | 64 | 2 | 27 | 126 | 29 | 126 | 5.59e-12 | 60.8 |
| Msa0898410 | AT3G27200.1 | 29.752 | 121 | 77 | 4 | 9 | 126 | 6 | 121 | 8.20e-12 | 59.7 |
| Msa0898410 | AT4G32490.1 | 26.891 | 119 | 85 | 1 | 8 | 126 | 12 | 128 | 4.51e-11 | 58.5 |
| Msa0898410 | AT4G01380.1 | 34.694 | 98 | 61 | 3 | 34 | 129 | 79 | 175 | 7.62e-11 | 57.8 |
| Msa0898410 | AT3G53330.1 | 34.906 | 106 | 66 | 2 | 24 | 128 | 185 | 288 | 7.71e-11 | 58.5 |
Find 33 sgRNAs with CRISPR-Local
Find 35 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TATTTCATATGTACCGTTAC+TGG | 0.314883 | 6_1:+91974197 | Msa0898410:CDS |
| ACCATGGCAAGCAACATAAA+TGG | 0.379823 | 6_1:+91973791 | None:intergenic |
| CTATATCAGTGGAAGGGTGC+TGG | 0.436825 | 6_1:-91974275 | None:intergenic |
| CTCATGAGAGACACCTTAGC+TGG | 0.440760 | 6_1:-91974161 | None:intergenic |
| GATCACAATTCTATGTCAAC+TGG | 0.459472 | 6_1:+91973915 | Msa0898410:CDS |
| GCAGTGGCTAACCTTCTTCA+TGG | 0.479052 | 6_1:+91973833 | Msa0898410:CDS |
| ACCATTTATGTTGCTTGCCA+TGG | 0.484297 | 6_1:-91973792 | None:intergenic |
| AAGGTGTCTCTCATGAGTGC+AGG | 0.497615 | 6_1:+91974167 | Msa0898410:CDS |
| CCGTGGGTGATGACTTAGGC+TGG | 0.505012 | 6_1:+91973876 | Msa0898410:CDS |
| GGCTGGATTATCCCAACCGT+TGG | 0.506002 | 6_1:+91973893 | Msa0898410:CDS |
| GTTACTGGTCACTGTTCTGC+TGG | 0.511691 | 6_1:+91974212 | Msa0898410:CDS |
| TAGAATTGTGATCCAACGGT+TGG | 0.521337 | 6_1:-91973905 | None:intergenic |
| TTGCTACGGATCCATGAAGA+AGG | 0.528261 | 6_1:-91973844 | None:intergenic |
| GAATGCACACGCCGTGGCAA+AGG | 0.533207 | 6_1:+91974076 | Msa0898410:CDS |
| AGAATTGTGATCCAACGGTT+GGG | 0.536039 | 6_1:-91973904 | None:intergenic |
| TCTGCTTTCGATAGTTGCAA+TGG | 0.540088 | 6_1:+91974107 | Msa0898410:CDS |
| CTTAAATCTATATCAGTGGA+AGG | 0.546850 | 6_1:-91974282 | None:intergenic |
| CAATGGAACCAACGCACTTG+TGG | 0.564659 | 6_1:+91974124 | Msa0898410:CDS |
| TAAGTCATCACCCACGGTGA+AGG | 0.570272 | 6_1:-91973870 | None:intergenic |
| TATGACAAAGCCTCCAGCTA+AGG | 0.573588 | 6_1:+91974148 | Msa0898410:CDS |
| GACATAGAATTGTGATCCAA+CGG | 0.579776 | 6_1:-91973909 | None:intergenic |
| AGCAGAACAGTGACCAGTAA+CGG | 0.582060 | 6_1:-91974210 | None:intergenic |
| TGTCATAACCACAAGTGCGT+TGG | 0.590117 | 6_1:-91974132 | None:intergenic |
| AGGTGTCTCTCATGAGTGCA+GGG | 0.602357 | 6_1:+91974168 | Msa0898410:CDS |
| TTCACCGTAGGTGACACTCT+TGG | 0.604216 | 6_1:+91973953 | Msa0898410:CDS |
| TTCACCGTGGGTGATGACTT+AGG | 0.609147 | 6_1:+91973872 | Msa0898410:CDS |
| TTAAATCTATATCAGTGGAA+GGG | 0.611961 | 6_1:-91974281 | None:intergenic |
| TCAATTGAATGCACACGCCG+TGG | 0.614375 | 6_1:+91974070 | Msa0898410:CDS |
| AAGAGTGTCACCTACGGTGA+AGG | 0.615747 | 6_1:-91973951 | None:intergenic |
| ACCAATAAAACCTTCACCGT+AGG | 0.655037 | 6_1:+91973941 | Msa0898410:CDS |
| ATGAGAGACACCTTAGCTGG+AGG | 0.666881 | 6_1:-91974158 | None:intergenic |
| CCAGCCTAAGTCATCACCCA+CGG | 0.672113 | 6_1:-91973876 | None:intergenic |
| CATACCAAGAGTGTCACCTA+CGG | 0.673615 | 6_1:-91973957 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| TATTTCATATGTACCGTTAC+TGG | + | chr6_1:91974197-91974216 | Msa0898410:CDS | 30.0% | |
| GACATAGAATTGTGATCCAA+CGG | - | chr6_1:91973912-91973931 | None:intergenic | 35.0% | |
| GATCACAATTCTATGTCAAC+TGG | + | chr6_1:91973915-91973934 | Msa0898410:CDS | 35.0% | |
| ! | AGATTTTGTTACCTTTGCCA+CGG | - | chr6_1:91974090-91974109 | None:intergenic | 35.0% |
| ! | GGTGCTGGAAAAAAGATAAT+CGG | - | chr6_1:91974263-91974282 | None:intergenic | 35.0% |
| AGAATTGTGATCCAACGGTT+GGG | - | chr6_1:91973907-91973926 | None:intergenic | 40.0% | |
| TAGAATTGTGATCCAACGGT+TGG | - | chr6_1:91973908-91973927 | None:intergenic | 40.0% | |
| ACCAATAAAACCTTCACCGT+AGG | + | chr6_1:91973941-91973960 | Msa0898410:CDS | 40.0% | |
| !! | ACCTACGGTGAAGGTTTTAT+TGG | - | chr6_1:91973945-91973964 | None:intergenic | 40.0% |
| TCTGCTTTCGATAGTTGCAA+TGG | + | chr6_1:91974107-91974126 | Msa0898410:CDS | 40.0% | |
| TTGCTACGGATCCATGAAGA+AGG | - | chr6_1:91973847-91973866 | None:intergenic | 45.0% | |
| ! | CACGGTGAAGGTTTTTGCTA+CGG | - | chr6_1:91973861-91973880 | None:intergenic | 45.0% |
| GTAGCAAAAACCTTCACCGT+GGG | + | chr6_1:91973860-91973879 | Msa0898410:CDS | 45.0% | |
| !! | CATACCAAGAGTGTCACCTA+CGG | - | chr6_1:91973960-91973979 | None:intergenic | 45.0% |
| TGTCATAACCACAAGTGCGT+TGG | - | chr6_1:91974135-91974154 | None:intergenic | 45.0% | |
| TATGACAAAGCCTCCAGCTA+AGG | + | chr6_1:91974148-91974167 | Msa0898410:CDS | 45.0% | |
| AGCAGAACAGTGACCAGTAA+CGG | - | chr6_1:91974213-91974232 | None:intergenic | 45.0% | |
| !! | TGTTTTTGTGCTGCTCGCAG+TGG | + | chr6_1:91973817-91973836 | Msa0898410:CDS | 50.0% |
| GCAGTGGCTAACCTTCTTCA+TGG | + | chr6_1:91973833-91973852 | Msa0898410:CDS | 50.0% | |
| CGTAGCAAAAACCTTCACCG+TGG | + | chr6_1:91973859-91973878 | Msa0898410:CDS | 50.0% | |
| TAAGTCATCACCCACGGTGA+AGG | - | chr6_1:91973873-91973892 | None:intergenic | 50.0% | |
| TTCACCGTGGGTGATGACTT+AGG | + | chr6_1:91973872-91973891 | Msa0898410:CDS | 50.0% | |
| !! | AAGAGTGTCACCTACGGTGA+AGG | - | chr6_1:91973954-91973973 | None:intergenic | 50.0% |
| TTCACCGTAGGTGACACTCT+TGG | + | chr6_1:91973953-91973972 | Msa0898410:CDS | 50.0% | |
| TCAATTGAATGCACACGCCG+TGG | + | chr6_1:91974070-91974089 | Msa0898410:CDS | 50.0% | |
| CAATGGAACCAACGCACTTG+TGG | + | chr6_1:91974124-91974143 | Msa0898410:CDS | 50.0% | |
| ATGAGAGACACCTTAGCTGG+AGG | - | chr6_1:91974161-91974180 | None:intergenic | 50.0% | |
| CTCATGAGAGACACCTTAGC+TGG | - | chr6_1:91974164-91974183 | None:intergenic | 50.0% | |
| ! | AAGGTGTCTCTCATGAGTGC+AGG | + | chr6_1:91974167-91974186 | Msa0898410:CDS | 50.0% |
| AGGTGTCTCTCATGAGTGCA+GGG | + | chr6_1:91974168-91974187 | Msa0898410:CDS | 50.0% | |
| GTTACTGGTCACTGTTCTGC+TGG | + | chr6_1:91974212-91974231 | Msa0898410:CDS | 50.0% | |
| CCAGCCTAAGTCATCACCCA+CGG | - | chr6_1:91973879-91973898 | None:intergenic | 55.0% | |
| GGCTGGATTATCCCAACCGT+TGG | + | chr6_1:91973893-91973912 | Msa0898410:CDS | 55.0% | |
| CCGTGGGTGATGACTTAGGC+TGG | + | chr6_1:91973876-91973895 | Msa0898410:CDS | 60.0% | |
| GAATGCACACGCCGTGGCAA+AGG | + | chr6_1:91974076-91974095 | Msa0898410:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_1 | gene | 91973794 | 91974292 | 91973794 | ID=Msa0898410;Name=Msa0898410 |
| chr6_1 | mRNA | 91973794 | 91974292 | 91973794 | ID=Msa0898410-mRNA-1;Parent=Msa0898410;Name=Msa0898410-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|0|0|1|1|1|2|0|137 |
| chr6_1 | exon | 91973794 | 91973974 | 91973794 | ID=Msa0898410-mRNA-1:exon:15547;Parent=Msa0898410-mRNA-1 |
| chr6_1 | exon | 91974060 | 91974292 | 91974060 | ID=Msa0898410-mRNA-1:exon:15548;Parent=Msa0898410-mRNA-1 |
| chr6_1 | CDS | 91973794 | 91973974 | 91973794 | ID=Msa0898410-mRNA-1:cds;Parent=Msa0898410-mRNA-1 |
| chr6_1 | CDS | 91974060 | 91974292 | 91974060 | ID=Msa0898410-mRNA-1:cds;Parent=Msa0898410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
