AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0166580

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166580 MtrunA17_Chr1g0181121 98.536 683 10 0 28 710 1 683 0.0 1404
Msa0166580 MtrunA17_Chr2g0326871 60.311 708 264 5 7 708 7 703 0.0 898
Msa0166580 MtrunA17_Chr4g0028861 65.773 634 195 4 1 629 66 682 0.0 862
Msa0166580 MtrunA17_Chr2g0305771 54.505 666 284 6 58 710 30 689 0.0 741
Msa0166580 MtrunA17_Chr3g0139071 53.433 670 291 7 58 709 60 726 0.0 721
Msa0166580 MtrunA17_Chr4g0073941 51.802 666 300 10 51 709 78 729 0.0 692
Msa0166580 MtrunA17_Chr7g0228181 49.273 688 312 7 46 708 5 680 0.0 692
Msa0166580 MtrunA17_Chr1g0158861 50.143 700 313 10 18 709 44 715 0.0 686
Msa0166580 MtrunA17_Chr3g0126541 51.271 669 300 10 48 709 63 712 0.0 681
Msa0166580 MtrunA17_Chr3g0125651 50.153 652 309 4 71 706 36 687 0.0 676
Msa0166580 MtrunA17_Chr4g0001481 49.569 696 322 14 31 710 59 741 0.0 642
Msa0166580 MtrunA17_Chr7g0275581 49.163 657 300 11 7 638 7 654 0.0 632
Msa0166580 MtrunA17_Chr8g0347121 45.735 680 309 11 1 637 1 663 0.0 598
Msa0166580 MtrunA17_Chr8g0360821 35.993 614 358 13 73 664 64 664 1.76e-117 367
Msa0166580 MtrunA17_Chr6g0480851 36.498 611 363 10 47 641 160 761 9.53e-111 352
Msa0166580 MtrunA17_Chr6g0480781 35.959 584 345 15 71 636 169 741 1.53e-110 352
Msa0166580 MtrunA17_Chr6g0481021 36.573 607 353 12 47 631 99 695 5.70e-109 346
Msa0166580 MtrunA17_Chr6g0480671 38.966 580 315 12 71 627 193 756 1.50e-108 347
Msa0166580 MtrunA17_Chr7g0218341 35.788 584 353 10 71 638 109 686 7.13e-105 335
Msa0166580 MtrunA17_Chr2g0318561 37.307 453 265 8 186 625 2 448 3.30e-93 298
Msa0166580 MtrunA17_Chr6g0480741 33.390 584 353 12 71 634 115 682 3.14e-89 293
Msa0166580 MtrunA17_Chr6g0480681 30.628 653 390 14 29 635 73 708 5.49e-81 273
Msa0166580 MtrunA17_Chr2g0326861 57.513 193 82 0 145 337 14 206 1.36e-77 248
Msa0166580 MtrunA17_Chr5g0395421 37.784 352 191 8 268 605 18 355 7.90e-55 192
Msa0166580 MtrunA17_Chr2g0326851 50.704 142 59 2 567 708 3 133 1.67e-41 147
Msa0166580 MtrunA17_Chr6g0480771 35.714 252 139 7 388 626 12 253 3.73e-34 132
Msa0166580 MtrunA17_Chr6g0480841 39.899 198 99 5 442 626 2 192 5.40e-32 124
Msa0166580 MtrunA17_Chr5g0395411 33.000 200 120 3 71 269 172 358 1.38e-31 127
Msa0166580 MtrunA17_Chr6g0480751 37.313 134 83 1 71 203 98 231 3.89e-23 99.0
Msa0166580 MtrunA17_Chr6g0480791 36.885 122 75 2 71 190 172 293 1.08e-19 90.5
Msa0166580 MtrunA17_Chr4g0063141 21.605 486 282 16 70 545 45 441 1.49e-18 90.5
Msa0166580 MtrunA17_Chr2g0277651 20.619 485 305 12 122 599 106 517 3.07e-16 83.2
Msa0166580 MtrunA17_Chr6g0480821 28.824 170 112 6 187 352 25 189 3.25e-16 78.2
Msa0166580 MtrunA17_Chr5g0434371 26.257 179 129 2 342 520 282 457 3.43e-15 79.7
Msa0166580 MtrunA17_Chr2g0318551 31.609 174 102 8 61 231 54 213 4.10e-15 75.1
Msa0166580 MtrunA17_Chr3g0138671 22.831 219 165 3 341 559 241 455 1.44e-13 74.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0166580 AT2G28260.1 59.886 703 252 2 6 708 6 678 0.0 874
Msa0166580 AT2G28260.2 62.405 657 220 1 52 708 9 638 0.0 866
Msa0166580 AT2G24610.1 50.826 726 326 10 8 709 8 726 0.0 715
Msa0166580 AT2G24610.2 50.691 724 326 9 10 709 25 741 0.0 712
Msa0166580 AT4G30360.1 52.154 650 300 5 71 710 71 719 0.0 705
Msa0166580 AT2G23980.9 49.566 692 334 8 29 709 59 746 0.0 696
Msa0166580 AT2G23980.10 49.566 692 334 8 29 709 59 746 0.0 696
Msa0166580 AT2G23980.1 49.566 692 334 8 29 709 59 746 0.0 696
Msa0166580 AT2G23980.4 49.566 692 334 8 29 709 59 746 0.0 696
Msa0166580 AT2G23980.5 49.566 692 334 8 29 709 59 746 0.0 696
Msa0166580 AT2G23980.6 49.566 692 334 8 29 709 32 719 0.0 696
Msa0166580 AT4G30560.1 51.347 668 298 7 51 709 82 731 0.0 688
Msa0166580 AT4G30560.4 51.347 668 298 7 51 709 82 731 0.0 688
Msa0166580 AT5G57940.1 51.111 675 289 9 51 708 67 717 0.0 688
Msa0166580 AT5G57940.2 51.111 675 289 9 51 708 67 717 0.0 688
Msa0166580 AT4G30560.5 51.347 668 298 7 51 709 56 705 0.0 687
Msa0166580 AT4G30560.2 51.347 668 298 7 51 709 56 705 0.0 687
Msa0166580 AT4G30560.3 51.347 668 298 7 51 709 56 705 0.0 687
Msa0166580 AT5G57940.3 51.111 675 289 9 51 708 60 710 0.0 687
Msa0166580 AT1G15990.1 49.211 697 327 10 34 708 47 738 0.0 685
Msa0166580 AT2G23980.3 48.112 715 333 9 29 709 59 769 0.0 683
Msa0166580 AT2G23980.2 48.112 715 333 9 29 709 59 769 0.0 683
Msa0166580 AT2G23980.8 48.112 715 333 9 29 709 59 769 0.0 683
Msa0166580 AT2G23980.7 48.112 715 333 9 29 709 59 769 0.0 683
Msa0166580 AT1G19780.1 51.111 675 308 10 55 710 80 751 0.0 682
Msa0166580 AT5G53130.1 51.553 644 296 7 71 709 84 716 0.0 671
Msa0166580 AT3G48010.1 53.833 600 261 6 47 636 26 619 0.0 667
Msa0166580 AT5G14870.1 47.839 671 313 7 71 710 40 704 0.0 661
Msa0166580 AT1G01340.1 50.156 642 309 6 71 706 63 699 0.0 658
Msa0166580 AT1G01340.2 50.156 642 309 6 71 706 68 704 0.0 658
Msa0166580 AT4G01010.1 50.000 672 315 9 40 706 37 692 0.0 651
Msa0166580 AT4G01010.2 50.000 672 315 9 40 706 37 692 0.0 651
Msa0166580 AT2G46430.1 48.382 649 310 10 71 709 72 705 0.0 609
Msa0166580 AT2G46430.2 48.382 649 310 10 71 709 72 705 0.0 609
Msa0166580 AT1G19780.2 51.845 542 241 8 186 710 2 540 0.0 548
Msa0166580 AT2G46440.1 45.250 579 300 8 82 653 40 608 3.26e-162 481
Msa0166580 AT2G46450.4 40.989 566 314 8 82 639 40 593 9.61e-149 448
Msa0166580 AT2G46450.1 40.989 566 314 8 82 639 40 593 9.61e-149 448
Msa0166580 AT2G46450.3 39.292 565 302 9 82 639 27 557 2.57e-136 414
Msa0166580 AT2G46450.2 39.292 565 302 9 82 639 40 570 3.53e-136 415
Msa0166580 AT2G46440.2 49.199 437 209 6 223 653 1 430 5.88e-129 390
Msa0166580 AT5G54250.2 35.131 612 374 10 71 664 79 685 2.44e-114 360
Msa0166580 AT5G54250.1 35.131 612 374 10 71 664 79 685 2.44e-114 360
Msa0166580 AT5G54250.4 35.131 612 374 10 71 664 79 685 2.44e-114 360
Msa0166580 AT3G17690.1 34.053 602 370 14 52 638 139 728 2.19e-111 353
Msa0166580 AT5G54250.3 34.477 612 373 11 71 664 79 680 9.34e-109 345
Msa0166580 AT3G17700.1 36.752 585 343 14 52 621 173 745 2.09e-108 347
Msa0166580 AT5G15410.2 35.714 574 343 11 67 621 110 676 2.48e-105 337
Msa0166580 AT5G15410.1 35.714 574 343 11 67 621 111 677 3.48e-105 337
Msa0166580 AT3G17690.2 33.992 506 317 9 52 552 139 632 6.81e-98 315
Msa0166580 AT3G17700.2 36.364 506 306 10 52 553 173 666 6.20e-97 314
Msa0166580 AT3G17690.3 32.115 383 250 7 52 429 139 516 9.52e-65 224
Msa0166580 AT3G02850.3 22.323 439 267 12 82 520 85 449 6.68e-18 88.2
Msa0166580 AT3G02850.2 22.779 439 265 12 82 520 85 449 1.65e-17 87.4
Msa0166580 AT3G02850.1 22.779 439 265 13 82 520 85 449 2.89e-17 86.7
Msa0166580 AT4G22200.1 19.484 426 273 8 121 545 107 463 4.52e-14 76.6
Msa0166580 AT4G22200.2 19.484 426 273 8 121 545 107 463 4.70e-14 76.3
Msa0166580 AT5G37500.4 25.683 183 133 2 342 524 257 436 8.18e-14 75.5
Msa0166580 AT5G37500.3 25.543 184 134 2 342 525 203 383 8.24e-14 75.5
Msa0166580 AT5G37500.2 25.683 183 133 2 342 524 257 436 1.33e-13 75.1
Msa0166580 AT5G37500.1 25.683 183 133 2 342 524 257 436 1.33e-13 75.1

Find 137 sgRNAs with CRISPR-Local

Find 458 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GCTCCTTCATCTCGTGTTTC+TGG 0.112326 1_4:+47942584 Msa0166580:CDS
TTAATGATGATGATGATTAA+AGG 0.187181 1_4:+47945739 Msa0166580:CDS
ACATTATTCATATCTATATT+AGG 0.216780 1_4:+47942543 Msa0166580:CDS
GAAAACTAGTAGGTAGTTTA+AGG 0.218586 1_4:+47945643 Msa0166580:CDS
GCTGTGATTGTTGCAATTCT+TGG 0.224686 1_4:+47944052 Msa0166580:CDS
CCAAGTATTATTATTGTCTT+TGG 0.233035 1_4:+47943865 Msa0166580:CDS
ATGATGATTAAAGGAAATTT+AGG 0.238886 1_4:+47945748 Msa0166580:exon
TTAAGCCAAGCATTCCTATT+TGG 0.253153 1_4:-47943738 None:intergenic
TCAAGTTATTCAATGTATTC+TGG 0.255289 1_4:+47945621 Msa0166580:CDS
CCTCAATAAGTACTGGAAAA+TGG 0.258411 1_4:-47943127 None:intergenic
ATGTCAAATGTGAAATATTA+TGG 0.260963 1_4:+47945549 Msa0166580:CDS
GAGGACCTAGAATAAATTTA+TGG 0.262159 1_4:+47942369 Msa0166580:CDS
TTACTTGTCTAACTAGATTA+AGG 0.272354 1_4:-47944598 None:intergenic
TTGTTCCATAAATTTATTCT+AGG 0.278851 1_4:-47942374 None:intergenic
TGATGAATTTGCAGCTCTTC+AGG 0.284395 1_4:+47943986 Msa0166580:intron
TTGATATGCTTGGTACATTA+AGG 0.286363 1_4:+47945697 Msa0166580:CDS
ATTGAATAACTTGATCCTTT+TGG 0.295632 1_4:-47945612 None:intergenic
AACAGTCACTTCTTTCAGTT+TGG 0.303420 1_4:+47943792 Msa0166580:CDS
TGCATCAAACTACATGAAAA+AGG 0.316525 1_4:+47942640 Msa0166580:CDS
CTTGTCTTTCAATTGATAAC+AGG 0.322976 1_4:-47943635 None:intergenic
AGCAGTCGGGCGAGGGTCTA+AGG 0.324635 1_4:-47945277 None:intergenic
GCTGTAATTCCAAATATAAA+AGG 0.326602 1_4:+47943063 Msa0166580:CDS
TCATTAAAATCTGGTTCAAT+AGG 0.330248 1_4:-47945723 None:intergenic
GACAATCAAGATAATGATAT+TGG 0.332462 1_4:-47943701 None:intergenic
TATAATGCTAGGTACTCATT+TGG 0.340611 1_4:+47943040 Msa0166580:intron
TTAGGAATGAATAGTTGTTA+TGG 0.342658 1_4:+47945766 Msa0166580:three_prime_UTR
ACCTTCAATCGACCACTATA+CGG 0.343757 1_4:+47944384 Msa0166580:CDS
GGTGGGGATTGAGGAATCTA+AGG 0.352167 1_4:+47943886 Msa0166580:CDS
GAAGCTTAAGTGATCCAAAT+AGG 0.355960 1_4:+47943724 Msa0166580:CDS
CTGCAACATGTGTACTTGTT+AGG 0.369323 1_4:-47944018 None:intergenic
GACAAATGAGGTTAAGGAAA+AGG 0.372638 1_4:+47945512 Msa0166580:CDS
TGTGTATTAATTAGTATCAT+TGG 0.376461 1_4:+47945818 Msa0166580:three_prime_UTR
GAAAGAGACAAATGAGGTTA+AGG 0.381363 1_4:+47945506 Msa0166580:CDS
CTAGGGTCAAGGATGGAATT+AGG 0.384094 1_4:+47945923 Msa0166580:three_prime_UTR
TTGTTTGATTTCATTGTTTG+TGG 0.391370 1_4:+47942412 Msa0166580:CDS
TTATACAAGCAGCTTGGTTT+CGG 0.394586 1_4:+47945472 Msa0166580:CDS
TCATCATCATCATTAAAATC+TGG 0.395865 1_4:-47945732 None:intergenic
GACGCCATGACCAATTTAGA+TGG 0.405101 1_4:+47944492 Msa0166580:CDS
TCGCGAACTATGCAAGTTCC+TGG 0.405890 1_4:-47945114 None:intergenic
TCAGTTGTTTGCTATGTAAC+CGG 0.409128 1_4:-47945398 None:intergenic
CATCATTACTCCACTTGCCT+TGG 0.413407 1_4:-47943184 None:intergenic
ATGTCACGTCTCAGATCAAC+AGG 0.440991 1_4:-47944560 None:intergenic
GTATTATTATTGTCTTTGGT+GGG 0.441309 1_4:+47943869 Msa0166580:CDS
AAATTTATTCTAGGTCCTCT+AGG 0.441726 1_4:-47942365 None:intergenic
AGTCCTCTTCCATTTGATGA+TGG 0.444375 1_4:-47942290 None:intergenic
ATTGTCTTTGGTGGGGATTG+AGG 0.450681 1_4:+47943877 Msa0166580:CDS
ATATTTCTCTGCACCTCTGC+AGG 0.451022 1_4:+47945587 Msa0166580:CDS
TCTTAATAGCCATTGTCAAA+TGG 0.455145 1_4:-47945966 None:intergenic
ACGACCAACGGTGGTAGAAC+TGG 0.455245 1_4:+47945192 Msa0166580:CDS
GAGTAGCTACCCATCTAAAT+TGG 0.455345 1_4:-47944502 None:intergenic
AGAGGAAGAAGCATGAGATA+TGG 0.455456 1_4:+47945666 Msa0166580:CDS
CTTAAATCAAGCAATCTATC+AGG 0.455643 1_4:+47943756 Msa0166580:CDS
AGTATTATTATTGTCTTTGG+TGG 0.455701 1_4:+47943868 Msa0166580:CDS
GGAAACACAGCAGTCGGGCG+AGG 0.464302 1_4:-47945285 None:intergenic
TCATCTCGTGTTTCTGGTCG+AGG 0.464605 1_4:+47942590 Msa0166580:CDS
GATTGTTGCAATTCTTGGAT+TGG 0.464760 1_4:+47944057 Msa0166580:CDS
CTCACTGTGCGAGTTGATGA+AGG 0.471556 1_4:-47945306 None:intergenic
CAAGGCAAGTGGAGTAATGA+TGG 0.472612 1_4:+47943185 Msa0166580:CDS
ATGTATTCTGGAAAACTAGT+AGG 0.473124 1_4:+47945633 Msa0166580:CDS
GTGATCCAAATAGGAATGCT+TGG 0.473435 1_4:+47943733 Msa0166580:CDS
GTCGCCTGAGCTTATTCTGC+AGG 0.473910 1_4:-47945226 None:intergenic
ATAATGCTAGGTACTCATTT+GGG 0.476442 1_4:+47943041 Msa0166580:intron
GTAGTTTGATGCAATCTTTG+AGG 0.478756 1_4:-47942630 None:intergenic
ATGAATAGTTGTTATGGAGA+AGG 0.485081 1_4:+47945772 Msa0166580:three_prime_UTR
AAGTGTATTGATATGTCAAT+TGG 0.485639 1_4:+47942473 Msa0166580:CDS
AGAAGGTGAAGAAAGTCAAA+TGG 0.488166 1_4:+47942208 Msa0166580:CDS
ATAAACAAGCCATCATCAAA+TGG 0.489789 1_4:+47942281 Msa0166580:CDS
TTGAAAGACAAGATGAATGT+TGG 0.490493 1_4:+47943646 Msa0166580:CDS
ATGAAGAGCATTTCGTCGAC+AGG 0.493141 1_4:-47945144 None:intergenic
GATACAACCTCAATAAGTAC+TGG 0.495573 1_4:-47943134 None:intergenic
TGCTACAAACTTTAAATCCT+CGG 0.498284 1_4:-47945364 None:intergenic
GCCGTATAGTGGTCGATTGA+AGG 0.500147 1_4:-47944385 None:intergenic
CTGTAATTCCAAATATAAAA+GGG 0.501630 1_4:+47943064 Msa0166580:CDS
CCAAAGACAATAATAATACT+TGG 0.503297 1_4:-47943865 None:intergenic
GCACCTCTGCAGGTGCCAAA+AGG 0.504350 1_4:+47945597 Msa0166580:CDS
CAGGAATATACCTGAGGAAG+TGG 0.505032 1_4:-47942692 None:intergenic
TCAGGTAACGAGGGAGCTGC+CGG 0.505935 1_4:-47944457 None:intergenic
GAAATGCTCTTCATCGTTCG+AGG 0.508603 1_4:+47945153 Msa0166580:CDS
TCATCCATCTGATCAAATAG+TGG 0.519800 1_4:-47945042 None:intergenic
CAGAAAGATGGATGCATCAC+CGG 0.521281 1_4:+47944438 Msa0166580:CDS
TTAATTAGTATCATTGGTAG+CGG 0.523534 1_4:+47945824 Msa0166580:three_prime_UTR
ATCAAGGCATGTAGTTCGCC+TGG 0.524733 1_4:+47943101 Msa0166580:CDS
TTAGATTCTATTCACATCAG+TGG 0.525876 1_4:+47945430 Msa0166580:CDS
CCACTCTTCCAGCCGTATAG+TGG 0.529262 1_4:-47944396 None:intergenic
TGCAGCACTACCACTTCCTC+AGG 0.529548 1_4:+47942682 Msa0166580:CDS
ACTGGTAAGTAAAAGAAAAG+TGG 0.529988 1_4:-47942437 None:intergenic
TCAATCGACCACTATACGGC+TGG 0.530054 1_4:+47944388 Msa0166580:CDS
TATTATTATTGTCTTTGGTG+GGG 0.530464 1_4:+47943870 Msa0166580:CDS
ATTCACATCAGTGGAGGACA+TGG 0.530701 1_4:+47945439 Msa0166580:CDS
TTGGTTATCTTAGATGATAG+AGG 0.537065 1_4:-47943165 None:intergenic
GGTACCACTATTTGATCAGA+TGG 0.540996 1_4:+47945038 Msa0166580:intron
CTGTTATATCAAGAGTCGTA+AGG 0.542793 1_4:+47941899 Msa0166580:CDS
GTTCCTGGAGTGCATAGAGT+TGG 0.542992 1_4:-47945099 None:intergenic
ATGAAGGAAACACAGCAGTC+GGG 0.545943 1_4:-47945290 None:intergenic
AATTTATTCTAGGTCCTCTA+GGG 0.546116 1_4:-47942364 None:intergenic
CGACCAGAAACACGAGATGA+AGG 0.546693 1_4:-47942587 None:intergenic
CCACTATACGGCTGGAAGAG+TGG 0.546695 1_4:+47944396 Msa0166580:CDS
TATTTGATCAGATGGATGAC+AGG 0.547337 1_4:+47945046 Msa0166580:CDS
GATGAAGGAAACACAGCAGT+CGG 0.548177 1_4:-47945291 None:intergenic
TTAGATTCTTGCACGACCAA+CGG 0.554372 1_4:+47945180 Msa0166580:CDS
GAAGGACAGATACAGAAAGA+TGG 0.556176 1_4:+47944426 Msa0166580:CDS
GAGAATGAAAGAGACAAATG+AGG 0.556459 1_4:+47945500 Msa0166580:CDS
AAATGCTTCGACTTCTGTGA+TGG 0.558128 1_4:-47945331 None:intergenic
TGGAAGAGTGGCGAATAAGA+AGG 0.567637 1_4:+47944408 Msa0166580:CDS
GTCTAACTAGATTAAGGCAA+AGG 0.567848 1_4:-47944592 None:intergenic
AACACCTGCAGAATAAGCTC+AGG 0.570561 1_4:+47945222 Msa0166580:CDS
AAGCCATCATCAAATGGAAG+AGG 0.574296 1_4:+47942287 Msa0166580:CDS
CTAGTAGGTAGTTTAAGGAG+AGG 0.578326 1_4:+47945648 Msa0166580:CDS
GGTGCTGAACTTGATATGCT+TGG 0.578331 1_4:+47945687 Msa0166580:CDS
GAAACACAGCAGTCGGGCGA+GGG 0.579139 1_4:-47945284 None:intergenic
TTGTAGCAGCACAATTCCGC+CGG 0.583306 1_4:+47945379 Msa0166580:CDS
CTACCCATCTAAATTGGTCA+TGG 0.585160 1_4:-47944496 None:intergenic
ACGCCATGACCAATTTAGAT+GGG 0.585828 1_4:+47944493 Msa0166580:CDS
AAACCAACTCTATGCACTCC+AGG 0.588925 1_4:+47945096 Msa0166580:CDS
GATTCTATTCACATCAGTGG+AGG 0.595512 1_4:+47945433 Msa0166580:CDS
GGGCGAGGGTCTAAGGCCCA+TGG 0.598732 1_4:-47945270 None:intergenic
AGCTACTCGTGGAGTTGACG+AGG 0.602552 1_4:+47944517 Msa0166580:CDS
TGTTAGATGCAATATGTGAA+AGG 0.604722 1_4:+47945070 Msa0166580:CDS
AGCATTTGCACTCATTGCCG+AGG 0.611919 1_4:+47945347 Msa0166580:CDS
CTGATGTGAATAGAATCTAA+AGG 0.613822 1_4:-47945427 None:intergenic
TCTAAGATAACCAAGGCAAG+TGG 0.615553 1_4:+47943174 Msa0166580:CDS
ATGAGGAGTGAATACAAGCA+TGG 0.616963 1_4:+47942248 Msa0166580:CDS
GCAGCTCCCTCGTTACCTGA+AGG 0.626636 1_4:+47944460 Msa0166580:CDS
AGATAATGATATTGGCAATG+TGG 0.627476 1_4:-47943693 None:intergenic
TTTAGATGGGTAGCTACTCG+TGG 0.627869 1_4:+47944506 Msa0166580:CDS
GGTCAGAAATGATTGCATCA+AGG 0.631571 1_4:+47943085 Msa0166580:CDS
ATAAGCTCAGGCGACTTCTG+CGG 0.636175 1_4:+47945234 Msa0166580:CDS
TAACTAGATTAAGGCAAAGG+TGG 0.642852 1_4:-47944589 None:intergenic
GTTGTTTGCTATGTAACCGG+CGG 0.650163 1_4:-47945395 None:intergenic
AAAACCAGTTCTACCACCGT+TGG 0.651859 1_4:-47945196 None:intergenic
AGTACTGGAAAATGGACACC+AGG 0.653611 1_4:-47943119 None:intergenic
TTCACATCAGTGGAGGACAT+GGG 0.654472 1_4:+47945440 Msa0166580:CDS
TCTATCATCTAAGATAACCA+AGG 0.655489 1_4:+47943167 Msa0166580:CDS
TGAAGAGCATTTCGTCGACA+GGG 0.658976 1_4:-47945143 None:intergenic
GGAACTTGCATAGTTCGCGA+AGG 0.669380 1_4:+47945117 Msa0166580:CDS
AAATGAGTGCATATGAGATG+AGG 0.698871 1_4:+47942231 Msa0166580:CDS
GATTCTTGCACGACCAACGG+TGG 0.711618 1_4:+47945183 Msa0166580:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATTAATTACAATGTTAAA+GGG - chr1_4:47941938-47941957 None:intergenic 10.0%
!!! TTTTTTTACAAAAATATGTT+TGG + chr1_4:47942122-47942141 Msa0166580:intron 10.0%
!! ATATTAATTACAATGTTAAA+GGG - chr1_4:47941938-47941957 None:intergenic 10.0%
!!! TTTTTTTACAAAAATATGTT+TGG + chr1_4:47942122-47942141 Msa0166580:intron 10.0%
!! CATATTAATTACAATGTTAA+AGG - chr1_4:47941939-47941958 None:intergenic 15.0%
!! ACATTATTCATATCTATATT+AGG + chr1_4:47942543-47942562 Msa0166580:CDS 15.0%
!! GATAATTAAAAATGAATATC+AGG - chr1_4:47942714-47942733 None:intergenic 15.0%
!! AATAAGCTAAAAACAATTTA+TGG - chr1_4:47943434-47943453 None:intergenic 15.0%
!! TATGAAAATAAAACAACTTA+TGG + chr1_4:47944291-47944310 Msa0166580:intron 15.0%
!! CAATAAAAGAAATAATGTAA+CGG - chr1_4:47944356-47944375 None:intergenic 15.0%
!! CATATTAATTACAATGTTAA+AGG - chr1_4:47941939-47941958 None:intergenic 15.0%
!! ACATTATTCATATCTATATT+AGG + chr1_4:47942543-47942562 Msa0166580:CDS 15.0%
!! GATAATTAAAAATGAATATC+AGG - chr1_4:47942714-47942733 None:intergenic 15.0%
!! AATAAGCTAAAAACAATTTA+TGG - chr1_4:47943434-47943453 None:intergenic 15.0%
!! TATGAAAATAAAACAACTTA+TGG + chr1_4:47944291-47944310 Msa0166580:intron 15.0%
!! CAATAAAAGAAATAATGTAA+CGG - chr1_4:47944356-47944375 None:intergenic 15.0%
!! TTGTTCCATAAATTTATTCT+AGG - chr1_4:47942377-47942396 None:intergenic 20.0%
!!! TATTTTAATTATGCGAAGAA+CGG - chr1_4:47942974-47942993 None:intergenic 20.0%
!! GATAATTCATATATAATGCT+AGG + chr1_4:47943029-47943048 Msa0166580:intron 20.0%
!! CTGTAATTCCAAATATAAAA+GGG + chr1_4:47943064-47943083 Msa0166580:CDS 20.0%
!!! GTATTACGAAAAACATTTTT+CGG - chr1_4:47943280-47943299 None:intergenic 20.0%
!!! ACCTTTTCTTTATTTCAAAA+AGG + chr1_4:47943593-47943612 Msa0166580:intron 20.0%
!!! ACCTTTTTGAAATAAAGAAA+AGG - chr1_4:47943597-47943616 None:intergenic 20.0%
!!! CTTTATTTCAAAAAGGTTTT+AGG + chr1_4:47943600-47943619 Msa0166580:intron 20.0%
!! AGAATTGGTTAGAATAAATA+TGG - chr1_4:47943965-47943984 None:intergenic 20.0%
!! ATTCACTAATTTAGATTAGA+CGG + chr1_4:47944699-47944718 Msa0166580:intron 20.0%
!! TTCTAAATCAGTAAAAATTG+TGG + chr1_4:47944774-47944793 Msa0166580:intron 20.0%
!! AAAAATTATGTGATTAAGAG+TGG - chr1_4:47944909-47944928 None:intergenic 20.0%
!!! ATTAAGAATGAAGTACTAAT+TGG + chr1_4:47945001-47945020 Msa0166580:intron 20.0%
!! ATGTCAAATGTGAAATATTA+TGG + chr1_4:47945549-47945568 Msa0166580:CDS 20.0%
!!! TTAATGATGATGATGATTAA+AGG + chr1_4:47945739-47945758 Msa0166580:CDS 20.0%
!! ATGATGATTAAAGGAAATTT+AGG + chr1_4:47945748-47945767 Msa0166580:exon 20.0%
!! TGTGTATTAATTAGTATCAT+TGG + chr1_4:47945818-47945837 Msa0166580:three_prime_UTR 20.0%
!!! GCATAACTTATATCAATTTT+AGG + chr1_4:47945900-47945919 Msa0166580:three_prime_UTR 20.0%
!! TTGTTCCATAAATTTATTCT+AGG - chr1_4:47942377-47942396 None:intergenic 20.0%
!!! TATTTTAATTATGCGAAGAA+CGG - chr1_4:47942974-47942993 None:intergenic 20.0%
!! GATAATTCATATATAATGCT+AGG + chr1_4:47943029-47943048 Msa0166580:intron 20.0%
!! CTGTAATTCCAAATATAAAA+GGG + chr1_4:47943064-47943083 Msa0166580:CDS 20.0%
!!! GTATTACGAAAAACATTTTT+CGG - chr1_4:47943280-47943299 None:intergenic 20.0%
!!! ACCTTTTCTTTATTTCAAAA+AGG + chr1_4:47943593-47943612 Msa0166580:intron 20.0%
!!! ACCTTTTTGAAATAAAGAAA+AGG - chr1_4:47943597-47943616 None:intergenic 20.0%
!!! CTTTATTTCAAAAAGGTTTT+AGG + chr1_4:47943600-47943619 Msa0166580:intron 20.0%
!! AGAATTGGTTAGAATAAATA+TGG - chr1_4:47943965-47943984 None:intergenic 20.0%
!! ATTCACTAATTTAGATTAGA+CGG + chr1_4:47944699-47944718 Msa0166580:intron 20.0%
!! TTCTAAATCAGTAAAAATTG+TGG + chr1_4:47944774-47944793 Msa0166580:intron 20.0%
!! AAAAATTATGTGATTAAGAG+TGG - chr1_4:47944909-47944928 None:intergenic 20.0%
!!! ATTAAGAATGAAGTACTAAT+TGG + chr1_4:47945001-47945020 Msa0166580:intron 20.0%
!! ATGTCAAATGTGAAATATTA+TGG + chr1_4:47945549-47945568 Msa0166580:CDS 20.0%
!!! TTAATGATGATGATGATTAA+AGG + chr1_4:47945739-47945758 Msa0166580:CDS 20.0%
!! ATGATGATTAAAGGAAATTT+AGG + chr1_4:47945748-47945767 Msa0166580:exon 20.0%
!! TGTGTATTAATTAGTATCAT+TGG + chr1_4:47945818-47945837 Msa0166580:three_prime_UTR 20.0%
!!! GCATAACTTATATCAATTTT+AGG + chr1_4:47945900-47945919 Msa0166580:three_prime_UTR 20.0%
! GAAAAAGAGAAATTACAAGA+AGG + chr1_4:47942191-47942210 Msa0166580:CDS 25.0%
!! TTGTTTGATTTCATTGTTTG+TGG + chr1_4:47942412-47942431 Msa0166580:CDS 25.0%
!! AAGTGTATTGATATGTCAAT+TGG + chr1_4:47942473-47942492 Msa0166580:CDS 25.0%
!! ACTACATGAAAAAGGAATTT+TGG + chr1_4:47942648-47942667 Msa0166580:CDS 25.0%
! TATGTTTAAATGTTCTGTGT+TGG + chr1_4:47942909-47942928 Msa0166580:intron 25.0%
!!! AATTTTATGGTTTGCAAACA+TGG + chr1_4:47942996-47943015 Msa0166580:intron 25.0%
! GCTGTAATTCCAAATATAAA+AGG + chr1_4:47943063-47943082 Msa0166580:CDS 25.0%
!! ATTTCTGACCCTTTTATATT+TGG - chr1_4:47943075-47943094 None:intergenic 25.0%
! GACAATCAAGATAATGATAT+TGG - chr1_4:47943704-47943723 None:intergenic 25.0%
! CCAAAGACAATAATAATACT+TGG - chr1_4:47943868-47943887 None:intergenic 25.0%
! CCAAGTATTATTATTGTCTT+TGG + chr1_4:47943865-47943884 Msa0166580:CDS 25.0%
! AGTATTATTATTGTCTTTGG+TGG + chr1_4:47943868-47943887 Msa0166580:CDS 25.0%
! GTATTATTATTGTCTTTGGT+GGG + chr1_4:47943869-47943888 Msa0166580:CDS 25.0%
! TATTATTATTGTCTTTGGTG+GGG + chr1_4:47943870-47943889 Msa0166580:CDS 25.0%
! TTACTTGTCTAACTAGATTA+AGG - chr1_4:47944601-47944620 None:intergenic 25.0%
!! GCTTTTTATTACACAGATTA+TGG + chr1_4:47944655-47944674 Msa0166580:intron 25.0%
! ATATTCCAGAAATTCATTCA+TGG + chr1_4:47944809-47944828 Msa0166580:intron 25.0%
!! ATTGAATAACTTGATCCTTT+TGG - chr1_4:47945615-47945634 None:intergenic 25.0%
! TCAAGTTATTCAATGTATTC+TGG + chr1_4:47945621-47945640 Msa0166580:CDS 25.0%
!! TCATTAAAATCTGGTTCAAT+AGG - chr1_4:47945726-47945745 None:intergenic 25.0%
! TCATCATCATCATTAAAATC+TGG - chr1_4:47945735-47945754 None:intergenic 25.0%
! TTAGGAATGAATAGTTGTTA+TGG + chr1_4:47945766-47945785 Msa0166580:three_prime_UTR 25.0%
! TTAATTAGTATCATTGGTAG+CGG + chr1_4:47945824-47945843 Msa0166580:three_prime_UTR 25.0%
!! ACTTATATCAATTTTAGGCT+AGG + chr1_4:47945905-47945924 Msa0166580:three_prime_UTR 25.0%
!! CTTATATCAATTTTAGGCTA+GGG + chr1_4:47945906-47945925 Msa0166580:three_prime_UTR 25.0%
! GAAAAAGAGAAATTACAAGA+AGG + chr1_4:47942191-47942210 Msa0166580:CDS 25.0%
!! TTGTTTGATTTCATTGTTTG+TGG + chr1_4:47942412-47942431 Msa0166580:CDS 25.0%
!! AAGTGTATTGATATGTCAAT+TGG + chr1_4:47942473-47942492 Msa0166580:CDS 25.0%
!! ACTACATGAAAAAGGAATTT+TGG + chr1_4:47942648-47942667 Msa0166580:CDS 25.0%
! TATGTTTAAATGTTCTGTGT+TGG + chr1_4:47942909-47942928 Msa0166580:intron 25.0%
!!! AATTTTATGGTTTGCAAACA+TGG + chr1_4:47942996-47943015 Msa0166580:intron 25.0%
! GCTGTAATTCCAAATATAAA+AGG + chr1_4:47943063-47943082 Msa0166580:CDS 25.0%
!! ATTTCTGACCCTTTTATATT+TGG - chr1_4:47943075-47943094 None:intergenic 25.0%
! GACAATCAAGATAATGATAT+TGG - chr1_4:47943704-47943723 None:intergenic 25.0%
! CCAAAGACAATAATAATACT+TGG - chr1_4:47943868-47943887 None:intergenic 25.0%
! CCAAGTATTATTATTGTCTT+TGG + chr1_4:47943865-47943884 Msa0166580:CDS 25.0%
! AGTATTATTATTGTCTTTGG+TGG + chr1_4:47943868-47943887 Msa0166580:CDS 25.0%
! GTATTATTATTGTCTTTGGT+GGG + chr1_4:47943869-47943888 Msa0166580:CDS 25.0%
! TATTATTATTGTCTTTGGTG+GGG + chr1_4:47943870-47943889 Msa0166580:CDS 25.0%
! TTACTTGTCTAACTAGATTA+AGG - chr1_4:47944601-47944620 None:intergenic 25.0%
!! GCTTTTTATTACACAGATTA+TGG + chr1_4:47944655-47944674 Msa0166580:intron 25.0%
! ATATTCCAGAAATTCATTCA+TGG + chr1_4:47944809-47944828 Msa0166580:intron 25.0%
!! ATTGAATAACTTGATCCTTT+TGG - chr1_4:47945615-47945634 None:intergenic 25.0%
! TCAAGTTATTCAATGTATTC+TGG + chr1_4:47945621-47945640 Msa0166580:CDS 25.0%
!! TCATTAAAATCTGGTTCAAT+AGG - chr1_4:47945726-47945745 None:intergenic 25.0%
! TCATCATCATCATTAAAATC+TGG - chr1_4:47945735-47945754 None:intergenic 25.0%
! TTAGGAATGAATAGTTGTTA+TGG + chr1_4:47945766-47945785 Msa0166580:three_prime_UTR 25.0%
! TTAATTAGTATCATTGGTAG+CGG + chr1_4:47945824-47945843 Msa0166580:three_prime_UTR 25.0%
!! ACTTATATCAATTTTAGGCT+AGG + chr1_4:47945905-47945924 Msa0166580:three_prime_UTR 25.0%
!! CTTATATCAATTTTAGGCTA+GGG + chr1_4:47945906-47945925 Msa0166580:three_prime_UTR 25.0%
CTTGAGCTATACAACAAAAA+TGG + chr1_4:47941873-47941892 Msa0166580:exon 30.0%
ATAAACAAGCCATCATCAAA+TGG + chr1_4:47942281-47942300 Msa0166580:CDS 30.0%
AATTTATTCTAGGTCCTCTA+GGG - chr1_4:47942367-47942386 None:intergenic 30.0%
AAATTTATTCTAGGTCCTCT+AGG - chr1_4:47942368-47942387 None:intergenic 30.0%
GAGGACCTAGAATAAATTTA+TGG + chr1_4:47942369-47942388 Msa0166580:CDS 30.0%
ACTGGTAAGTAAAAGAAAAG+TGG - chr1_4:47942440-47942459 None:intergenic 30.0%
TGCATCAAACTACATGAAAA+AGG + chr1_4:47942640-47942659 Msa0166580:CDS 30.0%
TATAATGCTAGGTACTCATT+TGG + chr1_4:47943040-47943059 Msa0166580:intron 30.0%
ATAATGCTAGGTACTCATTT+GGG + chr1_4:47943041-47943060 Msa0166580:intron 30.0%
TTGGTTATCTTAGATGATAG+AGG - chr1_4:47943168-47943187 None:intergenic 30.0%
! TCTATCATCTAAGATAACCA+AGG + chr1_4:47943167-47943186 Msa0166580:CDS 30.0%
! AGTAATGATGGAAAAAGCTT+GGG + chr1_4:47943197-47943216 Msa0166580:CDS 30.0%
CTTATTTCCGTAAGTTCTAT+AGG + chr1_4:47943448-47943467 Msa0166580:intron 30.0%
AAGCTATCCTATAGAACTTA+CGG - chr1_4:47943458-47943477 None:intergenic 30.0%
TAAGAAATGAATCAGAAGCA+AGG - chr1_4:47943573-47943592 None:intergenic 30.0%
!!! AAAAGGTTTTAGGATCAACT+TGG + chr1_4:47943610-47943629 Msa0166580:intron 30.0%
! CTTGTCTTTCAATTGATAAC+AGG - chr1_4:47943638-47943657 None:intergenic 30.0%
TTGAAAGACAAGATGAATGT+TGG + chr1_4:47943646-47943665 Msa0166580:CDS 30.0%
AGATAATGATATTGGCAATG+TGG - chr1_4:47943696-47943715 None:intergenic 30.0%
CTTAAATCAAGCAATCTATC+AGG + chr1_4:47943756-47943775 Msa0166580:CDS 30.0%
! TTTTTATGATGCTGTGACTT+TGG + chr1_4:47943818-47943837 Msa0166580:CDS 30.0%
CTGCAAATTCATCATAGAAT+TGG - chr1_4:47943980-47943999 None:intergenic 30.0%
!! AAAAAAAAGTGTCACACACA+TGG - chr1_4:47944941-47944960 None:intergenic 30.0%
TGTTAGATGCAATATGTGAA+AGG + chr1_4:47945070-47945089 Msa0166580:CDS 30.0%
TGCTACAAACTTTAAATCCT+CGG - chr1_4:47945367-47945386 None:intergenic 30.0%
CTGATGTGAATAGAATCTAA+AGG - chr1_4:47945430-47945449 None:intergenic 30.0%
TTAGATTCTATTCACATCAG+TGG + chr1_4:47945430-47945449 Msa0166580:CDS 30.0%
! ATGTATTCTGGAAAACTAGT+AGG + chr1_4:47945633-47945652 Msa0166580:CDS 30.0%
GAAAACTAGTAGGTAGTTTA+AGG + chr1_4:47945643-47945662 Msa0166580:CDS 30.0%
TTGATATGCTTGGTACATTA+AGG + chr1_4:47945697-47945716 Msa0166580:CDS 30.0%
ATGAATAGTTGTTATGGAGA+AGG + chr1_4:47945772-47945791 Msa0166580:three_prime_UTR 30.0%
CTTGAGCTATACAACAAAAA+TGG + chr1_4:47941873-47941892 Msa0166580:exon 30.0%
ATAAACAAGCCATCATCAAA+TGG + chr1_4:47942281-47942300 Msa0166580:CDS 30.0%
AATTTATTCTAGGTCCTCTA+GGG - chr1_4:47942367-47942386 None:intergenic 30.0%
AAATTTATTCTAGGTCCTCT+AGG - chr1_4:47942368-47942387 None:intergenic 30.0%
GAGGACCTAGAATAAATTTA+TGG + chr1_4:47942369-47942388 Msa0166580:CDS 30.0%
ACTGGTAAGTAAAAGAAAAG+TGG - chr1_4:47942440-47942459 None:intergenic 30.0%
TGCATCAAACTACATGAAAA+AGG + chr1_4:47942640-47942659 Msa0166580:CDS 30.0%
TATAATGCTAGGTACTCATT+TGG + chr1_4:47943040-47943059 Msa0166580:intron 30.0%
ATAATGCTAGGTACTCATTT+GGG + chr1_4:47943041-47943060 Msa0166580:intron 30.0%
TTGGTTATCTTAGATGATAG+AGG - chr1_4:47943168-47943187 None:intergenic 30.0%
! TCTATCATCTAAGATAACCA+AGG + chr1_4:47943167-47943186 Msa0166580:CDS 30.0%
! AGTAATGATGGAAAAAGCTT+GGG + chr1_4:47943197-47943216 Msa0166580:CDS 30.0%
CTTATTTCCGTAAGTTCTAT+AGG + chr1_4:47943448-47943467 Msa0166580:intron 30.0%
AAGCTATCCTATAGAACTTA+CGG - chr1_4:47943458-47943477 None:intergenic 30.0%
TAAGAAATGAATCAGAAGCA+AGG - chr1_4:47943573-47943592 None:intergenic 30.0%
!!! AAAAGGTTTTAGGATCAACT+TGG + chr1_4:47943610-47943629 Msa0166580:intron 30.0%
! CTTGTCTTTCAATTGATAAC+AGG - chr1_4:47943638-47943657 None:intergenic 30.0%
TTGAAAGACAAGATGAATGT+TGG + chr1_4:47943646-47943665 Msa0166580:CDS 30.0%
AGATAATGATATTGGCAATG+TGG - chr1_4:47943696-47943715 None:intergenic 30.0%
CTTAAATCAAGCAATCTATC+AGG + chr1_4:47943756-47943775 Msa0166580:CDS 30.0%
! TTTTTATGATGCTGTGACTT+TGG + chr1_4:47943818-47943837 Msa0166580:CDS 30.0%
CTGCAAATTCATCATAGAAT+TGG - chr1_4:47943980-47943999 None:intergenic 30.0%
!! AAAAAAAAGTGTCACACACA+TGG - chr1_4:47944941-47944960 None:intergenic 30.0%
TGTTAGATGCAATATGTGAA+AGG + chr1_4:47945070-47945089 Msa0166580:CDS 30.0%
TGCTACAAACTTTAAATCCT+CGG - chr1_4:47945367-47945386 None:intergenic 30.0%
CTGATGTGAATAGAATCTAA+AGG - chr1_4:47945430-47945449 None:intergenic 30.0%
TTAGATTCTATTCACATCAG+TGG + chr1_4:47945430-47945449 Msa0166580:CDS 30.0%
! ATGTATTCTGGAAAACTAGT+AGG + chr1_4:47945633-47945652 Msa0166580:CDS 30.0%
GAAAACTAGTAGGTAGTTTA+AGG + chr1_4:47945643-47945662 Msa0166580:CDS 30.0%
TTGATATGCTTGGTACATTA+AGG + chr1_4:47945697-47945716 Msa0166580:CDS 30.0%
ATGAATAGTTGTTATGGAGA+AGG + chr1_4:47945772-47945791 Msa0166580:three_prime_UTR 30.0%
CTGTTATATCAAGAGTCGTA+AGG + chr1_4:47941899-47941918 Msa0166580:CDS 35.0%
ATGTATCAACTCATACCACT+AGG - chr1_4:47942048-47942067 None:intergenic 35.0%
AGTTCTATCTAGTAGGTCTA+GGG + chr1_4:47942074-47942093 Msa0166580:intron 35.0%
! TTCAGTGTTATTGTGAACTC+AGG + chr1_4:47942153-47942172 Msa0166580:intron 35.0%
AGAAGGTGAAGAAAGTCAAA+TGG + chr1_4:47942208-47942227 Msa0166580:CDS 35.0%
AAATGAGTGCATATGAGATG+AGG + chr1_4:47942231-47942250 Msa0166580:CDS 35.0%
!! TTTTCTGAAGATTATGACGC+AGG + chr1_4:47942323-47942342 Msa0166580:CDS 35.0%
!! ATTTTAGTATTCGACCCTAG+AGG + chr1_4:47942350-47942369 Msa0166580:CDS 35.0%
! CACTTTTCTTTCTTAGCAAC+TGG - chr1_4:47942458-47942477 None:intergenic 35.0%
GTAGTTTGATGCAATCTTTG+AGG - chr1_4:47942633-47942652 None:intergenic 35.0%
GAATATCAGGAATATACCTG+AGG - chr1_4:47942701-47942720 None:intergenic 35.0%
ATAAATCACTTCATCCTCCA+AGG + chr1_4:47942737-47942756 Msa0166580:intron 35.0%
TAAATCACTTCATCCTCCAA+GGG + chr1_4:47942738-47942757 Msa0166580:intron 35.0%
CAATGAATTGTTAGCCATGT+AGG - chr1_4:47942836-47942855 None:intergenic 35.0%
!! AATGTTCTGTGTTGGTTTGT+AGG + chr1_4:47942917-47942936 Msa0166580:intron 35.0%
!! ATGTTCTGTGTTGGTTTGTA+GGG + chr1_4:47942918-47942937 Msa0166580:intron 35.0%
AACGGCTAATACATTCTTTC+AGG - chr1_4:47942956-47942975 None:intergenic 35.0%
!! CCTCAATAAGTACTGGAAAA+TGG - chr1_4:47943130-47943149 None:intergenic 35.0%
! CCATTTTCCAGTACTTATTG+AGG + chr1_4:47943127-47943146 Msa0166580:CDS 35.0%
GATACAACCTCAATAAGTAC+TGG - chr1_4:47943137-47943156 None:intergenic 35.0%
! GAGTAATGATGGAAAAAGCT+TGG + chr1_4:47943196-47943215 Msa0166580:CDS 35.0%
CGTAATACTTGCGATCAAAA+TGG + chr1_4:47943292-47943311 Msa0166580:intron 35.0%
AGCATTTGTGATACTGTTTG+AGG + chr1_4:47943342-47943361 Msa0166580:intron 35.0%
GAAGCTTAAGTGATCCAAAT+AGG + chr1_4:47943724-47943743 Msa0166580:CDS 35.0%
TTAAGCCAAGCATTCCTATT+TGG - chr1_4:47943741-47943760 None:intergenic 35.0%
AACAGTCACTTCTTTCAGTT+TGG + chr1_4:47943792-47943811 Msa0166580:CDS 35.0%
GATTGTTGCAATTCTTGGAT+TGG + chr1_4:47944057-47944076 Msa0166580:CDS 35.0%
AGCAGGACATACATATATCA+CGG - chr1_4:47944160-47944179 None:intergenic 35.0%
GTATGTCCTGCTTAGATAAA+CGG + chr1_4:47944168-47944187 Msa0166580:intron 35.0%
AGTAAACCGTTTATCTAAGC+AGG - chr1_4:47944177-47944196 None:intergenic 35.0%
AATAATGTAACGGCGTGTTT+GGG - chr1_4:47944346-47944365 None:intergenic 35.0%
AAATAATGTAACGGCGTGTT+TGG - chr1_4:47944347-47944366 None:intergenic 35.0%
TAACTAGATTAAGGCAAAGG+TGG - chr1_4:47944592-47944611 None:intergenic 35.0%
GTCTAACTAGATTAAGGCAA+AGG - chr1_4:47944595-47944614 None:intergenic 35.0%
TATTTGCACGTAAAGTAGAG+CGG - chr1_4:47944744-47944763 None:intergenic 35.0%
CTTGACCATGAATGAATTTC+TGG - chr1_4:47944817-47944836 None:intergenic 35.0%
TAATTGGACACTAATTGCAC+AGG + chr1_4:47945017-47945036 Msa0166580:intron 35.0%
TCATCCATCTGATCAAATAG+TGG - chr1_4:47945045-47945064 None:intergenic 35.0%
TATTTGATCAGATGGATGAC+AGG + chr1_4:47945046-47945065 Msa0166580:CDS 35.0%
!! TCAGTTGTTTGCTATGTAAC+CGG - chr1_4:47945401-47945420 None:intergenic 35.0%
! CATGTTTTATACAAGCAGCT+TGG + chr1_4:47945466-47945485 Msa0166580:CDS 35.0%
TTATACAAGCAGCTTGGTTT+CGG + chr1_4:47945472-47945491 Msa0166580:CDS 35.0%
GAGAATGAAAGAGACAAATG+AGG + chr1_4:47945500-47945519 Msa0166580:CDS 35.0%
GAAAGAGACAAATGAGGTTA+AGG + chr1_4:47945506-47945525 Msa0166580:CDS 35.0%
GACAAATGAGGTTAAGGAAA+AGG + chr1_4:47945512-47945531 Msa0166580:CDS 35.0%
CTGTTATATCAAGAGTCGTA+AGG + chr1_4:47941899-47941918 Msa0166580:CDS 35.0%
ATGTATCAACTCATACCACT+AGG - chr1_4:47942048-47942067 None:intergenic 35.0%
AGTTCTATCTAGTAGGTCTA+GGG + chr1_4:47942074-47942093 Msa0166580:intron 35.0%
! TTCAGTGTTATTGTGAACTC+AGG + chr1_4:47942153-47942172 Msa0166580:intron 35.0%
AGAAGGTGAAGAAAGTCAAA+TGG + chr1_4:47942208-47942227 Msa0166580:CDS 35.0%
AAATGAGTGCATATGAGATG+AGG + chr1_4:47942231-47942250 Msa0166580:CDS 35.0%
!! TTTTCTGAAGATTATGACGC+AGG + chr1_4:47942323-47942342 Msa0166580:CDS 35.0%
!! ATTTTAGTATTCGACCCTAG+AGG + chr1_4:47942350-47942369 Msa0166580:CDS 35.0%
! CACTTTTCTTTCTTAGCAAC+TGG - chr1_4:47942458-47942477 None:intergenic 35.0%
GTAGTTTGATGCAATCTTTG+AGG - chr1_4:47942633-47942652 None:intergenic 35.0%
GAATATCAGGAATATACCTG+AGG - chr1_4:47942701-47942720 None:intergenic 35.0%
ATAAATCACTTCATCCTCCA+AGG + chr1_4:47942737-47942756 Msa0166580:intron 35.0%
TAAATCACTTCATCCTCCAA+GGG + chr1_4:47942738-47942757 Msa0166580:intron 35.0%
CAATGAATTGTTAGCCATGT+AGG - chr1_4:47942836-47942855 None:intergenic 35.0%
!! AATGTTCTGTGTTGGTTTGT+AGG + chr1_4:47942917-47942936 Msa0166580:intron 35.0%
!! ATGTTCTGTGTTGGTTTGTA+GGG + chr1_4:47942918-47942937 Msa0166580:intron 35.0%
AACGGCTAATACATTCTTTC+AGG - chr1_4:47942956-47942975 None:intergenic 35.0%
!! CCTCAATAAGTACTGGAAAA+TGG - chr1_4:47943130-47943149 None:intergenic 35.0%
! CCATTTTCCAGTACTTATTG+AGG + chr1_4:47943127-47943146 Msa0166580:CDS 35.0%
GATACAACCTCAATAAGTAC+TGG - chr1_4:47943137-47943156 None:intergenic 35.0%
! GAGTAATGATGGAAAAAGCT+TGG + chr1_4:47943196-47943215 Msa0166580:CDS 35.0%
CGTAATACTTGCGATCAAAA+TGG + chr1_4:47943292-47943311 Msa0166580:intron 35.0%
AGCATTTGTGATACTGTTTG+AGG + chr1_4:47943342-47943361 Msa0166580:intron 35.0%
GAAGCTTAAGTGATCCAAAT+AGG + chr1_4:47943724-47943743 Msa0166580:CDS 35.0%
TTAAGCCAAGCATTCCTATT+TGG - chr1_4:47943741-47943760 None:intergenic 35.0%
AACAGTCACTTCTTTCAGTT+TGG + chr1_4:47943792-47943811 Msa0166580:CDS 35.0%
GATTGTTGCAATTCTTGGAT+TGG + chr1_4:47944057-47944076 Msa0166580:CDS 35.0%
AGCAGGACATACATATATCA+CGG - chr1_4:47944160-47944179 None:intergenic 35.0%
GTATGTCCTGCTTAGATAAA+CGG + chr1_4:47944168-47944187 Msa0166580:intron 35.0%
AGTAAACCGTTTATCTAAGC+AGG - chr1_4:47944177-47944196 None:intergenic 35.0%
AATAATGTAACGGCGTGTTT+GGG - chr1_4:47944346-47944365 None:intergenic 35.0%
AAATAATGTAACGGCGTGTT+TGG - chr1_4:47944347-47944366 None:intergenic 35.0%
TAACTAGATTAAGGCAAAGG+TGG - chr1_4:47944592-47944611 None:intergenic 35.0%
GTCTAACTAGATTAAGGCAA+AGG - chr1_4:47944595-47944614 None:intergenic 35.0%
TATTTGCACGTAAAGTAGAG+CGG - chr1_4:47944744-47944763 None:intergenic 35.0%
CTTGACCATGAATGAATTTC+TGG - chr1_4:47944817-47944836 None:intergenic 35.0%
TAATTGGACACTAATTGCAC+AGG + chr1_4:47945017-47945036 Msa0166580:intron 35.0%
TCATCCATCTGATCAAATAG+TGG - chr1_4:47945045-47945064 None:intergenic 35.0%
TATTTGATCAGATGGATGAC+AGG + chr1_4:47945046-47945065 Msa0166580:CDS 35.0%
!! TCAGTTGTTTGCTATGTAAC+CGG - chr1_4:47945401-47945420 None:intergenic 35.0%
! CATGTTTTATACAAGCAGCT+TGG + chr1_4:47945466-47945485 Msa0166580:CDS 35.0%
TTATACAAGCAGCTTGGTTT+CGG + chr1_4:47945472-47945491 Msa0166580:CDS 35.0%
GAGAATGAAAGAGACAAATG+AGG + chr1_4:47945500-47945519 Msa0166580:CDS 35.0%
GAAAGAGACAAATGAGGTTA+AGG + chr1_4:47945506-47945525 Msa0166580:CDS 35.0%
GACAAATGAGGTTAAGGAAA+AGG + chr1_4:47945512-47945531 Msa0166580:CDS 35.0%
ATACCACTAGGCTACTTCTT+CGG - chr1_4:47942036-47942055 None:intergenic 40.0%
TCGAGTGAGTTCTATCTAGT+AGG + chr1_4:47942067-47942086 Msa0166580:intron 40.0%
GAGTTCTATCTAGTAGGTCT+AGG + chr1_4:47942073-47942092 Msa0166580:intron 40.0%
ATGAGGAGTGAATACAAGCA+TGG + chr1_4:47942248-47942267 Msa0166580:CDS 40.0%
AAGCCATCATCAAATGGAAG+AGG + chr1_4:47942287-47942306 Msa0166580:CDS 40.0%
AGTCCTCTTCCATTTGATGA+TGG - chr1_4:47942293-47942312 None:intergenic 40.0%
TTATTGCGACATTCTTTGGC+TGG - chr1_4:47942811-47942830 None:intergenic 40.0%
GGCATTATTGCGACATTCTT+TGG - chr1_4:47942815-47942834 None:intergenic 40.0%
ATGTCGCAATAATGCCTACA+TGG + chr1_4:47942819-47942838 Msa0166580:intron 40.0%
TTGTACTCGCTCACACTTTA+CGG - chr1_4:47942887-47942906 None:intergenic 40.0%
GGTCAGAAATGATTGCATCA+AGG + chr1_4:47943085-47943104 Msa0166580:CDS 40.0%
! TCTAAGATAACCAAGGCAAG+TGG + chr1_4:47943174-47943193 Msa0166580:CDS 40.0%
ATTTATGTGAGCGTACGTAC+TGG + chr1_4:47943315-47943334 Msa0166580:intron 40.0%
GTGATCCAAATAGGAATGCT+TGG + chr1_4:47943733-47943752 Msa0166580:CDS 40.0%
TGATGAATTTGCAGCTCTTC+AGG + chr1_4:47943986-47944005 Msa0166580:intron 40.0%
CTGCAACATGTGTACTTGTT+AGG - chr1_4:47944021-47944040 None:intergenic 40.0%
GCTGTGATTGTTGCAATTCT+TGG + chr1_4:47944052-47944071 Msa0166580:CDS 40.0%
CAGCTTAAGCTATACTAGAG+AGG + chr1_4:47944267-47944286 Msa0166580:intron 40.0%
ACCTTCAATCGACCACTATA+CGG + chr1_4:47944384-47944403 Msa0166580:CDS 40.0%
GAAGGACAGATACAGAAAGA+TGG + chr1_4:47944426-47944445 Msa0166580:CDS 40.0%
! CATTTTCCTTCAGGTAACGA+GGG - chr1_4:47944469-47944488 None:intergenic 40.0%
! ACATTTTCCTTCAGGTAACG+AGG - chr1_4:47944470-47944489 None:intergenic 40.0%
ACGCCATGACCAATTTAGAT+GGG + chr1_4:47944493-47944512 Msa0166580:CDS 40.0%
CTACCCATCTAAATTGGTCA+TGG - chr1_4:47944499-47944518 None:intergenic 40.0%
GAGTAGCTACCCATCTAAAT+TGG - chr1_4:47944505-47944524 None:intergenic 40.0%
TTTAGATTAGACGGATCTGC+TGG + chr1_4:47944708-47944727 Msa0166580:intron 40.0%
TTAGATTAGACGGATCTGCT+GGG + chr1_4:47944709-47944728 Msa0166580:intron 40.0%
! GACCAATGCGATCTCAATTT+TGG + chr1_4:47944840-47944859 Msa0166580:intron 40.0%
GACCAAAATTGAGATCGCAT+TGG - chr1_4:47944845-47944864 None:intergenic 40.0%
GGTACCACTATTTGATCAGA+TGG + chr1_4:47945038-47945057 Msa0166580:intron 40.0%
TTAGATTCTTGCACGACCAA+CGG + chr1_4:47945180-47945199 Msa0166580:CDS 40.0%
AAATGCTTCGACTTCTGTGA+TGG - chr1_4:47945334-47945353 None:intergenic 40.0%
GATTCTATTCACATCAGTGG+AGG + chr1_4:47945433-47945452 Msa0166580:CDS 40.0%
CTAGTAGGTAGTTTAAGGAG+AGG + chr1_4:47945648-47945667 Msa0166580:CDS 40.0%
! AGAGGAAGAAGCATGAGATA+TGG + chr1_4:47945666-47945685 Msa0166580:CDS 40.0%
! TCAATTTTAGGCTAGGGTCA+AGG + chr1_4:47945912-47945931 Msa0166580:three_prime_UTR 40.0%
ATACCACTAGGCTACTTCTT+CGG - chr1_4:47942036-47942055 None:intergenic 40.0%
TCGAGTGAGTTCTATCTAGT+AGG + chr1_4:47942067-47942086 Msa0166580:intron 40.0%
GAGTTCTATCTAGTAGGTCT+AGG + chr1_4:47942073-47942092 Msa0166580:intron 40.0%
ATGAGGAGTGAATACAAGCA+TGG + chr1_4:47942248-47942267 Msa0166580:CDS 40.0%
AAGCCATCATCAAATGGAAG+AGG + chr1_4:47942287-47942306 Msa0166580:CDS 40.0%
AGTCCTCTTCCATTTGATGA+TGG - chr1_4:47942293-47942312 None:intergenic 40.0%
TTATTGCGACATTCTTTGGC+TGG - chr1_4:47942811-47942830 None:intergenic 40.0%
GGCATTATTGCGACATTCTT+TGG - chr1_4:47942815-47942834 None:intergenic 40.0%
ATGTCGCAATAATGCCTACA+TGG + chr1_4:47942819-47942838 Msa0166580:intron 40.0%
TTGTACTCGCTCACACTTTA+CGG - chr1_4:47942887-47942906 None:intergenic 40.0%
GGTCAGAAATGATTGCATCA+AGG + chr1_4:47943085-47943104 Msa0166580:CDS 40.0%
! TCTAAGATAACCAAGGCAAG+TGG + chr1_4:47943174-47943193 Msa0166580:CDS 40.0%
ATTTATGTGAGCGTACGTAC+TGG + chr1_4:47943315-47943334 Msa0166580:intron 40.0%
GTGATCCAAATAGGAATGCT+TGG + chr1_4:47943733-47943752 Msa0166580:CDS 40.0%
TGATGAATTTGCAGCTCTTC+AGG + chr1_4:47943986-47944005 Msa0166580:intron 40.0%
CTGCAACATGTGTACTTGTT+AGG - chr1_4:47944021-47944040 None:intergenic 40.0%
GCTGTGATTGTTGCAATTCT+TGG + chr1_4:47944052-47944071 Msa0166580:CDS 40.0%
CAGCTTAAGCTATACTAGAG+AGG + chr1_4:47944267-47944286 Msa0166580:intron 40.0%
ACCTTCAATCGACCACTATA+CGG + chr1_4:47944384-47944403 Msa0166580:CDS 40.0%
GAAGGACAGATACAGAAAGA+TGG + chr1_4:47944426-47944445 Msa0166580:CDS 40.0%
! CATTTTCCTTCAGGTAACGA+GGG - chr1_4:47944469-47944488 None:intergenic 40.0%
! ACATTTTCCTTCAGGTAACG+AGG - chr1_4:47944470-47944489 None:intergenic 40.0%
ACGCCATGACCAATTTAGAT+GGG + chr1_4:47944493-47944512 Msa0166580:CDS 40.0%
CTACCCATCTAAATTGGTCA+TGG - chr1_4:47944499-47944518 None:intergenic 40.0%
GAGTAGCTACCCATCTAAAT+TGG - chr1_4:47944505-47944524 None:intergenic 40.0%
TTTAGATTAGACGGATCTGC+TGG + chr1_4:47944708-47944727 Msa0166580:intron 40.0%
TTAGATTAGACGGATCTGCT+GGG + chr1_4:47944709-47944728 Msa0166580:intron 40.0%
! GACCAATGCGATCTCAATTT+TGG + chr1_4:47944840-47944859 Msa0166580:intron 40.0%
GACCAAAATTGAGATCGCAT+TGG - chr1_4:47944845-47944864 None:intergenic 40.0%
GGTACCACTATTTGATCAGA+TGG + chr1_4:47945038-47945057 Msa0166580:intron 40.0%
TTAGATTCTTGCACGACCAA+CGG + chr1_4:47945180-47945199 Msa0166580:CDS 40.0%
AAATGCTTCGACTTCTGTGA+TGG - chr1_4:47945334-47945353 None:intergenic 40.0%
GATTCTATTCACATCAGTGG+AGG + chr1_4:47945433-47945452 Msa0166580:CDS 40.0%
CTAGTAGGTAGTTTAAGGAG+AGG + chr1_4:47945648-47945667 Msa0166580:CDS 40.0%
! AGAGGAAGAAGCATGAGATA+TGG + chr1_4:47945666-47945685 Msa0166580:CDS 40.0%
! TCAATTTTAGGCTAGGGTCA+AGG + chr1_4:47945912-47945931 Msa0166580:three_prime_UTR 40.0%
TACCACTAGGCTACTTCTTC+GGG - chr1_4:47942035-47942054 None:intergenic 45.0%
CAGGAATATACCTGAGGAAG+TGG - chr1_4:47942695-47942714 None:intergenic 45.0%
TGTACTCGCTCACACTTTAC+GGG - chr1_4:47942886-47942905 None:intergenic 45.0%
! AGTACTGGAAAATGGACACC+AGG - chr1_4:47943122-47943141 None:intergenic 45.0%
CATCATTACTCCACTTGCCT+TGG - chr1_4:47943187-47943206 None:intergenic 45.0%
CAAGGCAAGTGGAGTAATGA+TGG + chr1_4:47943185-47943204 Msa0166580:CDS 45.0%
! ATGATGGAAAAAGCTTGGGC+TGG + chr1_4:47943201-47943220 Msa0166580:CDS 45.0%
ATTGTCTTTGGTGGGGATTG+AGG + chr1_4:47943877-47943896 Msa0166580:CDS 45.0%
!! GTGCTTTTTGCACTGCTCAT+AGG + chr1_4:47944079-47944098 Msa0166580:CDS 45.0%
TGGAAGAGTGGCGAATAAGA+AGG + chr1_4:47944408-47944427 Msa0166580:CDS 45.0%
CAGAAAGATGGATGCATCAC+CGG + chr1_4:47944438-47944457 Msa0166580:CDS 45.0%
GACGCCATGACCAATTTAGA+TGG + chr1_4:47944492-47944511 Msa0166580:CDS 45.0%
TTTAGATGGGTAGCTACTCG+TGG + chr1_4:47944506-47944525 Msa0166580:CDS 45.0%
ATGTCACGTCTCAGATCAAC+AGG - chr1_4:47944563-47944582 None:intergenic 45.0%
AAACCAACTCTATGCACTCC+AGG + chr1_4:47945096-47945115 Msa0166580:CDS 45.0%
!! TGAAGAGCATTTCGTCGACA+GGG - chr1_4:47945146-47945165 None:intergenic 45.0%
!! ATGAAGAGCATTTCGTCGAC+AGG - chr1_4:47945147-47945166 None:intergenic 45.0%
GAAATGCTCTTCATCGTTCG+AGG + chr1_4:47945153-47945172 Msa0166580:CDS 45.0%
AAAACCAGTTCTACCACCGT+TGG - chr1_4:47945199-47945218 None:intergenic 45.0%
AACACCTGCAGAATAAGCTC+AGG + chr1_4:47945222-47945241 Msa0166580:CDS 45.0%
! CGGTGAAGAGCTTTTACCAT+GGG + chr1_4:47945254-47945273 Msa0166580:CDS 45.0%
ATGAAGGAAACACAGCAGTC+GGG - chr1_4:47945293-47945312 None:intergenic 45.0%
GATGAAGGAAACACAGCAGT+CGG - chr1_4:47945294-47945313 None:intergenic 45.0%
!! GTTGTTTGCTATGTAACCGG+CGG - chr1_4:47945398-47945417 None:intergenic 45.0%
ATTCACATCAGTGGAGGACA+TGG + chr1_4:47945439-47945458 Msa0166580:CDS 45.0%
TTCACATCAGTGGAGGACAT+GGG + chr1_4:47945440-47945459 Msa0166580:CDS 45.0%
ATATTTCTCTGCACCTCTGC+AGG + chr1_4:47945587-47945606 Msa0166580:CDS 45.0%
! GGTGCTGAACTTGATATGCT+TGG + chr1_4:47945687-47945706 Msa0166580:CDS 45.0%
! TTTTAGGCTAGGGTCAAGGA+TGG + chr1_4:47945916-47945935 Msa0166580:three_prime_UTR 45.0%
CTAGGGTCAAGGATGGAATT+AGG + chr1_4:47945923-47945942 Msa0166580:three_prime_UTR 45.0%
TACCACTAGGCTACTTCTTC+GGG - chr1_4:47942035-47942054 None:intergenic 45.0%
CAGGAATATACCTGAGGAAG+TGG - chr1_4:47942695-47942714 None:intergenic 45.0%
TGTACTCGCTCACACTTTAC+GGG - chr1_4:47942886-47942905 None:intergenic 45.0%
! AGTACTGGAAAATGGACACC+AGG - chr1_4:47943122-47943141 None:intergenic 45.0%
CATCATTACTCCACTTGCCT+TGG - chr1_4:47943187-47943206 None:intergenic 45.0%
CAAGGCAAGTGGAGTAATGA+TGG + chr1_4:47943185-47943204 Msa0166580:CDS 45.0%
! ATGATGGAAAAAGCTTGGGC+TGG + chr1_4:47943201-47943220 Msa0166580:CDS 45.0%
ATTGTCTTTGGTGGGGATTG+AGG + chr1_4:47943877-47943896 Msa0166580:CDS 45.0%
!! GTGCTTTTTGCACTGCTCAT+AGG + chr1_4:47944079-47944098 Msa0166580:CDS 45.0%
TGGAAGAGTGGCGAATAAGA+AGG + chr1_4:47944408-47944427 Msa0166580:CDS 45.0%
CAGAAAGATGGATGCATCAC+CGG + chr1_4:47944438-47944457 Msa0166580:CDS 45.0%
GACGCCATGACCAATTTAGA+TGG + chr1_4:47944492-47944511 Msa0166580:CDS 45.0%
TTTAGATGGGTAGCTACTCG+TGG + chr1_4:47944506-47944525 Msa0166580:CDS 45.0%
ATGTCACGTCTCAGATCAAC+AGG - chr1_4:47944563-47944582 None:intergenic 45.0%
AAACCAACTCTATGCACTCC+AGG + chr1_4:47945096-47945115 Msa0166580:CDS 45.0%
!! TGAAGAGCATTTCGTCGACA+GGG - chr1_4:47945146-47945165 None:intergenic 45.0%
!! ATGAAGAGCATTTCGTCGAC+AGG - chr1_4:47945147-47945166 None:intergenic 45.0%
GAAATGCTCTTCATCGTTCG+AGG + chr1_4:47945153-47945172 Msa0166580:CDS 45.0%
AAAACCAGTTCTACCACCGT+TGG - chr1_4:47945199-47945218 None:intergenic 45.0%
AACACCTGCAGAATAAGCTC+AGG + chr1_4:47945222-47945241 Msa0166580:CDS 45.0%
! CGGTGAAGAGCTTTTACCAT+GGG + chr1_4:47945254-47945273 Msa0166580:CDS 45.0%
ATGAAGGAAACACAGCAGTC+GGG - chr1_4:47945293-47945312 None:intergenic 45.0%
GATGAAGGAAACACAGCAGT+CGG - chr1_4:47945294-47945313 None:intergenic 45.0%
!! GTTGTTTGCTATGTAACCGG+CGG - chr1_4:47945398-47945417 None:intergenic 45.0%
ATTCACATCAGTGGAGGACA+TGG + chr1_4:47945439-47945458 Msa0166580:CDS 45.0%
TTCACATCAGTGGAGGACAT+GGG + chr1_4:47945440-47945459 Msa0166580:CDS 45.0%
ATATTTCTCTGCACCTCTGC+AGG + chr1_4:47945587-47945606 Msa0166580:CDS 45.0%
! GGTGCTGAACTTGATATGCT+TGG + chr1_4:47945687-47945706 Msa0166580:CDS 45.0%
! TTTTAGGCTAGGGTCAAGGA+TGG + chr1_4:47945916-47945935 Msa0166580:three_prime_UTR 45.0%
CTAGGGTCAAGGATGGAATT+AGG + chr1_4:47945923-47945942 Msa0166580:three_prime_UTR 45.0%
!!! TAATTAAAATATGAATTTTA+TGG + chr1_4:47942983-47943002 Msa0166580:intron 5.0%
!!! TAATTAAAATATGAATTTTA+TGG + chr1_4:47942983-47943002 Msa0166580:intron 5.0%
ATCCCGAAGAAGTAGCCTAG+TGG + chr1_4:47942030-47942049 Msa0166580:intron 50.0%
GCTCCTTCATCTCGTGTTTC+TGG + chr1_4:47942584-47942603 Msa0166580:CDS 50.0%
CGACCAGAAACACGAGATGA+AGG - chr1_4:47942590-47942609 None:intergenic 50.0%
!! TCATCTCGTGTTTCTGGTCG+AGG + chr1_4:47942590-47942609 Msa0166580:CDS 50.0%
ACATGTGATGAAGCCCTTGG+AGG - chr1_4:47942754-47942773 None:intergenic 50.0%
TCCAAGGGCTTCATCACATG+TGG + chr1_4:47942753-47942772 Msa0166580:intron 50.0%
ACCACATGTGATGAAGCCCT+TGG - chr1_4:47942757-47942776 None:intergenic 50.0%
ATCAAGGCATGTAGTTCGCC+TGG + chr1_4:47943101-47943120 Msa0166580:CDS 50.0%
GGTGGGGATTGAGGAATCTA+AGG + chr1_4:47943886-47943905 Msa0166580:CDS 50.0%
GCCGTATAGTGGTCGATTGA+AGG - chr1_4:47944388-47944407 None:intergenic 50.0%
TCAATCGACCACTATACGGC+TGG + chr1_4:47944388-47944407 Msa0166580:CDS 50.0%
!! GGCGTCGAACATTTTCCTTC+AGG - chr1_4:47944478-47944497 None:intergenic 50.0%
GTTCCTGGAGTGCATAGAGT+TGG - chr1_4:47945102-47945121 None:intergenic 50.0%
TCGCGAACTATGCAAGTTCC+TGG - chr1_4:47945117-47945136 None:intergenic 50.0%
GGAACTTGCATAGTTCGCGA+AGG + chr1_4:47945117-47945136 Msa0166580:CDS 50.0%
ATAAGCTCAGGCGACTTCTG+CGG + chr1_4:47945234-47945253 Msa0166580:CDS 50.0%
! GCGGTGAAGAGCTTTTACCA+TGG + chr1_4:47945253-47945272 Msa0166580:CDS 50.0%
!! CTCACTGTGCGAGTTGATGA+AGG - chr1_4:47945309-47945328 None:intergenic 50.0%
AGCATTTGCACTCATTGCCG+AGG + chr1_4:47945347-47945366 Msa0166580:CDS 50.0%
TTGTAGCAGCACAATTCCGC+CGG + chr1_4:47945379-47945398 Msa0166580:CDS 50.0%
ATCCCGAAGAAGTAGCCTAG+TGG + chr1_4:47942030-47942049 Msa0166580:intron 50.0%
GCTCCTTCATCTCGTGTTTC+TGG + chr1_4:47942584-47942603 Msa0166580:CDS 50.0%
CGACCAGAAACACGAGATGA+AGG - chr1_4:47942590-47942609 None:intergenic 50.0%
!! TCATCTCGTGTTTCTGGTCG+AGG + chr1_4:47942590-47942609 Msa0166580:CDS 50.0%
ACATGTGATGAAGCCCTTGG+AGG - chr1_4:47942754-47942773 None:intergenic 50.0%
TCCAAGGGCTTCATCACATG+TGG + chr1_4:47942753-47942772 Msa0166580:intron 50.0%
ACCACATGTGATGAAGCCCT+TGG - chr1_4:47942757-47942776 None:intergenic 50.0%
ATCAAGGCATGTAGTTCGCC+TGG + chr1_4:47943101-47943120 Msa0166580:CDS 50.0%
GGTGGGGATTGAGGAATCTA+AGG + chr1_4:47943886-47943905 Msa0166580:CDS 50.0%
GCCGTATAGTGGTCGATTGA+AGG - chr1_4:47944388-47944407 None:intergenic 50.0%
TCAATCGACCACTATACGGC+TGG + chr1_4:47944388-47944407 Msa0166580:CDS 50.0%
!! GGCGTCGAACATTTTCCTTC+AGG - chr1_4:47944478-47944497 None:intergenic 50.0%
GTTCCTGGAGTGCATAGAGT+TGG - chr1_4:47945102-47945121 None:intergenic 50.0%
TCGCGAACTATGCAAGTTCC+TGG - chr1_4:47945117-47945136 None:intergenic 50.0%
GGAACTTGCATAGTTCGCGA+AGG + chr1_4:47945117-47945136 Msa0166580:CDS 50.0%
ATAAGCTCAGGCGACTTCTG+CGG + chr1_4:47945234-47945253 Msa0166580:CDS 50.0%
! GCGGTGAAGAGCTTTTACCA+TGG + chr1_4:47945253-47945272 Msa0166580:CDS 50.0%
!! CTCACTGTGCGAGTTGATGA+AGG - chr1_4:47945309-47945328 None:intergenic 50.0%
AGCATTTGCACTCATTGCCG+AGG + chr1_4:47945347-47945366 Msa0166580:CDS 50.0%
TTGTAGCAGCACAATTCCGC+CGG + chr1_4:47945379-47945398 Msa0166580:CDS 50.0%
TGCAGCACTACCACTTCCTC+AGG + chr1_4:47942682-47942701 Msa0166580:CDS 55.0%
CCACTCTTCCAGCCGTATAG+TGG - chr1_4:47944399-47944418 None:intergenic 55.0%
CCACTATACGGCTGGAAGAG+TGG + chr1_4:47944396-47944415 Msa0166580:CDS 55.0%
AGCTACTCGTGGAGTTGACG+AGG + chr1_4:47944517-47944536 Msa0166580:CDS 55.0%
GATTCTTGCACGACCAACGG+TGG + chr1_4:47945183-47945202 Msa0166580:CDS 55.0%
ACGACCAACGGTGGTAGAAC+TGG + chr1_4:47945192-47945211 Msa0166580:CDS 55.0%
GTCGCCTGAGCTTATTCTGC+AGG - chr1_4:47945229-47945248 None:intergenic 55.0%
! GATCCTTTTGGCACCTGCAG+AGG - chr1_4:47945603-47945622 None:intergenic 55.0%
TGCAGCACTACCACTTCCTC+AGG + chr1_4:47942682-47942701 Msa0166580:CDS 55.0%
CCACTCTTCCAGCCGTATAG+TGG - chr1_4:47944399-47944418 None:intergenic 55.0%
CCACTATACGGCTGGAAGAG+TGG + chr1_4:47944396-47944415 Msa0166580:CDS 55.0%
AGCTACTCGTGGAGTTGACG+AGG + chr1_4:47944517-47944536 Msa0166580:CDS 55.0%
GATTCTTGCACGACCAACGG+TGG + chr1_4:47945183-47945202 Msa0166580:CDS 55.0%
ACGACCAACGGTGGTAGAAC+TGG + chr1_4:47945192-47945211 Msa0166580:CDS 55.0%
GTCGCCTGAGCTTATTCTGC+AGG - chr1_4:47945229-47945248 None:intergenic 55.0%
! GATCCTTTTGGCACCTGCAG+AGG - chr1_4:47945603-47945622 None:intergenic 55.0%
TCAGGTAACGAGGGAGCTGC+CGG - chr1_4:47944460-47944479 None:intergenic 60.0%
GCAGCTCCCTCGTTACCTGA+AGG + chr1_4:47944460-47944479 Msa0166580:CDS 60.0%
GAAACACAGCAGTCGGGCGA+GGG - chr1_4:47945287-47945306 None:intergenic 60.0%
GCACCTCTGCAGGTGCCAAA+AGG + chr1_4:47945597-47945616 Msa0166580:CDS 60.0%
TCAGGTAACGAGGGAGCTGC+CGG - chr1_4:47944460-47944479 None:intergenic 60.0%
GCAGCTCCCTCGTTACCTGA+AGG + chr1_4:47944460-47944479 Msa0166580:CDS 60.0%
GAAACACAGCAGTCGGGCGA+GGG - chr1_4:47945287-47945306 None:intergenic 60.0%
GCACCTCTGCAGGTGCCAAA+AGG + chr1_4:47945597-47945616 Msa0166580:CDS 60.0%
AGCAGTCGGGCGAGGGTCTA+AGG - chr1_4:47945280-47945299 None:intergenic 65.0%
GGAAACACAGCAGTCGGGCG+AGG - chr1_4:47945288-47945307 None:intergenic 65.0%
AGCAGTCGGGCGAGGGTCTA+AGG - chr1_4:47945280-47945299 None:intergenic 65.0%
GGAAACACAGCAGTCGGGCG+AGG - chr1_4:47945288-47945307 None:intergenic 65.0%
! GGGCGAGGGTCTAAGGCCCA+TGG - chr1_4:47945273-47945292 None:intergenic 70.0%
! GGGCGAGGGTCTAAGGCCCA+TGG - chr1_4:47945273-47945292 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 47941862 47945974 47941862 ID=Msa0166580;Name=Msa0166580
chr1_4 mRNA 47941862 47945974 47941862 ID=Msa0166580-mRNA-1;Parent=Msa0166580;Name=Msa0166580-mRNA-1;_AED=0.09;_eAED=0.09;_QI=30|1|1|1|1|1|7|216|710
chr1_4 exon 47941862 47941920 47941862 ID=Msa0166580-mRNA-1:exon:13933;Parent=Msa0166580-mRNA-1
chr1_4 exon 47942175 47942703 47942175 ID=Msa0166580-mRNA-1:exon:13934;Parent=Msa0166580-mRNA-1
chr1_4 exon 47943051 47943263 47943051 ID=Msa0166580-mRNA-1:exon:13935;Parent=Msa0166580-mRNA-1
chr1_4 exon 47943615 47943907 47943615 ID=Msa0166580-mRNA-1:exon:13936;Parent=Msa0166580-mRNA-1
chr1_4 exon 47944000 47944111 47944000 ID=Msa0166580-mRNA-1:exon:13937;Parent=Msa0166580-mRNA-1
chr1_4 exon 47944380 47944616 47944380 ID=Msa0166580-mRNA-1:exon:13938;Parent=Msa0166580-mRNA-1
chr1_4 exon 47945039 47945974 47945039 ID=Msa0166580-mRNA-1:exon:13939;Parent=Msa0166580-mRNA-1
chr1_4 five_prime_UTR 47941862 47941891 47941862 ID=Msa0166580-mRNA-1:five_prime_utr;Parent=Msa0166580-mRNA-1
chr1_4 CDS 47941892 47941920 47941892 ID=Msa0166580-mRNA-1:cds;Parent=Msa0166580-mRNA-1
chr1_4 CDS 47942175 47942703 47942175 ID=Msa0166580-mRNA-1:cds;Parent=Msa0166580-mRNA-1
chr1_4 CDS 47943051 47943263 47943051 ID=Msa0166580-mRNA-1:cds;Parent=Msa0166580-mRNA-1
chr1_4 CDS 47943615 47943907 47943615 ID=Msa0166580-mRNA-1:cds;Parent=Msa0166580-mRNA-1
chr1_4 CDS 47944000 47944111 47944000 ID=Msa0166580-mRNA-1:cds;Parent=Msa0166580-mRNA-1
chr1_4 CDS 47944380 47944616 47944380 ID=Msa0166580-mRNA-1:cds;Parent=Msa0166580-mRNA-1
chr1_4 CDS 47945039 47945758 47945039 ID=Msa0166580-mRNA-1:cds;Parent=Msa0166580-mRNA-1
chr1_4 three_prime_UTR 47945759 47945974 47945759 ID=Msa0166580-mRNA-1:three_prime_utr;Parent=Msa0166580-mRNA-1
Gene Sequence

>Msa0166580

ATGGCTTCTGTTATATCAAGAGTCGTAAGGTTTCATGATGATCTTGAAAAAGAGAAATTACAAGAAGGTGAAGAAAGTCAAATGGAAATGAGTGCATATGAGATGAGGAGTGAATACAAGCATGGAAAAGATGCAATAAACAAGCCATCATCAAATGGAAGAGGACTTTCAAGAGTTTTTTCTGAAGATTATGACGCAGGAGAGATTTTAGTATTCGACCCTAGAGGACCTAGAATAAATTTATGGAACAAAATATTCTTAGCAGCTTGTTTGATTTCATTGTTTGTGGATCCACTTTTCTTTTACTTACCAGTTGCTAAGAAAGAAAAGTGTATTGATATGTCAATTGGTCTTGAAGTTTCACTTACTATAATTAGAACATTTGTTGATGCATTTTACATTATTCATATCTATATTAGGTTTCAAACTGCTTATATTGCTCCTTCATCTCGTGTTTCTGGTCGAGGAGAACTCATTATTGATTCCTCAAAGATTGCATCAAACTACATGAAAAAGGAATTTTGGTCTGATCTTGTTGCAGCACTACCACTTCCTCAGGTACTCATTTGGGCTGTAATTCCAAATATAAAAGGGTCAGAAATGATTGCATCAAGGCATGTAGTTCGCCTGGTGTCCATTTTCCAGTACTTATTGAGGTTGTATCTTATTTATCCTCTATCATCTAAGATAACCAAGGCAAGTGGAGTAATGATGGAAAAAGCTTGGGCTGGTGCAGCTTATTATTTAACACTCTATATGCTTGCAAGTCATGTTTTAGGATCAACTTGGTACCTGTTATCAATTGAAAGACAAGATGAATGTTGGAAGAAAGCATGTACACTTCAATATCCACATTGCCAATATCATTATCTTGATTGTCGAAGCTTAAGTGATCCAAATAGGAATGCTTGGCTTAAATCAAGCAATCTATCAGGTCTATGTGATCAGAACAGTCACTTCTTTCAGTTTGGAATTTTTTATGATGCTGTGACTTTGGAAATAACTAGCTCAAACTTCTTAACCAAGTATTATTATTGTCTTTGGTGGGGATTGAGGAATCTAAGCTCTTCAGGAGAGAATCTCCTAACAAGTACACATGTTGCAGAGATAAATTTTGCTGTGATTGTTGCAATTCTTGGATTGGTGCTTTTTGCACTGCTCATAGGAAATATGCAAACGTACCTTCAATCGACCACTATACGGCTGGAAGAGTGGCGAATAAGAAGGACAGATACAGAAAGATGGATGCATCACCGGCAGCTCCCTCGTTACCTGAAGGAAAATGTTCGACGCCATGACCAATTTAGATGGGTAGCTACTCGTGGAGTTGACGAGGAAGCAATTCTTAGAGATCTTCCTGTTGATCTGAGACGTGACATTAAACGCCACCTTTGCCTTAATCTAGTTAGACAAGTACCACTATTTGATCAGATGGATGACAGGATGTTAGATGCAATATGTGAAAGGCTAAAACCAACTCTATGCACTCCAGGAACTTGCATAGTTCGCGAAGGCGACCCTGTCGACGAAATGCTCTTCATCGTTCGAGGACGTTTAGATTCTTGCACGACCAACGGTGGTAGAACTGGTTTTTTCAACACCTGCAGAATAAGCTCAGGCGACTTCTGCGGTGAAGAGCTTTTACCATGGGCCTTAGACCCTCGCCCGACTGCTGTGTTTCCTTCATCAACTCGCACAGTGAGAGCCATCACAGAAGTCGAAGCATTTGCACTCATTGCCGAGGATTTAAAGTTTGTAGCAGCACAATTCCGCCGGTTACATAGCAAACAACTGAGACAAACCTTTAGATTCTATTCACATCAGTGGAGGACATGGGCTGCATGTTTTATACAAGCAGCTTGGTTTCGGTATAAGAGAATGAAAGAGACAAATGAGGTTAAGGAAAAGGAGAATCTTATGATGATGTCAAATGTGAAATATTATGGAAATGATGATTCTCAATATTTCTCTGCACCTCTGCAGGTGCCAAAAGGATCAAGTTATTCAATGTATTCTGGAAAACTAGTAGGTAGTTTAAGGAGAGGAAGAAGCATGAGATATGGTGCTGAACTTGATATGCTTGGTACATTAAGGAAGCCTATTGAACCAGATTTTAATGATGATGATGATTAA
Protein sequence

>Msa0166580

MASVISRVVRFHDDLEKEKLQEGEESQMEMSAYEMRSEYKHGKDAINKPSSNGRGLSRVFSEDYDAGEILVFDPRGPRINLWNKIFLAACLISLFVDPLFFYLPVAKKEKCIDMSIGLEVSLTIIRTFVDAFYIIHIYIRFQTAYIAPSSRVSGRGELIIDSSKIASNYMKKEFWSDLVAALPLPQVLIWAVIPNIKGSEMIASRHVVRLVSIFQYLLRLYLIYPLSSKITKASGVMMEKAWAGAAYYLTLYMLASHVLGSTWYLLSIERQDECWKKACTLQYPHCQYHYLDCRSLSDPNRNAWLKSSNLSGLCDQNSHFFQFGIFYDAVTLEITSSNFLTKYYYCLWWGLRNLSSSGENLLTSTHVAEINFAVIVAILGLVLFALLIGNMQTYLQSTTIRLEEWRIRRTDTERWMHHRQLPRYLKENVRRHDQFRWVATRGVDEEAILRDLPVDLRRDIKRHLCLNLVRQVPLFDQMDDRMLDAICERLKPTLCTPGTCIVREGDPVDEMLFIVRGRLDSCTTNGGRTGFFNTCRISSGDFCGEELLPWALDPRPTAVFPSSTRTVRAITEVEAFALIAEDLKFVAAQFRRLHSKQLRQTFRFYSHQWRTWAACFIQAAWFRYKRMKETNEVKEKENLMMMSNVKYYGNDDSQYFSAPLQVPKGSSYSMYSGKLVGSLRRGRSMRYGAELDMLGTLRKPIEPDFNDDDD*