AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691180


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691180 MtrunA17_Chr4g0040261 92.241 348 6 1 1 327 102 449 0.0 659
Msa0691180 MtrunA17_Chr4g0040271 87.429 350 23 1 1 329 68 417 0.0 629
Msa0691180 MtrunA17_Chr4g0040251 79.885 348 49 1 1 327 69 416 0.0 579
Msa0691180 MtrunA17_Chr4g0040011 61.236 356 111 4 1 330 78 432 4.35e-148 425
Msa0691180 MtrunA17_Chr4g0040221 64.045 356 99 5 1 331 70 421 1.49e-147 424
Msa0691180 MtrunA17_Chr4g0040001 61.453 358 110 5 1 331 70 426 1.24e-146 421
Msa0691180 MtrunA17_Chr7g0217051 58.621 348 122 2 2 327 72 419 2.59e-145 418
Msa0691180 MtrunA17_Chr4g0040231 60.167 359 113 5 1 331 70 426 3.31e-142 410
Msa0691180 MtrunA17_Chr6g0457271 55.682 352 130 5 2 328 9 359 1.38e-130 377
Msa0691180 MtrunA17_Chr7g0248011 50.287 348 150 3 2 327 71 417 8.32e-117 345
Msa0691180 MtrunA17_Chr6g0457281 51.890 291 113 4 18 282 1 290 7.33e-100 296
Msa0691180 MtrunA17_Chr1g0147071 26.431 367 220 10 2 326 69 427 1.98e-29 117
Msa0691180 MtrunA17_Chr5g0393471 25.322 233 148 4 122 330 65 295 4.32e-13 69.3
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691180 AT5G16350.3 28.571 343 209 7 2 315 64 399 4.16e-40 147
Msa0691180 AT5G12420.2 27.654 358 211 7 2 315 64 417 6.02e-39 144
Msa0691180 AT5G12420.1 27.654 358 211 7 2 315 64 417 6.79e-39 144
Msa0691180 AT5G16350.1 26.667 360 214 6 2 315 64 419 2.20e-38 142
Msa0691180 AT3G49190.1 28.495 372 211 8 2 326 79 442 7.03e-38 141
Msa0691180 AT5G53390.1 28.571 364 213 9 2 326 75 430 1.36e-37 140
Msa0691180 AT5G22490.1 27.049 366 222 9 2 327 68 428 6.51e-35 133
Msa0691180 AT5G53380.1 27.100 369 211 10 2 324 66 422 9.51e-34 129
Msa0691180 AT3G49200.1 27.838 370 218 11 2 326 89 454 2.29e-32 126
Msa0691180 AT3G49210.1 27.128 376 218 10 3 326 92 463 3.52e-32 125
Msa0691180 AT2G38995.4 28.962 366 212 12 3 331 13 367 1.47e-31 122
Msa0691180 AT5G37300.1 28.736 348 202 11 3 315 78 414 2.58e-31 123
Msa0691180 AT5G37300.4 28.736 348 202 11 3 315 96 432 2.60e-31 123
Msa0691180 AT5G16350.2 26.235 324 189 6 2 279 64 383 4.35e-31 121
Msa0691180 AT2G38995.3 28.767 365 212 12 3 330 13 366 1.96e-30 119
Msa0691180 AT2G38995.2 28.767 365 212 12 3 330 82 435 3.81e-30 120
Msa0691180 AT1G72110.1 25.556 360 224 9 2 327 75 424 1.53e-28 115
Msa0691180 AT5G22490.2 27.358 318 186 9 2 279 68 380 4.75e-28 112
Msa0691180 AT5G37300.2 27.687 307 186 7 3 279 96 396 3.00e-25 105
Msa0691180 AT1G72110.2 24.862 362 215 11 2 327 75 415 7.78e-24 102
Msa0691180 AT3G49210.2 26.266 316 177 10 3 266 92 403 4.05e-23 99.8
Msa0691180 AT5G37300.3 29.851 201 116 5 3 181 96 293 4.40e-18 84.3

Find 84 sgRNAs with CRISPR-Local

Find 306 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCAATTCCTTCTCTGATTT+TGG 0.058227 4_4:-59211924 Msa0691180:CDS
CTAACCCCTTAGAGTTTATT+TGG 0.122697 4_4:-59210714 Msa0691180:CDS
ATCTTTAATCATTGAGCTTT+TGG 0.190332 4_4:+59211890 None:intergenic
TGCTTTCCAAATAAACTCTA+AGG 0.205452 4_4:+59210708 None:intergenic
CATTGAATGGCTCTTAGATA+TGG 0.311941 4_4:-59210641 Msa0691180:CDS
ATCAGAGAAGGAATTGAAAA+AGG 0.315071 4_4:+59211929 None:intergenic
TTGCTTAGTACTAGGAATAT+TGG 0.315217 4_4:-59210847 Msa0691180:CDS
TTCCACTGGCCCAATCAAAT+TGG 0.339045 4_4:+59210454 None:intergenic
ACAATAAATGATGTGATTAC+TGG 0.341873 4_4:-59210949 Msa0691180:CDS
TGGCAAAATGAAATGGAAAA+AGG 0.350565 4_4:-59212312 None:intergenic
CATGCAAGAAATGGACAAAA+AGG 0.359212 4_4:-59210899 Msa0691180:CDS
GTTCCTTCAGCATTACTTGT+TGG 0.367419 4_4:+59212131 None:intergenic
GGCTGATTCAAAATCTCCTT+GGG 0.370234 4_4:-59210794 Msa0691180:CDS
ACCTCAAGACAAACCCCTTT+GGG 0.376031 4_4:-59212174 Msa0691180:CDS
TTGTTGGATATTTAATCAAA+TGG 0.379077 4_4:+59212147 None:intergenic
TAGACAGGCCTTGCTTAACT+TGG 0.385229 4_4:+59210738 None:intergenic
GGAACGTGCATATGATCTTC+AGG 0.385331 4_4:+59212278 None:intergenic
TTGTCATTTCTTGAATTGAT+TGG 0.394866 4_4:+59210818 None:intergenic
AAGATGACAAGACACCTATA+TGG 0.407784 4_4:-59211872 Msa0691180:CDS
GCCAGTGGAACCTATGGCTT+TGG 0.408139 4_4:-59210441 Msa0691180:CDS
CACCTCAAGACAAACCCCTT+TGG 0.410809 4_4:-59212175 Msa0691180:CDS
CCTTCCTCGCCATTCCATAT+AGG 0.413801 4_4:+59211858 None:intergenic
ATACATGTAAGAAAGAAATA+TGG 0.415159 4_4:+59210767 None:intergenic
ACAAAGATGGCAAAATGAAA+TGG 0.416873 4_4:-59212319 None:intergenic
GCAGTTGCTAAACATATCTA+TGG 0.417209 4_4:-59210506 Msa0691180:CDS
AGGCTGATTCAAAATCTCCT+TGG 0.423311 4_4:-59210795 Msa0691180:CDS
GTTGTCATATCCAATTTGAT+TGG 0.424756 4_4:-59210464 Msa0691180:CDS
CTCTAAGGGGTTAGATAGAC+AGG 0.433414 4_4:+59210723 None:intergenic
TTGTCATATCCAATTTGATT+GGG 0.434336 4_4:-59210463 Msa0691180:CDS
TCCCAAAGGGGTTTGTCTTG+AGG 0.441665 4_4:+59212173 None:intergenic
TAGGCTATACATGCAAGAAA+TGG 0.441669 4_4:-59210908 Msa0691180:CDS
TGGTGATGGTTACTCTCTCA+TGG 0.445265 4_4:-59212081 Msa0691180:CDS
CAATAAATGATGTGATTACT+GGG 0.449069 4_4:-59210948 Msa0691180:CDS
AATCAAATGGATTTCCCAAA+GGG 0.450613 4_4:+59212160 None:intergenic
GGCTTGTACTTTACAATGAC+AGG 0.453421 4_4:-59210401 Msa0691180:CDS
TAAGCTTCATTCAAATGATA+AGG 0.458925 4_4:-59210239 Msa0691180:three_prime_UTR
GATTGGGCCAGTGGAACCTA+TGG 0.464336 4_4:-59210447 Msa0691180:CDS
GATATGGAGCTGAAATTAAG+AGG 0.473758 4_4:-59210625 Msa0691180:CDS
ACACTTGTTATCTCCAAAGA+AGG 0.477485 4_4:-59211985 Msa0691180:CDS
AGACAGGCCTTGCTTAACTT+GGG 0.483628 4_4:+59210739 None:intergenic
GCTTTCCAAATAAACTCTAA+GGG 0.494104 4_4:+59210709 None:intergenic
GGAAAAGATAGAGGAAGAGA+AGG 0.494447 4_4:+59212023 None:intergenic
TTAACTAAGAATAGCAAAAG+AGG 0.497247 4_4:-59210314 Msa0691180:three_prime_UTR
TTCAAACTTCACCATGCACT+TGG 0.505787 4_4:-59212101 Msa0691180:CDS
GCCAAAGCCATAGGTTCCAC+TGG 0.507030 4_4:+59210440 None:intergenic
ATCCAATTTGATTGGGCCAG+TGG 0.512219 4_4:-59210456 Msa0691180:CDS
GGATGGTTTGCCAAAGCCAT+AGG 0.516215 4_4:+59210431 None:intergenic
GTAAAGTACAAGCCTTTCAC+AGG 0.526010 4_4:+59210410 None:intergenic
TTGGCAAACCATCCTGTGAA+AGG 0.530246 4_4:-59210422 Msa0691180:CDS
TTGCGTGAAGGAAAAGATAG+AGG 0.531251 4_4:+59212014 None:intergenic
AAAAGGAGAATATGGTTGAA+GGG 0.537806 4_4:+59211946 None:intergenic
CCTATATGGAATGGCGAGGA+AGG 0.540963 4_4:-59211858 Msa0691180:CDS
CTTCACCATGCACTTGGTGA+TGG 0.544042 4_4:-59212095 Msa0691180:CDS
GACTGGTGTTGCTTAGTACT+AGG 0.546943 4_4:-59210855 Msa0691180:CDS
TTTGGAGATAACAAGTGTGA+TGG 0.547485 4_4:+59211990 None:intergenic
AGTACAAGCCTTTCACAGGA+TGG 0.556400 4_4:+59210414 None:intergenic
TAATCAAATGGATTTCCCAA+AGG 0.558077 4_4:+59212159 None:intergenic
GGTGATGGTTACTCTCTCAT+GGG 0.561255 4_4:-59212080 Msa0691180:CDS
AACATCAAATTCCACAGGAC+TGG 0.562193 4_4:-59210872 Msa0691180:CDS
TTATGTGTCAAAGATTATGA+TGG 0.567297 4_4:-59212204 Msa0691180:CDS
GACAGGCCTTGCTTAACTTG+GGG 0.567657 4_4:+59210740 None:intergenic
AGTTAAGTGATGGTTACCTC+AGG 0.576640 4_4:+59210374 None:intergenic
GACAACACTTGAATTTCTCA+AGG 0.583260 4_4:+59210481 None:intergenic
CACTTGTTATCTCCAAAGAA+GGG 0.584946 4_4:-59211984 Msa0691180:CDS
CTTTCCAAATAAACTCTAAG+GGG 0.586770 4_4:+59210710 None:intergenic
GCTCCATCCAAAATCAGAGA+AGG 0.601636 4_4:+59211917 None:intergenic
GACAAGACACCTATATGGAA+TGG 0.603605 4_4:-59211867 Msa0691180:CDS
AGTAACCATCACCAAGTGCA+TGG 0.610345 4_4:+59212090 None:intergenic
TATCCAACAAGTAATGCTGA+AGG 0.621598 4_4:-59212134 Msa0691180:CDS
AAGTGTGATGGTTTGCGTGA+AGG 0.622326 4_4:+59212002 None:intergenic
CAAACTAGAGAGTTAAGTGA+TGG 0.624608 4_4:+59210364 None:intergenic
ATCAATCCCCAAGTTAAGCA+AGG 0.627042 4_4:-59210746 Msa0691180:CDS
GCAAGAACATCAAATTCCAC+AGG 0.627691 4_4:-59210877 Msa0691180:CDS
ATCAATTCAAGAAATGACAA+AGG 0.634277 4_4:-59210815 Msa0691180:CDS
GCTGAAATTAAGAGGACATG+AGG 0.640508 4_4:-59210617 Msa0691180:intron
TACAATGACAGGTGGACCTG+AGG 0.642479 4_4:-59210390 Msa0691180:CDS
ATCAAATGGATTTCCCAAAG+GGG 0.644210 4_4:+59212161 None:intergenic
ATAGGGTTAGATTCAAACTG+AGG 0.647362 4_4:+59210180 None:intergenic
CTGATTCAAAATCTCCTTGG+GGG 0.654193 4_4:-59210792 Msa0691180:CDS
GCTGATTCAAAATCTCCTTG+GGG 0.657580 4_4:-59210793 Msa0691180:CDS
ACTAAGCAACACCAGTCCTG+TGG 0.659131 4_4:+59210861 None:intergenic
TTGTACTTTACAATGACAGG+TGG 0.673805 4_4:-59210398 Msa0691180:CDS
GACACCTATATGGAATGGCG+AGG 0.690350 4_4:-59211862 Msa0691180:CDS
AATAAATGATGTGATTACTG+GGG 0.718291 4_4:-59210947 Msa0691180:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CAATTGAAAAATTGTAATTA+AGG + chr4_4:59211468-59211487 None:intergenic 15.0%
!!! TAATTACAATTTTTCAATTG+TGG - chr4_4:59211468-59211487 Msa0691180:intron 15.0%
!! TGAAAAATAAATAAAAGACT+TGG + chr4_4:59211931-59211950 None:intergenic 15.0%
!!! TAATCTTTTTTAAATAGAGA+AGG + chr4_4:59212164-59212183 None:intergenic 15.0%
!! CAATTGAAAAATTGTAATTA+AGG + chr4_4:59211468-59211487 None:intergenic 15.0%
!!! TAATTACAATTTTTCAATTG+TGG - chr4_4:59211468-59211487 Msa0691180:intron 15.0%
!! TGAAAAATAAATAAAAGACT+TGG + chr4_4:59211931-59211950 None:intergenic 15.0%
!!! TAATCTTTTTTAAATAGAGA+AGG + chr4_4:59212164-59212183 None:intergenic 15.0%
!!! ATTCAATTGATTCACTTTTT+GGG + chr4_4:59210253-59210272 None:intergenic 20.0%
!!! AATTCAATTGATTCACTTTT+TGG + chr4_4:59210254-59210273 None:intergenic 20.0%
!! TTGTTGGATATTTAATCAAA+TGG + chr4_4:59210355-59210374 None:intergenic 20.0%
!! ATACATGTAAGAAAGAAATA+TGG + chr4_4:59211735-59211754 None:intergenic 20.0%
!!! ATTCAATTGATTCACTTTTT+GGG + chr4_4:59210253-59210272 None:intergenic 20.0%
!!! AATTCAATTGATTCACTTTT+TGG + chr4_4:59210254-59210273 None:intergenic 20.0%
!! TTGTTGGATATTTAATCAAA+TGG + chr4_4:59210355-59210374 None:intergenic 20.0%
!! ATACATGTAAGAAAGAAATA+TGG + chr4_4:59211735-59211754 None:intergenic 20.0%
! TTATGTGTCAAAGATTATGA+TGG - chr4_4:59210295-59210314 Msa0691180:three_prime_UTR 25.0%
!! ATCTTTAATCATTGAGCTTT+TGG + chr4_4:59210612-59210631 None:intergenic 25.0%
! TCTACCATCTTATCTAATAT+AGG + chr4_4:59210997-59211016 None:intergenic 25.0%
! AAGCTATAAGAGAAACTATT+AGG - chr4_4:59211105-59211124 Msa0691180:intron 25.0%
!! TTTTGACCTTGAAATTCTTT+AGG + chr4_4:59211291-59211310 None:intergenic 25.0%
! ACAATAAATGATGTGATTAC+TGG - chr4_4:59211550-59211569 Msa0691180:intron 25.0%
! CAATAAATGATGTGATTACT+GGG - chr4_4:59211551-59211570 Msa0691180:intron 25.0%
! AATAAATGATGTGATTACTG+GGG - chr4_4:59211552-59211571 Msa0691180:intron 25.0%
!! TTGTCATTTCTTGAATTGAT+TGG + chr4_4:59211684-59211703 None:intergenic 25.0%
! ATCAATTCAAGAAATGACAA+AGG - chr4_4:59211684-59211703 Msa0691180:intron 25.0%
! AAGCACAAAAAATAATCAAG+AGG - chr4_4:59211809-59211828 Msa0691180:intron 25.0%
! TTGTCATATCCAATTTGATT+GGG - chr4_4:59212036-59212055 Msa0691180:CDS 25.0%
! TTAACTAAGAATAGCAAAAG+AGG - chr4_4:59212185-59212204 Msa0691180:CDS 25.0%
! TAAGCTTCATTCAAATGATA+AGG - chr4_4:59212260-59212279 Msa0691180:CDS 25.0%
! TTATGTGTCAAAGATTATGA+TGG - chr4_4:59210295-59210314 Msa0691180:three_prime_UTR 25.0%
!! ATCTTTAATCATTGAGCTTT+TGG + chr4_4:59210612-59210631 None:intergenic 25.0%
! TCTACCATCTTATCTAATAT+AGG + chr4_4:59210997-59211016 None:intergenic 25.0%
! AAGCTATAAGAGAAACTATT+AGG - chr4_4:59211105-59211124 Msa0691180:intron 25.0%
!! TTTTGACCTTGAAATTCTTT+AGG + chr4_4:59211291-59211310 None:intergenic 25.0%
! ACAATAAATGATGTGATTAC+TGG - chr4_4:59211550-59211569 Msa0691180:intron 25.0%
! CAATAAATGATGTGATTACT+GGG - chr4_4:59211551-59211570 Msa0691180:intron 25.0%
! AATAAATGATGTGATTACTG+GGG - chr4_4:59211552-59211571 Msa0691180:intron 25.0%
!! TTGTCATTTCTTGAATTGAT+TGG + chr4_4:59211684-59211703 None:intergenic 25.0%
! ATCAATTCAAGAAATGACAA+AGG - chr4_4:59211684-59211703 Msa0691180:intron 25.0%
! AAGCACAAAAAATAATCAAG+AGG - chr4_4:59211809-59211828 Msa0691180:intron 25.0%
! TTGTCATATCCAATTTGATT+GGG - chr4_4:59212036-59212055 Msa0691180:CDS 25.0%
! TTAACTAAGAATAGCAAAAG+AGG - chr4_4:59212185-59212204 Msa0691180:CDS 25.0%
! TAAGCTTCATTCAAATGATA+AGG - chr4_4:59212260-59212279 Msa0691180:CDS 25.0%
!!! GATTCACTTTTTGGGAATAT+TGG + chr4_4:59210245-59210264 None:intergenic 30.0%
! AATCAAATGGATTTCCCAAA+GGG + chr4_4:59210342-59210361 None:intergenic 30.0%
! TAATCAAATGGATTTCCCAA+AGG + chr4_4:59210343-59210362 None:intergenic 30.0%
AAAAGGAGAATATGGTTGAA+GGG + chr4_4:59210556-59210575 None:intergenic 30.0%
AAAAAGGAGAATATGGTTGA+AGG + chr4_4:59210557-59210576 None:intergenic 30.0%
GGAATTGAAAAAGGAGAATA+TGG + chr4_4:59210564-59210583 None:intergenic 30.0%
ATCAGAGAAGGAATTGAAAA+AGG + chr4_4:59210573-59210592 None:intergenic 30.0%
! TTCAATTCCTTCTCTGATTT+TGG - chr4_4:59210575-59210594 Msa0691180:intron 30.0%
TTTCATCAAGAGAGAATGAT+AGG + chr4_4:59210697-59210716 None:intergenic 30.0%
AAAACAATCAAGTCTAAGCT+TGG - chr4_4:59210719-59210738 Msa0691180:CDS 30.0%
TAGAAATGACAACATTAGAG+AGG - chr4_4:59210955-59210974 Msa0691180:intron 30.0%
AGAAATGACAACATTAGAGA+GGG - chr4_4:59210956-59210975 Msa0691180:intron 30.0%
AGCACCTATATTAGATAAGA+TGG - chr4_4:59210990-59211009 Msa0691180:intron 30.0%
GACTTGTGAATTCTATAGTT+AGG - chr4_4:59211052-59211071 Msa0691180:intron 30.0%
CTATAGTTAGGAGAGTAAAT+CGG - chr4_4:59211064-59211083 Msa0691180:intron 30.0%
TTTCAGTTGTATCAACCATT+AGG + chr4_4:59211345-59211364 None:intergenic 30.0%
TTGCTTAGTACTAGGAATAT+TGG - chr4_4:59211652-59211671 Msa0691180:intron 30.0%
CTTTCCAAATAAACTCTAAG+GGG + chr4_4:59211792-59211811 None:intergenic 30.0%
GCTTTCCAAATAAACTCTAA+GGG + chr4_4:59211793-59211812 None:intergenic 30.0%
TGCTTTCCAAATAAACTCTA+AGG + chr4_4:59211794-59211813 None:intergenic 30.0%
!! TCACTGTTTTTCTCATTGAA+TGG - chr4_4:59211845-59211864 Msa0691180:CDS 30.0%
GTTGTCATATCCAATTTGAT+TGG - chr4_4:59212035-59212054 Msa0691180:CDS 30.0%
!!! GATTCACTTTTTGGGAATAT+TGG + chr4_4:59210245-59210264 None:intergenic 30.0%
! AATCAAATGGATTTCCCAAA+GGG + chr4_4:59210342-59210361 None:intergenic 30.0%
! TAATCAAATGGATTTCCCAA+AGG + chr4_4:59210343-59210362 None:intergenic 30.0%
AAAAGGAGAATATGGTTGAA+GGG + chr4_4:59210556-59210575 None:intergenic 30.0%
AAAAAGGAGAATATGGTTGA+AGG + chr4_4:59210557-59210576 None:intergenic 30.0%
GGAATTGAAAAAGGAGAATA+TGG + chr4_4:59210564-59210583 None:intergenic 30.0%
ATCAGAGAAGGAATTGAAAA+AGG + chr4_4:59210573-59210592 None:intergenic 30.0%
! TTCAATTCCTTCTCTGATTT+TGG - chr4_4:59210575-59210594 Msa0691180:intron 30.0%
TTTCATCAAGAGAGAATGAT+AGG + chr4_4:59210697-59210716 None:intergenic 30.0%
AAAACAATCAAGTCTAAGCT+TGG - chr4_4:59210719-59210738 Msa0691180:CDS 30.0%
TAGAAATGACAACATTAGAG+AGG - chr4_4:59210955-59210974 Msa0691180:intron 30.0%
AGAAATGACAACATTAGAGA+GGG - chr4_4:59210956-59210975 Msa0691180:intron 30.0%
AGCACCTATATTAGATAAGA+TGG - chr4_4:59210990-59211009 Msa0691180:intron 30.0%
GACTTGTGAATTCTATAGTT+AGG - chr4_4:59211052-59211071 Msa0691180:intron 30.0%
CTATAGTTAGGAGAGTAAAT+CGG - chr4_4:59211064-59211083 Msa0691180:intron 30.0%
TTTCAGTTGTATCAACCATT+AGG + chr4_4:59211345-59211364 None:intergenic 30.0%
TTGCTTAGTACTAGGAATAT+TGG - chr4_4:59211652-59211671 Msa0691180:intron 30.0%
CTTTCCAAATAAACTCTAAG+GGG + chr4_4:59211792-59211811 None:intergenic 30.0%
GCTTTCCAAATAAACTCTAA+GGG + chr4_4:59211793-59211812 None:intergenic 30.0%
TGCTTTCCAAATAAACTCTA+AGG + chr4_4:59211794-59211813 None:intergenic 30.0%
!! TCACTGTTTTTCTCATTGAA+TGG - chr4_4:59211845-59211864 Msa0691180:CDS 30.0%
GTTGTCATATCCAATTTGAT+TGG - chr4_4:59212035-59212054 Msa0691180:CDS 30.0%
! ATCAAATGGATTTCCCAAAG+GGG + chr4_4:59210341-59210360 None:intergenic 35.0%
TATCCAACAAGTAATGCTGA+AGG - chr4_4:59210365-59210384 Msa0691180:exon 35.0%
TTTGGAGATAACAAGTGTGA+TGG + chr4_4:59210512-59210531 None:intergenic 35.0%
!! ACACTTGTTATCTCCAAAGA+AGG - chr4_4:59210514-59210533 Msa0691180:intron 35.0%
!! CACTTGTTATCTCCAAAGAA+GGG - chr4_4:59210515-59210534 Msa0691180:intron 35.0%
! ATTCCTTCTCTGATTTTGGA+TGG - chr4_4:59210579-59210598 Msa0691180:intron 35.0%
AAGATGACAAGACACCTATA+TGG - chr4_4:59210627-59210646 Msa0691180:CDS 35.0%
! GATAGGTTTGATAGTACACA+AGG + chr4_4:59210680-59210699 None:intergenic 35.0%
TGTTGTACGAGACAAAATGT+TGG - chr4_4:59210843-59210862 Msa0691180:CDS 35.0%
AAGCAAGCGTAGCAAAAATA+AGG - chr4_4:59210891-59210910 Msa0691180:CDS 35.0%
AGATGGTAGAAACTAGACTT+AGG - chr4_4:59211007-59211026 Msa0691180:intron 35.0%
! AAACTAGACTTAGGTGGTTT+TGG - chr4_4:59211016-59211035 Msa0691180:intron 35.0%
TTAGGAGAGTAAATCGGATA+GGG - chr4_4:59211070-59211089 Msa0691180:intron 35.0%
TAGGCTCAATCGATTAGAAT+AGG - chr4_4:59211246-59211265 Msa0691180:intron 35.0%
TCGAAGCCTAAAGAATTTCA+AGG - chr4_4:59211282-59211301 Msa0691180:intron 35.0%
TCCAAGTTCATGCAATTTGT+TGG - chr4_4:59211437-59211456 Msa0691180:intron 35.0%
! CCAAGTTCATGCAATTTGTT+GGG - chr4_4:59211438-59211457 Msa0691180:intron 35.0%
!! CAAGTTCATGCAATTTGTTG+GGG - chr4_4:59211439-59211458 Msa0691180:intron 35.0%
!! ATTACTGGGGTCATTTTCTA+TGG - chr4_4:59211565-59211584 Msa0691180:intron 35.0%
!! GGGTCATTTTCTATGGAATT+AGG - chr4_4:59211572-59211591 Msa0691180:intron 35.0%
TAGGCTATACATGCAAGAAA+TGG - chr4_4:59211591-59211610 Msa0691180:intron 35.0%
CATGCAAGAAATGGACAAAA+AGG - chr4_4:59211600-59211619 Msa0691180:intron 35.0%
CTAACCCCTTAGAGTTTATT+TGG - chr4_4:59211785-59211804 Msa0691180:intron 35.0%
CATTGAATGGCTCTTAGATA+TGG - chr4_4:59211858-59211877 Msa0691180:CDS 35.0%
GATATGGAGCTGAAATTAAG+AGG - chr4_4:59211874-59211893 Msa0691180:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG - chr4_4:59211886-59211905 Msa0691180:CDS 35.0%
TTGCTATAAACATGTGTTGC+AGG - chr4_4:59211971-59211990 Msa0691180:CDS 35.0%
GCAGTTGCTAAACATATCTA+TGG - chr4_4:59211993-59212012 Msa0691180:CDS 35.0%
GACAACACTTGAATTTCTCA+AGG + chr4_4:59212021-59212040 None:intergenic 35.0%
TTGTACTTTACAATGACAGG+TGG - chr4_4:59212101-59212120 Msa0691180:CDS 35.0%
CAAACTAGAGAGTTAAGTGA+TGG + chr4_4:59212138-59212157 None:intergenic 35.0%
! ATCAAATGGATTTCCCAAAG+GGG + chr4_4:59210341-59210360 None:intergenic 35.0%
TATCCAACAAGTAATGCTGA+AGG - chr4_4:59210365-59210384 Msa0691180:exon 35.0%
TTTGGAGATAACAAGTGTGA+TGG + chr4_4:59210512-59210531 None:intergenic 35.0%
!! ACACTTGTTATCTCCAAAGA+AGG - chr4_4:59210514-59210533 Msa0691180:intron 35.0%
!! CACTTGTTATCTCCAAAGAA+GGG - chr4_4:59210515-59210534 Msa0691180:intron 35.0%
! ATTCCTTCTCTGATTTTGGA+TGG - chr4_4:59210579-59210598 Msa0691180:intron 35.0%
AAGATGACAAGACACCTATA+TGG - chr4_4:59210627-59210646 Msa0691180:CDS 35.0%
! GATAGGTTTGATAGTACACA+AGG + chr4_4:59210680-59210699 None:intergenic 35.0%
TGTTGTACGAGACAAAATGT+TGG - chr4_4:59210843-59210862 Msa0691180:CDS 35.0%
AAGCAAGCGTAGCAAAAATA+AGG - chr4_4:59210891-59210910 Msa0691180:CDS 35.0%
AGATGGTAGAAACTAGACTT+AGG - chr4_4:59211007-59211026 Msa0691180:intron 35.0%
! AAACTAGACTTAGGTGGTTT+TGG - chr4_4:59211016-59211035 Msa0691180:intron 35.0%
TTAGGAGAGTAAATCGGATA+GGG - chr4_4:59211070-59211089 Msa0691180:intron 35.0%
TAGGCTCAATCGATTAGAAT+AGG - chr4_4:59211246-59211265 Msa0691180:intron 35.0%
TCGAAGCCTAAAGAATTTCA+AGG - chr4_4:59211282-59211301 Msa0691180:intron 35.0%
TCCAAGTTCATGCAATTTGT+TGG - chr4_4:59211437-59211456 Msa0691180:intron 35.0%
! CCAAGTTCATGCAATTTGTT+GGG - chr4_4:59211438-59211457 Msa0691180:intron 35.0%
!! CAAGTTCATGCAATTTGTTG+GGG - chr4_4:59211439-59211458 Msa0691180:intron 35.0%
!! ATTACTGGGGTCATTTTCTA+TGG - chr4_4:59211565-59211584 Msa0691180:intron 35.0%
!! GGGTCATTTTCTATGGAATT+AGG - chr4_4:59211572-59211591 Msa0691180:intron 35.0%
TAGGCTATACATGCAAGAAA+TGG - chr4_4:59211591-59211610 Msa0691180:intron 35.0%
CATGCAAGAAATGGACAAAA+AGG - chr4_4:59211600-59211619 Msa0691180:intron 35.0%
CTAACCCCTTAGAGTTTATT+TGG - chr4_4:59211785-59211804 Msa0691180:intron 35.0%
CATTGAATGGCTCTTAGATA+TGG - chr4_4:59211858-59211877 Msa0691180:CDS 35.0%
GATATGGAGCTGAAATTAAG+AGG - chr4_4:59211874-59211893 Msa0691180:CDS 35.0%
AAATTAAGAGGACATGAGGT+GGG - chr4_4:59211886-59211905 Msa0691180:CDS 35.0%
TTGCTATAAACATGTGTTGC+AGG - chr4_4:59211971-59211990 Msa0691180:CDS 35.0%
GCAGTTGCTAAACATATCTA+TGG - chr4_4:59211993-59212012 Msa0691180:CDS 35.0%
GACAACACTTGAATTTCTCA+AGG + chr4_4:59212021-59212040 None:intergenic 35.0%
TTGTACTTTACAATGACAGG+TGG - chr4_4:59212101-59212120 Msa0691180:CDS 35.0%
CAAACTAGAGAGTTAAGTGA+TGG + chr4_4:59212138-59212157 None:intergenic 35.0%
GTTCCTTCAGCATTACTTGT+TGG + chr4_4:59210371-59210390 None:intergenic 40.0%
TTCAAACTTCACCATGCACT+TGG - chr4_4:59210398-59210417 Msa0691180:CDS 40.0%
GGAAAAGATAGAGGAAGAGA+AGG + chr4_4:59210479-59210498 None:intergenic 40.0%
TTGCGTGAAGGAAAAGATAG+AGG + chr4_4:59210488-59210507 None:intergenic 40.0%
CACTTGAAAAAGCCCTTCTT+TGG + chr4_4:59210530-59210549 None:intergenic 40.0%
!!! CAAAGAAGGGCTTTTTCAAG+TGG - chr4_4:59210528-59210547 Msa0691180:intron 40.0%
GACAAGACACCTATATGGAA+TGG - chr4_4:59210632-59210651 Msa0691180:CDS 40.0%
AATCAAGTCTAAGCTTGGAG+TGG - chr4_4:59210724-59210743 Msa0691180:CDS 40.0%
GATCCTCTATCGATGTAGTA+TGG - chr4_4:59210784-59210803 Msa0691180:CDS 40.0%
TCACCATACTACATCGATAG+AGG + chr4_4:59210790-59210809 None:intergenic 40.0%
GTACGAGACAAAATGTTGGA+CGG - chr4_4:59210847-59210866 Msa0691180:CDS 40.0%
CGCTTGCTTTATGTTTGTGT+TGG + chr4_4:59210880-59210899 None:intergenic 40.0%
AGGATGTTGTGTTGAATGTG+TGG - chr4_4:59210911-59210930 Msa0691180:CDS 40.0%
AACATTAGAGAGGGAGAGTT+GGG - chr4_4:59210965-59210984 Msa0691180:intron 40.0%
TGGTAGAAACTAGACTTAGG+TGG - chr4_4:59211010-59211029 Msa0691180:intron 40.0%
GTTAGGAGAGTAAATCGGAT+AGG - chr4_4:59211069-59211088 Msa0691180:intron 40.0%
TAGGAGAGTAAATCGGATAG+GGG - chr4_4:59211071-59211090 Msa0691180:intron 40.0%
! GGATAAGGTTGGTTGTTGTT+GGG - chr4_4:59211220-59211239 Msa0691180:intron 40.0%
ATCAACCATTAGGCTTAGAG+AGG + chr4_4:59211335-59211354 None:intergenic 40.0%
GCTGCAAAATCATATTGCAG+CGG - chr4_4:59211407-59211426 Msa0691180:intron 40.0%
AAATCATATTGCAGCGGTAG+AGG - chr4_4:59211413-59211432 Msa0691180:intron 40.0%
CCCAACAAATTGCATGAACT+TGG + chr4_4:59211441-59211460 None:intergenic 40.0%
GCAAGAACATCAAATTCCAC+AGG - chr4_4:59211622-59211641 Msa0691180:intron 40.0%
AACATCAAATTCCACAGGAC+TGG - chr4_4:59211627-59211646 Msa0691180:intron 40.0%
! AGGCTGATTCAAAATCTCCT+TGG - chr4_4:59211704-59211723 Msa0691180:intron 40.0%
! GGCTGATTCAAAATCTCCTT+GGG - chr4_4:59211705-59211724 Msa0691180:intron 40.0%
! GCTGATTCAAAATCTCCTTG+GGG - chr4_4:59211706-59211725 Msa0691180:intron 40.0%
CTGATTCAAAATCTCCTTGG+GGG - chr4_4:59211707-59211726 Msa0691180:intron 40.0%
AAAGAAATATGGTTCCCCCA+AGG + chr4_4:59211724-59211743 None:intergenic 40.0%
ATCAATCCCCAAGTTAAGCA+AGG - chr4_4:59211753-59211772 Msa0691180:intron 40.0%
GCTGAAATTAAGAGGACATG+AGG - chr4_4:59211882-59211901 Msa0691180:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG - chr4_4:59211885-59211904 Msa0691180:CDS 40.0%
GTAAAGTACAAGCCTTTCAC+AGG + chr4_4:59212092-59212111 None:intergenic 40.0%
GGCTTGTACTTTACAATGAC+AGG - chr4_4:59212098-59212117 Msa0691180:CDS 40.0%
AGTTAAGTGATGGTTACCTC+AGG + chr4_4:59212128-59212147 None:intergenic 40.0%
GTTCCTTCAGCATTACTTGT+TGG + chr4_4:59210371-59210390 None:intergenic 40.0%
TTCAAACTTCACCATGCACT+TGG - chr4_4:59210398-59210417 Msa0691180:CDS 40.0%
GGAAAAGATAGAGGAAGAGA+AGG + chr4_4:59210479-59210498 None:intergenic 40.0%
TTGCGTGAAGGAAAAGATAG+AGG + chr4_4:59210488-59210507 None:intergenic 40.0%
CACTTGAAAAAGCCCTTCTT+TGG + chr4_4:59210530-59210549 None:intergenic 40.0%
!!! CAAAGAAGGGCTTTTTCAAG+TGG - chr4_4:59210528-59210547 Msa0691180:intron 40.0%
GACAAGACACCTATATGGAA+TGG - chr4_4:59210632-59210651 Msa0691180:CDS 40.0%
AATCAAGTCTAAGCTTGGAG+TGG - chr4_4:59210724-59210743 Msa0691180:CDS 40.0%
GATCCTCTATCGATGTAGTA+TGG - chr4_4:59210784-59210803 Msa0691180:CDS 40.0%
TCACCATACTACATCGATAG+AGG + chr4_4:59210790-59210809 None:intergenic 40.0%
GTACGAGACAAAATGTTGGA+CGG - chr4_4:59210847-59210866 Msa0691180:CDS 40.0%
CGCTTGCTTTATGTTTGTGT+TGG + chr4_4:59210880-59210899 None:intergenic 40.0%
AGGATGTTGTGTTGAATGTG+TGG - chr4_4:59210911-59210930 Msa0691180:CDS 40.0%
AACATTAGAGAGGGAGAGTT+GGG - chr4_4:59210965-59210984 Msa0691180:intron 40.0%
TGGTAGAAACTAGACTTAGG+TGG - chr4_4:59211010-59211029 Msa0691180:intron 40.0%
GTTAGGAGAGTAAATCGGAT+AGG - chr4_4:59211069-59211088 Msa0691180:intron 40.0%
TAGGAGAGTAAATCGGATAG+GGG - chr4_4:59211071-59211090 Msa0691180:intron 40.0%
! GGATAAGGTTGGTTGTTGTT+GGG - chr4_4:59211220-59211239 Msa0691180:intron 40.0%
ATCAACCATTAGGCTTAGAG+AGG + chr4_4:59211335-59211354 None:intergenic 40.0%
GCTGCAAAATCATATTGCAG+CGG - chr4_4:59211407-59211426 Msa0691180:intron 40.0%
AAATCATATTGCAGCGGTAG+AGG - chr4_4:59211413-59211432 Msa0691180:intron 40.0%
CCCAACAAATTGCATGAACT+TGG + chr4_4:59211441-59211460 None:intergenic 40.0%
GCAAGAACATCAAATTCCAC+AGG - chr4_4:59211622-59211641 Msa0691180:intron 40.0%
AACATCAAATTCCACAGGAC+TGG - chr4_4:59211627-59211646 Msa0691180:intron 40.0%
! AGGCTGATTCAAAATCTCCT+TGG - chr4_4:59211704-59211723 Msa0691180:intron 40.0%
! GGCTGATTCAAAATCTCCTT+GGG - chr4_4:59211705-59211724 Msa0691180:intron 40.0%
! GCTGATTCAAAATCTCCTTG+GGG - chr4_4:59211706-59211725 Msa0691180:intron 40.0%
CTGATTCAAAATCTCCTTGG+GGG - chr4_4:59211707-59211726 Msa0691180:intron 40.0%
AAAGAAATATGGTTCCCCCA+AGG + chr4_4:59211724-59211743 None:intergenic 40.0%
ATCAATCCCCAAGTTAAGCA+AGG - chr4_4:59211753-59211772 Msa0691180:intron 40.0%
GCTGAAATTAAGAGGACATG+AGG - chr4_4:59211882-59211901 Msa0691180:CDS 40.0%
GAAATTAAGAGGACATGAGG+TGG - chr4_4:59211885-59211904 Msa0691180:CDS 40.0%
GTAAAGTACAAGCCTTTCAC+AGG + chr4_4:59212092-59212111 None:intergenic 40.0%
GGCTTGTACTTTACAATGAC+AGG - chr4_4:59212098-59212117 Msa0691180:CDS 40.0%
AGTTAAGTGATGGTTACCTC+AGG + chr4_4:59212128-59212147 None:intergenic 40.0%
GGAACGTGCATATGATCTTC+AGG + chr4_4:59210224-59210243 None:intergenic 45.0%
ACCTCAAGACAAACCCCTTT+GGG - chr4_4:59210325-59210344 Msa0691180:three_prime_UTR 45.0%
AGTAACCATCACCAAGTGCA+TGG + chr4_4:59210412-59210431 None:intergenic 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG - chr4_4:59210418-59210437 Msa0691180:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG - chr4_4:59210419-59210438 Msa0691180:CDS 45.0%
! AAGTGTGATGGTTTGCGTGA+AGG + chr4_4:59210500-59210519 None:intergenic 45.0%
GCTCCATCCAAAATCAGAGA+AGG + chr4_4:59210585-59210604 None:intergenic 45.0%
CAACATTAGAGAGGGAGAGT+TGG - chr4_4:59210964-59210983 Msa0691180:intron 45.0%
ACATTAGAGAGGGAGAGTTG+GGG - chr4_4:59210966-59210985 Msa0691180:intron 45.0%
ATGTAACCAACCCCACTTAG+TGG - chr4_4:59211198-59211217 Msa0691180:intron 45.0%
TGTAACCAACCCCACTTAGT+GGG - chr4_4:59211199-59211218 Msa0691180:intron 45.0%
CAACCTTATCCCACTAAGTG+GGG + chr4_4:59211211-59211230 None:intergenic 45.0%
CCAACCTTATCCCACTAAGT+GGG + chr4_4:59211212-59211231 None:intergenic 45.0%
ACCAACCTTATCCCACTAAG+TGG + chr4_4:59211213-59211232 None:intergenic 45.0%
! GGGATAAGGTTGGTTGTTGT+TGG - chr4_4:59211219-59211238 Msa0691180:intron 45.0%
! GTTGGTTGTTGTTGGGAACT+AGG - chr4_4:59211227-59211246 Msa0691180:intron 45.0%
!! GACTGGTGTTGCTTAGTACT+AGG - chr4_4:59211644-59211663 Msa0691180:intron 45.0%
AGACAGGCCTTGCTTAACTT+GGG + chr4_4:59211763-59211782 None:intergenic 45.0%
TAGACAGGCCTTGCTTAACT+TGG + chr4_4:59211764-59211783 None:intergenic 45.0%
! CTCTAAGGGGTTAGATAGAC+AGG + chr4_4:59211779-59211798 None:intergenic 45.0%
ATCCAATTTGATTGGGCCAG+TGG - chr4_4:59212043-59212062 Msa0691180:CDS 45.0%
TTCCACTGGCCCAATCAAAT+TGG + chr4_4:59212048-59212067 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG - chr4_4:59212077-59212096 Msa0691180:CDS 45.0%
AGTACAAGCCTTTCACAGGA+TGG + chr4_4:59212088-59212107 None:intergenic 45.0%
GGAACGTGCATATGATCTTC+AGG + chr4_4:59210224-59210243 None:intergenic 45.0%
ACCTCAAGACAAACCCCTTT+GGG - chr4_4:59210325-59210344 Msa0691180:three_prime_UTR 45.0%
AGTAACCATCACCAAGTGCA+TGG + chr4_4:59210412-59210431 None:intergenic 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG - chr4_4:59210418-59210437 Msa0691180:CDS 45.0%
! GGTGATGGTTACTCTCTCAT+GGG - chr4_4:59210419-59210438 Msa0691180:CDS 45.0%
! AAGTGTGATGGTTTGCGTGA+AGG + chr4_4:59210500-59210519 None:intergenic 45.0%
GCTCCATCCAAAATCAGAGA+AGG + chr4_4:59210585-59210604 None:intergenic 45.0%
CAACATTAGAGAGGGAGAGT+TGG - chr4_4:59210964-59210983 Msa0691180:intron 45.0%
ACATTAGAGAGGGAGAGTTG+GGG - chr4_4:59210966-59210985 Msa0691180:intron 45.0%
ATGTAACCAACCCCACTTAG+TGG - chr4_4:59211198-59211217 Msa0691180:intron 45.0%
TGTAACCAACCCCACTTAGT+GGG - chr4_4:59211199-59211218 Msa0691180:intron 45.0%
CAACCTTATCCCACTAAGTG+GGG + chr4_4:59211211-59211230 None:intergenic 45.0%
CCAACCTTATCCCACTAAGT+GGG + chr4_4:59211212-59211231 None:intergenic 45.0%
ACCAACCTTATCCCACTAAG+TGG + chr4_4:59211213-59211232 None:intergenic 45.0%
! GGGATAAGGTTGGTTGTTGT+TGG - chr4_4:59211219-59211238 Msa0691180:intron 45.0%
! GTTGGTTGTTGTTGGGAACT+AGG - chr4_4:59211227-59211246 Msa0691180:intron 45.0%
!! GACTGGTGTTGCTTAGTACT+AGG - chr4_4:59211644-59211663 Msa0691180:intron 45.0%
AGACAGGCCTTGCTTAACTT+GGG + chr4_4:59211763-59211782 None:intergenic 45.0%
TAGACAGGCCTTGCTTAACT+TGG + chr4_4:59211764-59211783 None:intergenic 45.0%
! CTCTAAGGGGTTAGATAGAC+AGG + chr4_4:59211779-59211798 None:intergenic 45.0%
ATCCAATTTGATTGGGCCAG+TGG - chr4_4:59212043-59212062 Msa0691180:CDS 45.0%
TTCCACTGGCCCAATCAAAT+TGG + chr4_4:59212048-59212067 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG - chr4_4:59212077-59212096 Msa0691180:CDS 45.0%
AGTACAAGCCTTTCACAGGA+TGG + chr4_4:59212088-59212107 None:intergenic 45.0%
CACCTCAAGACAAACCCCTT+TGG - chr4_4:59210324-59210343 Msa0691180:three_prime_UTR 50.0%
TCCCAAAGGGGTTTGTCTTG+AGG + chr4_4:59210329-59210348 None:intergenic 50.0%
! CTTCACCATGCACTTGGTGA+TGG - chr4_4:59210404-59210423 Msa0691180:CDS 50.0%
GACACCTATATGGAATGGCG+AGG - chr4_4:59210637-59210656 Msa0691180:CDS 50.0%
CCTTCCTCGCCATTCCATAT+AGG + chr4_4:59210644-59210663 None:intergenic 50.0%
CCTATATGGAATGGCGAGGA+AGG - chr4_4:59210641-59210660 Msa0691180:CDS 50.0%
CTTATCCCACTAAGTGGGGT+TGG + chr4_4:59211207-59211226 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG - chr4_4:59211205-59211224 Msa0691180:intron 50.0%
CCCACTTAGTGGGATAAGGT+TGG - chr4_4:59211209-59211228 Msa0691180:intron 50.0%
!!! AGAGAGGACTGGTTTTCGAG+CGG + chr4_4:59211319-59211338 None:intergenic 50.0%
CCATTAGGCTTAGAGAGGAC+TGG + chr4_4:59211330-59211349 None:intergenic 50.0%
CCAGTCCTCTCTAAGCCTAA+TGG - chr4_4:59211327-59211346 Msa0691180:intron 50.0%
ACTAAGCAACACCAGTCCTG+TGG + chr4_4:59211641-59211660 None:intergenic 50.0%
! GACAGGCCTTGCTTAACTTG+GGG + chr4_4:59211762-59211781 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG + chr4_4:59212071-59212090 None:intergenic 50.0%
TACAATGACAGGTGGACCTG+AGG - chr4_4:59212109-59212128 Msa0691180:CDS 50.0%
CACCTCAAGACAAACCCCTT+TGG - chr4_4:59210324-59210343 Msa0691180:three_prime_UTR 50.0%
TCCCAAAGGGGTTTGTCTTG+AGG + chr4_4:59210329-59210348 None:intergenic 50.0%
! CTTCACCATGCACTTGGTGA+TGG - chr4_4:59210404-59210423 Msa0691180:CDS 50.0%
GACACCTATATGGAATGGCG+AGG - chr4_4:59210637-59210656 Msa0691180:CDS 50.0%
CCTTCCTCGCCATTCCATAT+AGG + chr4_4:59210644-59210663 None:intergenic 50.0%
CCTATATGGAATGGCGAGGA+AGG - chr4_4:59210641-59210660 Msa0691180:CDS 50.0%
CTTATCCCACTAAGTGGGGT+TGG + chr4_4:59211207-59211226 None:intergenic 50.0%
CAACCCCACTTAGTGGGATA+AGG - chr4_4:59211205-59211224 Msa0691180:intron 50.0%
CCCACTTAGTGGGATAAGGT+TGG - chr4_4:59211209-59211228 Msa0691180:intron 50.0%
!!! AGAGAGGACTGGTTTTCGAG+CGG + chr4_4:59211319-59211338 None:intergenic 50.0%
CCATTAGGCTTAGAGAGGAC+TGG + chr4_4:59211330-59211349 None:intergenic 50.0%
CCAGTCCTCTCTAAGCCTAA+TGG - chr4_4:59211327-59211346 Msa0691180:intron 50.0%
ACTAAGCAACACCAGTCCTG+TGG + chr4_4:59211641-59211660 None:intergenic 50.0%
! GACAGGCCTTGCTTAACTTG+GGG + chr4_4:59211762-59211781 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG + chr4_4:59212071-59212090 None:intergenic 50.0%
TACAATGACAGGTGGACCTG+AGG - chr4_4:59212109-59212128 Msa0691180:CDS 50.0%
GATTGGGCCAGTGGAACCTA+TGG - chr4_4:59212052-59212071 Msa0691180:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG - chr4_4:59212058-59212077 Msa0691180:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG + chr4_4:59212062-59212081 None:intergenic 55.0%
GATTGGGCCAGTGGAACCTA+TGG - chr4_4:59212052-59212071 Msa0691180:CDS 55.0%
GCCAGTGGAACCTATGGCTT+TGG - chr4_4:59212058-59212077 Msa0691180:CDS 55.0%
GCCAAAGCCATAGGTTCCAC+TGG + chr4_4:59212062-59212081 None:intergenic 55.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59210194 59212327 59210194 ID=Msa0691180;Name=Msa0691180
chr4_4 mRNA 59210194 59212327 59210194 ID=Msa0691180-mRNA-1;Parent=Msa0691180;Name=Msa0691180-mRNA-1;_AED=0.44;_eAED=0.44;_QI=0|0.5|0.66|1|1|1|3|182|331
chr4_4 exon 59210194 59210528 59210194 ID=Msa0691180-mRNA-1:exon:16083;Parent=Msa0691180-mRNA-1
chr4_4 exon 59210618 59210971 59210618 ID=Msa0691180-mRNA-1:exon:16082;Parent=Msa0691180-mRNA-1
chr4_4 exon 59211839 59212327 59211839 ID=Msa0691180-mRNA-1:exon:16081;Parent=Msa0691180-mRNA-1
chr4_4 CDS 59211839 59212327 59211839 ID=Msa0691180-mRNA-1:cds;Parent=Msa0691180-mRNA-1
chr4_4 CDS 59210618 59210971 59210618 ID=Msa0691180-mRNA-1:cds;Parent=Msa0691180-mRNA-1
chr4_4 CDS 59210376 59210528 59210376 ID=Msa0691180-mRNA-1:cds;Parent=Msa0691180-mRNA-1
chr4_4 three_prime_UTR 59210194 59210375 59210194 ID=Msa0691180-mRNA-1:three_prime_utr;Parent=Msa0691180-mRNA-1
Gene Sequence

>Msa0691180

ATGAAATGGAAAAAGGTAGAGGTGAAGCCTGAAGATCATATGCACGTTCCAATATTCCCAAAAAGTGAATCAATTGAATTGTATGATCAATATTTTGATGATTATGTGTCAAAGATTATGATGGAAAGAACACCTCAAGACAAACCCCTTTGGGAAATCCATTTGATTAAATATCCAACAAGTAATGCTGAAGGAACTTTGATATTCAAACTTCACCATGCACTTGGTGATGGTTACTCTCTCATGGGCGCTCTTCTATCTTGTCTACAAAGAGCTGATGATCCTTCTCTTCCTCTATCTTTTCCTTCACGCAAACCATCACACTTGTTATCTCCAAAGAAGGGCTTTTTCAAGTGGTTCCCTTCAACCATATTCTCCTTTTTCAATTCCTTCTCTGATTTTGGATGGAGCATAGCCAAAAGCTCAATGATTAAAGATGACAAGACACCTATATGGAATGGCGAGGAAGGAGTTGAGTCTCAGCCTTGTACAATAAATGATGTGATTACTGGGGTCATTTTCTATGGAATTAGGCTATACATGCAAGAAATGGACAAAAAGGCAAGAACATCAAATTCCACAGGACTGGTGTTGCTTAGTACTAGGAATATTGGAAGTTACCAATCAATTCAAGAAATGACAAAGGCTGATTCAAAATCTCCTTGGGGGAACCATATTTCTTTCTTACATGTATCAATCCCCAAGTTAAGCAAGGCCTGTCTATCTAACCCCTTAGAGTTTATTTGGAAAGCACAAAAAATAATCAAGAGGAAGAGAAATACTTTCACTGTTTTTCTCATTGAATGGCTCTTAGATATGGAGCTGAAATTAAGAGGACATGAGGCAGTTGCTAAACATATCTATGGTACCTTGAGAAATTCAAGTGTTGTCATATCCAATTTGATTGGGCCAGTGGAACCTATGGCTTTGGCAAACCATCCTGTGAAAGGCTTGTACTTTACAATGACAGGTGGACCTGAGGTAACCATCACTTAA

Protein sequence

>Msa0691180

MKWKKVEVKPEDHMHVPIFPKSESIELYDQYFDDYVSKIMMERTPQDKPLWEIHLIKYPTSNAEGTLIFKLHHALGDGYSLMGALLSCLQRADDPSLPLSFPSRKPSHLLSPKKGFFKWFPSTIFSFFNSFSDFGWSIAKSSMIKDDKTPIWNGEEGVESQPCTINDVITGVIFYGIRLYMQEMDKKARTSNSTGLVLLSTRNIGSYQSIQEMTKADSKSPWGNHISFLHVSIPKLSKACLSNPLEFIWKAQKIIKRKRNTFTVFLIEWLLDMELKLRGHEAVAKHIYGTLRNSSVVISNLIGPVEPMALANHPVKGLYFTMTGGPEVTIT*