AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0741710

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741710 MtrunA17_Chr5g0443091 98.488 1058 15 1 1 1057 1 1058 0.0 2155
Msa0741710 MtrunA17_Chr3g0096241 81.096 1058 186 7 1 1056 1 1046 0.0 1764
Msa0741710 MtrunA17_Chr4g0064501 56.308 1078 412 20 1 1048 1 1049 0.0 1145
Msa0741710 MtrunA17_Chr3g0109841 27.437 554 319 21 171 693 286 787 3.51e-41 164
Msa0741710 MtrunA17_Chr1g0195241 26.015 542 332 19 171 688 264 760 2.36e-37 151
Msa0741710 MtrunA17_Chr6g0481131 26.437 522 320 19 171 677 285 757 2.50e-37 152
Msa0741710 MtrunA17_Chr6g0481171 26.245 522 321 19 171 677 157 629 7.76e-37 149
Msa0741710 MtrunA17_Chr2g0301621 25.898 529 320 20 171 672 277 760 1.61e-36 149
Msa0741710 MtrunA17_Chr5g0433761 25.725 517 319 18 171 663 283 758 1.59e-35 145
Msa0741710 MtrunA17_Chr4g0070011 25.331 529 323 20 171 672 279 762 1.60e-34 142
Msa0741710 MtrunA17_Chr7g0269581 25.145 517 322 17 171 663 279 754 2.08e-34 142
Msa0741710 MtrunA17_Chr6g0481261 43.529 85 42 2 569 653 24 102 4.02e-14 69.3
Msa0741710 MtrunA17_Chr6g0481241 52.459 61 29 0 569 629 24 84 1.60e-12 68.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0741710 AT1G04920.1 73.196 1067 266 11 1 1054 1 1060 0.0 1602
Msa0741710 AT4G10120.2 57.049 1071 391 13 1 1039 1 1034 0.0 1188
Msa0741710 AT4G10120.3 57.049 1071 391 13 1 1039 1 1034 0.0 1188
Msa0741710 AT4G10120.1 57.049 1071 391 13 1 1039 1 1034 0.0 1188
Msa0741710 AT5G20280.1 56.808 1065 419 18 1 1051 1 1038 0.0 1172
Msa0741710 AT5G11110.1 55.649 1071 430 16 1 1054 1 1043 0.0 1143
Msa0741710 AT4G10120.4 58.705 896 326 10 150 1038 1 859 0.0 1038
Msa0741710 AT4G10120.5 59.033 869 313 9 176 1038 1 832 0.0 1014
Msa0741710 AT1G73370.2 26.769 523 306 17 171 663 241 716 1.33e-38 156
Msa0741710 AT5G49190.3 25.714 525 327 16 171 672 212 696 1.36e-38 155
Msa0741710 AT5G49190.2 25.714 525 327 16 171 672 268 752 1.50e-38 155
Msa0741710 AT1G73370.3 26.527 524 306 17 171 663 285 760 1.50e-38 156
Msa0741710 AT1G73370.1 26.527 524 306 17 171 663 285 760 1.50e-38 156
Msa0741710 AT5G49190.1 25.714 525 327 16 171 672 278 762 1.83e-38 155
Msa0741710 AT4G02280.1 26.679 521 327 19 171 672 281 765 1.36e-35 146
Msa0741710 AT5G20830.3 26.476 525 322 20 171 672 281 764 2.77e-35 145
Msa0741710 AT5G20830.2 26.476 525 322 20 171 672 281 764 2.77e-35 145
Msa0741710 AT5G20830.1 26.476 525 322 20 171 672 281 764 2.77e-35 145
Msa0741710 AT3G43190.2 25.788 539 308 20 171 672 281 764 2.82e-35 145
Msa0741710 AT3G43190.1 25.788 539 308 20 171 672 281 764 2.82e-35 145
Msa0741710 AT5G37180.3 25.912 521 313 20 171 663 29 504 7.68e-35 142
Msa0741710 AT5G37180.2 25.912 521 313 20 171 663 87 562 1.30e-34 142
Msa0741710 AT5G37180.1 25.414 543 328 21 171 685 275 768 3.39e-34 142

Find 265 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAAGAAAGTTTGTGATTAA+TGG 0.148259 5_1:+61405387 Msa0741710:exon
CATCTCTGTTTCCCATTATA+AGG 0.149024 5_1:-61408399 None:intergenic
CCTCAAACTGCGAGAGTTTC+AGG 0.151464 5_1:+61409520 Msa0741710:CDS
AGAACATGTGTTGGCGTATT+TGG 0.175840 5_1:+61405650 Msa0741710:CDS
GACAGTGCTGCTCTTCTTTC+GGG 0.187244 5_1:+61407133 Msa0741710:CDS
TTCATTCACTTGAACATTTC+CGG 0.194078 5_1:-61409596 None:intergenic
CAAAAGCTTTACCTTCAATT+TGG 0.218480 5_1:+61407816 Msa0741710:CDS
ACAACTCTATTAAAGGCTTT+TGG 0.226121 5_1:+61408251 Msa0741710:CDS
TCAGATTGTCTATGATGTTT+AGG 0.234949 5_1:-61408514 None:intergenic
AGAGTTGTTATGTTCTTCTT+TGG 0.246298 5_1:-61408236 None:intergenic
TGCATTCTTACCGCCATTCT+AGG 0.250617 5_1:-61407445 None:intergenic
GAGAGATCTCCGTCGACTTC+AGG 0.253821 5_1:-61407761 None:intergenic
CAAATTGAAGGTAAAGCTTT+TGG 0.257375 5_1:-61407815 None:intergenic
TTCTAAACAGACCCTTATAA+TGG 0.264832 5_1:+61408387 Msa0741710:intron
GATTACGAGGAAATGATTTC+TGG 0.266581 5_1:+61410377 Msa0741710:CDS
GAACATAACAACTCTATTAA+AGG 0.269752 5_1:+61408244 Msa0741710:CDS
ATTAGTCTCTTCACCATTAG+AGG 0.273238 5_1:-61409776 None:intergenic
TGACAGTGCTGCTCTTCTTT+CGG 0.280821 5_1:+61407132 Msa0741710:CDS
TTGAAGCAACTTTCAAAATC+TGG 0.289138 5_1:+61410557 Msa0741710:CDS
CAATATCAGGAGATGATATT+TGG 0.291054 5_1:-61406829 None:intergenic
CAGATTGTCTATGATGTTTA+GGG 0.292808 5_1:-61408513 None:intergenic
ATCTCGAGAAAGAACTTCTT+TGG 0.293144 5_1:+61406978 Msa0741710:CDS
CAAACAAATATCCTCTATTA+AGG 0.293621 5_1:+61409386 Msa0741710:CDS
TCACTTAGGCTTTCAATTGA+TGG 0.311625 5_1:+61409247 Msa0741710:CDS
CATGAAAGGAGTTGTGTCTA+AGG 0.320713 5_1:+61410418 Msa0741710:CDS
TCATCTCTTTGGTAGCTTCC+TGG 0.321337 5_1:-61410464 None:intergenic
GTTATGTTCTTCTTTGGATC+TGG 0.322685 5_1:-61408230 None:intergenic
ATCTCAATCAACTTCTTATC+AGG 0.328143 5_1:-61409463 None:intergenic
GAGAAAAGGGAGATGGCATT+GGG 0.330516 5_1:+61406118 Msa0741710:CDS
TTCAATTTCCATTCTATACT+TGG 0.339555 5_1:-61410651 None:intergenic
ATTGACAAATATGACCTATA+TGG 0.346454 5_1:+61408478 Msa0741710:CDS
AACTTTATATTATCCTCTTA+AGG 0.347172 5_1:+61406229 Msa0741710:CDS
GCAAACATGTATGTCATTCT+TGG 0.348150 5_1:+61410338 Msa0741710:CDS
TTTCATAAATCCTGCTTTAG+TGG 0.348644 5_1:+61408664 Msa0741710:CDS
GTCTTTCAATGATTCACTTA+AGG 0.350306 5_1:+61409210 Msa0741710:CDS
TTGGTACAACATCATCTCTT+TGG 0.351129 5_1:-61410475 None:intergenic
TGATTCACTTAAGGATGTTC+AGG 0.352685 5_1:+61409219 Msa0741710:CDS
CCTGCTTTAGTGGAACCTTT+TGG 0.355668 5_1:+61408674 Msa0741710:CDS
AATATGGTCTGATGACAAAA+AGG 0.362303 5_1:+61406200 Msa0741710:CDS
GTGGACCGGTTGACATTAAT+CGG 0.362697 5_1:+61408839 Msa0741710:CDS
GACATAGAAGATATGTCATC+TGG 0.366127 5_1:+61408421 Msa0741710:CDS
CACATTCAAGAATTTGTAGA+TGG 0.366199 5_1:+61407004 Msa0741710:CDS
GCTGGTAATGAGTGGATTAA+TGG 0.367627 5_1:+61405409 Msa0741710:CDS
GGAGAAAAGGGAGATGGCAT+TGG 0.367916 5_1:+61406117 Msa0741710:CDS
ATGCTTCTAGCCAGGAAATA+TGG 0.370871 5_1:+61406184 Msa0741710:CDS
CCATAGCTCCAATCAATATC+AGG 0.371116 5_1:-61406842 None:intergenic
CTCAACATGTCAAAAGTATT+GGG 0.373778 5_1:+61407043 Msa0741710:CDS
ATCTCTGTTTCCCATTATAA+GGG 0.375269 5_1:-61408398 None:intergenic
GGAGATCTCTCACAGCTTAC+TGG 0.381308 5_1:+61407773 Msa0741710:CDS
TAAGAATAATATACCTTAAG+AGG 0.382181 5_1:-61406242 None:intergenic
CTTTGGATCTGGCCTTGATA+AGG 0.382917 5_1:-61408219 None:intergenic
TGTCATCAGACCATATTTCC+TGG 0.392032 5_1:-61406194 None:intergenic
TCTTCATCGTACATGGCTTA+AGG 0.392250 5_1:+61405585 Msa0741710:CDS
TATCATCTCCTGATATTGAT+TGG 0.395461 5_1:+61406834 Msa0741710:CDS
ACAAGAAATTGATGAACAAT+GGG 0.399161 5_1:+61407336 Msa0741710:CDS
CTTGATAAGGCTAATATCAT+AGG 0.399864 5_1:-61408206 None:intergenic
TCTAAACAGACCCTTATAAT+GGG 0.402227 5_1:+61408388 Msa0741710:intron
TCTCAACATGTCAAAAGTAT+TGG 0.402734 5_1:+61407042 Msa0741710:CDS
AGGATCTCCATTACTGTCAT+AGG 0.406341 5_1:-61409443 None:intergenic
AGTGTTCAGGCCACGAGAAC+AGG 0.406903 5_1:-61409096 None:intergenic
CCTGAAACTCTCGCAGTTTG+AGG 0.411877 5_1:-61409520 None:intergenic
CATTGTTATACGTAGAGGTC+GGG 0.418406 5_1:-61410846 None:intergenic
TTTATACAGTTTGCATGGAT+TGG 0.418964 5_1:+61406607 Msa0741710:intron
CTTGGTAGAGATTCTGATAC+TGG 0.420188 5_1:+61406650 Msa0741710:CDS
AGTACATATAGATTATCGTT+GGG 0.421185 5_1:+61409711 Msa0741710:CDS
CTCACTTCTAACCAAATTGA+AGG 0.421384 5_1:-61407827 None:intergenic
AGAGTTGTCAGAAGGAGAAA+AGG 0.425326 5_1:+61406104 Msa0741710:CDS
GAAGAATTGCTTAGAGGTCC+AGG 0.427119 5_1:+61410446 Msa0741710:CDS
CAGCTTACTGGTGGTGCTGA+TGG 0.429526 5_1:+61407785 Msa0741710:CDS
ATGCTATAGTTTGTAGTAGT+GGG 0.429593 5_1:+61409623 Msa0741710:CDS
TAAATTTCACTTACCTTGCT+AGG 0.433136 5_1:-61409874 None:intergenic
GAGTTGTCAGAAGGAGAAAA+GGG 0.433665 5_1:+61406105 Msa0741710:CDS
TATGTCATTCTTGGAGAAAC+CGG 0.434715 5_1:+61410347 Msa0741710:CDS
CCGTCTTCTGTGTGAACACC+AGG 0.435238 5_1:-61409661 None:intergenic
CGTGCACTTGCGAAAACGGC+AGG 0.437903 5_1:+61406779 Msa0741710:CDS
GCAGGTTATCCCTCCTGGTA+TGG 0.439461 5_1:+61407706 Msa0741710:intron
AAAGGTTAGCATACAGAAGA+TGG 0.439924 5_1:+61406037 Msa0741710:CDS
AAATAAGTTCGGCAGTGTTC+AGG 0.443986 5_1:-61409109 None:intergenic
AAGATAAGGAAGCAAGATTC+TGG 0.444052 5_1:+61409328 Msa0741710:CDS
AAACTTATGAATGCCTCTAA+TGG 0.444514 5_1:+61409763 Msa0741710:CDS
TGAAAGTTGCTTCAATGCAT+TGG 0.445299 5_1:-61410549 None:intergenic
ATGATAGCACCGGAGAGAGC+AGG 0.446894 5_1:+61406912 Msa0741710:CDS
TGCTCGTGCACTTGCGAAAA+CGG 0.448989 5_1:+61406775 Msa0741710:CDS
GCAACAAGAGCACTCTCATT+TGG 0.450352 5_1:-61410494 None:intergenic
CACCCTTTGCTGCTCTTCCA+CGG 0.450640 5_1:-61405476 None:intergenic
TTTCTGCAGGTTATCCCTCC+TGG 0.464039 5_1:+61407701 Msa0741710:intron
TGTTTCTGCACTCATGCCAT+AGG 0.464242 5_1:-61409054 None:intergenic
CCTGATATTGATTGGAGCTA+TGG 0.464378 5_1:+61406842 Msa0741710:CDS
GATTATCGTTGGGGCGTTGA+AGG 0.466173 5_1:+61409721 Msa0741710:CDS
TCTTCTTGCATCTAGAGCTC+AGG 0.469294 5_1:+61410158 Msa0741710:CDS
GTGTGGCCTTATGTGATTCA+TGG 0.471189 5_1:+61407091 Msa0741710:CDS
CTGAAACTCTCGCAGTTTGA+GGG 0.472388 5_1:-61409519 None:intergenic
TCATCCTCATCATTATCATC+TGG 0.472516 5_1:-61406893 None:intergenic
ATGACTTGAGGCAAAAGCTT+CGG 0.474230 5_1:+61410073 Msa0741710:CDS
TGCTCAAGACACGTTTCACT+TGG 0.475749 5_1:-61409306 None:intergenic
TGAATTCAGTCAAAATGCTC+CGG 0.477170 5_1:+61410704 Msa0741710:three_prime_UTR
TGTACTGAATAATCTTGATC+AGG 0.479198 5_1:-61409694 None:intergenic
TCAATTAAAGTAAGACCAAA+AGG 0.482267 5_1:-61408689 None:intergenic
GGTTCAGAAGAATTGCTTAG+AGG 0.485444 5_1:+61410440 Msa0741710:CDS
ATTACCCGATTAATGTCAAC+CGG 0.487566 5_1:-61408844 None:intergenic
TTAGGTATTTGTTCGTCCGT+TGG 0.493392 5_1:+61410303 Msa0741710:intron
ACAACTCAATTTCTAGCATC+CGG 0.495323 5_1:+61409577 Msa0741710:CDS
GAACAATGGGGACTTTATGA+TGG 0.496188 5_1:+61407349 Msa0741710:CDS
ATATGCACCCCTGCTCTCTC+CGG 0.497477 5_1:-61406921 None:intergenic
TCTAATGGTGAAGAGACTAA+TGG 0.498215 5_1:+61409778 Msa0741710:CDS
GACAAGAAATTGATGAACAA+TGG 0.498509 5_1:+61407335 Msa0741710:CDS
GAAAGTTTGTGATTAATGGC+TGG 0.501296 5_1:+61405391 Msa0741710:exon
CCAAAAGGTTCCACTAAAGC+AGG 0.501308 5_1:-61408674 None:intergenic
CTGCGCCTTCGCCTTAATAG+AGG 0.501952 5_1:-61409397 None:intergenic
AGAGATCTCCGTCGACTTCA+GGG 0.502979 5_1:-61407760 None:intergenic
AGTTGATATCCTCCCACGAT+TGG 0.502981 5_1:-61407234 None:intergenic
GAATGACCAGTGAGCACCAT+TGG 0.503941 5_1:-61407169 None:intergenic
GCAGCAAATCTATATATCTC+AGG 0.507709 5_1:-61408541 None:intergenic
ATATTTGTCGCGTGGACCGA+AGG 0.509280 5_1:-61406957 None:intergenic
CTCTATTAAGGCGAAGGCGC+AGG 0.509729 5_1:+61409398 Msa0741710:CDS
AACAATGGGGACTTTATGAT+GGG 0.512391 5_1:+61407350 Msa0741710:CDS
ATCTTTATGTAATGAAGAGA+AGG 0.514988 5_1:-61405256 None:intergenic
TGATAGCACCGGAGAGAGCA+GGG 0.515618 5_1:+61406913 Msa0741710:CDS
CTTGATTCCTATGACAGTAA+TGG 0.516100 5_1:+61409436 Msa0741710:CDS
TCAGAGGCATGCTTCTAGCC+AGG 0.517688 5_1:+61406176 Msa0741710:CDS
CAGTACATATAGATTATCGT+TGG 0.519827 5_1:+61409710 Msa0741710:CDS
AGAAGCGGAAGAGCTTTCCT+TGG 0.520528 5_1:+61407282 Msa0741710:CDS
TTCCTCGTAATCAGTGTCCC+CGG 0.523537 5_1:-61410366 None:intergenic
GTGCTCACTGGTCATTCACT+TGG 0.524848 5_1:+61407175 Msa0741710:CDS
AGAAAAGGGAGATGGCATTG+GGG 0.525201 5_1:+61406119 Msa0741710:CDS
TAGTGTCCATGAATCACATA+AGG 0.526558 5_1:-61407097 None:intergenic
GACAAGTTCTGCCGCATCCA+AGG 0.527326 5_1:-61407299 None:intergenic
TCTTGCTCGCAAGAAGAAGA+AGG 0.528534 5_1:+61405675 Msa0741710:CDS
AGTCTGATCTTCATCGTACA+TGG 0.529444 5_1:+61405578 Msa0741710:CDS
GGAAGAGCAGCAAAGGGTGG+CGG 0.531056 5_1:+61405480 Msa0741710:CDS
CCACCGTGGAAGAGCAGCAA+AGG 0.534392 5_1:+61405473 Msa0741710:CDS
GATGCTATAGTTTGTAGTAG+TGG 0.535438 5_1:+61409622 Msa0741710:CDS
GGTATGCGACATGTCCATAT+AGG 0.536117 5_1:-61408492 None:intergenic
GTTGCCATCCTATGTACTGC+AGG 0.536853 5_1:+61410109 Msa0741710:CDS
TGGTCGTTACATGCCTAGAA+TGG 0.539666 5_1:+61407432 Msa0741710:CDS
CCTCAACAATGGTTTGCTTG+TGG 0.541541 5_1:+61408973 Msa0741710:CDS
CTATGATATTAGCCTTATCA+AGG 0.545314 5_1:+61408207 Msa0741710:CDS
GAATTCAGTCAAAATGCTCC+GGG 0.545318 5_1:+61410705 Msa0741710:three_prime_UTR
CACAAGCAAACCATTGTTGA+GGG 0.546030 5_1:-61408972 None:intergenic
AGATTCTGATACTGGTGGAC+AGG 0.547477 5_1:+61406658 Msa0741710:CDS
ATTCTCACAGATTAAATATG+TGG 0.547542 5_1:+61406745 Msa0741710:intron
GGAAGAGCTTTCCTTGGATG+CGG 0.547629 5_1:+61407288 Msa0741710:CDS
ATGTCATTCTTGGAGAAACC+GGG 0.550941 5_1:+61410348 Msa0741710:CDS
CTCACTCAGGCAGCTGCACA+TGG 0.552769 5_1:+61408790 Msa0741710:intron
CCTGGTGTTCACACAGAAGA+CGG 0.553137 5_1:+61409661 Msa0741710:CDS
AAAGTATTGGGCGAACAAGT+TGG 0.553972 5_1:+61407055 Msa0741710:CDS
CATCTAGAGCTCAGGCACTC+AGG 0.554105 5_1:+61410166 Msa0741710:CDS
TAGATTTGCTGCTAAAACAA+AGG 0.554181 5_1:+61408552 Msa0741710:CDS
CGAGGAGAAAACATGGAGCT+TGG 0.556627 5_1:+61406632 Msa0741710:CDS
CCACGCGTGTCAAATAAGTT+CGG 0.557990 5_1:-61409120 None:intergenic
GCGGCTGCAGCTAGAGAAAG+TGG 0.558789 5_1:+61405499 Msa0741710:CDS
TTAAGCAAGGGCGCCAATCG+TGG 0.560333 5_1:+61407221 Msa0741710:CDS
GCTATACTATCGACCGGTGG+TGG 0.561509 5_1:+61405442 Msa0741710:CDS
TTCTCGAGATATTTGTCGCG+TGG 0.562138 5_1:-61406965 None:intergenic
AGGCAAAAGCTTCGGATGAG+AGG 0.562981 5_1:+61410081 Msa0741710:CDS
TTGTTGCCACTCGTAATACA+AGG 0.564168 5_1:+61405608 Msa0741710:CDS
CATGGACACTATGCTGATGC+TGG 0.565070 5_1:+61407109 Msa0741710:CDS
TTGCCATCCTATGTACTGCA+GGG 0.565890 5_1:+61410110 Msa0741710:CDS
GACTTCAAATCTTCCTCAAG+AGG 0.566808 5_1:-61409814 None:intergenic
GGGTGCTTTGAATGTGCCAA+TGG 0.569075 5_1:+61407153 Msa0741710:CDS
CTGGTGTTCACACAGAAGAC+GGG 0.569189 5_1:+61409662 Msa0741710:CDS
GCATTGTTATACGTAGAGGT+CGG 0.571535 5_1:-61410847 None:intergenic
AAGGTTAGCATACAGAAGAT+GGG 0.571711 5_1:+61406038 Msa0741710:CDS
CTAGAACAACTTCTTAAGCA+AGG 0.573564 5_1:+61407208 Msa0741710:CDS
AACGTGTCTTGAGCAAGATA+AGG 0.573873 5_1:+61409314 Msa0741710:CDS
CACAAGACTATAATCATGAA+AGG 0.574224 5_1:+61410404 Msa0741710:CDS
TGCACTTGCGAAAACGGCAG+GGG 0.576901 5_1:+61406781 Msa0741710:CDS
AATGATGAGGATGATAGCAC+CGG 0.578093 5_1:+61406902 Msa0741710:CDS
CCTACAGAAATGCTATCTGC+AGG 0.579559 5_1:+61406869 Msa0741710:CDS
GCTAATATCATAGGCTTGTG+AGG 0.579835 5_1:-61408197 None:intergenic
TTGTCTGAAGAGTTGTCAGA+AGG 0.580306 5_1:+61406096 Msa0741710:CDS
TCTTTATGTAATGAAGAGAA+GGG 0.582023 5_1:-61405255 None:intergenic
AGGCATACTTTGTAGGTGGA+AGG 0.584031 5_1:+61406003 Msa0741710:intron
CAAAATAAATGATCCTAGCA+AGG 0.584156 5_1:+61409861 Msa0741710:CDS
TATTTGTCGCGTGGACCGAA+GGG 0.584254 5_1:-61406956 None:intergenic
TGCCATCCTATGTACTGCAG+GGG 0.584851 5_1:+61410111 Msa0741710:CDS
AATATCCTCTATTAAGGCGA+AGG 0.585012 5_1:+61409392 Msa0741710:CDS
GAAGATATGTCATCTGGGAG+TGG 0.587152 5_1:+61408427 Msa0741710:CDS
TAATGTTAGGCCCTCAACAA+TGG 0.587618 5_1:+61408962 Msa0741710:intron
CACCGTGGAAGAGCAGCAAA+GGG 0.587799 5_1:+61405474 Msa0741710:CDS
CCGAACTTATTTGACACGCG+TGG 0.589671 5_1:+61409120 Msa0741710:CDS
TTGCAACATTTAATCTCCAA+CGG 0.590507 5_1:-61410319 None:intergenic
TCTACAAATTCTTGAATGTG+AGG 0.592308 5_1:-61407001 None:intergenic
ATGAAAGGAGTTGTGTCTAA+GGG 0.592431 5_1:+61410419 Msa0741710:CDS
GGGAGTGAAGTTTATTACCC+TGG 0.593208 5_1:+61409643 Msa0741710:CDS
TGGAAGGAGAAGAACTTCAA+AGG 0.594294 5_1:+61406019 Msa0741710:CDS
ATGTTCAGGACATGTCACTT+AGG 0.594483 5_1:+61409233 Msa0741710:CDS
GTAGTAGTAGTTTGCCATTG+TGG 0.595018 5_1:-61409163 None:intergenic
TAAGCAAGGGCGCCAATCGT+GGG 0.595077 5_1:+61407222 Msa0741710:CDS
GATAATGAGAAGGATAGAAG+CGG 0.596900 5_1:+61407267 Msa0741710:CDS
CCTGCAGATAGCATTTCTGT+AGG 0.597226 5_1:-61406869 None:intergenic
AGAATATACACCTGTTCTCG+TGG 0.598823 5_1:+61409086 Msa0741710:CDS
CCACAAGCAAACCATTGTTG+AGG 0.599779 5_1:-61408973 None:intergenic
GGAAATAGAACAAGGACGTA+GGG 0.600129 5_1:+61406059 Msa0741710:CDS
TGGACCGGTTGACATTAATC+GGG 0.600202 5_1:+61408840 Msa0741710:CDS
GCAATTGCTTGATGATCATG+AGG 0.601065 5_1:-61408998 None:intergenic
TATACATCGTTCATTGCATG+TGG 0.602722 5_1:+61405207 Msa0741710:five_prime_UTR
TAGAACAACTTCTTAAGCAA+GGG 0.602882 5_1:+61407209 Msa0741710:CDS
AATGTGCCAATGGTGCTCAC+TGG 0.603170 5_1:+61407163 Msa0741710:CDS
TGAGCTCTAGATGCAAGAAG+AGG 0.603752 5_1:-61410156 None:intergenic
TATATCATAAGAATACCCTT+CGG 0.604189 5_1:+61406941 Msa0741710:CDS
ACATAGAAGATATGTCATCT+GGG 0.604548 5_1:+61408422 Msa0741710:CDS
TTGGGCGAACAAGTTGGCGG+TGG 0.604911 5_1:+61407061 Msa0741710:CDS
AGCTGCACATGGACTGCCAA+TGG 0.606889 5_1:+61408801 Msa0741710:CDS
TCAGAAGGAGAAAAGGGAGA+TGG 0.607859 5_1:+61406111 Msa0741710:CDS
AGTTGATTGAGATAGTTCAA+AGG 0.609184 5_1:+61409473 Msa0741710:CDS
AATAGCAACTAGTCCTCTTG+AGG 0.609835 5_1:+61409801 Msa0741710:CDS
CAAGGAAGGTTGATGACTTG+AGG 0.610043 5_1:+61410061 Msa0741710:CDS
GTACATATAGATTATCGTTG+GGG 0.610998 5_1:+61409712 Msa0741710:CDS
AGAGGTCGGGGTTCGAACAT+CGG 0.611101 5_1:-61410833 None:intergenic
GGTGGTAGAAGCACCACCAC+CGG 0.611216 5_1:-61405455 None:intergenic
GGGAAATAGAACAAGGACGT+AGG 0.612480 5_1:+61406058 Msa0741710:CDS
CAAGACTCGAGAACATGTGT+TGG 0.613633 5_1:+61405641 Msa0741710:CDS
GAAGATGGCCCTGAAGTCGA+CGG 0.615795 5_1:+61407752 Msa0741710:CDS
GCGTGGATGCATGTAGAATG+AGG 0.615836 5_1:+61409137 Msa0741710:CDS
AAGCAACTTTCAAAATCTGG+AGG 0.616780 5_1:+61410560 Msa0741710:CDS
GTGCACTTGCGAAAACGGCA+GGG 0.618490 5_1:+61406780 Msa0741710:CDS
AGGCGTGGTGTCAATTGTCA+TGG 0.621345 5_1:+61407412 Msa0741710:CDS
AGTGTGGTGATACAAGAAGA+TGG 0.621873 5_1:+61407737 Msa0741710:CDS
ACACTGCTGAAGTCCATACC+AGG 0.623790 5_1:-61407719 None:intergenic
ATTGTTATACGTAGAGGTCG+GGG 0.624722 5_1:-61410845 None:intergenic
CTTGAGGCTATACTATCGAC+CGG 0.633150 5_1:+61405436 Msa0741710:CDS
ACAAGGACGTAGGGATGCAA+CGG 0.633930 5_1:+61406068 Msa0741710:CDS
GTATTGGGCGAACAAGTTGG+CGG 0.638742 5_1:+61407058 Msa0741710:CDS
CGTGGAAGAGCAGCAAAGGG+TGG 0.640548 5_1:+61405477 Msa0741710:CDS
GCCATCCTATGTACTGCAGG+GGG 0.643558 5_1:+61410112 Msa0741710:CDS
GCAAGGGCGCCAATCGTGGG+AGG 0.643681 5_1:+61407225 Msa0741710:CDS
AACCGGGGACACTGATTACG+AGG 0.645232 5_1:+61410364 Msa0741710:CDS
ACGTTCCCTTGTATTACGAG+TGG 0.651461 5_1:-61405614 None:intergenic
CGGTCGATAGTATAGCCTCA+AGG 0.654154 5_1:-61405435 None:intergenic
TGCACATGGACTGCCAATGG+TGG 0.655157 5_1:+61408804 Msa0741710:CDS
CAACGTATAAGATAATGAGA+AGG 0.658712 5_1:+61407257 Msa0741710:CDS
GATCTCTCACAGCTTACTGG+TGG 0.658933 5_1:+61407776 Msa0741710:CDS
ATGAGTGCAGAAACAATGGT+TGG 0.659698 5_1:+61409062 Msa0741710:CDS
ATTGGTACGAGGAGAAAACA+TGG 0.659978 5_1:+61406625 Msa0741710:CDS
GATTAATGGCTGGTAATGAG+TGG 0.660879 5_1:+61405401 Msa0741710:exon
GGTAGAGATTCTGATACTGG+TGG 0.661211 5_1:+61406653 Msa0741710:CDS
TGAATCACATAAGGCCACAC+AGG 0.666294 5_1:-61407088 None:intergenic
TGCTGAAGTCCATACCAGGA+GGG 0.669375 5_1:-61407715 None:intergenic
TGGTATGGACTTCAGCAGTG+TGG 0.669404 5_1:+61407721 Msa0741710:CDS
CATGTTGAGAATGTGAGCTA+AGG 0.670102 5_1:-61407029 None:intergenic
AGAAGATGGGAAATAGAACA+AGG 0.672517 5_1:+61406051 Msa0741710:CDS
TGGCATGAGTGCAGAAACAA+TGG 0.674469 5_1:+61409058 Msa0741710:CDS
AGTTTGCATGGATTGGTACG+AGG 0.674490 5_1:+61406614 Msa0741710:intron
GTAGAATGAGGCATCCACAA+TGG 0.679184 5_1:+61409149 Msa0741710:CDS
AGGACGTAGGGATGCAACGG+AGG 0.683308 5_1:+61406071 Msa0741710:CDS
TCGTTACATGCCTAGAATGG+CGG 0.685556 5_1:+61407435 Msa0741710:CDS
TGAATGTTACATGATCGACA+TGG 0.686618 5_1:-61405282 None:intergenic
GAATTTGCTGCATCAAGCGG+TGG 0.686684 5_1:+61409271 Msa0741710:CDS
GGTGAATTTGCTGCATCAAG+CGG 0.687360 5_1:+61409268 Msa0741710:CDS
TTGCGTGCACGTGATAGGCG+TGG 0.688908 5_1:+61407397 Msa0741710:CDS
TGGTGGTGCTTCTACCACCG+TGG 0.689668 5_1:+61405459 Msa0741710:CDS
GTGGATTAATGGCTACCTTG+AGG 0.690844 5_1:+61405420 Msa0741710:CDS
GATAGCACCGGAGAGAGCAG+GGG 0.693560 5_1:+61406914 Msa0741710:CDS
CGTCTTCTGTGTGAACACCA+GGG 0.693652 5_1:-61409660 None:intergenic
CAATTGCTTGATGATCATGA+GGG 0.695895 5_1:-61408997 None:intergenic
GAGGCTATACTATCGACCGG+TGG 0.697000 5_1:+61405439 Msa0741710:CDS
CTGCTGAAGTCCATACCAGG+AGG 0.703376 5_1:-61407716 None:intergenic
TGTCATTCTTGGAGAAACCG+GGG 0.712395 5_1:+61410349 Msa0741710:CDS
ATGCATTAGTGAAACAACAG+AGG 0.717974 5_1:+61410517 Msa0741710:CDS
TTGGCGGTGGACAACCTGTG+TGG 0.719682 5_1:+61407074 Msa0741710:CDS
AGGTCCAGATGATAATGATG+AGG 0.720340 5_1:+61406889 Msa0741710:CDS
CCTTTGCTGCTCTTCCACGG+TGG 0.722242 5_1:-61405473 None:intergenic
TGTTGCCACTCGTAATACAA+GGG 0.724087 5_1:+61405609 Msa0741710:CDS
CAAGAAATTGATGAACAATG+GGG 0.724779 5_1:+61407337 Msa0741710:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TATATTAAGATTAATTTGTT+TGG + chr5_1:61405930-61405949 Msa0741710:intron 10.0%
!!! TTCCTATATTTTAAAATAAA+TGG + chr5_1:61408921-61408940 Msa0741710:intron 10.0%
!! AATATGATTATATAGATTTG+AGG - chr5_1:61406502-61406521 None:intergenic 15.0%
!! TTATTATTAACTAAATGAGA+GGG - chr5_1:61406718-61406737 None:intergenic 15.0%
!! ATTATTATTAACTAAATGAG+AGG - chr5_1:61406719-61406738 None:intergenic 15.0%
!! ATTAATTGATATGTTATGAT+TGG - chr5_1:61407556-61407575 None:intergenic 15.0%
!!! CAATTAATTCATAGTATTTT+AGG + chr5_1:61407568-61407587 Msa0741710:intron 15.0%
!! GTTTATTATTTAAATGTGTT+AGG + chr5_1:61410285-61410304 Msa0741710:intron 15.0%
!!! CTTTTTAAAAGTGAATAAAT+GGG + chr5_1:61410806-61410825 Msa0741710:three_prime_UTR 15.0%
!!! TTTTTAAAAGTGAATAAATG+GGG + chr5_1:61410807-61410826 Msa0741710:three_prime_UTR 15.0%
!!! TCTTCAACAAAATATTTTGT+TGG - chr5_1:61405538-61405557 None:intergenic 20.0%
!! GTATGTTTATGAATGAAAAT+TGG - chr5_1:61405734-61405753 None:intergenic 20.0%
!!! TAAGATTAATTTGTTTGGAT+TGG + chr5_1:61405935-61405954 Msa0741710:intron 20.0%
!! AACTTTATATTATCCTCTTA+AGG + chr5_1:61406229-61406248 Msa0741710:CDS 20.0%
!! TAAGAATAATATACCTTAAG+AGG - chr5_1:61406245-61406264 None:intergenic 20.0%
!! TTATGAAAATAAGCTGAAAA+CGG + chr5_1:61406400-61406419 Msa0741710:intron 20.0%
!!! TTATACACTGATAGTATTTT+AGG + chr5_1:61407648-61407667 Msa0741710:intron 20.0%
!! AATACTGATAGTAAAAAGTT+TGG + chr5_1:61408078-61408097 Msa0741710:intron 20.0%
!! AAAATATCAAACTAGTTAGT+TGG - chr5_1:61408633-61408652 None:intergenic 20.0%
!!! CGCCATTTATTTTAAAATAT+AGG - chr5_1:61408926-61408945 None:intergenic 20.0%
!!! TGATTCTTTGTTATAATGTT+AGG + chr5_1:61408949-61408968 Msa0741710:intron 20.0%
!!! TGAATACTATGGAAATTTTA+TGG - chr5_1:61410255-61410274 None:intergenic 20.0%
!!! CCATTTATTCACTTTTAAAA+AGG - chr5_1:61410808-61410827 None:intergenic 20.0%
!!! CCTTTTTAAAAGTGAATAAA+TGG + chr5_1:61410805-61410824 Msa0741710:three_prime_UTR 20.0%
! TCTTTATGTAATGAAGAGAA+GGG - chr5_1:61405258-61405277 None:intergenic 25.0%
! ATCTTTATGTAATGAAGAGA+AGG - chr5_1:61405259-61405278 None:intergenic 25.0%
! CAAAGAAAGTTTGTGATTAA+TGG + chr5_1:61405387-61405406 Msa0741710:exon 25.0%
! CTGAAACACTCAAAAAATTT+AGG - chr5_1:61405859-61405878 None:intergenic 25.0%
! CCTAACAATGTTTAATAGTA+TGG - chr5_1:61405896-61405915 None:intergenic 25.0%
! CCATACTATTAAACATTGTT+AGG + chr5_1:61405893-61405912 Msa0741710:intron 25.0%
! CCAAATTCATAGGATAAATT+AGG - chr5_1:61405961-61405980 None:intergenic 25.0%
! CCTAATTTATCCTATGAATT+TGG + chr5_1:61405958-61405977 Msa0741710:intron 25.0%
! AGGTATATTATTCTTAGACT+CGG + chr5_1:61406249-61406268 Msa0741710:intron 25.0%
! ATTCTCACAGATTAAATATG+TGG + chr5_1:61406745-61406764 Msa0741710:intron 25.0%
! TATATCATAAGAATACCCTT+CGG + chr5_1:61406941-61406960 Msa0741710:CDS 25.0%
! ACAAGAAATTGATGAACAAT+GGG + chr5_1:61407336-61407355 Msa0741710:CDS 25.0%
! TAGCATATATCAGTTATGAT+TGG + chr5_1:61407609-61407628 Msa0741710:intron 25.0%
! TATACAGTGATAATATGTGT+TGG + chr5_1:61407855-61407874 Msa0741710:intron 25.0%
! CCTTCATTTAACAAATTCTT+AGG - chr5_1:61407913-61407932 None:intergenic 25.0%
!!! CCTAAGAATTTGTTAAATGA+AGG + chr5_1:61407910-61407929 Msa0741710:intron 25.0%
! AGTGTAGATCAAAATATCTT+AGG + chr5_1:61407971-61407990 Msa0741710:intron 25.0%
! GTGTAGATCAAAATATCTTA+GGG + chr5_1:61407972-61407991 Msa0741710:intron 25.0%
! TGTAGATCAAAATATCTTAG+GGG + chr5_1:61407973-61407992 Msa0741710:intron 25.0%
! CATAGTAATTCTTTGGTTAT+CGG - chr5_1:61408025-61408044 None:intergenic 25.0%
! GTCAATAACAGTACTAAATA+AGG - chr5_1:61408133-61408152 None:intergenic 25.0%
! TGAAACTAATAACATTATGC+AGG + chr5_1:61408154-61408173 Msa0741710:intron 25.0%
! GAACATAACAACTCTATTAA+AGG + chr5_1:61408244-61408263 Msa0741710:CDS 25.0%
! ATTGACAAATATGACCTATA+TGG + chr5_1:61408478-61408497 Msa0741710:CDS 25.0%
!!! ACTAGTTTGATATTTTTCTC+AGG + chr5_1:61408637-61408656 Msa0741710:intron 25.0%
!! CTAGTTTGATATTTTTCTCA+GGG + chr5_1:61408638-61408657 Msa0741710:intron 25.0%
!! TAGTTTGATATTTTTCTCAG+GGG + chr5_1:61408639-61408658 Msa0741710:intron 25.0%
! TCAATTAAAGTAAGACCAAA+AGG - chr5_1:61408692-61408711 None:intergenic 25.0%
!!! TTTTGGTCTTACTTTAATTG+AGG + chr5_1:61408691-61408710 Msa0741710:CDS 25.0%
!!! TTTTAACTAACTTACCACTT+TGG + chr5_1:61408718-61408737 Msa0741710:intron 25.0%
! CAAACAAATATCCTCTATTA+AGG + chr5_1:61409386-61409405 Msa0741710:CDS 25.0%
! AGTACATATAGATTATCGTT+GGG + chr5_1:61409711-61409730 Msa0741710:CDS 25.0%
!! TCCTATAAATTGTTCGTTTT+AGG + chr5_1:61410038-61410057 Msa0741710:intron 25.0%
! CATTCAAATTCTGAATACTA+TGG - chr5_1:61410266-61410285 None:intergenic 25.0%
!!! TTACTTTTCCAAGTATAGAA+TGG + chr5_1:61410643-61410662 Msa0741710:three_prime_UTR 25.0%
! TTCAATTTCCATTCTATACT+TGG - chr5_1:61410654-61410673 None:intergenic 25.0%
!!! TTTTTTGTGAAGTAGTTTAC+TGG + chr5_1:61410772-61410791 Msa0741710:three_prime_UTR 25.0%
! CGATGTATATTGCTCATTTT+TGG - chr5_1:61405196-61405215 None:intergenic 30.0%
! ACTAGTTTCACCAAATTCAT+AGG - chr5_1:61405971-61405990 None:intergenic 30.0%
! AAACTAGTAGAGTACTAATG+AGG + chr5_1:61405983-61406002 Msa0741710:intron 30.0%
AATATGGTCTGATGACAAAA+AGG + chr5_1:61406200-61406219 Msa0741710:CDS 30.0%
GCTTGTACAATAAACACTTA+TGG - chr5_1:61406307-61406326 None:intergenic 30.0%
GCTATTTGCAATTGTTATCA+TGG + chr5_1:61406372-61406391 Msa0741710:intron 30.0%
TTGAGGTGAACAAAGAATAA+GGG - chr5_1:61406485-61406504 None:intergenic 30.0%
! TTTGAGGTGAACAAAGAATA+AGG - chr5_1:61406486-61406505 None:intergenic 30.0%
TTTATACAGTTTGCATGGAT+TGG + chr5_1:61406607-61406626 Msa0741710:intron 30.0%
CAATATCAGGAGATGATATT+TGG - chr5_1:61406832-61406851 None:intergenic 30.0%
TATCATCTCCTGATATTGAT+TGG + chr5_1:61406834-61406853 Msa0741710:CDS 30.0%
TCTACAAATTCTTGAATGTG+AGG - chr5_1:61407004-61407023 None:intergenic 30.0%
CACATTCAAGAATTTGTAGA+TGG + chr5_1:61407004-61407023 Msa0741710:CDS 30.0%
! TCTCAACATGTCAAAAGTAT+TGG + chr5_1:61407042-61407061 Msa0741710:CDS 30.0%
!! CTCAACATGTCAAAAGTATT+GGG + chr5_1:61407043-61407062 Msa0741710:CDS 30.0%
TAGAACAACTTCTTAAGCAA+GGG + chr5_1:61407209-61407228 Msa0741710:CDS 30.0%
CAACGTATAAGATAATGAGA+AGG + chr5_1:61407257-61407276 Msa0741710:CDS 30.0%
GACAAGAAATTGATGAACAA+TGG + chr5_1:61407335-61407354 Msa0741710:CDS 30.0%
CAAGAAATTGATGAACAATG+GGG + chr5_1:61407337-61407356 Msa0741710:CDS 30.0%
CATTTAAGAGATGGTATGAT+TGG - chr5_1:61407678-61407697 None:intergenic 30.0%
CAATCATACCATCTCTTAAA+TGG + chr5_1:61407676-61407695 Msa0741710:intron 30.0%
CAGAAATTCCATTTAAGAGA+TGG - chr5_1:61407687-61407706 None:intergenic 30.0%
! CAAATTGAAGGTAAAGCTTT+TGG - chr5_1:61407818-61407837 None:intergenic 30.0%
CAAAAGCTTTACCTTCAATT+TGG + chr5_1:61407816-61407835 Msa0741710:CDS 30.0%
TGTGTGACATAGTAATTCTT+TGG - chr5_1:61408032-61408051 None:intergenic 30.0%
ACTGATAGTAAAAAGTTTGG+AGG + chr5_1:61408081-61408100 Msa0741710:intron 30.0%
CTTGATAAGGCTAATATCAT+AGG - chr5_1:61408209-61408228 None:intergenic 30.0%
!! CTATGATATTAGCCTTATCA+AGG + chr5_1:61408207-61408226 Msa0741710:CDS 30.0%
AGAGTTGTTATGTTCTTCTT+TGG - chr5_1:61408239-61408258 None:intergenic 30.0%
! ACAACTCTATTAAAGGCTTT+TGG + chr5_1:61408251-61408270 Msa0741710:CDS 30.0%
!!! AAGATTAGCTAGTTTTCTCA+AGG - chr5_1:61408288-61408307 None:intergenic 30.0%
CATAATTCAATTGCCATACT+TGG + chr5_1:61408324-61408343 Msa0741710:intron 30.0%
! ATCATATTTTCCACCAAGTA+TGG - chr5_1:61408340-61408359 None:intergenic 30.0%
TTCTAAACAGACCCTTATAA+TGG + chr5_1:61408387-61408406 Msa0741710:intron 30.0%
TCTAAACAGACCCTTATAAT+GGG + chr5_1:61408388-61408407 Msa0741710:intron 30.0%
ATCTCTGTTTCCCATTATAA+GGG - chr5_1:61408401-61408420 None:intergenic 30.0%
ACATAGAAGATATGTCATCT+GGG + chr5_1:61408422-61408441 Msa0741710:CDS 30.0%
CAGATTGTCTATGATGTTTA+GGG - chr5_1:61408516-61408535 None:intergenic 30.0%
TCAGATTGTCTATGATGTTT+AGG - chr5_1:61408517-61408536 None:intergenic 30.0%
!! TAGATTTGCTGCTAAAACAA+AGG + chr5_1:61408552-61408571 Msa0741710:CDS 30.0%
! AGTTTGATATTTTTCTCAGG+GGG + chr5_1:61408640-61408659 Msa0741710:intron 30.0%
TTTCATAAATCCTGCTTTAG+TGG + chr5_1:61408664-61408683 Msa0741710:CDS 30.0%
ATATGTGTTTAAACTCACTC+AGG + chr5_1:61408777-61408796 Msa0741710:intron 30.0%
TGTTATCAGAGAAAAACCTA+TGG + chr5_1:61409038-61409057 Msa0741710:CDS 30.0%
GTCTTTCAATGATTCACTTA+AGG + chr5_1:61409210-61409229 Msa0741710:CDS 30.0%
ATCTCAATCAACTTCTTATC+AGG - chr5_1:61409466-61409485 None:intergenic 30.0%
AGTTGATTGAGATAGTTCAA+AGG + chr5_1:61409473-61409492 Msa0741710:CDS 30.0%
TTCATTCACTTGAACATTTC+CGG - chr5_1:61409599-61409618 None:intergenic 30.0%
! ATGCTATAGTTTGTAGTAGT+GGG + chr5_1:61409623-61409642 Msa0741710:CDS 30.0%
TGTACTGAATAATCTTGATC+AGG - chr5_1:61409697-61409716 None:intergenic 30.0%
CAGTACATATAGATTATCGT+TGG + chr5_1:61409710-61409729 Msa0741710:CDS 30.0%
GTACATATAGATTATCGTTG+GGG + chr5_1:61409712-61409731 Msa0741710:CDS 30.0%
AAACTTATGAATGCCTCTAA+TGG + chr5_1:61409763-61409782 Msa0741710:CDS 30.0%
CAAAATAAATGATCCTAGCA+AGG + chr5_1:61409861-61409880 Msa0741710:CDS 30.0%
TAAATTTCACTTACCTTGCT+AGG - chr5_1:61409877-61409896 None:intergenic 30.0%
!!! TTACAGCATGTTTTGATTCA+CGG - chr5_1:61409995-61410014 None:intergenic 30.0%
GCCTAAAACGAACAATTTAT+AGG - chr5_1:61410042-61410061 None:intergenic 30.0%
!! TAAATTGTTCGTTTTAGGCA+AGG + chr5_1:61410043-61410062 Msa0741710:intron 30.0%
TTGCAACATTTAATCTCCAA+CGG - chr5_1:61410322-61410341 None:intergenic 30.0%
CACAAGACTATAATCATGAA+AGG + chr5_1:61410404-61410423 Msa0741710:CDS 30.0%
TTGAAGCAACTTTCAAAATC+TGG + chr5_1:61410557-61410576 Msa0741710:CDS 30.0%
ATTGAGAGCAAGCAAAAATA+CGG - chr5_1:61410731-61410750 None:intergenic 30.0%
TATACATCGTTCATTGCATG+TGG + chr5_1:61405207-61405226 Msa0741710:five_prime_UTR 35.0%
TGAATGTTACATGATCGACA+TGG - chr5_1:61405285-61405304 None:intergenic 35.0%
GAAAGTTTGTGATTAATGGC+TGG + chr5_1:61405391-61405410 Msa0741710:exon 35.0%
TAGGTGTAGAGTTCAAACTT+TGG - chr5_1:61405840-61405859 None:intergenic 35.0%
ACTAATGAGGCATACTTTGT+AGG + chr5_1:61405996-61406015 Msa0741710:intron 35.0%
AAAGGTTAGCATACAGAAGA+TGG + chr5_1:61406037-61406056 Msa0741710:CDS 35.0%
AAGGTTAGCATACAGAAGAT+GGG + chr5_1:61406038-61406057 Msa0741710:CDS 35.0%
AGAAGATGGGAAATAGAACA+AGG + chr5_1:61406051-61406070 Msa0741710:CDS 35.0%
CTCAACAGAAAAAACTTCAG+AGG + chr5_1:61406160-61406179 Msa0741710:CDS 35.0%
GCAATGTTTGATCATGAACT+TGG + chr5_1:61406582-61406601 Msa0741710:intron 35.0%
! TGGCTTTTATACAGTTTGCA+TGG + chr5_1:61406602-61406621 Msa0741710:intron 35.0%
TCATCCTCATCATTATCATC+TGG - chr5_1:61406896-61406915 None:intergenic 35.0%
ATCTCGAGAAAGAACTTCTT+TGG + chr5_1:61406978-61406997 Msa0741710:CDS 35.0%
TAGTGTCCATGAATCACATA+AGG - chr5_1:61407100-61407119 None:intergenic 35.0%
CTAGAACAACTTCTTAAGCA+AGG + chr5_1:61407208-61407227 Msa0741710:CDS 35.0%
GATAATGAGAAGGATAGAAG+CGG + chr5_1:61407267-61407286 Msa0741710:CDS 35.0%
AACAATGGGGACTTTATGAT+GGG + chr5_1:61407350-61407369 Msa0741710:CDS 35.0%
CTCTTAAATGGAATTTCTGC+AGG + chr5_1:61407688-61407707 Msa0741710:intron 35.0%
CTCACTTCTAACCAAATTGA+AGG - chr5_1:61407830-61407849 None:intergenic 35.0%
ATGTGATCATATATGCCTCA+AGG + chr5_1:61407943-61407962 Msa0741710:intron 35.0%
GTTATGTTCTTCTTTGGATC+TGG - chr5_1:61408233-61408252 None:intergenic 35.0%
AATTCAATTGCCATACTTGG+TGG + chr5_1:61408327-61408346 Msa0741710:intron 35.0%
CATCTCTGTTTCCCATTATA+AGG - chr5_1:61408402-61408421 None:intergenic 35.0%
GACATAGAAGATATGTCATC+TGG + chr5_1:61408421-61408440 Msa0741710:CDS 35.0%
GCAGCAAATCTATATATCTC+AGG - chr5_1:61408544-61408563 None:intergenic 35.0%
ATGTGAATATGTCACCAAAG+TGG - chr5_1:61408735-61408754 None:intergenic 35.0%
ATTACCCGATTAATGTCAAC+CGG - chr5_1:61408847-61408866 None:intergenic 35.0%
TGAGTTACAATGTGCATACT+AGG + chr5_1:61408895-61408914 Msa0741710:intron 35.0%
! CAATTGCTTGATGATCATGA+GGG - chr5_1:61409000-61409019 None:intergenic 35.0%
TGATTCACTTAAGGATGTTC+AGG + chr5_1:61409219-61409238 Msa0741710:CDS 35.0%
TCACTTAGGCTTTCAATTGA+TGG + chr5_1:61409247-61409266 Msa0741710:CDS 35.0%
AAGATAAGGAAGCAAGATTC+TGG + chr5_1:61409328-61409347 Msa0741710:CDS 35.0%
AATATCCTCTATTAAGGCGA+AGG + chr5_1:61409392-61409411 Msa0741710:CDS 35.0%
CTTGATTCCTATGACAGTAA+TGG + chr5_1:61409436-61409455 Msa0741710:CDS 35.0%
!! ACAACTCAATTTCTAGCATC+CGG + chr5_1:61409577-61409596 Msa0741710:CDS 35.0%
! GATGCTATAGTTTGTAGTAG+TGG + chr5_1:61409622-61409641 Msa0741710:CDS 35.0%
! ATTAGTCTCTTCACCATTAG+AGG - chr5_1:61409779-61409798 None:intergenic 35.0%
TCTAATGGTGAAGAGACTAA+TGG + chr5_1:61409778-61409797 Msa0741710:CDS 35.0%
! TAAGTGCATGGTTGGTATTA+CGG + chr5_1:61409924-61409943 Msa0741710:intron 35.0%
GCAAACATGTATGTCATTCT+TGG + chr5_1:61410338-61410357 Msa0741710:CDS 35.0%
TATGTCATTCTTGGAGAAAC+CGG + chr5_1:61410347-61410366 Msa0741710:CDS 35.0%
GATTACGAGGAAATGATTTC+TGG + chr5_1:61410377-61410396 Msa0741710:CDS 35.0%
ATGAAAGGAGTTGTGTCTAA+GGG + chr5_1:61410419-61410438 Msa0741710:CDS 35.0%
TTGGTACAACATCATCTCTT+TGG - chr5_1:61410478-61410497 None:intergenic 35.0%
ATGCATTAGTGAAACAACAG+AGG + chr5_1:61410517-61410536 Msa0741710:CDS 35.0%
TGAAAGTTGCTTCAATGCAT+TGG - chr5_1:61410552-61410571 None:intergenic 35.0%
AAGCAACTTTCAAAATCTGG+AGG + chr5_1:61410560-61410579 Msa0741710:CDS 35.0%
TGAATTCAGTCAAAATGCTC+CGG + chr5_1:61410704-61410723 Msa0741710:three_prime_UTR 35.0%
! GATTAATGGCTGGTAATGAG+TGG + chr5_1:61405401-61405420 Msa0741710:exon 40.0%
!! GCTGGTAATGAGTGGATTAA+TGG + chr5_1:61405409-61405428 Msa0741710:CDS 40.0%
AGTCTGATCTTCATCGTACA+TGG + chr5_1:61405578-61405597 Msa0741710:CDS 40.0%
TCTTCATCGTACATGGCTTA+AGG + chr5_1:61405585-61405604 Msa0741710:CDS 40.0%
TTGTTGCCACTCGTAATACA+AGG + chr5_1:61405608-61405627 Msa0741710:CDS 40.0%
TGTTGCCACTCGTAATACAA+GGG + chr5_1:61405609-61405628 Msa0741710:CDS 40.0%
! AGAACATGTGTTGGCGTATT+TGG + chr5_1:61405650-61405669 Msa0741710:CDS 40.0%
AATGAGGCATACTTTGTAGG+TGG + chr5_1:61405999-61406018 Msa0741710:intron 40.0%
TGGAAGGAGAAGAACTTCAA+AGG + chr5_1:61406019-61406038 Msa0741710:CDS 40.0%
GGAAATAGAACAAGGACGTA+GGG + chr5_1:61406059-61406078 Msa0741710:CDS 40.0%
TTGTCTGAAGAGTTGTCAGA+AGG + chr5_1:61406096-61406115 Msa0741710:CDS 40.0%
AGAGTTGTCAGAAGGAGAAA+AGG + chr5_1:61406104-61406123 Msa0741710:CDS 40.0%
GAGTTGTCAGAAGGAGAAAA+GGG + chr5_1:61406105-61406124 Msa0741710:CDS 40.0%
ATGCTTCTAGCCAGGAAATA+TGG + chr5_1:61406184-61406203 Msa0741710:CDS 40.0%
TGTCATCAGACCATATTTCC+TGG - chr5_1:61406197-61406216 None:intergenic 40.0%
ATTGGTACGAGGAGAAAACA+TGG + chr5_1:61406625-61406644 Msa0741710:CDS 40.0%
CTTGGTAGAGATTCTGATAC+TGG + chr5_1:61406650-61406669 Msa0741710:CDS 40.0%
CCATAGCTCCAATCAATATC+AGG - chr5_1:61406845-61406864 None:intergenic 40.0%
! CCTGATATTGATTGGAGCTA+TGG + chr5_1:61406842-61406861 Msa0741710:CDS 40.0%
! AGGTCCAGATGATAATGATG+AGG + chr5_1:61406889-61406908 Msa0741710:CDS 40.0%
AATGATGAGGATGATAGCAC+CGG + chr5_1:61406902-61406921 Msa0741710:CDS 40.0%
CATGTTGAGAATGTGAGCTA+AGG - chr5_1:61407032-61407051 None:intergenic 40.0%
!! AAAGTATTGGGCGAACAAGT+TGG + chr5_1:61407055-61407074 Msa0741710:CDS 40.0%
GAACAATGGGGACTTTATGA+TGG + chr5_1:61407349-61407368 Msa0741710:CDS 40.0%
AGTGTGGTGATACAAGAAGA+TGG + chr5_1:61407737-61407756 Msa0741710:CDS 40.0%
GATCTACACTCAAAACCTTG+AGG - chr5_1:61407961-61407980 None:intergenic 40.0%
GCTAATATCATAGGCTTGTG+AGG - chr5_1:61408200-61408219 None:intergenic 40.0%
TAATGTTAGGCCCTCAACAA+TGG + chr5_1:61408962-61408981 Msa0741710:intron 40.0%
CACAAGCAAACCATTGTTGA+GGG - chr5_1:61408975-61408994 None:intergenic 40.0%
! GCAATTGCTTGATGATCATG+AGG - chr5_1:61409001-61409020 None:intergenic 40.0%
ATGAGTGCAGAAACAATGGT+TGG + chr5_1:61409062-61409081 Msa0741710:CDS 40.0%
AGAATATACACCTGTTCTCG+TGG + chr5_1:61409086-61409105 Msa0741710:CDS 40.0%
AAATAAGTTCGGCAGTGTTC+AGG - chr5_1:61409112-61409131 None:intergenic 40.0%
! GTAGTAGTAGTTTGCCATTG+TGG - chr5_1:61409166-61409185 None:intergenic 40.0%
! ATGTTCAGGACATGTCACTT+AGG + chr5_1:61409233-61409252 Msa0741710:CDS 40.0%
AACGTGTCTTGAGCAAGATA+AGG + chr5_1:61409314-61409333 Msa0741710:CDS 40.0%
AGGATCTCCATTACTGTCAT+AGG - chr5_1:61409446-61409465 None:intergenic 40.0%
AATAGCAACTAGTCCTCTTG+AGG + chr5_1:61409801-61409820 Msa0741710:CDS 40.0%
GACTTCAAATCTTCCTCAAG+AGG - chr5_1:61409817-61409836 None:intergenic 40.0%
! TAATCTGTGTCGGTATGCAA+AGG - chr5_1:61409906-61409925 None:intergenic 40.0%
ACCATGCACTTAATCTGTGT+CGG - chr5_1:61409916-61409935 None:intergenic 40.0%
ACACAGATTAAGTGCATGGT+TGG + chr5_1:61409916-61409935 Msa0741710:intron 40.0%
ACGGTGAGTTATCAGAATCA+CGG - chr5_1:61409976-61409995 None:intergenic 40.0%
!! TTGTTCGTTTTAGGCAAGGA+AGG + chr5_1:61410047-61410066 Msa0741710:intron 40.0%
ATGACTTGAGGCAAAAGCTT+CGG + chr5_1:61410073-61410092 Msa0741710:CDS 40.0%
TTAGGTATTTGTTCGTCCGT+TGG + chr5_1:61410303-61410322 Msa0741710:intron 40.0%
ATGTCATTCTTGGAGAAACC+GGG + chr5_1:61410348-61410367 Msa0741710:CDS 40.0%
CATGAAAGGAGTTGTGTCTA+AGG + chr5_1:61410418-61410437 Msa0741710:CDS 40.0%
GGTTCAGAAGAATTGCTTAG+AGG + chr5_1:61410440-61410459 Msa0741710:CDS 40.0%
GAATTCAGTCAAAATGCTCC+GGG + chr5_1:61410705-61410724 Msa0741710:three_prime_UTR 40.0%
! GTGGATTAATGGCTACCTTG+AGG + chr5_1:61405420-61405439 Msa0741710:CDS 45.0%
CTTGAGGCTATACTATCGAC+CGG + chr5_1:61405436-61405455 Msa0741710:CDS 45.0%
ACGTTCCCTTGTATTACGAG+TGG - chr5_1:61405617-61405636 None:intergenic 45.0%
CAAGACTCGAGAACATGTGT+TGG + chr5_1:61405641-61405660 Msa0741710:CDS 45.0%
TCTTGCTCGCAAGAAGAAGA+AGG + chr5_1:61405675-61405694 Msa0741710:CDS 45.0%
AGGCATACTTTGTAGGTGGA+AGG + chr5_1:61406003-61406022 Msa0741710:intron 45.0%
GGGAAATAGAACAAGGACGT+AGG + chr5_1:61406058-61406077 Msa0741710:CDS 45.0%
TCAGAAGGAGAAAAGGGAGA+TGG + chr5_1:61406111-61406130 Msa0741710:CDS 45.0%
GAGAAAAGGGAGATGGCATT+GGG + chr5_1:61406118-61406137 Msa0741710:CDS 45.0%
AGAAAAGGGAGATGGCATTG+GGG + chr5_1:61406119-61406138 Msa0741710:CDS 45.0%
!! AGTTTGCATGGATTGGTACG+AGG + chr5_1:61406614-61406633 Msa0741710:intron 45.0%
GGTAGAGATTCTGATACTGG+TGG + chr5_1:61406653-61406672 Msa0741710:CDS 45.0%
! AGATTCTGATACTGGTGGAC+AGG + chr5_1:61406658-61406677 Msa0741710:CDS 45.0%
CCTGCAGATAGCATTTCTGT+AGG - chr5_1:61406872-61406891 None:intergenic 45.0%
CCTACAGAAATGCTATCTGC+AGG + chr5_1:61406869-61406888 Msa0741710:CDS 45.0%
TTCTCGAGATATTTGTCGCG+TGG - chr5_1:61406968-61406987 None:intergenic 45.0%
TGAATCACATAAGGCCACAC+AGG - chr5_1:61407091-61407110 None:intergenic 45.0%
!! GTGTGGCCTTATGTGATTCA+TGG + chr5_1:61407091-61407110 Msa0741710:CDS 45.0%
! TGACAGTGCTGCTCTTCTTT+CGG + chr5_1:61407132-61407151 Msa0741710:CDS 45.0%
! AGTTGATATCCTCCCACGAT+TGG - chr5_1:61407237-61407256 None:intergenic 45.0%
! AAGTTTTGCGTGCACGTGAT+AGG + chr5_1:61407392-61407411 Msa0741710:CDS 45.0%
TGGTCGTTACATGCCTAGAA+TGG + chr5_1:61407432-61407451 Msa0741710:CDS 45.0%
TCGTTACATGCCTAGAATGG+CGG + chr5_1:61407435-61407454 Msa0741710:CDS 45.0%
TGCATTCTTACCGCCATTCT+AGG - chr5_1:61407448-61407467 None:intergenic 45.0%
ACAACGAGCTAATGATCAGG+AGG - chr5_1:61408000-61408019 None:intergenic 45.0%
GCTACAACGAGCTAATGATC+AGG - chr5_1:61408003-61408022 None:intergenic 45.0%
!! CTTTGGATCTGGCCTTGATA+AGG - chr5_1:61408222-61408241 None:intergenic 45.0%
GAAGATATGTCATCTGGGAG+TGG + chr5_1:61408427-61408446 Msa0741710:CDS 45.0%
GGTATGCGACATGTCCATAT+AGG - chr5_1:61408495-61408514 None:intergenic 45.0%
CCAAAAGGTTCCACTAAAGC+AGG - chr5_1:61408677-61408696 None:intergenic 45.0%
! CCTGCTTTAGTGGAACCTTT+TGG + chr5_1:61408674-61408693 Msa0741710:CDS 45.0%
!!! CCATTTTTAGTGGCCACCAT+TGG - chr5_1:61408820-61408839 None:intergenic 45.0%
CCAATGGTGGCCACTAAAAA+TGG + chr5_1:61408817-61408836 Msa0741710:CDS 45.0%
ATGGTGGCCACTAAAAATGG+TGG + chr5_1:61408820-61408839 Msa0741710:CDS 45.0%
!! AACCGGTCCACCATTTTTAG+TGG - chr5_1:61408830-61408849 None:intergenic 45.0%
GTGGACCGGTTGACATTAAT+CGG + chr5_1:61408839-61408858 Msa0741710:CDS 45.0%
TGGACCGGTTGACATTAATC+GGG + chr5_1:61408840-61408859 Msa0741710:CDS 45.0%
CCACAAGCAAACCATTGTTG+AGG - chr5_1:61408976-61408995 None:intergenic 45.0%
!! CCTCAACAATGGTTTGCTTG+TGG + chr5_1:61408973-61408992 Msa0741710:CDS 45.0%
! TGTTTCTGCACTCATGCCAT+AGG - chr5_1:61409057-61409076 None:intergenic 45.0%
TGGCATGAGTGCAGAAACAA+TGG + chr5_1:61409058-61409077 Msa0741710:CDS 45.0%
CCACGCGTGTCAAATAAGTT+CGG - chr5_1:61409123-61409142 None:intergenic 45.0%
! GTAGAATGAGGCATCCACAA+TGG + chr5_1:61409149-61409168 Msa0741710:CDS 45.0%
!! GGTGAATTTGCTGCATCAAG+CGG + chr5_1:61409268-61409287 Msa0741710:CDS 45.0%
TGCTCAAGACACGTTTCACT+TGG - chr5_1:61409309-61409328 None:intergenic 45.0%
CTGAAACTCTCGCAGTTTGA+GGG - chr5_1:61409522-61409541 None:intergenic 45.0%
GGGAGTGAAGTTTATTACCC+TGG + chr5_1:61409643-61409662 Msa0741710:CDS 45.0%
ACCGACACAGATTAAGTGCA+TGG + chr5_1:61409912-61409931 Msa0741710:intron 45.0%
ACGGTGCATTTGCCAAATCA+AGG + chr5_1:61409943-61409962 Msa0741710:intron 45.0%
GTGCATTTGCCAAATCAAGG+TGG + chr5_1:61409946-61409965 Msa0741710:intron 45.0%
!! CAAGGAAGGTTGATGACTTG+AGG + chr5_1:61410061-61410080 Msa0741710:CDS 45.0%
TTGCCATCCTATGTACTGCA+GGG + chr5_1:61410110-61410129 Msa0741710:CDS 45.0%
!! TGAGCTCTAGATGCAAGAAG+AGG - chr5_1:61410159-61410178 None:intergenic 45.0%
! TCTTCTTGCATCTAGAGCTC+AGG + chr5_1:61410158-61410177 Msa0741710:CDS 45.0%
TGTCATTCTTGGAGAAACCG+GGG + chr5_1:61410349-61410368 Msa0741710:CDS 45.0%
GAAGAATTGCTTAGAGGTCC+AGG + chr5_1:61410446-61410465 Msa0741710:CDS 45.0%
! TCATCTCTTTGGTAGCTTCC+TGG - chr5_1:61410467-61410486 None:intergenic 45.0%
!! GCAACAAGAGCACTCTCATT+TGG - chr5_1:61410497-61410516 None:intergenic 45.0%
!!! TTCATTTTTTTTAAAATATT+TGG - chr5_1:61408059-61408078 None:intergenic 5.0%
CGGTCGATAGTATAGCCTCA+AGG - chr5_1:61405438-61405457 None:intergenic 50.0%
ACAAGGACGTAGGGATGCAA+CGG + chr5_1:61406068-61406087 Msa0741710:CDS 50.0%
GGAGAAAAGGGAGATGGCAT+TGG + chr5_1:61406117-61406136 Msa0741710:CDS 50.0%
CGAGGAGAAAACATGGAGCT+TGG + chr5_1:61406632-61406651 Msa0741710:CDS 50.0%
TGCTCGTGCACTTGCGAAAA+CGG + chr5_1:61406775-61406794 Msa0741710:CDS 50.0%
TATTTGTCGCGTGGACCGAA+GGG - chr5_1:61406959-61406978 None:intergenic 50.0%
ATATTTGTCGCGTGGACCGA+AGG - chr5_1:61406960-61406979 None:intergenic 50.0%
! GTATTGGGCGAACAAGTTGG+CGG + chr5_1:61407058-61407077 Msa0741710:CDS 50.0%
CATGGACACTATGCTGATGC+TGG + chr5_1:61407109-61407128 Msa0741710:CDS 50.0%
! GACAGTGCTGCTCTTCTTTC+GGG + chr5_1:61407133-61407152 Msa0741710:CDS 50.0%
! GGGTGCTTTGAATGTGCCAA+TGG + chr5_1:61407153-61407172 Msa0741710:CDS 50.0%
AATGTGCCAATGGTGCTCAC+TGG + chr5_1:61407163-61407182 Msa0741710:CDS 50.0%
GAATGACCAGTGAGCACCAT+TGG - chr5_1:61407172-61407191 None:intergenic 50.0%
GTGCTCACTGGTCATTCACT+TGG + chr5_1:61407175-61407194 Msa0741710:CDS 50.0%
AGAAGCGGAAGAGCTTTCCT+TGG + chr5_1:61407282-61407301 Msa0741710:CDS 50.0%
GGAAGAGCTTTCCTTGGATG+CGG + chr5_1:61407288-61407307 Msa0741710:CDS 50.0%
! AGGCGTGGTGTCAATTGTCA+TGG + chr5_1:61407412-61407431 Msa0741710:CDS 50.0%
TTTCTGCAGGTTATCCCTCC+TGG + chr5_1:61407701-61407720 Msa0741710:intron 50.0%
TGCTGAAGTCCATACCAGGA+GGG - chr5_1:61407718-61407737 None:intergenic 50.0%
ACACTGCTGAAGTCCATACC+AGG - chr5_1:61407722-61407741 None:intergenic 50.0%
TGGTATGGACTTCAGCAGTG+TGG + chr5_1:61407721-61407740 Msa0741710:CDS 50.0%
!! AGAGATCTCCGTCGACTTCA+GGG - chr5_1:61407763-61407782 None:intergenic 50.0%
GGAGATCTCTCACAGCTTAC+TGG + chr5_1:61407773-61407792 Msa0741710:CDS 50.0%
GATCTCTCACAGCTTACTGG+TGG + chr5_1:61407776-61407795 Msa0741710:CDS 50.0%
TGTTGGAGCTCAAGTGTGAG+CGG + chr5_1:61407872-61407891 Msa0741710:intron 50.0%
!! GGCCACTAAAAATGGTGGAC+CGG + chr5_1:61408825-61408844 Msa0741710:CDS 50.0%
CCGAACTTATTTGACACGCG+TGG + chr5_1:61409120-61409139 Msa0741710:CDS 50.0%
GCGTGGATGCATGTAGAATG+AGG + chr5_1:61409137-61409156 Msa0741710:CDS 50.0%
!! GAATTTGCTGCATCAAGCGG+TGG + chr5_1:61409271-61409290 Msa0741710:CDS 50.0%
CCTGAAACTCTCGCAGTTTG+AGG - chr5_1:61409523-61409542 None:intergenic 50.0%
CCTCAAACTGCGAGAGTTTC+AGG + chr5_1:61409520-61409539 Msa0741710:CDS 50.0%
CGTCTTCTGTGTGAACACCA+GGG - chr5_1:61409663-61409682 None:intergenic 50.0%
CCTGGTGTTCACACAGAAGA+CGG + chr5_1:61409661-61409680 Msa0741710:CDS 50.0%
CTGGTGTTCACACAGAAGAC+GGG + chr5_1:61409662-61409681 Msa0741710:CDS 50.0%
!! GATTATCGTTGGGGCGTTGA+AGG + chr5_1:61409721-61409740 Msa0741710:CDS 50.0%
AGGCAAAAGCTTCGGATGAG+AGG + chr5_1:61410081-61410100 Msa0741710:CDS 50.0%
GTTGCCATCCTATGTACTGC+AGG + chr5_1:61410109-61410128 Msa0741710:CDS 50.0%
TGCCATCCTATGTACTGCAG+GGG + chr5_1:61410111-61410130 Msa0741710:CDS 50.0%
TTCCTCGTAATCAGTGTCCC+CGG - chr5_1:61410369-61410388 None:intergenic 50.0%
GAGCAAGCAAAAATACGGCC+CGG - chr5_1:61410726-61410745 None:intergenic 50.0%
GAGGCTATACTATCGACCGG+TGG + chr5_1:61405439-61405458 Msa0741710:CDS 55.0%
GCTATACTATCGACCGGTGG+TGG + chr5_1:61405442-61405461 Msa0741710:CDS 55.0%
CACCGTGGAAGAGCAGCAAA+GGG + chr5_1:61405474-61405493 Msa0741710:CDS 55.0%
CACCCTTTGCTGCTCTTCCA+CGG - chr5_1:61405479-61405498 None:intergenic 55.0%
! TCAGAGGCATGCTTCTAGCC+AGG + chr5_1:61406176-61406195 Msa0741710:CDS 55.0%
GTGCACTTGCGAAAACGGCA+GGG + chr5_1:61406780-61406799 Msa0741710:CDS 55.0%
TGCACTTGCGAAAACGGCAG+GGG + chr5_1:61406781-61406800 Msa0741710:CDS 55.0%
! ATGATAGCACCGGAGAGAGC+AGG + chr5_1:61406912-61406931 Msa0741710:CDS 55.0%
! TGATAGCACCGGAGAGAGCA+GGG + chr5_1:61406913-61406932 Msa0741710:CDS 55.0%
ATATGCACCCCTGCTCTCTC+CGG - chr5_1:61406924-61406943 None:intergenic 55.0%
!! TTAAGCAAGGGCGCCAATCG+TGG + chr5_1:61407221-61407240 Msa0741710:CDS 55.0%
!! TAAGCAAGGGCGCCAATCGT+GGG + chr5_1:61407222-61407241 Msa0741710:CDS 55.0%
GACAAGTTCTGCCGCATCCA+AGG - chr5_1:61407302-61407321 None:intergenic 55.0%
GCAGGTTATCCCTCCTGGTA+TGG + chr5_1:61407706-61407725 Msa0741710:intron 55.0%
CTGCTGAAGTCCATACCAGG+AGG - chr5_1:61407719-61407738 None:intergenic 55.0%
GAAGATGGCCCTGAAGTCGA+CGG + chr5_1:61407752-61407771 Msa0741710:CDS 55.0%
!! GAGAGATCTCCGTCGACTTC+AGG - chr5_1:61407764-61407783 None:intergenic 55.0%
! CAGCTTACTGGTGGTGCTGA+TGG + chr5_1:61407785-61407804 Msa0741710:CDS 55.0%
! AGCTGCACATGGACTGCCAA+TGG + chr5_1:61408801-61408820 Msa0741710:CDS 55.0%
! TGCACATGGACTGCCAATGG+TGG + chr5_1:61408804-61408823 Msa0741710:CDS 55.0%
AGTGTTCAGGCCACGAGAAC+AGG - chr5_1:61409099-61409118 None:intergenic 55.0%
CTGCGCCTTCGCCTTAATAG+AGG - chr5_1:61409400-61409419 None:intergenic 55.0%
! CTCTATTAAGGCGAAGGCGC+AGG + chr5_1:61409398-61409417 Msa0741710:CDS 55.0%
CCGTCTTCTGTGTGAACACC+AGG - chr5_1:61409664-61409683 None:intergenic 55.0%
GCCATCCTATGTACTGCAGG+GGG + chr5_1:61410112-61410131 Msa0741710:CDS 55.0%
ACCCCCTGCAGTACATAGGA+TGG - chr5_1:61410116-61410135 None:intergenic 55.0%
GAAGACCCCCTGCAGTACAT+AGG - chr5_1:61410120-61410139 None:intergenic 55.0%
! AACCGGGGACACTGATTACG+AGG + chr5_1:61410364-61410383 Msa0741710:CDS 55.0%
AGAGGTCGGGGTTCGAACAT+CGG - chr5_1:61410836-61410855 None:intergenic 55.0%
!! GGTGGTAGAAGCACCACCAC+CGG - chr5_1:61405458-61405477 None:intergenic 60.0%
! TGGTGGTGCTTCTACCACCG+TGG + chr5_1:61405459-61405478 Msa0741710:CDS 60.0%
CCTTTGCTGCTCTTCCACGG+TGG - chr5_1:61405476-61405495 None:intergenic 60.0%
CCACCGTGGAAGAGCAGCAA+AGG + chr5_1:61405473-61405492 Msa0741710:CDS 60.0%
CGTGGAAGAGCAGCAAAGGG+TGG + chr5_1:61405477-61405496 Msa0741710:CDS 60.0%
GGAAGAGCAGCAAAGGGTGG+CGG + chr5_1:61405480-61405499 Msa0741710:CDS 60.0%
GCGGCTGCAGCTAGAGAAAG+TGG + chr5_1:61405499-61405518 Msa0741710:CDS 60.0%
AGGACGTAGGGATGCAACGG+AGG + chr5_1:61406071-61406090 Msa0741710:CDS 60.0%
CGTGCACTTGCGAAAACGGC+AGG + chr5_1:61406779-61406798 Msa0741710:CDS 60.0%
! GATAGCACCGGAGAGAGCAG+GGG + chr5_1:61406914-61406933 Msa0741710:CDS 60.0%
! TTGGGCGAACAAGTTGGCGG+TGG + chr5_1:61407061-61407080 Msa0741710:CDS 60.0%
TTGGCGGTGGACAACCTGTG+TGG + chr5_1:61407074-61407093 Msa0741710:CDS 60.0%
TTGCGTGCACGTGATAGGCG+TGG + chr5_1:61407397-61407416 Msa0741710:CDS 60.0%
CTCACTCAGGCAGCTGCACA+TGG + chr5_1:61408790-61408809 Msa0741710:intron 60.0%
CACGGCGAGCCACCTTGATT+TGG - chr5_1:61409958-61409977 None:intergenic 60.0%
!! GCAAGGGCGCCAATCGTGGG+AGG + chr5_1:61407225-61407244 Msa0741710:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 61405183 61410857 61405183 ID=Msa0741710;Name=Msa0741710
chr5_1 mRNA 61405183 61410857 61405183 ID=Msa0741710-mRNA-1;Parent=Msa0741710;Name=Msa0741710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=200|1|1|1|0.91|0.84|13|268|1057
chr5_1 exon 61405183 61405329 61405183 ID=Msa0741710-mRNA-1:exon:17776;Parent=Msa0741710-mRNA-1
chr5_1 exon 61405353 61405696 61405353 ID=Msa0741710-mRNA-1:exon:17777;Parent=Msa0741710-mRNA-1
chr5_1 exon 61406018 61406250 61406018 ID=Msa0741710-mRNA-1:exon:17778;Parent=Msa0741710-mRNA-1
chr5_1 exon 61406616 61406679 61406616 ID=Msa0741710-mRNA-1:exon:17779;Parent=Msa0741710-mRNA-1
chr5_1 exon 61406755 61407456 61406755 ID=Msa0741710-mRNA-1:exon:17780;Parent=Msa0741710-mRNA-1
chr5_1 exon 61407710 61407844 61407710 ID=Msa0741710-mRNA-1:exon:17781;Parent=Msa0741710-mRNA-1
chr5_1 exon 61408176 61408307 61408176 ID=Msa0741710-mRNA-1:exon:17782;Parent=Msa0741710-mRNA-1
chr5_1 exon 61408397 61408573 61408397 ID=Msa0741710-mRNA-1:exon:17783;Parent=Msa0741710-mRNA-1
chr5_1 exon 61408659 61408712 61408659 ID=Msa0741710-mRNA-1:exon:17784;Parent=Msa0741710-mRNA-1
chr5_1 exon 61408799 61408861 61408799 ID=Msa0741710-mRNA-1:exon:17785;Parent=Msa0741710-mRNA-1
chr5_1 exon 61408971 61409882 61408971 ID=Msa0741710-mRNA-1:exon:17786;Parent=Msa0741710-mRNA-1
chr5_1 exon 61410060 61410187 61410060 ID=Msa0741710-mRNA-1:exon:17787;Parent=Msa0741710-mRNA-1
chr5_1 exon 61410307 61410857 61410307 ID=Msa0741710-mRNA-1:exon:17788;Parent=Msa0741710-mRNA-1
chr5_1 five_prime_UTR 61405183 61405329 61405183 ID=Msa0741710-mRNA-1:five_prime_utr;Parent=Msa0741710-mRNA-1
chr5_1 five_prime_UTR 61405353 61405405 61405353 ID=Msa0741710-mRNA-1:five_prime_utr;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61405406 61405696 61405406 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61406018 61406250 61406018 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61406616 61406679 61406616 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61406755 61407456 61406755 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61407710 61407844 61407710 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61408176 61408307 61408176 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61408397 61408573 61408397 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61408659 61408712 61408659 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61408799 61408861 61408799 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61408971 61409882 61408971 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61410060 61410187 61410060 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 CDS 61410307 61410589 61410307 ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1 three_prime_UTR 61410590 61410857 61410590 ID=Msa0741710-mRNA-1:three_prime_utr;Parent=Msa0741710-mRNA-1
Gene Sequence

>Msa0741710

ATGGCTGGTAATGAGTGGATTAATGGCTACCTTGAGGCTATACTATCGACCGGTGGTGGTGCTTCTACCACCGTGGAAGAGCAGCAAAGGGTGGCGGCTGCAGCTAGAGAAAGTGGTGATCATTTCAATCCAACAAAATATTTTGTTGAAGAAGTAGTGAGTGCTGTTGATGAGTCTGATCTTCATCGTACATGGCTTAAGGTTGTTGCCACTCGTAATACAAGGGAACGTAGCTCAAGACTCGAGAACATGTGTTGGCGTATTTGGCATCTTGCTCGCAAGAAGAAGAAGGTGGAAGGAGAAGAACTTCAAAGGTTAGCATACAGAAGATGGGAAATAGAACAAGGACGTAGGGATGCAACGGAGGATTTGTCTGAAGAGTTGTCAGAAGGAGAAAAGGGAGATGGCATTGGGGAGATAGTACAAATTGAGACTCAACAGAAAAAACTTCAGAGGCATGCTTCTAGCCAGGAAATATGGTCTGATGACAAAAAGGAAAAGAAACTTTATATTATCCTCTTAAGTTTGCATGGATTGGTACGAGGAGAAAACATGGAGCTTGGTAGAGATTCTGATACTGGTGGACAGATTAAATATGTGGTAGAACTTGCTCGTGCACTTGCGAAAACGGCAGGGGTATATAGAGTAGATCTCTTCACGCGCCAAATATCATCTCCTGATATTGATTGGAGCTATGGAGAACCTACAGAAATGCTATCTGCAGGTCCAGATGATAATGATGAGGATGATAGCACCGGAGAGAGCAGGGGTGCATATATCATAAGAATACCCTTCGGTCCACGCGACAAATATCTCGAGAAAGAACTTCTTTGGCCTCACATTCAAGAATTTGTAGATGGAGCCTTAGCTCACATTCTCAACATGTCAAAAGTATTGGGCGAACAAGTTGGCGGTGGACAACCTGTGTGGCCTTATGTGATTCATGGACACTATGCTGATGCTGGTGACAGTGCTGCTCTTCTTTCGGGTGCTTTGAATGTGCCAATGGTGCTCACTGGTCATTCACTTGGAAGAAACAAACTAGAACAACTTCTTAAGCAAGGGCGCCAATCGTGGGAGGATATCAACTCAACGTATAAGATAATGAGAAGGATAGAAGCGGAAGAGCTTTCCTTGGATGCGGCAGAACTTGTCATCACTAGTACAAGACAAGAAATTGATGAACAATGGGGACTTTATGATGGGTTTGATGTCAAACTTGAGAAAGTTTTGCGTGCACGTGATAGGCGTGGTGTCAATTGTCATGGTCGTTACATGCCTAGAATGGCGGTTATCCCTCCTGGTATGGACTTCAGCAGTGTGGTGATACAAGAAGATGGCCCTGAAGTCGACGGAGATCTCTCACAGCTTACTGGTGGTGCTGATGGATCTTCACCAAAAGCTTTACCTTCAATTTGGTTAGAAGTGATGCGTTTTTTCACAAATCCTCACAAGCCTATGATATTAGCCTTATCAAGGCCAGATCCAAAGAAGAACATAACAACTCTATTAAAGGCTTTTGGAGAAAATCGTTCCTTGAGAAAACTAGCTAATCTTACCCTTATAATGGGAAACAGAGATGACATAGAAGATATGTCATCTGGGAGTGGCAGTGTTCTCACAACTGTGTTGAAACTGATTGACAAATATGACCTATATGGACATGTCGCATACCCTAAACATCATAGACAATCTGATGTACCTGAGATATATAGATTTGCTGCTAAAACAAAGGGGGTTTTCATAAATCCTGCTTTAGTGGAACCTTTTGGTCTTACTTTAATTGAGGCAGCTGCACATGGACTGCCAATGGTGGCCACTAAAAATGGTGGACCGGTTGACATTAATCGGGCCCTCAACAATGGTTTGCTTGTGGACCCTCATGATCATCAAGCAATTGCTGATGCATTACTCAAGTTGTTATCAGAGAAAAACCTATGGCATGAGTGCAGAAACAATGGTTGGAAGAATATACACCTGTTCTCGTGGCCTGAACACTGCCGAACTTATTTGACACGCGTGGATGCATGTAGAATGAGGCATCCACAATGGCAAACTACTACTACTGAAGATGATGTAGATGTTGAAGAGTCTTTCAATGATTCACTTAAGGATGTTCAGGACATGTCACTTAGGCTTTCAATTGATGGTGAATTTGCTGCATCAAGCGGTGGCAGTAACGAAGACCAAGTGAAACGTGTCTTGAGCAAGATAAGGAAGCAAGATTCTGGTTCAAATCATGAGAACATGTTGCTTGATAATGTATCAAACAAATATCCTCTATTAAGGCGAAGGCGCAGGTTGATTGTTATAGCACTTGATTCCTATGACAGTAATGGAGATCCTGATAAGAAGTTGATTGAGATAGTTCAAAGGATAATTAAAGCTGTTCAATTAGACCCTCAAACTGCGAGAGTTTCAGGATTCGCTTTGTTGACTGCTATGACAATGCAAGAAACAACTCAATTTCTAGCATCCGGAAATGTTCAAGTGAATGAATTTGATGCTATAGTTTGTAGTAGTGGGAGTGAAGTTTATTACCCTGGTGTTCACACAGAAGACGGGAAGCTTTTGCCTGATCAAGATTATTCAGTACATATAGATTATCGTTGGGGCGTTGAAGGTCTAAAGAATACAATTTGTAAACTTATGAATGCCTCTAATGGTGAAGAGACTAATGGAATAGCAACTAGTCCTCTTGAGGAAGATTTGAAGTCTAGTAACGCACATTGCATTTCATACAAAATAAATGATCCTAGCAAGGCAAGGAAGGTTGATGACTTGAGGCAAAAGCTTCGGATGAGAGGTCTACGTTGCCATCCTATGTACTGCAGGGGGTCTTCTAGAATGCATGTTATTCCTCTTCTTGCATCTAGAGCTCAGGCACTCAGGTATTTGTTCGTCCGTTGGAGATTAAATGTTGCAAACATGTATGTCATTCTTGGAGAAACCGGGGACACTGATTACGAGGAAATGATTTCTGGAACACACAAGACTATAATCATGAAAGGAGTTGTGTCTAAGGGTTCAGAAGAATTGCTTAGAGGTCCAGGAAGCTACCAAAGAGATGATGTTGTACCAAATGAGAGTGCTCTTGTTGCATGCATTAGTGAAACAACAGAGGAAAATATTGCCAATGCATTGAAGCAACTTTCAAAATCTGGAGGAATATGA
Protein sequence

>Msa0741710

MAGNEWINGYLEAILSTGGGASTTVEEQQRVAAAARESGDHFNPTKYFVEEVVSAVDESDLHRTWLKVVATRNTRERSSRLENMCWRIWHLARKKKKVEGEELQRLAYRRWEIEQGRRDATEDLSEELSEGEKGDGIGEIVQIETQQKKLQRHASSQEIWSDDKKEKKLYIILLSLHGLVRGENMELGRDSDTGGQIKYVVELARALAKTAGVYRVDLFTRQISSPDIDWSYGEPTEMLSAGPDDNDEDDSTGESRGAYIIRIPFGPRDKYLEKELLWPHIQEFVDGALAHILNMSKVLGEQVGGGQPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQSWEDINSTYKIMRRIEAEELSLDAAELVITSTRQEIDEQWGLYDGFDVKLEKVLRARDRRGVNCHGRYMPRMAVIPPGMDFSSVVIQEDGPEVDGDLSQLTGGADGSSPKALPSIWLEVMRFFTNPHKPMILALSRPDPKKNITTLLKAFGENRSLRKLANLTLIMGNRDDIEDMSSGSGSVLTTVLKLIDKYDLYGHVAYPKHHRQSDVPEIYRFAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDINRALNNGLLVDPHDHQAIADALLKLLSEKNLWHECRNNGWKNIHLFSWPEHCRTYLTRVDACRMRHPQWQTTTTEDDVDVEESFNDSLKDVQDMSLRLSIDGEFAASSGGSNEDQVKRVLSKIRKQDSGSNHENMLLDNVSNKYPLLRRRRRLIVIALDSYDSNGDPDKKLIEIVQRIIKAVQLDPQTARVSGFALLTAMTMQETTQFLASGNVQVNEFDAIVCSSGSEVYYPGVHTEDGKLLPDQDYSVHIDYRWGVEGLKNTICKLMNASNGEETNGIATSPLEEDLKSSNAHCISYKINDPSKARKVDDLRQKLRMRGLRCHPMYCRGSSRMHVIPLLASRAQALRYLFVRWRLNVANMYVILGETGDTDYEEMISGTHKTIIMKGVVSKGSEELLRGPGSYQRDDVVPNESALVACISETTEENIANALKQLSKSGGI*