AlfalfaGEDB | Msa0741710

M. sativa cultivar zhongmu-4 / Msa0741710

KEGG: K00696
GO: GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0008194 GO:0012505 GO:0016740 GO:0016757 GO:0016758 GO:0035251 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046524 GO:0046527
PFAM: PF00862.22

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741710	XP_003617418.1	98.488	1058	15	1	1	1057	1	1058	0.0	2155

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741710	sp\|Q8RY24\|SPSA3_ARATH	73.196	1067	266	11	1	1054	1	1060	0.0	1602

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741710	G7KD49	98.488	1058	15	1	1	1057	1	1058	0.0	2155

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0000220	Msa0741710	0.861367	1.078284e-63	-8.615850e-47
Msa0000610	Msa0741710	0.835155	1.978066e-56	-8.615850e-47
Msa0001040	Msa0741710	0.871057	9.131551e-67	-8.615850e-47
Msa0001510	Msa0741710	0.821556	3.791677e-53	-8.615850e-47
Msa0002110	Msa0741710	0.810244	1.269073e-50	-8.615850e-47
Msa0002690	Msa0741710	0.852910	3.385904e-61	-8.615850e-47
Msa0002700	Msa0741710	0.856572	2.939010e-62	-8.615850e-47
Msa0003340	Msa0741710	0.847429	1.163051e-59	-8.615850e-47
Msa0003450	Msa0741710	0.826531	2.578030e-54	-8.615850e-47
Msa0004180	Msa0741710	0.814697	1.350175e-51	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741710	MtrunA17_Chr5g0443091	98.488	1058	15	1	1	1057	1	1058	0.0	2155
Msa0741710	MtrunA17_Chr3g0096241	81.096	1058	186	7	1	1056	1	1046	0.0	1764
Msa0741710	MtrunA17_Chr4g0064501	56.308	1078	412	20	1	1048	1	1049	0.0	1145
Msa0741710	MtrunA17_Chr3g0109841	27.437	554	319	21	171	693	286	787	3.51e-41	164
Msa0741710	MtrunA17_Chr1g0195241	26.015	542	332	19	171	688	264	760	2.36e-37	151
Msa0741710	MtrunA17_Chr6g0481131	26.437	522	320	19	171	677	285	757	2.50e-37	152
Msa0741710	MtrunA17_Chr6g0481171	26.245	522	321	19	171	677	157	629	7.76e-37	149
Msa0741710	MtrunA17_Chr2g0301621	25.898	529	320	20	171	672	277	760	1.61e-36	149
Msa0741710	MtrunA17_Chr5g0433761	25.725	517	319	18	171	663	283	758	1.59e-35	145
Msa0741710	MtrunA17_Chr4g0070011	25.331	529	323	20	171	672	279	762	1.60e-34	142

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0741710	AT1G04920.1	73.196	1067	266	11	1	1054	1	1060	0.0	1602
Msa0741710	AT4G10120.2	57.049	1071	391	13	1	1039	1	1034	0.0	1188
Msa0741710	AT4G10120.3	57.049	1071	391	13	1	1039	1	1034	0.0	1188
Msa0741710	AT4G10120.1	57.049	1071	391	13	1	1039	1	1034	0.0	1188
Msa0741710	AT5G20280.1	56.808	1065	419	18	1	1051	1	1038	0.0	1172
Msa0741710	AT5G11110.1	55.649	1071	430	16	1	1054	1	1043	0.0	1143
Msa0741710	AT4G10120.4	58.705	896	326	10	150	1038	1	859	0.0	1038
Msa0741710	AT4G10120.5	59.033	869	313	9	176	1038	1	832	0.0	1014
Msa0741710	AT1G73370.2	26.769	523	306	17	171	663	241	716	1.33e-38	156
Msa0741710	AT5G49190.3	25.714	525	327	16	171	672	212	696	1.36e-38	155

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Find 265 sgRNAs with CRISPR-Local

Find 365 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTATGAATGCCTCTAA+TGG	0.444514	5_1:+61409763	Msa0741710:CDS
AAAGGTTAGCATACAGAAGA+TGG	0.439924	5_1:+61406037	Msa0741710:CDS
AAAGTATTGGGCGAACAAGT+TGG	0.553972	5_1:+61407055	Msa0741710:CDS
AAATAAGTTCGGCAGTGTTC+AGG	0.443986	5_1:-61409109	None:intergenic
AACAATGGGGACTTTATGAT+GGG	0.512391	5_1:+61407350	Msa0741710:CDS
AACCGGGGACACTGATTACG+AGG	0.645232	5_1:+61410364	Msa0741710:CDS
AACGTGTCTTGAGCAAGATA+AGG	0.573873	5_1:+61409314	Msa0741710:CDS
AACTTTATATTATCCTCTTA+AGG	0.347172	5_1:+61406229	Msa0741710:CDS
AAGATAAGGAAGCAAGATTC+TGG	0.444052	5_1:+61409328	Msa0741710:CDS
AAGCAACTTTCAAAATCTGG+AGG	0.616780	5_1:+61410560	Msa0741710:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
AATATGGTCTGATGACAAAA+AGG	+	chr5_1:61406200-61406219	Msa0741710:CDS	30.0%
GCTTGTACAATAAACACTTA+TGG	-	chr5_1:61406307-61406326	None:intergenic	30.0%
GCTATTTGCAATTGTTATCA+TGG	+	chr5_1:61406372-61406391	Msa0741710:intron	30.0%
TTGAGGTGAACAAAGAATAA+GGG	-	chr5_1:61406485-61406504	None:intergenic	30.0%
TTTATACAGTTTGCATGGAT+TGG	+	chr5_1:61406607-61406626	Msa0741710:intron	30.0%
CAATATCAGGAGATGATATT+TGG	-	chr5_1:61406832-61406851	None:intergenic	30.0%
TATCATCTCCTGATATTGAT+TGG	+	chr5_1:61406834-61406853	Msa0741710:CDS	30.0%
TCTACAAATTCTTGAATGTG+AGG	-	chr5_1:61407004-61407023	None:intergenic	30.0%
CACATTCAAGAATTTGTAGA+TGG	+	chr5_1:61407004-61407023	Msa0741710:CDS	30.0%
TAGAACAACTTCTTAAGCAA+GGG	+	chr5_1:61407209-61407228	Msa0741710:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	61405183	61410857	61405183	ID=Msa0741710;Name=Msa0741710
chr5_1	mRNA	61405183	61410857	61405183	ID=Msa0741710-mRNA-1;Parent=Msa0741710;Name=Msa0741710-mRNA-1;_AED=0.07;_eAED=0.07;_QI=200\|1\|1\|1\|0.91\|0.84\|13\|268\|1057
chr5_1	exon	61405183	61405329	61405183	ID=Msa0741710-mRNA-1:exon:17776;Parent=Msa0741710-mRNA-1
chr5_1	exon	61405353	61405696	61405353	ID=Msa0741710-mRNA-1:exon:17777;Parent=Msa0741710-mRNA-1
chr5_1	exon	61406018	61406250	61406018	ID=Msa0741710-mRNA-1:exon:17778;Parent=Msa0741710-mRNA-1
chr5_1	exon	61406616	61406679	61406616	ID=Msa0741710-mRNA-1:exon:17779;Parent=Msa0741710-mRNA-1
chr5_1	exon	61406755	61407456	61406755	ID=Msa0741710-mRNA-1:exon:17780;Parent=Msa0741710-mRNA-1
chr5_1	exon	61407710	61407844	61407710	ID=Msa0741710-mRNA-1:exon:17781;Parent=Msa0741710-mRNA-1
chr5_1	exon	61408176	61408307	61408176	ID=Msa0741710-mRNA-1:exon:17782;Parent=Msa0741710-mRNA-1
chr5_1	exon	61408397	61408573	61408397	ID=Msa0741710-mRNA-1:exon:17783;Parent=Msa0741710-mRNA-1
chr5_1	exon	61408659	61408712	61408659	ID=Msa0741710-mRNA-1:exon:17784;Parent=Msa0741710-mRNA-1
chr5_1	exon	61408799	61408861	61408799	ID=Msa0741710-mRNA-1:exon:17785;Parent=Msa0741710-mRNA-1
chr5_1	exon	61408971	61409882	61408971	ID=Msa0741710-mRNA-1:exon:17786;Parent=Msa0741710-mRNA-1
chr5_1	exon	61410060	61410187	61410060	ID=Msa0741710-mRNA-1:exon:17787;Parent=Msa0741710-mRNA-1
chr5_1	exon	61410307	61410857	61410307	ID=Msa0741710-mRNA-1:exon:17788;Parent=Msa0741710-mRNA-1
chr5_1	five_prime_UTR	61405183	61405329	61405183	ID=Msa0741710-mRNA-1:five_prime_utr;Parent=Msa0741710-mRNA-1
chr5_1	five_prime_UTR	61405353	61405405	61405353	ID=Msa0741710-mRNA-1:five_prime_utr;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61405406	61405696	61405406	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61406018	61406250	61406018	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61406616	61406679	61406616	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61406755	61407456	61406755	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61407710	61407844	61407710	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61408176	61408307	61408176	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61408397	61408573	61408397	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61408659	61408712	61408659	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61408799	61408861	61408799	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61408971	61409882	61408971	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61410060	61410187	61410060	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	CDS	61410307	61410589	61410307	ID=Msa0741710-mRNA-1:cds;Parent=Msa0741710-mRNA-1
chr5_1	three_prime_UTR	61410590	61410857	61410590	ID=Msa0741710-mRNA-1:three_prime_utr;Parent=Msa0741710-mRNA-1

Gene Sequence

>Msa0741710

ATGGCTGGTAATGAGTGGATTAATGGCTACCTTGAGGCTATACTATCGACCGGTGGTGGTGCTTCTACCACCGTGGAAGAGCAGCAAAGGGTGGCGGCTGCAGCTAGAGAAAGTGGTGATCATTTCAATCCAACAAAATATTTTGTTGAAGAAGTAGTGAGTGCTGTTGATGAGTCTGATCTTCATCGTACATGGCTTAAGGTTGTTGCCACTCGTAATACAAGGGAACGTAGCTCAAGACTCGAGAACATGTGTTGGCGTATTTGGCATCTTGCTCGCAAGAAGAAGAAGGTGGAAGGAGAAGAACTTCAAAGGTTAGCATACAGAAGATGGGAAATAGAACAAGGACGTAGGGATGCAACGGAGGATTTGTCTGAAGAGTTGTCAGAAGGAGAAAAGGGAGATGGCATTGGGGAGATAGTACAAATTGAGACTCAACAGAAAAAACTTCAGAGGCATGCTTCTAGCCAGGAAATATGGTCTGATGACAAAAAGGAAAAGAAACTTTATATTATCCTCTTAAGTTTGCATGGATTGGTACGAGGAGAAAACATGGAGCTTGGTAGAGATTCTGATACTGGTGGACAGATTAAATATGTGGTAGAACTTGCTCGTGCACTTGCGAAAACGGCAGGGGTATATAGAGTAGATCTCTTCACGCGCCAAATATCATCTCCTGATATTGATTGGAGCTATGGAGAACCTACAGAAATGCTATCTGCAGGTCCAGATGATAATGATGAGGATGATAGCACCGGAGAGAGCAGGGGTGCATATATCATAAGAATACCCTTCGGTCCACGCGACAAATATCTCGAGAAAGAACTTCTTTGGCCTCACATTCAAGAATTTGTAGATGGAGCCTTAGCTCACATTCTCAACATGTCAAAAGTATTGGGCGAACAAGTTGGCGGTGGACAACCTGTGTGGCCTTATGTGATTCATGGACACTATGCTGATGCTGGTGACAGTGCTGCTCTTCTTTCGGGTGCTTTGAATGTGCCAATGGTGCTCACTGGTCATTCACTTGGAAGAAACAAACTAGAACAACTTCTTAAGCAAGGGCGCCAATCGTGGGAGGATATCAACTCAACGTATAAGATAATGAGAAGGATAGAAGCGGAAGAGCTTTCCTTGGATGCGGCAGAACTTGTCATCACTAGTACAAGACAAGAAATTGATGAACAATGGGGACTTTATGATGGGTTTGATGTCAAACTTGAGAAAGTTTTGCGTGCACGTGATAGGCGTGGTGTCAATTGTCATGGTCGTTACATGCCTAGAATGGCGGTTATCCCTCCTGGTATGGACTTCAGCAGTGTGGTGATACAAGAAGATGGCCCTGAAGTCGACGGAGATCTCTCACAGCTTACTGGTGGTGCTGATGGATCTTCACCAAAAGCTTTACCTTCAATTTGGTTAGAAGTGATGCGTTTTTTCACAAATCCTCACAAGCCTATGATATTAGCCTTATCAAGGCCAGATCCAAAGAAGAACATAACAACTCTATTAAAGGCTTTTGGAGAAAATCGTTCCTTGAGAAAACTAGCTAATCTTACCCTTATAATGGGAAACAGAGATGACATAGAAGATATGTCATCTGGGAGTGGCAGTGTTCTCACAACTGTGTTGAAACTGATTGACAAATATGACCTATATGGACATGTCGCATACCCTAAACATCATAGACAATCTGATGTACCTGAGATATATAGATTTGCTGCTAAAACAAAGGGGGTTTTCATAAATCCTGCTTTAGTGGAACCTTTTGGTCTTACTTTAATTGAGGCAGCTGCACATGGACTGCCAATGGTGGCCACTAAAAATGGTGGACCGGTTGACATTAATCGGGCCCTCAACAATGGTTTGCTTGTGGACCCTCATGATCATCAAGCAATTGCTGATGCATTACTCAAGTTGTTATCAGAGAAAAACCTATGGCATGAGTGCAGAAACAATGGTTGGAAGAATATACACCTGTTCTCGTGGCCTGAACACTGCCGAACTTATTTGACACGCGTGGATGCATGTAGAATGAGGCATCCACAATGGCAAACTACTACTACTGAAGATGATGTAGATGTTGAAGAGTCTTTCAATGATTCACTTAAGGATGTTCAGGACATGTCACTTAGGCTTTCAATTGATGGTGAATTTGCTGCATCAAGCGGTGGCAGTAACGAAGACCAAGTGAAACGTGTCTTGAGCAAGATAAGGAAGCAAGATTCTGGTTCAAATCATGAGAACATGTTGCTTGATAATGTATCAAACAAATATCCTCTATTAAGGCGAAGGCGCAGGTTGATTGTTATAGCACTTGATTCCTATGACAGTAATGGAGATCCTGATAAGAAGTTGATTGAGATAGTTCAAAGGATAATTAAAGCTGTTCAATTAGACCCTCAAACTGCGAGAGTTTCAGGATTCGCTTTGTTGACTGCTATGACAATGCAAGAAACAACTCAATTTCTAGCATCCGGAAATGTTCAAGTGAATGAATTTGATGCTATAGTTTGTAGTAGTGGGAGTGAAGTTTATTACCCTGGTGTTCACACAGAAGACGGGAAGCTTTTGCCTGATCAAGATTATTCAGTACATATAGATTATCGTTGGGGCGTTGAAGGTCTAAAGAATACAATTTGTAAACTTATGAATGCCTCTAATGGTGAAGAGACTAATGGAATAGCAACTAGTCCTCTTGAGGAAGATTTGAAGTCTAGTAACGCACATTGCATTTCATACAAAATAAATGATCCTAGCAAGGCAAGGAAGGTTGATGACTTGAGGCAAAAGCTTCGGATGAGAGGTCTACGTTGCCATCCTATGTACTGCAGGGGGTCTTCTAGAATGCATGTTATTCCTCTTCTTGCATCTAGAGCTCAGGCACTCAGGTATTTGTTCGTCCGTTGGAGATTAAATGTTGCAAACATGTATGTCATTCTTGGAGAAACCGGGGACACTGATTACGAGGAAATGATTTCTGGAACACACAAGACTATAATCATGAAAGGAGTTGTGTCTAAGGGTTCAGAAGAATTGCTTAGAGGTCCAGGAAGCTACCAAAGAGATGATGTTGTACCAAATGAGAGTGCTCTTGTTGCATGCATTAGTGAAACAACAGAGGAAAATATTGCCAATGCATTGAAGCAACTTTCAAAATCTGGAGGAATATGA

Protein sequence

>Msa0741710

MAGNEWINGYLEAILSTGGGASTTVEEQQRVAAAARESGDHFNPTKYFVEEVVSAVDESDLHRTWLKVVATRNTRERSSRLENMCWRIWHLARKKKKVEGEELQRLAYRRWEIEQGRRDATEDLSEELSEGEKGDGIGEIVQIETQQKKLQRHASSQEIWSDDKKEKKLYIILLSLHGLVRGENMELGRDSDTGGQIKYVVELARALAKTAGVYRVDLFTRQISSPDIDWSYGEPTEMLSAGPDDNDEDDSTGESRGAYIIRIPFGPRDKYLEKELLWPHIQEFVDGALAHILNMSKVLGEQVGGGQPVWPYVIHGHYADAGDSAALLSGALNVPMVLTGHSLGRNKLEQLLKQGRQSWEDINSTYKIMRRIEAEELSLDAAELVITSTRQEIDEQWGLYDGFDVKLEKVLRARDRRGVNCHGRYMPRMAVIPPGMDFSSVVIQEDGPEVDGDLSQLTGGADGSSPKALPSIWLEVMRFFTNPHKPMILALSRPDPKKNITTLLKAFGENRSLRKLANLTLIMGNRDDIEDMSSGSGSVLTTVLKLIDKYDLYGHVAYPKHHRQSDVPEIYRFAAKTKGVFINPALVEPFGLTLIEAAAHGLPMVATKNGGPVDINRALNNGLLVDPHDHQAIADALLKLLSEKNLWHECRNNGWKNIHLFSWPEHCRTYLTRVDACRMRHPQWQTTTTEDDVDVEESFNDSLKDVQDMSLRLSIDGEFAASSGGSNEDQVKRVLSKIRKQDSGSNHENMLLDNVSNKYPLLRRRRRLIVIALDSYDSNGDPDKKLIEIVQRIIKAVQLDPQTARVSGFALLTAMTMQETTQFLASGNVQVNEFDAIVCSSGSEVYYPGVHTEDGKLLPDQDYSVHIDYRWGVEGLKNTICKLMNASNGEETNGIATSPLEEDLKSSNAHCISYKINDPSKARKVDDLRQKLRMRGLRCHPMYCRGSSRMHVIPLLASRAQALRYLFVRWRLNVANMYVILGETGDTDYEEMISGTHKTIIMKGVVSKGSEELLRGPGSYQRDDVVPNESALVACISETTEENIANALKQLSKSGGI*