AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0816860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816860 MtrunA17_Chr5g0435631 95.859 483 13 1 1 483 1 476 0.0 962
Msa0816860 MtrunA17_Chr4g0009431 80.579 484 84 3 1 482 1 476 0.0 817
Msa0816860 MtrunA17_Chr3g0112121 87.387 444 47 3 1 443 1 436 0.0 806
Msa0816860 MtrunA17_Chr2g0334101 48.555 346 164 9 89 426 75 414 1.12e-107 326
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0816860 AT2G39730.1 78.882 483 92 3 1 482 1 474 0.0 796
Msa0816860 AT2G39730.2 78.049 451 89 3 1 450 1 442 0.0 733
Msa0816860 AT2G39730.3 78.747 447 85 3 1 446 1 438 0.0 731
Msa0816860 AT1G73110.2 55.593 295 122 7 139 426 39 331 1.17e-111 333
Msa0816860 AT1G73110.1 52.866 314 137 8 120 426 119 428 2.77e-110 333

Find 123 sgRNAs with CRISPR-Local

Find 290 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCCTCTAATTCTTGGTATC+TGG 0.183651 5_3:+51631775 Msa0816860:CDS
TAGAGAAATGTGTATTGTTT+TGG 0.228371 5_3:-51630077 None:intergenic
TTATCATCTTGTTAAAATAT+TGG 0.242167 5_3:+51634772 Msa0816860:three_prime_UTR
TCAATTGGCAGACAAGTATT+TGG 0.252747 5_3:+51633456 Msa0816860:CDS
CTTCAGGTTCCTCTAATTCT+TGG 0.267602 5_3:+51631768 Msa0816860:intron
AAATTACATGCCTTGATATT+AGG 0.286542 5_3:-51631481 None:intergenic
GTTCCAAGTTCATCATTCTT+TGG 0.302261 5_3:+51630819 Msa0816860:CDS
AAAAGTTGGAGGTCCTTCTT+TGG 0.306483 5_3:-51633353 None:intergenic
CTAAGCAGTCATTAGGTTAA+AGG 0.316355 5_3:+51634712 Msa0816860:three_prime_UTR
CCAGATGAAACCTTTGTGTT+TGG 0.318881 5_3:-51630873 None:intergenic
TTGGAGAAATTGTTGGAGTA+TGG 0.319474 5_3:+51633394 Msa0816860:CDS
CCAATACGATCTTCTCTTGT+AGG 0.327862 5_3:-51632921 None:intergenic
CAATTTCTCCAAAGTCATCT+TGG 0.340644 5_3:-51633383 None:intergenic
CCAACAAATGTTCAACTTCC+TGG 0.344096 5_3:+51632783 Msa0816860:CDS
ATCAAGAGTGGATCTTACTA+TGG 0.352058 5_3:+51633514 Msa0816860:CDS
TCTCCAGCACTCATCATGAT+AGG 0.354239 5_3:-51632558 None:intergenic
TCCTCTAATTCTTGGTATCT+GGG 0.357485 5_3:+51631776 Msa0816860:CDS
GAATAATCTAAGCAGTCATT+AGG 0.369022 5_3:+51634705 Msa0816860:exon
TAAGTGTTGCATTTACCATT+TGG 0.386480 5_3:-51632743 None:intergenic
TTTGGATCCGTACAACCTTC+AGG 0.387004 5_3:-51634624 None:intergenic
CCATCATCACTTCTGGCAGT+TGG 0.388683 5_3:-51634663 None:intergenic
CCAAACACAAAGGTTTCATC+TGG 0.389569 5_3:+51630873 Msa0816860:CDS
GATGACTTTGGAGAAATTGT+TGG 0.392112 5_3:+51633387 Msa0816860:CDS
GCATGTTCCATCATCACTTC+TGG 0.394993 5_3:-51634670 None:intergenic
ATCGTATTGGTGTTTGTAAA+GGG 0.395706 5_3:+51632934 Msa0816860:CDS
CCCCAGATACCAAGAATTAG+AGG 0.399957 5_3:-51631777 None:intergenic
CCAGGAAGTTGAACATTTGT+TGG 0.402105 5_3:-51632783 None:intergenic
GTCGTATGGAGAAATTCTAT+TGG 0.410469 5_3:+51632895 Msa0816860:CDS
CGTGTGCCTATCATTGTTAC+TGG 0.412562 5_3:+51632831 Msa0816860:CDS
CAGATTTCTTTGGTGCACTT+AGG 0.414256 5_3:+51633251 Msa0816860:intron
AGATTTCTTTGGTGCACTTA+GGG 0.414272 5_3:+51633252 Msa0816860:intron
AGGCAGAGTCAAGAAGTTCT+TGG 0.414493 5_3:-51631461 None:intergenic
TGATCAACCCAAGATGACTT+TGG 0.420505 5_3:+51633375 Msa0816860:CDS
AAATGTGAAGAGAGTTCAAT+TGG 0.422067 5_3:+51633441 Msa0816860:CDS
TCCGTACAACCTTCAGGAAC+AGG 0.428174 5_3:-51634618 None:intergenic
CAAAGACAGGTGGAGAGGTT+TGG 0.428926 5_3:+51630944 Msa0816860:CDS
CAGTTGAGCTTGAATAGCTC+TGG 0.429062 5_3:+51630783 Msa0816860:CDS
GCAGCAGACATAATAAGAAA+AGG 0.429525 5_3:+51632639 Msa0816860:CDS
TTGATCATCTGAAATATCAT+AGG 0.430471 5_3:-51630967 None:intergenic
ATACGACCGTCACGAATAAG+AGG 0.436360 5_3:-51632879 None:intergenic
GATCGTATTGGTGTTTGTAA+AGG 0.436492 5_3:+51632933 Msa0816860:CDS
TGAGCTTGTCTTTGCTAAGA+TGG 0.442576 5_3:+51631830 Msa0816860:CDS
CATCATCACTTCTGGCAGTT+GGG 0.444045 5_3:-51634662 None:intergenic
AATTTCTCCAAAGTCATCTT+GGG 0.444191 5_3:-51633382 None:intergenic
TCATTACCAGTAACAATGAT+AGG 0.445482 5_3:-51632837 None:intergenic
CTTTGTCGAATTAGTTTCGC+TGG 0.446692 5_3:-51632606 None:intergenic
CAGGAAGTTGAACATTTGTT+GGG 0.448889 5_3:-51632782 None:intergenic
TTCCAGCATCTTGTGGTGCT+TGG 0.450580 5_3:-51631031 None:intergenic
CTTCCAAAGAATGATGAACT+TGG 0.453642 5_3:-51630822 None:intergenic
TCTTATTCGTGACGGTCGTA+TGG 0.454844 5_3:+51632881 Msa0816860:CDS
CATCACAAGAGGGAAGGGTT+TGG 0.456396 5_3:+51630995 Msa0816860:CDS
TACTATAAATTCATTCCCTC+TGG 0.456659 5_3:+51630039 Msa0816860:five_prime_UTR
TGATGCAGGAGCCGGTCGTA+TGG 0.459178 5_3:+51632692 Msa0816860:CDS
AAGATTGTCGACACTTTCCC+CGG 0.465356 5_3:+51632996 Msa0816860:CDS
GAGCTAGAAAGTGGAAATGC+AGG 0.469912 5_3:+51632579 Msa0816860:CDS
GAAGTGAGAAAGTGGATTGC+TGG 0.475410 5_3:+51633292 Msa0816860:CDS
AACGATCTTGATGCAGGAGC+CGG 0.476723 5_3:+51632684 Msa0816860:CDS
TTCATAAACGATCTTGATGC+AGG 0.477723 5_3:+51632678 Msa0816860:CDS
CTTGGTATCTGGGGAGGTAA+AGG 0.479768 5_3:+51631786 Msa0816860:CDS
TCTTATGAGTACATTAGTAC+TGG 0.483378 5_3:+51631074 Msa0816860:CDS
TTCCAAGCACCACAAGATGC+TGG 0.484718 5_3:+51631029 Msa0816860:CDS
CAGCAGACATAATAAGAAAA+GGG 0.485864 5_3:+51632640 Msa0816860:CDS
TCGTATGGAGAAATTCTATT+GGG 0.487732 5_3:+51632896 Msa0816860:CDS
TCCTGTTCCTGAAGGTTGTA+CGG 0.488800 5_3:+51634617 Msa0816860:CDS
CTTGACTCTGCCTAATATCA+AGG 0.490195 5_3:+51631471 Msa0816860:CDS
TATTTGGAAGGGGCAGCTCT+TGG 0.493665 5_3:+51633472 Msa0816860:CDS
AACCTTGACAACACCATGGA+TGG 0.505223 5_3:+51631391 Msa0816860:CDS
AGCCCTATCATGATGAGTGC+TGG 0.507079 5_3:+51632555 Msa0816860:intron
ACTTTCCCCGGTCAATCCAT+TGG 0.514382 5_3:+51633008 Msa0816860:CDS
ATCTTGGGTTGATCAAAAGT+TGG 0.516048 5_3:-51633367 None:intergenic
GAACTTACCAATGGATTGAC+CGG 0.517600 5_3:-51633015 None:intergenic
ATGATGATGAAGTGAGAAAG+TGG 0.522348 5_3:+51633284 Msa0816860:CDS
GGTGTTGGCATTGAAACCAT+TGG 0.529872 5_3:+51633313 Msa0816860:CDS
ATCTTAACAACATCTTCCTC+AGG 0.532087 5_3:-51632978 None:intergenic
GATGCAGGAGCCGGTCGTAT+GGG 0.535411 5_3:+51632693 Msa0816860:CDS
GGCAGACAAGTATTTGGAAG+GGG 0.537491 5_3:+51633462 Msa0816860:CDS
TAGCAAAGACAAGCTCAGCT+TGG 0.537801 5_3:-51631824 None:intergenic
CTCCAGCACTCATCATGATA+GGG 0.540258 5_3:-51632557 None:intergenic
GAGCTTGTCTTTGCTAAGAT+GGG 0.542887 5_3:+51631831 Msa0816860:CDS
AACCATCCATGGTGTTGTCA+AGG 0.543770 5_3:-51631393 None:intergenic
GCAAGCAAACTGACAAAGAC+AGG 0.544491 5_3:+51630931 Msa0816860:CDS
CCAACTGCCAGAAGTGATGA+TGG 0.547670 5_3:+51634663 Msa0816860:CDS
GTGTTGGCATTGAAACCATT+GGG 0.550669 5_3:+51633314 Msa0816860:CDS
CCTCTAATTCTTGGTATCTG+GGG 0.553152 5_3:+51631777 Msa0816860:CDS
TTGGCAGACAAGTATTTGGA+AGG 0.553516 5_3:+51633460 Msa0816860:CDS
GTAAGTATTCCTGTTCCTGA+AGG 0.553834 5_3:+51634609 Msa0816860:CDS
TGTTGTTCCACCCATACGAC+CGG 0.556920 5_3:-51632703 None:intergenic
ATTGTGTGCACAATGTTAGT+CGG 0.557256 5_3:+51634824 Msa0816860:three_prime_UTR
ATACACTGTGAACAACCAAA+TGG 0.557588 5_3:+51632728 Msa0816860:CDS
AGCTGAGACTGAGGCAACCA+TGG 0.564992 5_3:-51630124 None:intergenic
AAGCTTGTGAACTCCAAAGA+AGG 0.566326 5_3:+51633340 Msa0816860:CDS
CCTACAAGAGAAGATCGTAT+TGG 0.570203 5_3:+51632921 Msa0816860:CDS
TCTTCTTTGTTATACATACC+AGG 0.570852 5_3:-51632801 None:intergenic
GCAGGAGCCGGTCGTATGGG+TGG 0.574559 5_3:+51632696 Msa0816860:CDS
ACAAGCTTGTCCATAAAAGC+AGG 0.575624 5_3:-51631427 None:intergenic
AGTGCTGGAGAGCTAGAAAG+TGG 0.577837 5_3:+51632570 Msa0816860:CDS
AGCTCTAACAGCTGAGACTG+AGG 0.584438 5_3:-51630133 None:intergenic
CTAATTCTTGGTATCTGGGG+AGG 0.593707 5_3:+51631780 Msa0816860:CDS
AACTTACCAATGGATTGACC+GGG 0.593734 5_3:-51633014 None:intergenic
TGGCAGACAAGTATTTGGAA+GGG 0.594237 5_3:+51633461 Msa0816860:CDS
AGAAAGTGGATTGCTGGTGT+TGG 0.596527 5_3:+51633298 Msa0816860:CDS
ACAAGACATCACAAGAGGGA+AGG 0.601230 5_3:+51630989 Msa0816860:CDS
ATCTGGGGAGGTAAAGGTCA+AGG 0.603588 5_3:+51631792 Msa0816860:CDS
TTGGGTTGATCAAAAGTTGG+AGG 0.603661 5_3:-51633364 None:intergenic
GGTGAGCAAATTTGTCCAGA+GGG 0.605860 5_3:-51630054 None:intergenic
AATCAAGATGCTATCAAGAG+TGG 0.612496 5_3:+51633502 Msa0816860:CDS
TATGCTCCTCTTATTCGTGA+CGG 0.615800 5_3:+51632873 Msa0816860:CDS
GGGTGAGCAAATTTGTCCAG+AGG 0.616427 5_3:-51630055 None:intergenic
CAAGACATCACAAGAGGGAA+GGG 0.616753 5_3:+51630990 Msa0816860:CDS
CTCGAGGTTTCCAAACACAA+AGG 0.626514 5_3:+51630863 Msa0816860:CDS
AGCAGTCATTAGGTTAAAGG+AGG 0.630028 5_3:+51634715 Msa0816860:three_prime_UTR
TAATGAGTTCCAGCATCTTG+TGG 0.630506 5_3:-51631038 None:intergenic
GATCAACAAGACATCACAAG+AGG 0.631005 5_3:+51630984 Msa0816860:CDS
TAGACATGATAATGTACCTG+AGG 0.644802 5_3:+51632962 Msa0816860:CDS
CTTTGTGTTTGGAAACCTCG+AGG 0.648452 5_3:-51630862 None:intergenic
ACTGACAAAGACAGGTGGAG+AGG 0.648715 5_3:+51630939 Msa0816860:CDS
AGCAAACTGACAAAGACAGG+TGG 0.656408 5_3:+51630934 Msa0816860:CDS
GCTTAAAGAAAGTTACCTCG+AGG 0.671149 5_3:+51630847 Msa0816860:CDS
ATCAACAAGACATCACAAGA+GGG 0.675178 5_3:+51630985 Msa0816860:CDS
AATACAACACAACACAGCCA+TGG 0.681220 5_3:+51630107 Msa0816860:exon
TCAGCTGTTAGAGCTGTCAG+TGG 0.687429 5_3:+51630141 Msa0816860:CDS
GTACAACCTTGACAACACCA+TGG 0.736816 5_3:+51631387 Msa0816860:CDS
ACTTACCAATGGATTGACCG+GGG 0.744660 5_3:-51633013 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAATATATGTAATAAAC+TGG - chr5_3:51633567-51633586 None:intergenic 10.0%
!! TTTGTTTATAATAGAAATAA+TGG + chr5_3:51633676-51633695 Msa0816860:intron 10.0%
!! AAAAAACATAGTATATTATT+GGG - chr5_3:51634238-51634257 None:intergenic 10.0%
!! AAAAAAACATAGTATATTAT+TGG - chr5_3:51634239-51634258 None:intergenic 10.0%
!!! TTTTTTTATAAAGACTTTAA+TGG - chr5_3:51634264-51634283 None:intergenic 10.0%
!!! TTTTGAACAAAATATTTATA+AGG + chr5_3:51634466-51634485 Msa0816860:intron 10.0%
!! ATAGAAAATCAAATAAAAAA+AGG - chr5_3:51634568-51634587 None:intergenic 10.0%
!! GATTATTCATTAAAAAAAAA+TGG - chr5_3:51634864-51634883 None:intergenic 10.0%
!! TTTATAAATCAAAATACCAT+GGG - chr5_3:51630487-51630506 None:intergenic 15.0%
!! ATTTATAAATCAAAATACCA+TGG - chr5_3:51630488-51630507 None:intergenic 15.0%
!! ATAAATATAGTATGATATGA+CGG + chr5_3:51630502-51630521 Msa0816860:intron 15.0%
!!! CAAATCTTTTTTTTATATGA+AGG + chr5_3:51631334-51631353 Msa0816860:intron 15.0%
!!! AATATTTTCATAATTTCTTC+AGG + chr5_3:51631752-51631771 Msa0816860:intron 15.0%
!!! AAAACATTTAAAGTATGAAT+AGG + chr5_3:51633704-51633723 Msa0816860:intron 15.0%
!!! AATTATTTAAGAGTTTTGAT+AGG - chr5_3:51634016-51634035 None:intergenic 15.0%
!!! ATATTTTTTTCACCAAAAAA+AGG + chr5_3:51634044-51634063 Msa0816860:intron 15.0%
!! TTATCATCTTGTTAAAATAT+TGG + chr5_3:51634772-51634791 Msa0816860:three_prime_UTR 15.0%
!! CAAATAATGATTCAAATGTT+TGG + chr5_3:51630331-51630350 Msa0816860:intron 20.0%
!!! ATTTTAATAGTACATAAGAG+TGG + chr5_3:51630567-51630586 Msa0816860:intron 20.0%
!!! ATCTTTTTTTTATATGAAGG+TGG + chr5_3:51631337-51631356 Msa0816860:intron 20.0%
!! ATTATTATTCATGTAGATCA+TGG + chr5_3:51631533-51631552 Msa0816860:intron 20.0%
!!! TGTTGTGAATTTTTATATTG+CGG + chr5_3:51631590-51631609 Msa0816860:intron 20.0%
!!! TTTTTGGAACAATTAATTGA+TGG + chr5_3:51631893-51631912 Msa0816860:intron 20.0%
!! TGAAAAATAGACGTAATTAA+AGG + chr5_3:51632223-51632242 Msa0816860:intron 20.0%
!! TATGTATTCGATTCAAAATT+TGG + chr5_3:51633113-51633132 Msa0816860:intron 20.0%
!!! ATTTTTTTTGCAGATTTCTT+TGG + chr5_3:51633241-51633260 Msa0816860:intron 20.0%
!! AACAAAAGTTGTATTCATTA+TGG - chr5_3:51633662-51633681 None:intergenic 20.0%
!! ATGAGAATCTATCTATATTT+AGG - chr5_3:51633967-51633986 None:intergenic 20.0%
!! TATTATAAAGAGTTTGATGT+GGG - chr5_3:51634166-51634185 None:intergenic 20.0%
!! ATATTATAAAGAGTTTGATG+TGG - chr5_3:51634167-51634186 None:intergenic 20.0%
!!! TTTTGCTTCTTTCTAATAAA+AGG + chr5_3:51634312-51634331 Msa0816860:intron 20.0%
!! TCTAATAAAAGGCAAATTAT+AGG + chr5_3:51634323-51634342 Msa0816860:intron 20.0%
!! CTAATAAAAGGCAAATTATA+GGG + chr5_3:51634324-51634343 Msa0816860:intron 20.0%
!!! GAACTGAAAACAATTTTATA+AGG + chr5_3:51634360-51634379 Msa0816860:intron 20.0%
!!! TATTTTTTTTTCCTCCATTT+TGG - chr5_3:51634429-51634448 None:intergenic 20.0%
!!! TTTTATTTGATTTTCTATGC+AGG + chr5_3:51634570-51634589 Msa0816860:intron 20.0%
!!! TTATTGTGTTCTATAGTTTT+TGG + chr5_3:51634796-51634815 Msa0816860:three_prime_UTR 20.0%
!!! TATTGTGTTCTATAGTTTTT+GGG + chr5_3:51634797-51634816 Msa0816860:three_prime_UTR 20.0%
!! AGAGAAATGTGTATTGTTTT+GGG - chr5_3:51630079-51630098 None:intergenic 25.0%
!! TAGAGAAATGTGTATTGTTT+TGG - chr5_3:51630080-51630099 None:intergenic 25.0%
! AGAATAATTGATAAGTAGCT+AGG - chr5_3:51630187-51630206 None:intergenic 25.0%
!! GAATTTTTCTTTTTACCGTA+GGG - chr5_3:51630373-51630392 None:intergenic 25.0%
!! AGAATTTTTCTTTTTACCGT+AGG - chr5_3:51630374-51630393 None:intergenic 25.0%
! ATTGCATTTGAGTAAACTTT+CGG + chr5_3:51630541-51630560 Msa0816860:intron 25.0%
!! TTGATCATCTGAAATATCAT+AGG - chr5_3:51630970-51630989 None:intergenic 25.0%
!!! TTTTTTTTATATGAAGGTGG+TGG + chr5_3:51631340-51631359 Msa0816860:intron 25.0%
! AAATTACATGCCTTGATATT+AGG - chr5_3:51631484-51631503 None:intergenic 25.0%
!!! TAGATCATGGTTTTAAATTG+TGG + chr5_3:51631546-51631565 Msa0816860:intron 25.0%
! CATCAAAATTCTTTATACTG+AGG + chr5_3:51631640-51631659 Msa0816860:intron 25.0%
!!! AAGAGTTTCAATTTTGGAAA+TGG - chr5_3:51631874-51631893 None:intergenic 25.0%
!! CCAAAAAAGAGTTTCAATTT+TGG - chr5_3:51631880-51631899 None:intergenic 25.0%
!!! CCAAAATTGAAACTCTTTTT+TGG + chr5_3:51631877-51631896 Msa0816860:intron 25.0%
!!! TTGAAGCTATGATTTTTTCT+AGG - chr5_3:51631945-51631964 None:intergenic 25.0%
! AAAATCATAGCTTCAAATCA+AGG + chr5_3:51631949-51631968 Msa0816860:intron 25.0%
!!! CAAATCAAGGTTTTGTAAAA+CGG + chr5_3:51631962-51631981 Msa0816860:intron 25.0%
! ATTAATACATCATCATCAGA+TGG - chr5_3:51632488-51632507 None:intergenic 25.0%
!!! ACTTTTTCGATTACTCTATT+CGG + chr5_3:51633055-51633074 Msa0816860:intron 25.0%
! CTTGTATATAAGAGAAAGTT+CGG + chr5_3:51633079-51633098 Msa0816860:intron 25.0%
!!! AGGTTTTTTGGTTAAATGTT+TGG + chr5_3:51633185-51633204 Msa0816860:intron 25.0%
! CATGCAAATTATTCATTTGT+AGG - chr5_3:51633212-51633231 None:intergenic 25.0%
!!! GTATGAATAGGTATTGATTT+AGG + chr5_3:51633716-51633735 Msa0816860:intron 25.0%
! AATGATTTACTTATCCTTGA+AGG - chr5_3:51633748-51633767 None:intergenic 25.0%
! TTCAAGGATAAGTAAATCAT+TGG + chr5_3:51633747-51633766 Msa0816860:intron 25.0%
! ACCAAAAAAAGGTTAACAAA+CGG + chr5_3:51634055-51634074 Msa0816860:intron 25.0%
! ATGTTTAGATTGGCAAAAAA+AGG - chr5_3:51634082-51634101 None:intergenic 25.0%
! ATGTGTATTCATGTTTAGAT+TGG - chr5_3:51634092-51634111 None:intergenic 25.0%
!! TAAAATTGTTTTCAGTTCCT+TGG - chr5_3:51634358-51634377 None:intergenic 25.0%
!! ACTCAAAAAGTATGTATGAT+TGG + chr5_3:51634518-51634537 Msa0816860:intron 25.0%
TACTATAAATTCATTCCCTC+TGG + chr5_3:51630039-51630058 Msa0816860:five_prime_UTR 30.0%
!! GAGAAATGTGTATTGTTTTG+GGG - chr5_3:51630078-51630097 None:intergenic 30.0%
! TGATTCAAATGTTTGGAATC+TGG + chr5_3:51630338-51630357 Msa0816860:intron 30.0%
! AAATGTTTGGAATCTGGATT+TGG + chr5_3:51630344-51630363 Msa0816860:intron 30.0%
! TACATCTCAGTTGACTTAAT+TGG + chr5_3:51630427-51630446 Msa0816860:intron 30.0%
! TCAGTTGACTTAATTGGTAT+CGG + chr5_3:51630433-51630452 Msa0816860:intron 30.0%
TAAATCAAAATACCATGGGT+TGG - chr5_3:51630483-51630502 None:intergenic 30.0%
! CTAAAGTATCAGTTCTACTT+AGG - chr5_3:51630599-51630618 None:intergenic 30.0%
TATTACCAATGTCTACGTAT+AGG + chr5_3:51630718-51630737 Msa0816860:intron 30.0%
TCTTATGAGTACATTAGTAC+TGG + chr5_3:51631074-51631093 Msa0816860:CDS 30.0%
!!! AGTGTTTTAAAAACCAAACC+AGG + chr5_3:51631171-51631190 Msa0816860:intron 30.0%
AATTCACAACATAACTGCAA+CGG - chr5_3:51631581-51631600 None:intergenic 30.0%
! CTATTTTATTCGAGTCTTAG+TGG - chr5_3:51631721-51631740 None:intergenic 30.0%
TTAAAGGTAACCTCATATGT+CGG + chr5_3:51632239-51632258 Msa0816860:intron 30.0%
CAGCAGACATAATAAGAAAA+GGG + chr5_3:51632640-51632659 Msa0816860:CDS 30.0%
! TAAGTGTTGCATTTACCATT+TGG - chr5_3:51632746-51632765 None:intergenic 30.0%
! TCTTCTTTGTTATACATACC+AGG - chr5_3:51632804-51632823 None:intergenic 30.0%
TCATTACCAGTAACAATGAT+AGG - chr5_3:51632840-51632859 None:intergenic 30.0%
TCGTATGGAGAAATTCTATT+GGG + chr5_3:51632896-51632915 Msa0816860:CDS 30.0%
! ATCGTATTGGTGTTTGTAAA+GGG + chr5_3:51632934-51632953 Msa0816860:CDS 30.0%
ATTCGATTCAAAATTTGGAC+CGG + chr5_3:51633118-51633137 Msa0816860:intron 30.0%
!!! AACAGAATGAGTAGGTTTTT+TGG + chr5_3:51633173-51633192 Msa0816860:intron 30.0%
AATTTCTCCAAAGTCATCTT+GGG - chr5_3:51633385-51633404 None:intergenic 30.0%
! TCTTCACATTTTCTTGTTCT+TGG - chr5_3:51633432-51633451 None:intergenic 30.0%
AAATGTGAAGAGAGTTCAAT+TGG + chr5_3:51633441-51633460 Msa0816860:CDS 30.0%
! GGTACAGTTTTACAAACAAT+TGG + chr5_3:51633768-51633787 Msa0816860:intron 30.0%
! CAGTTTTACAAACAATTGGA+AGG + chr5_3:51633772-51633791 Msa0816860:intron 30.0%
!!! ACCGTTTGTTAACCTTTTTT+TGG - chr5_3:51634059-51634078 None:intergenic 30.0%
ACCACATCAAAATTGAACTT+AGG + chr5_3:51634189-51634208 Msa0816860:intron 30.0%
!! TCCTAAGTTCAATTTTGATG+TGG - chr5_3:51634193-51634212 None:intergenic 30.0%
AAAGAAGCAAAAGATATTGC+AGG - chr5_3:51634304-51634323 None:intergenic 30.0%
GAATCAATCATAGACCAAAA+TGG + chr5_3:51634412-51634431 Msa0816860:intron 30.0%
!! TTTGATTTTCTATGCAGGTA+AGG + chr5_3:51634575-51634594 Msa0816860:intron 30.0%
GAATAATCTAAGCAGTCATT+AGG + chr5_3:51634705-51634724 Msa0816860:exon 30.0%
AGCTAGGTAAAGTAACATAC+TGG - chr5_3:51630171-51630190 None:intergenic 35.0%
GATGTACGATCTTAATAGGA+CGG - chr5_3:51630413-51630432 None:intergenic 35.0%
CTGAGATGTACGATCTTAAT+AGG - chr5_3:51630417-51630436 None:intergenic 35.0%
! CAGTTGACTTAATTGGTATC+GGG + chr5_3:51630434-51630453 Msa0816860:intron 35.0%
TATAGTATGATATGACGGTC+TGG + chr5_3:51630507-51630526 Msa0816860:intron 35.0%
GTTCCAAGTTCATCATTCTT+TGG + chr5_3:51630819-51630838 Msa0816860:CDS 35.0%
CTTCCAAAGAATGATGAACT+TGG - chr5_3:51630825-51630844 None:intergenic 35.0%
ATCAACAAGACATCACAAGA+GGG + chr5_3:51630985-51631004 Msa0816860:CDS 35.0%
TTGTGCAGTTCCAATTCAAT+CGG - chr5_3:51631232-51631251 None:intergenic 35.0%
GTTCAATTGGTTGAATTGTC+TGG + chr5_3:51631283-51631302 Msa0816860:intron 35.0%
ATTGGTTGAATTGTCTGGTT+CGG + chr5_3:51631288-51631307 Msa0816860:intron 35.0%
ACCATGTATGATGGTATTTC+AGG + chr5_3:51631365-51631384 Msa0816860:intron 35.0%
ACCTGAAATACCATCATACA+TGG - chr5_3:51631369-51631388 None:intergenic 35.0%
TGCAATGTAAAAACCATCCA+TGG - chr5_3:51631407-51631426 None:intergenic 35.0%
!! TTACATTGCACCTGCTTTTA+TGG + chr5_3:51631417-51631436 Msa0816860:CDS 35.0%
TTGATGTCTTTACACGTCAT+CGG - chr5_3:51631626-51631645 None:intergenic 35.0%
CAGTATATGCTTCAATTGCA+TGG - chr5_3:51631698-51631717 None:intergenic 35.0%
TTCCTCTAATTCTTGGTATC+TGG + chr5_3:51631775-51631794 Msa0816860:CDS 35.0%
TCCTCTAATTCTTGGTATCT+GGG + chr5_3:51631776-51631795 Msa0816860:CDS 35.0%
GTCTAACACACATTTGGATT+GGG - chr5_3:51632434-51632453 None:intergenic 35.0%
TGTCTAACACACATTTGGAT+TGG - chr5_3:51632435-51632454 None:intergenic 35.0%
GCTGGAATTGTCAAATCATA+TGG - chr5_3:51632538-51632557 None:intergenic 35.0%
GCAGCAGACATAATAAGAAA+AGG + chr5_3:51632639-51632658 Msa0816860:CDS 35.0%
TTCATAAACGATCTTGATGC+AGG + chr5_3:51632678-51632697 Msa0816860:CDS 35.0%
ATACACTGTGAACAACCAAA+TGG + chr5_3:51632728-51632747 Msa0816860:CDS 35.0%
CAGGAAGTTGAACATTTGTT+GGG - chr5_3:51632785-51632804 None:intergenic 35.0%
GTCGTATGGAGAAATTCTAT+TGG + chr5_3:51632895-51632914 Msa0816860:CDS 35.0%
! GATCGTATTGGTGTTTGTAA+AGG + chr5_3:51632933-51632952 Msa0816860:CDS 35.0%
! TAGACATGATAATGTACCTG+AGG + chr5_3:51632962-51632981 Msa0816860:CDS 35.0%
ATCTTAACAACATCTTCCTC+AGG - chr5_3:51632981-51633000 None:intergenic 35.0%
TCTAGAAGTGAACTTACCAA+TGG - chr5_3:51633027-51633046 None:intergenic 35.0%
TCTCTTAGAACAGAATGAGT+AGG + chr5_3:51633165-51633184 Msa0816860:intron 35.0%
! AGATTTCTTTGGTGCACTTA+GGG + chr5_3:51633252-51633271 Msa0816860:intron 35.0%
! ATGATGATGAAGTGAGAAAG+TGG + chr5_3:51633284-51633303 Msa0816860:CDS 35.0%
!! ATCTTGGGTTGATCAAAAGT+TGG - chr5_3:51633370-51633389 None:intergenic 35.0%
CAATTTCTCCAAAGTCATCT+TGG - chr5_3:51633386-51633405 None:intergenic 35.0%
! GATGACTTTGGAGAAATTGT+TGG + chr5_3:51633387-51633406 Msa0816860:CDS 35.0%
TTGGAGAAATTGTTGGAGTA+TGG + chr5_3:51633394-51633413 Msa0816860:CDS 35.0%
TCAATTGGCAGACAAGTATT+TGG + chr5_3:51633456-51633475 Msa0816860:CDS 35.0%
AATCAAGATGCTATCAAGAG+TGG + chr5_3:51633502-51633521 Msa0816860:CDS 35.0%
ATCAAGAGTGGATCTTACTA+TGG + chr5_3:51633514-51633533 Msa0816860:CDS 35.0%
GATTTAGGAAAAGTCCTTCA+AGG + chr5_3:51633731-51633750 Msa0816860:intron 35.0%
CACAAATTGAGTCTAGACTT+AGG - chr5_3:51633822-51633841 None:intergenic 35.0%
TGTTAACCGTTCAATGTGTT+AGG - chr5_3:51633857-51633876 None:intergenic 35.0%
CGTACACATTAAAGGACTTT+AGG - chr5_3:51633891-51633910 None:intergenic 35.0%
AAAGGCAAATTATAGGGACT+AGG + chr5_3:51634330-51634349 Msa0816860:intron 35.0%
TCAATCATAGACCAAAATGG+AGG + chr5_3:51634415-51634434 Msa0816860:intron 35.0%
CTAAGCAGTCATTAGGTTAA+AGG + chr5_3:51634712-51634731 Msa0816860:three_prime_UTR 35.0%
ATTGTGTGCACAATGTTAGT+CGG + chr5_3:51634824-51634843 Msa0816860:three_prime_UTR 35.0%
AATACAACACAACACAGCCA+TGG + chr5_3:51630107-51630126 Msa0816860:exon 40.0%
ATCTGGATTTGGATTCCCTA+CGG + chr5_3:51630355-51630374 Msa0816860:intron 40.0%
TGACACCTATACGTAGACAT+TGG - chr5_3:51630726-51630745 None:intergenic 40.0%
TCATGTCTGATGTGTCTCAT+AGG + chr5_3:51630743-51630762 Msa0816860:intron 40.0%
GCTTAAAGAAAGTTACCTCG+AGG + chr5_3:51630847-51630866 Msa0816860:CDS 40.0%
CCAGATGAAACCTTTGTGTT+TGG - chr5_3:51630876-51630895 None:intergenic 40.0%
CCAAACACAAAGGTTTCATC+TGG + chr5_3:51630873-51630892 Msa0816860:CDS 40.0%
GATCAACAAGACATCACAAG+AGG + chr5_3:51630984-51631003 Msa0816860:CDS 40.0%
TAATGAGTTCCAGCATCTTG+TGG - chr5_3:51631041-51631060 None:intergenic 40.0%
CATGGTTCAACCGATTGAAT+TGG + chr5_3:51631219-51631238 Msa0816860:intron 40.0%
!! TTGAATTGTCTGGTTCGGTT+CGG + chr5_3:51631293-51631312 Msa0816860:intron 40.0%
!!! CGGTTCGGTTTTTGAAAGAT+TGG + chr5_3:51631308-51631327 Msa0816860:intron 40.0%
ACAAGCTTGTCCATAAAAGC+AGG - chr5_3:51631430-51631449 None:intergenic 40.0%
CTTGACTCTGCCTAATATCA+AGG + chr5_3:51631471-51631490 Msa0816860:CDS 40.0%
! CTTCAGGTTCCTCTAATTCT+TGG + chr5_3:51631768-51631787 Msa0816860:intron 40.0%
CCTCTAATTCTTGGTATCTG+GGG + chr5_3:51631777-51631796 Msa0816860:CDS 40.0%
TGAGCTTGTCTTTGCTAAGA+TGG + chr5_3:51631830-51631849 Msa0816860:CDS 40.0%
GAGCTTGTCTTTGCTAAGAT+GGG + chr5_3:51631831-51631850 Msa0816860:CDS 40.0%
! GTAAAACGGTTTTGCAACCA+CGG + chr5_3:51631976-51631995 Msa0816860:intron 40.0%
TGACGTTGCAAATATAACCG+TGG - chr5_3:51631996-51632015 None:intergenic 40.0%
CACTGCATTGCGAAAAATTG+TGG - chr5_3:51632082-51632101 None:intergenic 40.0%
GACTGTGCCTATTTACAATC+CGG - chr5_3:51632267-51632286 None:intergenic 40.0%
AGGCACAGTCAAATATACCT+TGG + chr5_3:51632277-51632296 Msa0816860:intron 40.0%
!!! CCAGATTTTAAAGCGGATCT+TGG - chr5_3:51632362-51632381 None:intergenic 40.0%
!! CCAAGATCCGCTTTAAAATC+TGG + chr5_3:51632359-51632378 Msa0816860:intron 40.0%
!! GAACGGTCCAGATTTTAAAG+CGG - chr5_3:51632369-51632388 None:intergenic 40.0%
GGCTGTCAACAAAGATAGAA+CGG - chr5_3:51632386-51632405 None:intergenic 40.0%
TCCAAATGTGTGTTAGACAC+CGG + chr5_3:51632436-51632455 Msa0816860:intron 40.0%
TGTTAGACACCGGTAAATGT+CGG + chr5_3:51632446-51632465 Msa0816860:intron 40.0%
! GTTTTGTGTCCGACATTTAC+CGG - chr5_3:51632458-51632477 None:intergenic 40.0%
! CTTTGTCGAATTAGTTTCGC+TGG - chr5_3:51632609-51632628 None:intergenic 40.0%
CCAGGAAGTTGAACATTTGT+TGG - chr5_3:51632786-51632805 None:intergenic 40.0%
CCAACAAATGTTCAACTTCC+TGG + chr5_3:51632783-51632802 Msa0816860:CDS 40.0%
TATGCTCCTCTTATTCGTGA+CGG + chr5_3:51632873-51632892 Msa0816860:CDS 40.0%
CCAATACGATCTTCTCTTGT+AGG - chr5_3:51632924-51632943 None:intergenic 40.0%
CCTACAAGAGAAGATCGTAT+TGG + chr5_3:51632921-51632940 Msa0816860:CDS 40.0%
!! AACTTACCAATGGATTGACC+GGG - chr5_3:51633017-51633036 None:intergenic 40.0%
!! GAACTTACCAATGGATTGAC+CGG - chr5_3:51633018-51633037 None:intergenic 40.0%
! CAGATTTCTTTGGTGCACTT+AGG + chr5_3:51633251-51633270 Msa0816860:intron 40.0%
! GTGTTGGCATTGAAACCATT+GGG + chr5_3:51633314-51633333 Msa0816860:CDS 40.0%
!! GTTCACAAGCTTTTTCCCAA+TGG - chr5_3:51633332-51633351 None:intergenic 40.0%
AAGCTTGTGAACTCCAAAGA+AGG + chr5_3:51633340-51633359 Msa0816860:CDS 40.0%
AAAAGTTGGAGGTCCTTCTT+TGG - chr5_3:51633356-51633375 None:intergenic 40.0%
!! TTGGGTTGATCAAAAGTTGG+AGG - chr5_3:51633367-51633386 None:intergenic 40.0%
TGATCAACCCAAGATGACTT+TGG + chr5_3:51633375-51633394 Msa0816860:CDS 40.0%
TTGGCAGACAAGTATTTGGA+AGG + chr5_3:51633460-51633479 Msa0816860:CDS 40.0%
TGGCAGACAAGTATTTGGAA+GGG + chr5_3:51633461-51633480 Msa0816860:CDS 40.0%
ATTGGAAGGAGAAAGATGCA+AGG + chr5_3:51633786-51633805 Msa0816860:intron 40.0%
CTTCGACCTAACACATTGAA+CGG + chr5_3:51633848-51633867 Msa0816860:intron 40.0%
GTCCTTTAATGTGTACGATC+AGG + chr5_3:51633894-51633913 Msa0816860:intron 40.0%
TGCCTGATCGTACACATTAA+AGG - chr5_3:51633899-51633918 None:intergenic 40.0%
ATTATAGGGACTAGGTACCA+AGG + chr5_3:51634338-51634357 Msa0816860:intron 40.0%
GTAAGTATTCCTGTTCCTGA+AGG + chr5_3:51634609-51634628 Msa0816860:CDS 40.0%
AGCAGTCATTAGGTTAAAGG+AGG + chr5_3:51634715-51634734 Msa0816860:three_prime_UTR 40.0%
GGTGAGCAAATTTGTCCAGA+GGG - chr5_3:51630057-51630076 None:intergenic 45.0%
! GACTTAATTGGTATCGGGCA+AGG + chr5_3:51630439-51630458 Msa0816860:intron 45.0%
CAGTTGAGCTTGAATAGCTC+TGG + chr5_3:51630783-51630802 Msa0816860:CDS 45.0%
CTTTGTGTTTGGAAACCTCG+AGG - chr5_3:51630865-51630884 None:intergenic 45.0%
CTCGAGGTTTCCAAACACAA+AGG + chr5_3:51630863-51630882 Msa0816860:CDS 45.0%
GCAAGCAAACTGACAAAGAC+AGG + chr5_3:51630931-51630950 Msa0816860:CDS 45.0%
AGCAAACTGACAAAGACAGG+TGG + chr5_3:51630934-51630953 Msa0816860:CDS 45.0%
ACAAGACATCACAAGAGGGA+AGG + chr5_3:51630989-51631008 Msa0816860:CDS 45.0%
CAAGACATCACAAGAGGGAA+GGG + chr5_3:51630990-51631009 Msa0816860:CDS 45.0%
!! GCGCTGGTTCATAGTTCAAT+TGG + chr5_3:51631270-51631289 Msa0816860:intron 45.0%
GTACAACCTTGACAACACCA+TGG + chr5_3:51631387-51631406 Msa0816860:CDS 45.0%
AACCTTGACAACACCATGGA+TGG + chr5_3:51631391-51631410 Msa0816860:CDS 45.0%
!! AACCATCCATGGTGTTGTCA+AGG - chr5_3:51631396-51631415 None:intergenic 45.0%
AGGCAGAGTCAAGAAGTTCT+TGG - chr5_3:51631464-51631483 None:intergenic 45.0%
CCCCAGATACCAAGAATTAG+AGG - chr5_3:51631780-51631799 None:intergenic 45.0%
CTAATTCTTGGTATCTGGGG+AGG + chr5_3:51631780-51631799 Msa0816860:CDS 45.0%
TAGCAAAGACAAGCTCAGCT+TGG - chr5_3:51631827-51631846 None:intergenic 45.0%
GTAACCTCATATGTCGGATC+CGG + chr5_3:51632245-51632264 Msa0816860:intron 45.0%
GTCGGATCCGGATTGTAAAT+AGG + chr5_3:51632257-51632276 Msa0816860:intron 45.0%
TGATCTTGATTGGACGACCA+AGG - chr5_3:51632297-51632316 None:intergenic 45.0%
GTCGTCCAATCAAGATCAGA+CGG + chr5_3:51632299-51632318 Msa0816860:intron 45.0%
CTAGACCGTCTGATCTTGAT+TGG - chr5_3:51632307-51632326 None:intergenic 45.0%
ACCGGTGTCTAACACACATT+TGG - chr5_3:51632440-51632459 None:intergenic 45.0%
CTCCAGCACTCATCATGATA+GGG - chr5_3:51632560-51632579 None:intergenic 45.0%
TCTCCAGCACTCATCATGAT+AGG - chr5_3:51632561-51632580 None:intergenic 45.0%
GAGCTAGAAAGTGGAAATGC+AGG + chr5_3:51632579-51632598 Msa0816860:CDS 45.0%
CGTGTGCCTATCATTGTTAC+TGG + chr5_3:51632831-51632850 Msa0816860:CDS 45.0%
ATACGACCGTCACGAATAAG+AGG - chr5_3:51632882-51632901 None:intergenic 45.0%
TCTTATTCGTGACGGTCGTA+TGG + chr5_3:51632881-51632900 Msa0816860:CDS 45.0%
AAGATTGTCGACACTTTCCC+CGG + chr5_3:51632996-51633015 Msa0816860:CDS 45.0%
!! ACTTACCAATGGATTGACCG+GGG - chr5_3:51633016-51633035 None:intergenic 45.0%
!! GAAGTGAGAAAGTGGATTGC+TGG + chr5_3:51633292-51633311 Msa0816860:CDS 45.0%
!! AGAAAGTGGATTGCTGGTGT+TGG + chr5_3:51633298-51633317 Msa0816860:CDS 45.0%
!! GGTGTTGGCATTGAAACCAT+TGG + chr5_3:51633313-51633332 Msa0816860:CDS 45.0%
GGCAGACAAGTATTTGGAAG+GGG + chr5_3:51633462-51633481 Msa0816860:CDS 45.0%
TGTGTACGATCAGGCACAAT+CGG + chr5_3:51633903-51633922 Msa0816860:intron 45.0%
TCCTGTTCCTGAAGGTTGTA+CGG + chr5_3:51634617-51634636 Msa0816860:CDS 45.0%
TTTGGATCCGTACAACCTTC+AGG - chr5_3:51634627-51634646 None:intergenic 45.0%
!!! GGGTCGAAGTTTTTGGCATT+TGG - chr5_3:51634645-51634664 None:intergenic 45.0%
CATCATCACTTCTGGCAGTT+GGG - chr5_3:51634665-51634684 None:intergenic 45.0%
GCATGTTCCATCATCACTTC+TGG - chr5_3:51634673-51634692 None:intergenic 45.0%
!!! TTTTTTAAATCTAAAATATT+TGG - chr5_3:51632338-51632357 None:intergenic 5.0%
GGGTGAGCAAATTTGTCCAG+AGG - chr5_3:51630058-51630077 None:intergenic 50.0%
! AGCTCTAACAGCTGAGACTG+AGG - chr5_3:51630136-51630155 None:intergenic 50.0%
TCAGCTGTTAGAGCTGTCAG+TGG + chr5_3:51630141-51630160 Msa0816860:CDS 50.0%
GCAAGGACCGACTAATCTAG+CGG + chr5_3:51630456-51630475 Msa0816860:intron 50.0%
! GGTTGGTCCGCTAGATTAGT+CGG - chr5_3:51630466-51630485 None:intergenic 50.0%
! TAATCTAGCGGACCAACCCA+TGG + chr5_3:51630468-51630487 Msa0816860:intron 50.0%
CACATGTGTCAGTAGCGTGT+TGG - chr5_3:51630664-51630683 None:intergenic 50.0%
ACTGACAAAGACAGGTGGAG+AGG + chr5_3:51630939-51630958 Msa0816860:CDS 50.0%
CAAAGACAGGTGGAGAGGTT+TGG + chr5_3:51630944-51630963 Msa0816860:CDS 50.0%
CATCACAAGAGGGAAGGGTT+TGG + chr5_3:51630995-51631014 Msa0816860:CDS 50.0%
TTCCAAGCACCACAAGATGC+TGG + chr5_3:51631029-51631048 Msa0816860:CDS 50.0%
TTCCAGCATCTTGTGGTGCT+TGG - chr5_3:51631034-51631053 None:intergenic 50.0%
!! AACCAAACCAGGCACCGAAT+CGG + chr5_3:51631182-51631201 Msa0816860:intron 50.0%
! ACCTAGTGGTCTTGCCGATT+CGG - chr5_3:51631199-51631218 None:intergenic 50.0%
TCGGTTGAACCATGACCTAG+TGG - chr5_3:51631213-51631232 None:intergenic 50.0%
AATTGAACCGTAGACAGCGC+TGG + chr5_3:51631254-51631273 Msa0816860:intron 50.0%
CTATGAACCAGCGCTGTCTA+CGG - chr5_3:51631264-51631283 None:intergenic 50.0%
GTGGTGGTCACCATGTATGA+TGG + chr5_3:51631356-51631375 Msa0816860:intron 50.0%
CTTGGTATCTGGGGAGGTAA+AGG + chr5_3:51631786-51631805 Msa0816860:CDS 50.0%
ATCTGGGGAGGTAAAGGTCA+AGG + chr5_3:51631792-51631811 Msa0816860:CDS 50.0%
GCTATGTGTCAGCTTGTGTC+TGG - chr5_3:51632188-51632207 None:intergenic 50.0%
CAATCCGGATCCGACATATG+AGG - chr5_3:51632252-51632271 None:intergenic 50.0%
GTGTGACTGCACACGCATAT+CGG - chr5_3:51632407-51632426 None:intergenic 50.0%
AGCACTCATCATGATAGGGC+TGG - chr5_3:51632556-51632575 None:intergenic 50.0%
AGCCCTATCATGATGAGTGC+TGG + chr5_3:51632555-51632574 Msa0816860:intron 50.0%
! AGTGCTGGAGAGCTAGAAAG+TGG + chr5_3:51632570-51632589 Msa0816860:CDS 50.0%
AACGATCTTGATGCAGGAGC+CGG + chr5_3:51632684-51632703 Msa0816860:CDS 50.0%
TGTTGTTCCACCCATACGAC+CGG - chr5_3:51632706-51632725 None:intergenic 50.0%
ACTTTCCCCGGTCAATCCAT+TGG + chr5_3:51633008-51633027 Msa0816860:CDS 50.0%
GAGTCAACAGTCGATGTGTC+CGG - chr5_3:51633140-51633159 None:intergenic 50.0%
TATTTGGAAGGGGCAGCTCT+TGG + chr5_3:51633472-51633491 Msa0816860:CDS 50.0%
TCCGTACAACCTTCAGGAAC+AGG - chr5_3:51634621-51634640 None:intergenic 50.0%
! GGCAGTTGGGTCGAAGTTTT+TGG - chr5_3:51634652-51634671 None:intergenic 50.0%
CCATCATCACTTCTGGCAGT+TGG - chr5_3:51634666-51634685 None:intergenic 50.0%
CCAACTGCCAGAAGTGATGA+TGG + chr5_3:51634663-51634682 Msa0816860:CDS 50.0%
AGCTGAGACTGAGGCAACCA+TGG - chr5_3:51630127-51630146 None:intergenic 55.0%
ACCGAATCGGCAAGACCACT+AGG + chr5_3:51631195-51631214 Msa0816860:intron 55.0%
TCGGCAAGACCACTAGGTCA+TGG + chr5_3:51631201-51631220 Msa0816860:intron 55.0%
!! TGCCGATTCGGTGCCTGGTT+TGG - chr5_3:51631187-51631206 None:intergenic 60.0%
TGATGCAGGAGCCGGTCGTA+TGG + chr5_3:51632692-51632711 Msa0816860:CDS 60.0%
GATGCAGGAGCCGGTCGTAT+GGG + chr5_3:51632693-51632712 Msa0816860:CDS 60.0%
!! GGTCTTGCCGATTCGGTGCC+TGG - chr5_3:51631192-51631211 None:intergenic 65.0%
GCAGGAGCCGGTCGTATGGG+TGG + chr5_3:51632696-51632715 Msa0816860:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_3 gene 51630013 51634975 51630013 ID=Msa0816860;Name=Msa0816860
chr5_3 mRNA 51630013 51634975 51630013 ID=Msa0816860-mRNA-1;Parent=Msa0816860;Name=Msa0816860-mRNA-1;_AED=0.01;_eAED=0.01;_QI=113|0.83|0.85|1|1|1|7|265|483
chr5_3 exon 51630013 51630170 51630013 ID=Msa0816860-mRNA-1:exon:15478;Parent=Msa0816860-mRNA-1
chr5_3 exon 51630765 51631105 51630765 ID=Msa0816860-mRNA-1:exon:15479;Parent=Msa0816860-mRNA-1
chr5_3 exon 51631387 51631492 51631387 ID=Msa0816860-mRNA-1:exon:15480;Parent=Msa0816860-mRNA-1
chr5_3 exon 51631774 51631859 51631774 ID=Msa0816860-mRNA-1:exon:15481;Parent=Msa0816860-mRNA-1
chr5_3 exon 51632557 51633029 51632557 ID=Msa0816860-mRNA-1:exon:15482;Parent=Msa0816860-mRNA-1
chr5_3 exon 51633254 51633535 51633254 ID=Msa0816860-mRNA-1:exon:15483;Parent=Msa0816860-mRNA-1
chr5_3 exon 51634592 51634975 51634592 ID=Msa0816860-mRNA-1:exon:15484;Parent=Msa0816860-mRNA-1
chr5_3 five_prime_UTR 51630013 51630125 51630013 ID=Msa0816860-mRNA-1:five_prime_utr;Parent=Msa0816860-mRNA-1
chr5_3 CDS 51630126 51630170 51630126 ID=Msa0816860-mRNA-1:cds;Parent=Msa0816860-mRNA-1
chr5_3 CDS 51630765 51631105 51630765 ID=Msa0816860-mRNA-1:cds;Parent=Msa0816860-mRNA-1
chr5_3 CDS 51631387 51631492 51631387 ID=Msa0816860-mRNA-1:cds;Parent=Msa0816860-mRNA-1
chr5_3 CDS 51631774 51631859 51631774 ID=Msa0816860-mRNA-1:cds;Parent=Msa0816860-mRNA-1
chr5_3 CDS 51632557 51633029 51632557 ID=Msa0816860-mRNA-1:cds;Parent=Msa0816860-mRNA-1
chr5_3 CDS 51633254 51633535 51633254 ID=Msa0816860-mRNA-1:cds;Parent=Msa0816860-mRNA-1
chr5_3 CDS 51634592 51634710 51634592 ID=Msa0816860-mRNA-1:cds;Parent=Msa0816860-mRNA-1
chr5_3 three_prime_UTR 51634711 51634975 51634711 ID=Msa0816860-mRNA-1:three_prime_utr;Parent=Msa0816860-mRNA-1
Gene Sequence

>Msa0816860

ATGGTTGCCTCAGTCTCAGCTGTTAGAGCTGTCAGTGGAACACCAGATAATACTGTGATATTGCAGTTGAGCTTGAATAGCTCTGGAGCAGTAGCTTCAGTTCCAAGTTCATCATTCTTTGGAAGCAGCTTAAAGAAAGTTACCTCGAGGTTTCCAAACACAAAGGTTTCATCTGGAAGTATGAAAATTGTTGCTGCTGAGATTGATGAAAGCAAGCAAACTGACAAAGACAGGTGGAGAGGTTTGGCCTATGATATTTCAGATGATCAACAAGACATCACAAGAGGGAAGGGTTTGGTTGATACAGTTTTCCAAGCACCACAAGATGCTGGAACTCATTATGCAGTCATGAGTTCTTATGAGTACATTAGTACTGGACTTAGACAGTACAACCTTGACAACACCATGGATGGTTTTTACATTGCACCTGCTTTTATGGACAAGCTTGTTGTACACATCACCAAGAACTTCTTGACTCTGCCTAATATCAAGGTTCCTCTAATTCTTGGTATCTGGGGAGGTAAAGGTCAAGGAAAATCTTTCCAAGCTGAGCTTGTCTTTGCTAAGATGGGAATCAACCCTATCATGATGAGTGCTGGAGAGCTAGAAAGTGGAAATGCAGGAGAACCAGCGAAACTAATTCGACAAAGATATAGAGAAGCAGCAGACATAATAAGAAAAGGGAAAATGTGTTGTCTCTTCATAAACGATCTTGATGCAGGAGCCGGTCGTATGGGTGGAACAACACAATACACTGTGAACAACCAAATGGTAAATGCAACACTTATGAACATTGCTGATAACCCAACAAATGTTCAACTTCCTGGTATGTATAACAAAGAAGAGAATGCACGTGTGCCTATCATTGTTACTGGTAATGATTTTTCAACATTGTATGCTCCTCTTATTCGTGACGGTCGTATGGAGAAATTCTATTGGGCACCTACAAGAGAAGATCGTATTGGTGTTTGTAAAGGGATTTTTAGACATGATAATGTACCTGAGGAAGATGTTGTTAAGATTGTCGACACTTTCCCCGGTCAATCCATTGATTTCTTTGGTGCACTTAGGGCAAGAGTATATGATGATGAAGTGAGAAAGTGGATTGCTGGTGTTGGCATTGAAACCATTGGGAAAAAGCTTGTGAACTCCAAAGAAGGACCTCCAACTTTTGATCAACCCAAGATGACTTTGGAGAAATTGTTGGAGTATGGTAACATGCTTGTCCAAGAACAAGAAAATGTGAAGAGAGTTCAATTGGCAGACAAGTATTTGGAAGGGGCAGCTCTTGGTGATGCTAATCAAGATGCTATCAAGAGTGGATCTTACTATGGTAAGGCAGCTCAACAAGTAAGTATTCCTGTTCCTGAAGGTTGTACGGATCCAAATGCCAAAAACTTCGACCCAACTGCCAGAAGTGATGATGGAACATGCTTATACACATTTGAATAA

Protein sequence

>Msa0816860

MVASVSAVRAVSGTPDNTVILQLSLNSSGAVASVPSSSFFGSSLKKVTSRFPNTKVSSGSMKIVAAEIDESKQTDKDRWRGLAYDISDDQQDITRGKGLVDTVFQAPQDAGTHYAVMSSYEYISTGLRQYNLDNTMDGFYIAPAFMDKLVVHITKNFLTLPNIKVPLILGIWGGKGQGKSFQAELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIRKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKEENARVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCKGIFRHDNVPEEDVVKIVDTFPGQSIDFFGALRARVYDDEVRKWIAGVGIETIGKKLVNSKEGPPTFDQPKMTLEKLLEYGNMLVQEQENVKRVQLADKYLEGAALGDANQDAIKSGSYYGKAAQQVSIPVPEGCTDPNAKNFDPTARSDDGTCLYTFE*