AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0114960

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114960 MtrunA17_Chr2g0305051 94.137 597 13 2 1 579 1 593 0.0 1154
Msa0114960 MtrunA17_Chr4g0017231 59.091 220 90 0 67 286 78 297 3.01e-86 270
Msa0114960 MtrunA17_Chr4g0057771 37.333 225 124 5 70 281 23 243 1.27e-39 145
Msa0114960 MtrunA17_Chr7g0263541 33.508 191 106 4 83 255 43 230 1.07e-25 106
Msa0114960 MtrunA17_Chr1g0181801 32.461 191 108 4 83 255 118 305 4.15e-23 100
Msa0114960 MtrunA17_Chr8g0337051 29.907 214 106 7 76 279 21 200 1.59e-22 95.9
Msa0114960 MtrunA17_Chr4g0018221 24.215 223 139 5 66 285 44 239 1.45e-17 82.4
Msa0114960 MtrunA17_Chr5g0428971 23.810 231 146 5 58 285 13 216 6.76e-17 80.1
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0114960 AT5G35170.1 69.318 528 132 2 69 578 72 587 0.0 770
Msa0114960 AT5G35170.2 69.482 521 129 2 69 571 72 580 0.0 763
Msa0114960 AT5G47840.1 64.545 220 78 0 67 286 55 274 1.36e-92 286
Msa0114960 AT5G47840.2 61.818 220 70 1 67 286 55 260 7.24e-86 268
Msa0114960 AT5G63400.1 35.586 222 132 5 69 280 26 246 5.07e-36 135
Msa0114960 AT5G50370.1 36.893 206 115 5 69 263 27 228 9.91e-35 132
Msa0114960 AT5G50370.2 38.144 194 105 5 69 251 27 216 7.91e-34 129
Msa0114960 AT5G63400.2 41.290 155 86 2 69 219 26 179 6.96e-32 122
Msa0114960 AT2G37250.1 34.031 191 105 4 83 255 58 245 4.79e-27 111
Msa0114960 AT5G26667.3 28.037 214 124 4 70 280 8 194 1.51e-24 102
Msa0114960 AT5G26667.2 28.037 214 124 4 70 280 8 194 1.51e-24 102
Msa0114960 AT5G26667.4 28.037 214 124 4 70 280 8 194 1.51e-24 102
Msa0114960 AT2G39270.1 32.804 189 110 3 83 255 71 258 1.53e-24 104
Msa0114960 AT5G26667.1 28.972 214 122 5 70 280 8 194 2.08e-24 101
Msa0114960 AT4G25280.1 36.508 126 77 2 76 200 53 176 4.79e-21 93.6
Msa0114960 AT4G25280.2 36.508 126 77 2 76 200 53 176 4.79e-21 93.6
Msa0114960 AT3G60180.1 28.846 208 112 5 79 280 24 201 9.89e-21 91.3
Msa0114960 AT3G60180.2 28.846 208 112 5 79 280 24 201 9.89e-21 91.3

Find 139 sgRNAs with CRISPR-Local

Find 530 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACTGTATTGATAAATATTA+TGG 0.153013 1_3:+33407413 Msa0114960:three_prime_UTR
TCATCCACGGTAGGCCTTTC+AGG 0.177422 1_3:-33406847 None:intergenic
TTTATATTGTAGTGTGTTAT+AGG 0.178691 1_3:-33407606 None:intergenic
ATGTGAATTAATTGTTAATA+AGG 0.185758 1_3:+33399625 Msa0114960:CDS
TAATGAACCTTGGGTCTTAA+TGG 0.197046 1_3:-33399431 None:intergenic
CCAAAACCCTGAGGCTTTCT+TGG 0.199207 1_3:-33407066 None:intergenic
GACAATTTGCCAAGTGATTA+TGG 0.208115 1_3:+33407273 Msa0114960:three_prime_UTR
TTAGCTTGTTACAGGATAAA+TGG 0.229969 1_3:+33403981 Msa0114960:intron
CCAAGAAAGCCTCAGGGTTT+TGG 0.269146 1_3:+33407066 Msa0114960:CDS
GTTGGATATACAGGATTTAA+AGG 0.272534 1_3:+33405894 Msa0114960:intron
TGATAGATCTTGCCAGTTAC+TGG 0.281302 1_3:-33402591 None:intergenic
TGCGAAGATGTTAAGCAAAA+AGG 0.292697 1_3:+33401776 Msa0114960:CDS
TCTTTGAAAACTTCTTCTTT+TGG 0.295160 1_3:-33403402 None:intergenic
CTTGGGTCTTAATGGCAAAT+TGG 0.299518 1_3:-33399423 None:intergenic
TTCATGGATTGGGGTGATTA+TGG 0.315840 1_3:+33405044 Msa0114960:CDS
GTAGCAGCTGGAACAGAAAT+AGG 0.320053 1_3:+33401565 Msa0114960:CDS
TTAGCATTGATTAGGATAAC+TGG 0.329268 1_3:-33405943 None:intergenic
GCAAGATGACATGTATTTCT+TGG 0.330998 1_3:+33405688 Msa0114960:CDS
TTACTCAAACATAACAAATA+AGG 0.331154 1_3:+33403275 Msa0114960:CDS
ACCATTTCTGGATTCAGTTC+AGG 0.335973 1_3:-33404667 None:intergenic
CCTTAAGCTTAGCATTGATT+AGG 0.344833 1_3:-33405951 None:intergenic
CCTAATCAATGCTAAGCTTA+AGG 0.348240 1_3:+33405951 Msa0114960:CDS
ATGGGAGAAGGTGCTCTTGC+TGG 0.349850 1_3:+33404981 Msa0114960:CDS
GCTTTGATTTCTTCCGTCTC+TGG 0.352964 1_3:-33402630 None:intergenic
ATTTCCTCATTTCTCGAGAA+TGG 0.354960 1_3:-33404036 None:intergenic
ATTTGTTATGTTTGAGTAAG+AGG 0.360822 1_3:-33403271 None:intergenic
ATACAGGATGTTTATCGAAT+TGG 0.361361 1_3:+33404753 Msa0114960:intron
TTGGCATATTTACAGATTGA+TGG 0.365193 1_3:+33403372 Msa0114960:intron
GAAATTAATGATTCCTTTGA+AGG 0.373785 1_3:+33406868 Msa0114960:CDS
GTCCTGCAGGTTTGTGTACA+GGG 0.375768 1_3:+33404954 Msa0114960:intron
CCAAGTGATTATGGTAAAAT+CGG 0.379482 1_3:+33407282 Msa0114960:three_prime_UTR
GGATTAGTGCACATATCAAC+TGG 0.382470 1_3:+33401523 Msa0114960:CDS
TGTCCTGCAGGTTTGTGTAC+AGG 0.384124 1_3:+33404953 Msa0114960:intron
GCACTTTCATTTGCCAATGA+TGG 0.388368 1_3:+33404804 Msa0114960:CDS
AGAGTGAAAATAGTGAAATC+TGG 0.391130 1_3:+33403459 Msa0114960:CDS
TTTCCTCATTTCTCGAGAAT+GGG 0.392958 1_3:-33404035 None:intergenic
TGAGGGGATGTAGGAGGAAG+AGG 0.397951 1_3:-33399273 None:intergenic
CGACTTCCAGCAAGCTGTAA+TGG 0.401505 1_3:-33405008 None:intergenic
CCATTGAAGGTGATGATATC+AGG 0.404203 1_3:+33399575 Msa0114960:CDS
AAGAGTTCTTGAGGGGATGT+AGG 0.407056 1_3:-33399282 None:intergenic
GGAATGCCATTACAGCTTGC+TGG 0.407333 1_3:+33405002 Msa0114960:CDS
CTTCTTAATCACTAGACAAT+GGG 0.416346 1_3:+33406442 Msa0114960:intron
ATATCAGGTGCACCTGCATC+TGG 0.416894 1_3:+33399590 Msa0114960:CDS
TCGACAGAAGCGTTGGTAGA+AGG 0.427371 1_3:+33402562 Msa0114960:CDS
CGGAGTTTGTAGTGCAACTT+GGG 0.436500 1_3:+33407302 Msa0114960:three_prime_UTR
GGAATGTTATTTAGTCTAGT+AGG 0.438922 1_3:-33404013 None:intergenic
TCGGAGTTTGTAGTGCAACT+TGG 0.441725 1_3:+33407301 Msa0114960:three_prime_UTR
TGAGGAAGAAGAGTTCTTGA+GGG 0.446159 1_3:-33399290 None:intergenic
CTCCACAAGCGAGCCATTGA+AGG 0.448956 1_3:+33399562 Msa0114960:CDS
GGAGTGTGTTAGAACTTAGA+AGG 0.450534 1_3:-33407585 None:intergenic
TTTCTCTAGACTCTCAGCTT+GGG 0.455707 1_3:-33401831 None:intergenic
GATGTAGGAGGAAGAGGGTG+TGG 0.457226 1_3:-33399267 None:intergenic
GGTTTGTGTACAGGGGTCAA+TGG 0.457274 1_3:+33404962 Msa0114960:intron
TCCTGAACTGAATCCAGAAA+TGG 0.460854 1_3:+33404666 Msa0114960:CDS
AGAAGGTTAGATCCAGTAAC+TGG 0.461130 1_3:+33402579 Msa0114960:CDS
ACTGTATTGATAAATATTAT+GGG 0.461299 1_3:+33407414 Msa0114960:three_prime_UTR
TGAGTTCCCTTGCCAGATGC+AGG 0.462999 1_3:-33399602 None:intergenic
CCTGATATCATCACCTTCAA+TGG 0.464859 1_3:-33399575 None:intergenic
ATGAGCCACATTGCTCTCAA+TGG 0.464885 1_3:-33399219 None:intergenic
GAAGAAAATAAAAGAGAATG+AGG 0.471223 1_3:-33399308 None:intergenic
ACAAAGGAGAAATTATCAAC+TGG 0.472267 1_3:-33407488 None:intergenic
CACCTTCAATGGCTCGCTTG+TGG 0.474202 1_3:-33399564 None:intergenic
TTGGTTGCTTGGCTTTAATG+TGG 0.477788 1_3:+33399168 None:intergenic
TGGGGTGATTATGGTGCAAA+AGG 0.479166 1_3:+33405053 Msa0114960:CDS
TGGTTGCTTGGCTTTAATGT+GGG 0.480282 1_3:+33399169 None:intergenic
TAGGATAACTGGTCTGTGTT+CGG 0.482799 1_3:-33405932 None:intergenic
AATGGAACCAAGAAAGCCTC+AGG 0.490812 1_3:+33407059 Msa0114960:CDS
ATGAGGAAGAAGAGTTCTTG+AGG 0.491766 1_3:-33399291 None:intergenic
TTATCGAATTGGTACACTGT+TGG 0.491969 1_3:+33404764 Msa0114960:CDS
GTTTGTGTACAGGGGTCAAT+GGG 0.495441 1_3:+33404963 Msa0114960:CDS
CTAAGAGCAGAAGTAGCAGC+TGG 0.501347 1_3:+33401553 Msa0114960:CDS
GTTCATGAATGCTGGTCGCT+TGG 0.503110 1_3:+33401603 Msa0114960:CDS
ACACAGAGGGCCATCAATGA+TGG 0.507793 1_3:+33404085 Msa0114960:CDS
GTGGCTCCTCAAAATGCTGT+AGG 0.509632 1_3:+33405710 Msa0114960:CDS
GAGGGGATGTAGGAGGAAGA+GGG 0.512281 1_3:-33399272 None:intergenic
GCAAAAGAGTTCATGAATGC+TGG 0.520094 1_3:+33401595 Msa0114960:CDS
AGTTCTTGAGGGGATGTAGG+AGG 0.522440 1_3:-33399279 None:intergenic
ACAGCTGTCACAATTTCATC+AGG 0.523953 1_3:-33401628 None:intergenic
CAAAAGAGTAGAAGAGTCGC+CGG 0.526347 1_3:+33406792 Msa0114960:CDS
CAATGATGGAAAACGTGTAA+AGG 0.528261 1_3:+33404818 Msa0114960:CDS
AGGGCAAGCATCTTTGATCC+AGG 0.537524 1_3:+33403854 Msa0114960:CDS
CACGGTAGGCCTTTCAGGAA+AGG 0.539847 1_3:-33406842 None:intergenic
TTGTACAGCTCGTAACGGTA+TGG 0.541143 1_3:-33406772 None:intergenic
AGGTGCACCTGCATCTGGCA+AGG 0.542456 1_3:+33399595 Msa0114960:CDS
AAAGGAACCTTCATCAACAT+TGG 0.543502 1_3:+33405071 Msa0114960:CDS
TGGTCTGTGTTCGGCAGCAG+TGG 0.545359 1_3:-33405923 None:intergenic
ATCTTGAGAATTTCAGAAGA+GGG 0.547915 1_3:+33407368 Msa0114960:three_prime_UTR
TTGTGCAGGGGCTCGTTGAG+TGG 0.548227 1_3:+33407185 Msa0114960:intron
GAGTGTTAAAGTTGTGGTGT+TGG 0.549145 1_3:-33399367 None:intergenic
CAATTTGCCATTAAGACCCA+AGG 0.551534 1_3:+33399424 Msa0114960:CDS
TCTAATACGATATACACATC+AGG 0.552254 1_3:-33401866 None:intergenic
GGAATCATTAATTTCATCCA+CGG 0.552599 1_3:-33406860 None:intergenic
TTGATTTCTTCCGTCTCTGG+CGG 0.555702 1_3:-33402627 None:intergenic
TATGGAACCAATGTTGATGA+AGG 0.558497 1_3:-33405078 None:intergenic
GGTGTGCAACATTGTTGCTA+CGG 0.558759 1_3:-33399246 None:intergenic
TCATTAATTTCATCCACGGT+AGG 0.560941 1_3:-33406856 None:intergenic
ATTGGCATGTCTGCTGAAGT+TGG 0.561911 1_3:-33399405 None:intergenic
GAGGAAGAAGAGTTCTTGAG+GGG 0.562077 1_3:-33399289 None:intergenic
TCCTGCAGGTTTGTGTACAG+GGG 0.564656 1_3:+33404955 Msa0114960:intron
TTCATCAACATTGGTTCCAT+AGG 0.570069 1_3:+33405080 Msa0114960:CDS
AAAAGAGTAGAAGAGTCGCC+GGG 0.572875 1_3:+33406793 Msa0114960:CDS
TTCCCCATTCTCGAGAAATG+AGG 0.574307 1_3:+33404032 Msa0114960:CDS
TTCCTCATTTCTCGAGAATG+GGG 0.575872 1_3:-33404034 None:intergenic
ATATATATGTTAGGTAACAA+AGG 0.583064 1_3:-33407504 None:intergenic
TGCATAATACCACTAGAAGC+AGG 0.583506 1_3:-33406351 None:intergenic
CAGGATTTACCTGCTTCTAG+TGG 0.583806 1_3:+33406342 Msa0114960:intron
GTTTGTAGTGCAACTTGGGG+TGG 0.588002 1_3:+33407306 Msa0114960:three_prime_UTR
TGGCTCCTCAAAATGCTGTA+GGG 0.588324 1_3:+33405711 Msa0114960:CDS
ATTCTGATCGACAGAAGCGT+TGG 0.589630 1_3:+33402555 Msa0114960:CDS
GATCTTGAGAATTTCAGAAG+AGG 0.596054 1_3:+33407367 Msa0114960:three_prime_UTR
AGATGACATGTATTTCTTGG+TGG 0.597196 1_3:+33405691 Msa0114960:CDS
GTGTGCAACATTGTTGCTAC+GGG 0.598580 1_3:-33399245 None:intergenic
GATATTGAGTGTTAAAGTTG+TGG 0.600244 1_3:-33399373 None:intergenic
TCTAATCTCAGGTGCAGCGG+AGG 0.603873 1_3:+33405658 Msa0114960:intron
GGTGCACCTGCATCTGGCAA+GGG 0.604640 1_3:+33399596 Msa0114960:CDS
TTGAGAATTTCAGAAGAGGG+TGG 0.606985 1_3:+33407371 Msa0114960:three_prime_UTR
GGTAGGCCTTTCAGGAAAGG+TGG 0.629624 1_3:-33406839 None:intergenic
AGTAACTCGTCCTGATGACA+CGG 0.633451 1_3:+33402659 Msa0114960:CDS
CTTTCCTGAAAGGCCTACCG+TGG 0.636569 1_3:+33406843 Msa0114960:CDS
GTACAGGGGTCAATGGGAGA+AGG 0.638754 1_3:+33404969 Msa0114960:CDS
CAGCTCGTAACGGTATGGAT+AGG 0.640285 1_3:-33406767 None:intergenic
GATTAGTGCACATATCAACT+GGG 0.641321 1_3:+33401524 Msa0114960:CDS
GTGAAAATAGTGAAATCTGG+AGG 0.645858 1_3:+33403462 Msa0114960:CDS
AGACGGAAGAAATCAAAGCA+AGG 0.664626 1_3:+33402634 Msa0114960:CDS
TTGTTACAGGATAAATGGAG+AGG 0.665409 1_3:+33403986 Msa0114960:intron
AATATAACTAGTATCATGTG+AGG 0.665527 1_3:-33407437 None:intergenic
ATTTCTAATCTCAGGTGCAG+CGG 0.669501 1_3:+33405655 Msa0114960:intron
CAGCTTGGGATAAACTACGA+GGG 0.691752 1_3:-33401817 None:intergenic
ATGGAACCAAGAAAGCCTCA+GGG 0.692901 1_3:+33407060 Msa0114960:CDS
GGAGTTTGTAGTGCAACTTG+GGG 0.696352 1_3:+33407303 Msa0114960:three_prime_UTR
TTCTTAATCACTAGACAATG+GGG 0.702647 1_3:+33406443 Msa0114960:intron
TGGTGTTGGAGAAGTAAACA+TGG 0.705251 1_3:-33399353 None:intergenic
TGTGCTACTAGCTACACAGA+GGG 0.720328 1_3:+33404072 Msa0114960:CDS
TGTTTCTAACCAAAACCCTG+AGG 0.721195 1_3:-33407075 None:intergenic
ATTCCTTTGAAGGAAAACCG+AGG 0.723762 1_3:+33406878 Msa0114960:CDS
AAAATCCATTGAGAGCAATG+TGG 0.729901 1_3:+33399214 Msa0114960:five_prime_UTR
ATTAGTGCACATATCAACTG+GGG 0.754100 1_3:+33401525 Msa0114960:CDS
TCAGCTTGGGATAAACTACG+AGG 0.768219 1_3:-33401818 None:intergenic
ATGTGCTACTAGCTACACAG+AGG 0.775103 1_3:+33404071 Msa0114960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! ATATATATATATATATATTA+GGG - chr1_3:33405386-33405405 None:intergenic 0.0%
!! TATATATATATATATATATT+AGG - chr1_3:33405387-33405406 None:intergenic 0.0%
!!! AAACATAGTTAATATATTTT+TGG - chr1_3:33400881-33400900 None:intergenic 10.0%
!!! AATTAACATTTTACTTATAT+GGG + chr1_3:33405292-33405311 Msa0114960:intron 10.0%
!!! TTTTTTTATTCTTTTTGGTA+AGG + chr1_3:33399517-33399536 Msa0114960:intron 15.0%
!! ATGTGAATTAATTGTTAATA+AGG + chr1_3:33399625-33399644 Msa0114960:CDS 15.0%
!!! AATGATATTAATGGATAATT+GGG - chr1_3:33400699-33400718 None:intergenic 15.0%
!! ATATAAGTTGTTCATTAATT+AGG + chr1_3:33400990-33401009 Msa0114960:intron 15.0%
!!! CATTGTAAAATAACTATTTT+TGG + chr1_3:33401228-33401247 Msa0114960:intron 15.0%
!! AAAAAGAAAAAGAAAACAAA+CGG - chr1_3:33401726-33401745 None:intergenic 15.0%
!! AAAATTATAACTTATAACTG+AGG + chr1_3:33404502-33404521 Msa0114960:intron 15.0%
!! AAATAGATGGATAAAATAAA+AGG - chr1_3:33405236-33405255 None:intergenic 15.0%
!!! CAATTAACATTTTACTTATA+TGG + chr1_3:33405291-33405310 Msa0114960:intron 15.0%
!!! CAATTCTTTTTTCTATTTAT+AGG - chr1_3:33405488-33405507 None:intergenic 15.0%
!!! ATTAGTTTTGTATATTACAT+TGG - chr1_3:33406307-33406326 None:intergenic 15.0%
!!! AACTGTATTGATAAATATTA+TGG + chr1_3:33407413-33407432 Msa0114960:three_prime_UTR 15.0%
!!! ACTGTATTGATAAATATTAT+GGG + chr1_3:33407414-33407433 Msa0114960:three_prime_UTR 15.0%
!! TAAATTCATTAATGAACCTT+GGG - chr1_3:33399443-33399462 None:intergenic 20.0%
!! ATAAATTCATTAATGAACCT+TGG - chr1_3:33399444-33399463 None:intergenic 20.0%
!!! GATTTTTGTTTACTAGTTAA+TGG + chr1_3:33399482-33399501 Msa0114960:intron 20.0%
!!! ATTTCAAGTAAAAAACAAGA+GGG - chr1_3:33399668-33399687 None:intergenic 20.0%
!!! TATTTCAAGTAAAAAACAAG+AGG - chr1_3:33399669-33399688 None:intergenic 20.0%
!!! TGTTTTTTACTTGAAATACT+CGG + chr1_3:33399671-33399690 Msa0114960:intron 20.0%
!!! AATACTCATTTTATAAGTGA+GGG - chr1_3:33399716-33399735 None:intergenic 20.0%
!!! AAATACTCATTTTATAAGTG+AGG - chr1_3:33399717-33399736 None:intergenic 20.0%
!! ATGTTAAGTTAAAGATGTAT+AGG + chr1_3:33399771-33399790 Msa0114960:intron 20.0%
!!! TTGTGTTATTCACAAATAAA+TGG - chr1_3:33399913-33399932 None:intergenic 20.0%
!!! GAATGATATTAATGGATAAT+TGG - chr1_3:33400700-33400719 None:intergenic 20.0%
!!! TTCTAAAGGAATGATATTAA+TGG - chr1_3:33400708-33400727 None:intergenic 20.0%
!! TATGACAAAATTTCTTCTAA+AGG - chr1_3:33400722-33400741 None:intergenic 20.0%
!! TTAAAAAGAAAGAGATCTAT+AGG - chr1_3:33400778-33400797 None:intergenic 20.0%
!! AGAATATAAAACATTCCATT+TGG - chr1_3:33400941-33400960 None:intergenic 20.0%
!! TAAATGAAAAATGACACAAA+GGG - chr1_3:33401163-33401182 None:intergenic 20.0%
!! TTAAATGAAAAATGACACAA+AGG - chr1_3:33401164-33401183 None:intergenic 20.0%
!! TTGTCGTTAAATAGAATAAA+AGG + chr1_3:33401257-33401276 Msa0114960:intron 20.0%
!!! TTGATTGTTATTGATAAAAG+TGG + chr1_3:33401421-33401440 Msa0114960:intron 20.0%
!!! TTTTCTTTTTCATTTGTAGA+TGG + chr1_3:33401736-33401755 Msa0114960:intron 20.0%
!! ATTAGAAAAGTTTAGTAACT+TGG - chr1_3:33402517-33402536 None:intergenic 20.0%
!!! ACTAAACTTTTCTAATATTC+AGG + chr1_3:33402521-33402540 Msa0114960:intron 20.0%
!!! GTACTTATTTAATCATTTTC+AGG + chr1_3:33403200-33403219 Msa0114960:intron 20.0%
!!! CATTTTGCTTATAGATATTT+AGG - chr1_3:33403236-33403255 None:intergenic 20.0%
!! TTACTCAAACATAACAAATA+AGG + chr1_3:33403275-33403294 Msa0114960:CDS 20.0%
!!! TAATTTTCTGAAAGTAATAC+TGG - chr1_3:33404285-33404304 None:intergenic 20.0%
!!! GTTTTCATTCCAAATATAAT+AGG + chr1_3:33404630-33404649 Msa0114960:intron 20.0%
!!! AACCATATATTTTTGTATAC+AGG + chr1_3:33404737-33404756 Msa0114960:intron 20.0%
!! ATCCTGTATACAAAAATATA+TGG - chr1_3:33404742-33404761 None:intergenic 20.0%
!! TTCTTTATGTAGAGATTAAA+TGG + chr1_3:33404878-33404897 Msa0114960:intron 20.0%
!! AAATAAAAGGTTAGACATTA+AGG - chr1_3:33405223-33405242 None:intergenic 20.0%
!!! ATTTTATCCATCTATTTTCT+TGG + chr1_3:33405239-33405258 Msa0114960:intron 20.0%
!!! TTCTTTTTTCTATTTATAGG+AGG - chr1_3:33405485-33405504 None:intergenic 20.0%
!! ATAAGGAAAATATATCAGTA+TGG - chr1_3:33405599-33405618 None:intergenic 20.0%
!!! ATACTGATATATTTTCCTTA+TGG + chr1_3:33405598-33405617 Msa0114960:intron 20.0%
!! GAATTGTATTATTGATGTAA+GGG + chr1_3:33405733-33405752 Msa0114960:intron 20.0%
!! AATTGTATTATTGATGTAAG+GGG + chr1_3:33405734-33405753 Msa0114960:intron 20.0%
!!! ACATATCTTAATATTTTCTG+AGG + chr1_3:33405872-33405891 Msa0114960:intron 20.0%
!! TACCATGTTACAATATAATT+AGG - chr1_3:33406140-33406159 None:intergenic 20.0%
!! ATTTATTCGAGAGAAAAATA+AGG + chr1_3:33406407-33406426 Msa0114960:intron 20.0%
!!! ATATTTCTGTCATTAAACTA+TGG + chr1_3:33406582-33406601 Msa0114960:intron 20.0%
!! AAGTATAAACTTAGATCAAT+AGG - chr1_3:33406724-33406743 None:intergenic 20.0%
!! AAAAAACTAATAATAGATCG+AGG - chr1_3:33407106-33407125 None:intergenic 20.0%
!!! TCAGAAAATTTAAGACTAAA+GGG - chr1_3:33407132-33407151 None:intergenic 20.0%
!!! TTCAGAAAATTTAAGACTAA+AGG - chr1_3:33407133-33407152 None:intergenic 20.0%
!! ATATATATGTTAGGTAACAA+AGG - chr1_3:33407507-33407526 None:intergenic 20.0%
! GAAGAAAATAAAAGAGAATG+AGG - chr1_3:33399311-33399330 None:intergenic 25.0%
! ACCTATCAATTACAGAATTT+CGG + chr1_3:33399998-33400017 Msa0114960:intron 25.0%
!! AAATTTTCTAACCCAGTATT+AGG - chr1_3:33400102-33400121 None:intergenic 25.0%
! ATATTGAACACATACAAGAA+GGG - chr1_3:33400376-33400395 None:intergenic 25.0%
!! TTTAGATCAAAACCAAGTTT+TGG - chr1_3:33400519-33400538 None:intergenic 25.0%
!! TATTAATGGATAATTGGGTA+TGG - chr1_3:33400694-33400713 None:intergenic 25.0%
! ATATAAAACATTCCATTTGG+TGG - chr1_3:33400938-33400957 None:intergenic 25.0%
! AATGTGCATTCATAGAAATA+AGG + chr1_3:33401457-33401476 Msa0114960:intron 25.0%
! ATGTGCATTCATAGAAATAA+GGG + chr1_3:33401458-33401477 Msa0114960:intron 25.0%
!!! ACTGTTGAAGTATCTTTTTT+CGG + chr1_3:33401916-33401935 Msa0114960:intron 25.0%
! GAAATTTAGCATAAGATGTT+TGG - chr1_3:33402011-33402030 None:intergenic 25.0%
!!! TTTTCTGGCTTTAAGAAAAT+TGG - chr1_3:33402033-33402052 None:intergenic 25.0%
!! CCAATATTTGATGAATTTTC+TGG - chr1_3:33402048-33402067 None:intergenic 25.0%
! CCAGAAAATTCATCAAATAT+TGG + chr1_3:33402045-33402064 Msa0114960:intron 25.0%
! CTCGTTAAATTAAGTGAATT+AGG - chr1_3:33402116-33402135 None:intergenic 25.0%
! CTAATTCACTTAATTTAACG+AGG + chr1_3:33402114-33402133 Msa0114960:intron 25.0%
! CAAAAAAAGAAAAGAAAACG+AGG - chr1_3:33402709-33402728 None:intergenic 25.0%
! TTCATCATTGCAATAAGAAA+AGG + chr1_3:33402786-33402805 Msa0114960:intron 25.0%
! CAAACTGAAAAAGTTATTCA+TGG - chr1_3:33402850-33402869 None:intergenic 25.0%
! TTACATTCTCAAAAATACTG+TGG - chr1_3:33402890-33402909 None:intergenic 25.0%
! TGAGAATGTAAAAATATGAG+TGG + chr1_3:33402899-33402918 Msa0114960:intron 25.0%
!! TCTATATTTTGTGTCTCATT+TGG + chr1_3:33403081-33403100 Msa0114960:intron 25.0%
!! CTATATTTTGTGTCTCATTT+GGG + chr1_3:33403082-33403101 Msa0114960:intron 25.0%
!!! ATTTGTTATGTTTGAGTAAG+AGG - chr1_3:33403274-33403293 None:intergenic 25.0%
! ATTGCCACTGTTAATTTATT+TGG + chr1_3:33403353-33403372 Msa0114960:intron 25.0%
! TATGCCAAATAAATTAACAG+TGG - chr1_3:33403360-33403379 None:intergenic 25.0%
!!! TCTTTGAAAACTTCTTCTTT+TGG - chr1_3:33403405-33403424 None:intergenic 25.0%
! AATTACATCTTTCTGCTATT+CGG + chr1_3:33403657-33403676 Msa0114960:intron 25.0%
! GAAACTCTACTTACATTTAT+TGG + chr1_3:33403718-33403737 Msa0114960:intron 25.0%
!!! TTTATTGGTCTTAATTGACA+TGG + chr1_3:33403733-33403752 Msa0114960:intron 25.0%
! AAATAAGAAGCGATATACAA+AGG - chr1_3:33403957-33403976 None:intergenic 25.0%
! TGATGTCAACCTATTATATT+TGG - chr1_3:33404642-33404661 None:intergenic 25.0%
! AGACATTAAGAGAAAATCAA+AGG - chr1_3:33404711-33404730 None:intergenic 25.0%
!!! TCGAAAGATTTTAGAATTCA+TGG + chr1_3:33405028-33405047 Msa0114960:CDS 25.0%
!!! AGATTTTAGAATTCATGGAT+TGG + chr1_3:33405033-33405052 Msa0114960:CDS 25.0%
!!! GATTTTAGAATTCATGGATT+GGG + chr1_3:33405034-33405053 Msa0114960:CDS 25.0%
!!! ATTTTAGAATTCATGGATTG+GGG + chr1_3:33405035-33405054 Msa0114960:CDS 25.0%
! AACCAGTTAAAATACAAAAG+CGG - chr1_3:33405161-33405180 None:intergenic 25.0%
! TCTTATTGTGAGTATCTATA+CGG + chr1_3:33405558-33405577 Msa0114960:intron 25.0%
!!! CTTATGGTTTGTTTTGATAT+CGG + chr1_3:33405614-33405633 Msa0114960:intron 25.0%
! GGAATTGTATTATTGATGTA+AGG + chr1_3:33405732-33405751 Msa0114960:intron 25.0%
!!! ATCTTAATATTTTCTGAGGT+TGG + chr1_3:33405876-33405895 Msa0114960:intron 25.0%
! ATAAACATGAACTACAGTAT+AGG - chr1_3:33405992-33406011 None:intergenic 25.0%
! GACCTAATTATATTGTAACA+TGG + chr1_3:33406135-33406154 Msa0114960:intron 25.0%
!! ATAGAATATCTTTGTTTGCA+TGG + chr1_3:33406212-33406231 Msa0114960:intron 25.0%
! TAATACATTTCTATGAATCC+AGG + chr1_3:33406323-33406342 Msa0114960:intron 25.0%
! GAAAACACGTTGAAATATTT+CGG - chr1_3:33406663-33406682 None:intergenic 25.0%
!! AAATATTTCAACGTGTTTTC+AGG + chr1_3:33406663-33406682 Msa0114960:intron 25.0%
! GAAATTAATGATTCCTTTGA+AGG + chr1_3:33406868-33406887 Msa0114960:CDS 25.0%
!! ATCTGAAAATTTTGCAGAAA+TGG + chr1_3:33407041-33407060 Msa0114960:intron 25.0%
!!! TTTTCTGAAGCTATTTTCAT+TGG + chr1_3:33407144-33407163 Msa0114960:intron 25.0%
! AATATAACTAGTATCATGTG+AGG - chr1_3:33407440-33407459 None:intergenic 25.0%
GATATTGAGTGTTAAAGTTG+TGG - chr1_3:33399376-33399395 None:intergenic 30.0%
TAAAGATGTATAGGAGTCAA+TGG + chr1_3:33399780-33399799 Msa0114960:intron 30.0%
TCCGAAATTCTGTAATTGAT+AGG - chr1_3:33400002-33400021 None:intergenic 30.0%
! GGTTAGAAAATTTTGCATGA+TGG + chr1_3:33400109-33400128 Msa0114960:intron 30.0%
!! CAGTCTTTGAAATATAGTGT+TGG - chr1_3:33400155-33400174 None:intergenic 30.0%
CAACACTATATTTCAAAGAC+TGG + chr1_3:33400153-33400172 Msa0114960:intron 30.0%
GATATTGAACACATACAAGA+AGG - chr1_3:33400377-33400396 None:intergenic 30.0%
TGCTTATATTTCATTCGAGA+AGG + chr1_3:33400816-33400835 Msa0114960:intron 30.0%
!! AGGACATTTTGAGTAACAAA+CGG + chr1_3:33401010-33401029 Msa0114960:intron 30.0%
CAGTGATAGATATTATGAGA+TGG + chr1_3:33401358-33401377 Msa0114960:intron 30.0%
GATAGATATTATGAGATGGA+AGG + chr1_3:33401362-33401381 Msa0114960:intron 30.0%
!! TCTTTTTCATTTGTAGATGG+TGG + chr1_3:33401739-33401758 Msa0114960:intron 30.0%
TCTAATACGATATACACATC+AGG - chr1_3:33401869-33401888 None:intergenic 30.0%
!!! AAGTATCTTTTTTCGGATGT+TGG + chr1_3:33401923-33401942 Msa0114960:intron 30.0%
TTCTGTTTGCAAAGAGTTAA+TGG - chr1_3:33401952-33401971 None:intergenic 30.0%
AAAGCACATACATTACTCAA+TGG - chr1_3:33402455-33402474 None:intergenic 30.0%
AAAAGTTTAGTAACTTGGCA+AGG - chr1_3:33402512-33402531 None:intergenic 30.0%
TCATTGCAATAAGAAAAGGA+TGG + chr1_3:33402790-33402809 Msa0114960:intron 30.0%
!!! AACTTTTTCAGTTTGTTGCA+TGG + chr1_3:33402855-33402874 Msa0114960:intron 30.0%
CTTCTCAGTAATAGCATTAA+GGG + chr1_3:33402972-33402991 Msa0114960:intron 30.0%
TAATAGCATTAAGGGTCTAA+AGG + chr1_3:33402980-33402999 Msa0114960:intron 30.0%
CAAAATATAGACAGAAAGAG+AGG - chr1_3:33403072-33403091 None:intergenic 30.0%
ATAACTATGCATTGCAGAAA+TGG - chr1_3:33403121-33403140 None:intergenic 30.0%
TGCATAGTTATGAAGCATAA+AGG + chr1_3:33403130-33403149 Msa0114960:intron 30.0%
TTGGCATATTTACAGATTGA+TGG + chr1_3:33403372-33403391 Msa0114960:intron 30.0%
! TGAAAACTTCTTCTTTTGGA+CGG - chr1_3:33403401-33403420 None:intergenic 30.0%
AGAGTGAAAATAGTGAAATC+TGG + chr1_3:33403459-33403478 Msa0114960:CDS 30.0%
GATTCCCTACAAATATATCA+TGG - chr1_3:33403523-33403542 None:intergenic 30.0%
CTATGTCAATTGTTAAACTC+TGG - chr1_3:33403602-33403621 None:intergenic 30.0%
!!! TTCGGTTTTGTTATGATATG+AGG + chr1_3:33403675-33403694 Msa0114960:intron 30.0%
!!! TCGGTTTTGTTATGATATGA+GGG + chr1_3:33403676-33403695 Msa0114960:intron 30.0%
AGATGGTAGTACTTTGTAAA+AGG + chr1_3:33403878-33403897 Msa0114960:intron 30.0%
!!! ATTTTGCTTTAGCTTGTTAC+AGG + chr1_3:33403973-33403992 Msa0114960:intron 30.0%
!! TTAGCTTGTTACAGGATAAA+TGG + chr1_3:33403981-33404000 Msa0114960:intron 30.0%
! GGAATGTTATTTAGTCTAGT+AGG - chr1_3:33404016-33404035 None:intergenic 30.0%
TGATGGAAAAACTAGGTTAA+AGG + chr1_3:33404102-33404121 Msa0114960:CDS 30.0%
ACTACAATTACATACAGTTC+TGG - chr1_3:33404146-33404165 None:intergenic 30.0%
TAGAATACTCTTCTTACGAA+AGG - chr1_3:33404401-33404420 None:intergenic 30.0%
ATTAAAAACAAGACAAGTCC+AGG - chr1_3:33404576-33404595 None:intergenic 30.0%
ATACAGGATGTTTATCGAAT+TGG + chr1_3:33404753-33404772 Msa0114960:intron 30.0%
ATGTTAGAACAAAAGGAGTA+AGG - chr1_3:33404850-33404869 None:intergenic 30.0%
GTGTTGTATGTTAGAACAAA+AGG - chr1_3:33404857-33404876 None:intergenic 30.0%
!!! GCTTTTGTATTTTAACTGGT+TGG + chr1_3:33405160-33405179 Msa0114960:intron 30.0%
GATACTCACAATAAGATGTT+CGG - chr1_3:33405554-33405573 None:intergenic 30.0%
CTTATTGTGAGTATCTATAC+GGG + chr1_3:33405559-33405578 Msa0114960:intron 30.0%
CGATATCAAAACAAACCATA+AGG - chr1_3:33405616-33405635 None:intergenic 30.0%
ACTTGTGAATTTCTAATCTC+AGG + chr1_3:33405647-33405666 Msa0114960:intron 30.0%
AATCCATCAAGCTAAATAGA+AGG - chr1_3:33405806-33405825 None:intergenic 30.0%
GTTGGATATACAGGATTTAA+AGG + chr1_3:33405894-33405913 Msa0114960:intron 30.0%
!! TTAGCATTGATTAGGATAAC+TGG - chr1_3:33405946-33405965 None:intergenic 30.0%
TTACAAGTTGTAATATCCCT+GGG - chr1_3:33406242-33406261 None:intergenic 30.0%
TGAATGAACTGTTCAAAAAG+GGG - chr1_3:33406265-33406284 None:intergenic 30.0%
GTGAATGAACTGTTCAAAAA+GGG - chr1_3:33406266-33406285 None:intergenic 30.0%
TGTGAATGAACTGTTCAAAA+AGG - chr1_3:33406267-33406286 None:intergenic 30.0%
AATTGTTATCTTCAACTTGC+TGG - chr1_3:33406390-33406409 None:intergenic 30.0%
TCTTCTTAATCACTAGACAA+TGG + chr1_3:33406441-33406460 Msa0114960:intron 30.0%
CTTCTTAATCACTAGACAAT+GGG + chr1_3:33406442-33406461 Msa0114960:intron 30.0%
TTCTTAATCACTAGACAATG+GGG + chr1_3:33406443-33406462 Msa0114960:intron 30.0%
! TTGAAAGTTGCTACTTGTTT+CGG + chr1_3:33406497-33406516 Msa0114960:intron 30.0%
GGAATCATTAATTTCATCCA+CGG - chr1_3:33406863-33406882 None:intergenic 30.0%
CCAAGTGATTATGGTAAAAT+CGG + chr1_3:33407282-33407301 Msa0114960:three_prime_UTR 30.0%
ATCTTGAGAATTTCAGAAGA+GGG + chr1_3:33407368-33407387 Msa0114960:three_prime_UTR 30.0%
ACAAAGGAGAAATTATCAAC+TGG - chr1_3:33407491-33407510 None:intergenic 30.0%
AAAATCCATTGAGAGCAATG+TGG + chr1_3:33399214-33399233 Msa0114960:five_prime_UTR 35.0%
TAATGAACCTTGGGTCTTAA+TGG - chr1_3:33399434-33399453 None:intergenic 35.0%
! TTTTGGTAAGGCAACAAGAA+AGG + chr1_3:33399529-33399548 Msa0114960:intron 35.0%
CAAGTAAAAAACAAGAGGGA+GGG - chr1_3:33399664-33399683 None:intergenic 35.0%
TCAAGTAAAAAACAAGAGGG+AGG - chr1_3:33399665-33399684 None:intergenic 35.0%
TTCCGATGAATGAATTAACG+CGG - chr1_3:33399747-33399766 None:intergenic 35.0%
CACAAAATAAGGAATTCCAG+AGG - chr1_3:33399856-33399875 None:intergenic 35.0%
!!! GAATTCCTTATTTTGTGCTC+TGG + chr1_3:33399859-33399878 Msa0114960:intron 35.0%
CTAAACCAGAGCACAAAATA+AGG - chr1_3:33399867-33399886 None:intergenic 35.0%
AAGGTCTAAACATCTGTGAT+TGG + chr1_3:33400053-33400072 Msa0114960:intron 35.0%
! GTGATTGGTGTTTGAATTAC+TGG + chr1_3:33400068-33400087 Msa0114960:intron 35.0%
!! TGGTTCTAACTCCTAATACT+GGG + chr1_3:33400088-33400107 Msa0114960:intron 35.0%
!! CTTTGAAATATAGTGTTGGC+AGG - chr1_3:33400151-33400170 None:intergenic 35.0%
GCTTTCTATGATTCTTGCTT+TGG + chr1_3:33400251-33400270 Msa0114960:intron 35.0%
AGGATGTCTTTAACTCGTTA+TGG + chr1_3:33400320-33400339 Msa0114960:intron 35.0%
AACACATACAAGAAGGGAAT+TGG - chr1_3:33400370-33400389 None:intergenic 35.0%
CCATATTGGTATCAGTTCTA+CGG - chr1_3:33400402-33400421 None:intergenic 35.0%
CGTAGAACTGATACCAATAT+GGG + chr1_3:33400400-33400419 Msa0114960:intron 35.0%
!! TTTTGGAAGACTACTAGACA+AGG - chr1_3:33400475-33400494 None:intergenic 35.0%
! TTCCAAAAACAAGAGTGTAC+AGG + chr1_3:33400487-33400506 Msa0114960:intron 35.0%
!!! TTCCTGTACACTCTTGTTTT+TGG - chr1_3:33400492-33400511 None:intergenic 35.0%
TACAGGAAATTGCCAAAACT+TGG + chr1_3:33400504-33400523 Msa0114960:intron 35.0%
!! ATCGGCTGTGTTGATTAAAT+CGG + chr1_3:33400571-33400590 Msa0114960:intron 35.0%
AGCTTATTCTATACACTGGA+AGG - chr1_3:33400600-33400619 None:intergenic 35.0%
TATGGAAACACATAGGTTTG+TGG - chr1_3:33400676-33400695 None:intergenic 35.0%
AATTGGGTATGGAAACACAT+AGG - chr1_3:33400683-33400702 None:intergenic 35.0%
AGATCTATAGGTCAGAATCT+GGG - chr1_3:33400766-33400785 None:intergenic 35.0%
! TAAAACATTCCATTTGGTGG+TGG - chr1_3:33400935-33400954 None:intergenic 35.0%
GATTAGTGCACATATCAACT+GGG + chr1_3:33401524-33401543 Msa0114960:CDS 35.0%
ATTAGTGCACATATCAACTG+GGG + chr1_3:33401525-33401544 Msa0114960:CDS 35.0%
TGGCTTTCAGCATATGAAAA+TGG - chr1_3:33401698-33401717 None:intergenic 35.0%
AAAGAAAACAAACGGATGCA+TGG - chr1_3:33401718-33401737 None:intergenic 35.0%
TGCGAAGATGTTAAGCAAAA+AGG + chr1_3:33401776-33401795 Msa0114960:CDS 35.0%
GCGAAGATGTTAAGCAAAAA+GGG + chr1_3:33401777-33401796 Msa0114960:CDS 35.0%
AAGATGTTAAGCAAAAAGGG+TGG + chr1_3:33401780-33401799 Msa0114960:CDS 35.0%
TCAGACTGTTCTTACAAATG+TGG + chr1_3:33402090-33402109 Msa0114960:intron 35.0%
CTAAATTAACCCACCCAAAT+TGG + chr1_3:33402227-33402246 Msa0114960:intron 35.0%
TGATATCTCTTAACCCACTT+GGG - chr1_3:33402327-33402346 None:intergenic 35.0%
ATGATATCTCTTAACCCACT+TGG - chr1_3:33402328-33402347 None:intergenic 35.0%
!!! TTCTTTTTTTGCTGTCTTCG+TGG + chr1_3:33402718-33402737 Msa0114960:intron 35.0%
TCTTCGTGGATATATATCAC+TGG + chr1_3:33402732-33402751 Msa0114960:intron 35.0%
CTTCGTGGATATATATCACT+GGG + chr1_3:33402733-33402752 Msa0114960:intron 35.0%
TCGCATTTGTAATCAAACAG+AGG + chr1_3:33402922-33402941 Msa0114960:intron 35.0%
CCTTAATGCTATTACTGAGA+AGG - chr1_3:33402974-33402993 None:intergenic 35.0%
CCTTCTCAGTAATAGCATTA+AGG + chr1_3:33402971-33402990 Msa0114960:intron 35.0%
ATGTCATTAATGTCAACCGA+TGG + chr1_3:33403327-33403346 Msa0114960:intron 35.0%
TGTCATTAATGTCAACCGAT+GGG + chr1_3:33403328-33403347 Msa0114960:intron 35.0%
GTGAAAATAGTGAAATCTGG+AGG + chr1_3:33403462-33403481 Msa0114960:CDS 35.0%
ATGGCTGGAGATTGAAAAAT+AGG - chr1_3:33403504-33403523 None:intergenic 35.0%
TCCAGCCATGATATATTTGT+AGG + chr1_3:33403515-33403534 Msa0114960:intron 35.0%
CCAGCCATGATATATTTGTA+GGG + chr1_3:33403516-33403535 Msa0114960:intron 35.0%
!! ATTGGTCTTAATTGACATGG+TGG + chr1_3:33403736-33403755 Msa0114960:intron 35.0%
!! TTGGTCTTAATTGACATGGT+GGG + chr1_3:33403737-33403756 Msa0114960:intron 35.0%
! TATTCAGAAAAACCGATTCC+TGG + chr1_3:33403822-33403841 Msa0114960:intron 35.0%
!!! CCTTTTTTCATACCAGGAAT+CGG - chr1_3:33403837-33403856 None:intergenic 35.0%
CGATTCCTGGTATGAAAAAA+GGG + chr1_3:33403835-33403854 Msa0114960:CDS 35.0%
!! GAAGCTTTTCTAGCACATAA+AGG - chr1_3:33403935-33403954 None:intergenic 35.0%
TTGTTACAGGATAAATGGAG+AGG + chr1_3:33403986-33404005 Msa0114960:intron 35.0%
TTTCCTCATTTCTCGAGAAT+GGG - chr1_3:33404038-33404057 None:intergenic 35.0%
ATTTCCTCATTTCTCGAGAA+TGG - chr1_3:33404039-33404058 None:intergenic 35.0%
!! CCTAGTTTTTCCATCATTGA+TGG - chr1_3:33404098-33404117 None:intergenic 35.0%
! CCATCAATGATGGAAAAACT+AGG + chr1_3:33404095-33404114 Msa0114960:CDS 35.0%
! TGCCATTCTTCCTGTTATTT+GGG + chr1_3:33404177-33404196 Msa0114960:intron 35.0%
AACTGAGGTGAATGAAGTTT+AGG + chr1_3:33404517-33404536 Msa0114960:intron 35.0%
GATGGTCAGATGGAAAAAAT+AGG + chr1_3:33404539-33404558 Msa0114960:intron 35.0%
AAATAGGTTTCACAGTTTCC+TGG + chr1_3:33404555-33404574 Msa0114960:intron 35.0%
GAAGAAGATATCATCAGAGT+AGG - chr1_3:33404609-33404628 None:intergenic 35.0%
AACTGAATCCAGAAATGGTA+CGG + chr1_3:33404671-33404690 Msa0114960:intron 35.0%
AAAAATGTCCGTACCATTTC+TGG - chr1_3:33404682-33404701 None:intergenic 35.0%
TTATCGAATTGGTACACTGT+TGG + chr1_3:33404764-33404783 Msa0114960:CDS 35.0%
! CTTTACACGTTTTCCATCAT+TGG - chr1_3:33404820-33404839 None:intergenic 35.0%
! CAATGATGGAAAACGTGTAA+AGG + chr1_3:33404818-33404837 Msa0114960:CDS 35.0%
AAAGGAACCTTCATCAACAT+TGG + chr1_3:33405071-33405090 Msa0114960:CDS 35.0%
! TATGGAACCAATGTTGATGA+AGG - chr1_3:33405081-33405100 None:intergenic 35.0%
!! TTCATCAACATTGGTTCCAT+AGG + chr1_3:33405080-33405099 Msa0114960:CDS 35.0%
TCAGCTCATTGATATACCTA+TGG - chr1_3:33405099-33405118 None:intergenic 35.0%
TCAATGAGCTGAAACCTTTA+TGG + chr1_3:33405107-33405126 Msa0114960:intron 35.0%
!!! TGCCGCTTTTGTATTTTAAC+TGG + chr1_3:33405156-33405175 Msa0114960:intron 35.0%
!!! GTATTTTAACTGGTTGGAGT+TGG + chr1_3:33405166-33405185 Msa0114960:intron 35.0%
TGGATGACCAAGAAAATAGA+TGG - chr1_3:33405249-33405268 None:intergenic 35.0%
GCAAGATGACATGTATTTCT+TGG + chr1_3:33405688-33405707 Msa0114960:CDS 35.0%
AGATGACATGTATTTCTTGG+TGG + chr1_3:33405691-33405710 Msa0114960:CDS 35.0%
AAGCTAAATAGAAGGTTCAG+AGG - chr1_3:33405798-33405817 None:intergenic 35.0%
!! GAACCTTCTATTTAGCTTGA+TGG + chr1_3:33405800-33405819 Msa0114960:intron 35.0%
TGAAGAAAACAATAGCAGCT+TGG - chr1_3:33405853-33405872 None:intergenic 35.0%
!!! TTTTCTGAGGTTGGATATAC+AGG + chr1_3:33405885-33405904 Msa0114960:intron 35.0%
!! CCTTAAGCTTAGCATTGATT+AGG - chr1_3:33405954-33405973 None:intergenic 35.0%
CCTAATCAATGCTAAGCTTA+AGG + chr1_3:33405951-33405970 Msa0114960:CDS 35.0%
ACAGTATAGGAAACTAGGAA+AGG - chr1_3:33405979-33405998 None:intergenic 35.0%
GAACTACAGTATAGGAAACT+AGG - chr1_3:33405984-33406003 None:intergenic 35.0%
! GGTTATGAGTTCATCAGTTT+TGG - chr1_3:33406082-33406101 None:intergenic 35.0%
GTTACAAGTTGTAATATCCC+TGG - chr1_3:33406243-33406262 None:intergenic 35.0%
!!! CGGATTTTAGAATCCGAATA+GGG - chr1_3:33406643-33406662 None:intergenic 35.0%
!!! TCGGATTTTAGAATCCGAAT+AGG - chr1_3:33406644-33406663 None:intergenic 35.0%
!! TATTTCAACGTGTTTTCAGG+CGG + chr1_3:33406666-33406685 Msa0114960:intron 35.0%
ACTTCACTGCTTTATGATGT+AGG + chr1_3:33406740-33406759 Msa0114960:intron 35.0%
! AGTACATACTTCTCTTTTCC+CGG - chr1_3:33406814-33406833 None:intergenic 35.0%
TCATTAATTTCATCCACGGT+AGG - chr1_3:33406859-33406878 None:intergenic 35.0%
GATAAGAAGATCTAGTACCT+CGG - chr1_3:33406898-33406917 None:intergenic 35.0%
AACTAATAATAGATCGAGGC+TGG - chr1_3:33407102-33407121 None:intergenic 35.0%
! ATGTACCTATTTTCTTGTGC+AGG + chr1_3:33407171-33407190 Msa0114960:intron 35.0%
! TGTACCTATTTTCTTGTGCA+GGG + chr1_3:33407172-33407191 Msa0114960:intron 35.0%
GACAATTTGCCAAGTGATTA+TGG + chr1_3:33407273-33407292 Msa0114960:three_prime_UTR 35.0%
! CCGATTTTACCATAATCACT+TGG - chr1_3:33407285-33407304 None:intergenic 35.0%
GATCTTGAGAATTTCAGAAG+AGG + chr1_3:33407367-33407386 Msa0114960:three_prime_UTR 35.0%
!! TGCTCTCAATGGATTTTCAG+TGG - chr1_3:33399211-33399230 None:intergenic 40.0%
TGAGGAAGAAGAGTTCTTGA+GGG - chr1_3:33399293-33399312 None:intergenic 40.0%
ATGAGGAAGAAGAGTTCTTG+AGG - chr1_3:33399294-33399313 None:intergenic 40.0%
! TGGTGTTGGAGAAGTAAACA+TGG - chr1_3:33399356-33399375 None:intergenic 40.0%
GAGTGTTAAAGTTGTGGTGT+TGG - chr1_3:33399370-33399389 None:intergenic 40.0%
CTTGGGTCTTAATGGCAAAT+TGG - chr1_3:33399426-33399445 None:intergenic 40.0%
CAATTTGCCATTAAGACCCA+AGG + chr1_3:33399424-33399443 Msa0114960:CDS 40.0%
CCTGATATCATCACCTTCAA+TGG - chr1_3:33399578-33399597 None:intergenic 40.0%
CCATTGAAGGTGATGATATC+AGG + chr1_3:33399575-33399594 Msa0114960:CDS 40.0%
CTCCGCGTTAATTCATTCAT+CGG + chr1_3:33399742-33399761 Msa0114960:intron 40.0%
TTGTTGTACGTCACATAGTG+TGG + chr1_3:33399819-33399838 Msa0114960:intron 40.0%
TGTTGTACGTCACATAGTGT+GGG + chr1_3:33399820-33399839 Msa0114960:intron 40.0%
! TCTGGTTTAGTTTACCCGAT+TGG + chr1_3:33399877-33399896 Msa0114960:intron 40.0%
AATTCGCACACTCTCATGTA+AGG + chr1_3:33399935-33399954 Msa0114960:intron 40.0%
TATACGCCAAATCCTCAATG+AGG - chr1_3:33399978-33399997 None:intergenic 40.0%
ACTTACACCTGTTGTGACTT+GGG - chr1_3:33400031-33400050 None:intergenic 40.0%
!! CTGGTTCTAACTCCTAATAC+TGG + chr1_3:33400087-33400106 Msa0114960:intron 40.0%
! CTAACTTGTGTGAGGTTTGT+AGG - chr1_3:33400217-33400236 None:intergenic 40.0%
!!! CTTTGGTAGTGTTTGCCTTT+TGG + chr1_3:33400268-33400287 Msa0114960:intron 40.0%
GAGATGTTCTTCCTACCAAA+AGG - chr1_3:33400286-33400305 None:intergenic 40.0%
CATCTCTACAAGCTCGTAAT+AGG + chr1_3:33400300-33400319 Msa0114960:intron 40.0%
! AAGGGAATTGGTCTGAAGTT+TGG - chr1_3:33400358-33400377 None:intergenic 40.0%
CCGTAGAACTGATACCAATA+TGG + chr1_3:33400399-33400418 Msa0114960:intron 40.0%
AGAACTGATACCAATATGGG+AGG + chr1_3:33400403-33400422 Msa0114960:intron 40.0%
TTAATCAACACAGCCGATAC+AGG - chr1_3:33400569-33400588 None:intergenic 40.0%
CCAGTGTATAGAATAAGCTG+CGG + chr1_3:33400601-33400620 Msa0114960:intron 40.0%
!! TGAGCGCTGATTGAAAAATG+AGG - chr1_3:33400651-33400670 None:intergenic 40.0%
GTCAGAATCTGGGTTATTTG+TGG - chr1_3:33400756-33400775 None:intergenic 40.0%
GAGATCTATAGGTCAGAATC+TGG - chr1_3:33400767-33400786 None:intergenic 40.0%
! TTTCATTCGAGAAGGTGCAT+TGG + chr1_3:33400824-33400843 Msa0114960:intron 40.0%
TCAATTCAACCACCACCAAA+TGG + chr1_3:33400923-33400942 Msa0114960:intron 40.0%
GCATTCATAGAAATAAGGGC+TGG + chr1_3:33401462-33401481 Msa0114960:intron 40.0%
AGACACAACGCATATGATCA+GGG - chr1_3:33401490-33401509 None:intergenic 40.0%
ATGTGCACTAATCCATACTG+CGG - chr1_3:33401517-33401536 None:intergenic 40.0%
! GGATTAGTGCACATATCAAC+TGG + chr1_3:33401523-33401542 Msa0114960:CDS 40.0%
GCAAAAGAGTTCATGAATGC+TGG + chr1_3:33401595-33401614 Msa0114960:CDS 40.0%
ACAGCTGTCACAATTTCATC+AGG - chr1_3:33401631-33401650 None:intergenic 40.0%
TTTCTCTAGACTCTCAGCTT+GGG - chr1_3:33401834-33401853 None:intergenic 40.0%
! TTTTCTCTAGACTCTCAGCT+TGG - chr1_3:33401835-33401854 None:intergenic 40.0%
AGAAGGTTAGATCCAGTAAC+TGG + chr1_3:33402579-33402598 Msa0114960:CDS 40.0%
TGATAGATCTTGCCAGTTAC+TGG - chr1_3:33402594-33402613 None:intergenic 40.0%
!!! GAAATTTTTTCCGCCAGAGA+CGG + chr1_3:33402617-33402636 Msa0114960:CDS 40.0%
AGACGGAAGAAATCAAAGCA+AGG + chr1_3:33402634-33402653 Msa0114960:CDS 40.0%
!! ACTTTTTCTTCCGTGTCATC+AGG - chr1_3:33402672-33402691 None:intergenic 40.0%
GCATTAAGGGTCTAAAGGAA+TGG + chr1_3:33402985-33403004 Msa0114960:intron 40.0%
AGGTTCATGTCATGACATTG+CGG - chr1_3:33403052-33403071 None:intergenic 40.0%
CCCTACAAATATATCATGGC+TGG - chr1_3:33403519-33403538 None:intergenic 40.0%
! TGGTCTTAATTGACATGGTG+GGG + chr1_3:33403738-33403757 Msa0114960:intron 40.0%
CCGATTCCTGGTATGAAAAA+AGG + chr1_3:33403834-33403853 Msa0114960:CDS 40.0%
! ACAAAGTACTACCATCTACC+TGG - chr1_3:33403875-33403894 None:intergenic 40.0%
!! GCTTTTCTAGCACATAAAGG+AGG - chr1_3:33403932-33403951 None:intergenic 40.0%
TTCCTCATTTCTCGAGAATG+GGG - chr1_3:33404037-33404056 None:intergenic 40.0%
CACCCAAATAACAGGAAGAA+TGG - chr1_3:33404182-33404201 None:intergenic 40.0%
! TCTAGAGTCACCCAAATAAC+AGG - chr1_3:33404190-33404209 None:intergenic 40.0%
GATGTCAGTGTTCTATAGGT+TGG - chr1_3:33404241-33404260 None:intergenic 40.0%
GTCTGATGTCAGTGTTCTAT+AGG - chr1_3:33404245-33404264 None:intergenic 40.0%
CTAACACGGAATCGACAATA+TGG - chr1_3:33404323-33404342 None:intergenic 40.0%
CACTTCACATCGAAACTTGT+CGG - chr1_3:33404355-33404374 None:intergenic 40.0%
CAAGTTTCGATGTGAAGTGT+CGG + chr1_3:33404356-33404375 Msa0114960:intron 40.0%
ACTCTTCTTACGAAAGGAGT+AGG - chr1_3:33404395-33404414 None:intergenic 40.0%
GAGGTGAATGAAGTTTAGGA+TGG + chr1_3:33404521-33404540 Msa0114960:intron 40.0%
! TGAAGTTTAGGATGGTCAGA+TGG + chr1_3:33404529-33404548 Msa0114960:intron 40.0%
!!! TCTTGTTTTTAATGCCCCTG+AGG + chr1_3:33404583-33404602 Msa0114960:intron 40.0%
TCCTGAACTGAATCCAGAAA+TGG + chr1_3:33404666-33404685 Msa0114960:CDS 40.0%
! ACCATTTCTGGATTCAGTTC+AGG - chr1_3:33404670-33404689 None:intergenic 40.0%
GCACTTTCATTTGCCAATGA+TGG + chr1_3:33404804-33404823 Msa0114960:CDS 40.0%
TGAAATCAACTTTGTCCTGC+AGG + chr1_3:33404941-33404960 Msa0114960:intron 40.0%
!! TTCATGGATTGGGGTGATTA+TGG + chr1_3:33405044-33405063 Msa0114960:CDS 40.0%
ATTTCTAATCTCAGGTGCAG+CGG + chr1_3:33405655-33405674 Msa0114960:intron 40.0%
! CAATTCCCTACAGCATTTTG+AGG - chr1_3:33405719-33405738 None:intergenic 40.0%
ATTGATGTAAGGGGATAGAG+TGG + chr1_3:33405743-33405762 Msa0114960:intron 40.0%
! TAGGATAACTGGTCTGTGTT+CGG - chr1_3:33405935-33405954 None:intergenic 40.0%
AACTGATGAACTCATAACCG+AGG + chr1_3:33406083-33406102 Msa0114960:intron 40.0%
CCAGTGTACATTCGATAAAC+TGG - chr1_3:33406172-33406191 None:intergenic 40.0%
CCAGTTTATCGAATGTACAC+TGG + chr1_3:33406169-33406188 Msa0114960:intron 40.0%
! TTTGTTTGCATGGTTTTCCC+AGG + chr1_3:33406222-33406241 Msa0114960:intron 40.0%
! TTGTTTGCATGGTTTTCCCA+GGG + chr1_3:33406223-33406242 Msa0114960:intron 40.0%
TGCATAATACCACTAGAAGC+AGG - chr1_3:33406354-33406373 None:intergenic 40.0%
TTTCGGCTTCTCTATTATGC+AGG + chr1_3:33406514-33406533 Msa0114960:intron 40.0%
!! ATTTCAACGTGTTTTCAGGC+GGG + chr1_3:33406667-33406686 Msa0114960:intron 40.0%
! CTCTTTTGTACAGCTCGTAA+CGG - chr1_3:33406780-33406799 None:intergenic 40.0%
! TTTTGTCCACCTTTCCTGAA+AGG + chr1_3:33406833-33406852 Msa0114960:CDS 40.0%
! ATTCCTTTGAAGGAAAACCG+AGG + chr1_3:33406878-33406897 Msa0114960:CDS 40.0%
! TGTTTCTAACCAAAACCCTG+AGG - chr1_3:33407078-33407097 None:intergenic 40.0%
! GTACCTATTTTCTTGTGCAG+GGG + chr1_3:33407173-33407192 Msa0114960:intron 40.0%
TTGAGAATTTCAGAAGAGGG+TGG + chr1_3:33407371-33407390 Msa0114960:three_prime_UTR 40.0%
GGAGTGTGTTAGAACTTAGA+AGG - chr1_3:33407588-33407607 None:intergenic 40.0%
ATGAGCCACATTGCTCTCAA+TGG - chr1_3:33399222-33399241 None:intergenic 45.0%
GTGTGCAACATTGTTGCTAC+GGG - chr1_3:33399248-33399267 None:intergenic 45.0%
GGTGTGCAACATTGTTGCTA+CGG - chr1_3:33399249-33399268 None:intergenic 45.0%
AAGAGTTCTTGAGGGGATGT+AGG - chr1_3:33399285-33399304 None:intergenic 45.0%
GAGGAAGAAGAGTTCTTGAG+GGG - chr1_3:33399292-33399311 None:intergenic 45.0%
ATTGGCATGTCTGCTGAAGT+TGG - chr1_3:33399408-33399427 None:intergenic 45.0%
TTATAAGTGAGGGCAGACCT+CGG - chr1_3:33399706-33399725 None:intergenic 45.0%
CACATAGTGTGGGAGAGAAA+AGG + chr1_3:33399830-33399849 Msa0114960:intron 45.0%
AATGGTTGAGCTCTGCCAAT+CGG - chr1_3:33399895-33399914 None:intergenic 45.0%
CACACTCTCATGTAAGGTCA+GGG + chr1_3:33399941-33399960 Msa0114960:intron 45.0%
CAAATCCTCAATGAGGTTGG+TGG - chr1_3:33399971-33399990 None:intergenic 45.0%
CACCAACCTCATTGAGGATT+TGG + chr1_3:33399969-33399988 Msa0114960:intron 45.0%
ACTAGAACCCAAGTCACAAC+AGG + chr1_3:33400021-33400040 Msa0114960:intron 45.0%
CACTTACACCTGTTGTGACT+TGG - chr1_3:33400032-33400051 None:intergenic 45.0%
CAAGTCACAACAGGTGTAAG+TGG + chr1_3:33400030-33400049 Msa0114960:intron 45.0%
TCACAACAGGTGTAAGTGGA+AGG + chr1_3:33400034-33400053 Msa0114960:intron 45.0%
!! TATAGTGTTGGCAGGCAATG+AGG - chr1_3:33400143-33400162 None:intergenic 45.0%
ACTGGTAAGAAACAGATGCG+AGG + chr1_3:33400171-33400190 Msa0114960:intron 45.0%
! GCAATGCTCTAACTTGTGTG+AGG - chr1_3:33400225-33400244 None:intergenic 45.0%
! GGTAGTGTTTGCCTTTTGGT+AGG + chr1_3:33400272-33400291 Msa0114960:intron 45.0%
ACCAATATGGGAGGCTGTTT+AGG + chr1_3:33400412-33400431 Msa0114960:intron 45.0%
CTATGGAAGGCTACTAGACA+AGG - chr1_3:33400449-33400468 None:intergenic 45.0%
ACTACTAGACAAGGCGACTA+TGG - chr1_3:33400466-33400485 None:intergenic 45.0%
CTGCATGTTCCAACCTGTAT+CGG + chr1_3:33400553-33400572 Msa0114960:intron 45.0%
CCGCAGCTTATTCTATACAC+TGG - chr1_3:33400604-33400623 None:intergenic 45.0%
GACCTGTACATCACCTTGAA+CGG + chr1_3:33401075-33401094 Msa0114960:intron 45.0%
! CCTGCATTTTTCTCCGTTCA+AGG - chr1_3:33401091-33401110 None:intergenic 45.0%
CCTTGAACGGAGAAAAATGC+AGG + chr1_3:33401088-33401107 Msa0114960:intron 45.0%
CAGACACAACGCATATGATC+AGG - chr1_3:33401491-33401510 None:intergenic 45.0%
TTGTGTCTGTTTCCGCAGTA+TGG + chr1_3:33401502-33401521 Msa0114960:intron 45.0%
GTAGCAGCTGGAACAGAAAT+AGG + chr1_3:33401565-33401584 Msa0114960:CDS 45.0%
CAAAAAGGGTGGCTTCTTGA+CGG + chr1_3:33401791-33401810 Msa0114960:CDS 45.0%
CAGCTTGGGATAAACTACGA+GGG - chr1_3:33401820-33401839 None:intergenic 45.0%
TCAGCTTGGGATAAACTACG+AGG - chr1_3:33401821-33401840 None:intergenic 45.0%
! ATTCTCCCTGGTGCCAATTT+GGG - chr1_3:33402243-33402262 None:intergenic 45.0%
ATCTCTTAACCCACTTGGGT+TGG - chr1_3:33402323-33402342 None:intergenic 45.0%
! ATTCTGATCGACAGAAGCGT+TGG + chr1_3:33402555-33402574 Msa0114960:CDS 45.0%
TTGATTTCTTCCGTCTCTGG+CGG - chr1_3:33402630-33402649 None:intergenic 45.0%
! GCTTTGATTTCTTCCGTCTC+TGG - chr1_3:33402633-33402652 None:intergenic 45.0%
AGTAACTCGTCCTGATGACA+CGG + chr1_3:33402659-33402678 Msa0114960:CDS 45.0%
GGTTCATGTCATGACATTGC+GGG - chr1_3:33403051-33403070 None:intergenic 45.0%
TAACAGTGGCAATGTCCCAT+CGG - chr1_3:33403346-33403365 None:intergenic 45.0%
!!! GCTTGCCCTTTTTTCATACC+AGG - chr1_3:33403843-33403862 None:intergenic 45.0%
GCATCTTTGATCCAGGTAGA+TGG + chr1_3:33403861-33403880 Msa0114960:intron 45.0%
TTCCCCATTCTCGAGAAATG+AGG + chr1_3:33404032-33404051 Msa0114960:CDS 45.0%
! ATGTGCTACTAGCTACACAG+AGG + chr1_3:33404071-33404090 Msa0114960:CDS 45.0%
! TGTGCTACTAGCTACACAGA+GGG + chr1_3:33404072-33404091 Msa0114960:CDS 45.0%
ACATCGAAACTTGTCGGTGT+CGG - chr1_3:33404349-33404368 None:intergenic 45.0%
TATCATCAGAGTAGGCCTCA+GGG - chr1_3:33404601-33404620 None:intergenic 45.0%
ATATCATCAGAGTAGGCCTC+AGG - chr1_3:33404602-33404621 None:intergenic 45.0%
GTTTGTGTACAGGGGTCAAT+GGG + chr1_3:33404963-33404982 Msa0114960:CDS 45.0%
TGGGGTGATTATGGTGCAAA+AGG + chr1_3:33405053-33405072 Msa0114960:CDS 45.0%
CTGCAACAGCAGAACCATAA+AGG - chr1_3:33405124-33405143 None:intergenic 45.0%
TTGAAGCAGCTACGTAGAAG+TGG - chr1_3:33405269-33405288 None:intergenic 45.0%
TGGCTCCTCAAAATGCTGTA+GGG + chr1_3:33405711-33405730 Msa0114960:CDS 45.0%
CACTAGAAGCAGGTAAATCC+TGG - chr1_3:33406344-33406363 None:intergenic 45.0%
CAGGATTTACCTGCTTCTAG+TGG + chr1_3:33406342-33406361 Msa0114960:intron 45.0%
AGGAACCCAGTATCCCATAA+TGG + chr1_3:33406534-33406553 Msa0114960:intron 45.0%
GGAACCCAGTATCCCATAAT+GGG + chr1_3:33406535-33406554 Msa0114960:intron 45.0%
AGCTCCCATTATGGGATACT+GGG - chr1_3:33406542-33406561 None:intergenic 45.0%
TACCTGAGAGCTCCCATTAT+GGG - chr1_3:33406550-33406569 None:intergenic 45.0%
TTACCTGAGAGCTCCCATTA+TGG - chr1_3:33406551-33406570 None:intergenic 45.0%
TTGTACAGCTCGTAACGGTA+TGG - chr1_3:33406775-33406794 None:intergenic 45.0%
CAAAAGAGTAGAAGAGTCGC+CGG + chr1_3:33406792-33406811 Msa0114960:CDS 45.0%
AAAAGAGTAGAAGAGTCGCC+GGG + chr1_3:33406793-33406812 Msa0114960:CDS 45.0%
! GTACCTCGGTTTTCCTTCAA+AGG - chr1_3:33406884-33406903 None:intergenic 45.0%
AATGGAACCAAGAAAGCCTC+AGG + chr1_3:33407059-33407078 Msa0114960:CDS 45.0%
ATGGAACCAAGAAAGCCTCA+GGG + chr1_3:33407060-33407079 Msa0114960:CDS 45.0%
TCGGAGTTTGTAGTGCAACT+TGG + chr1_3:33407301-33407320 Msa0114960:three_prime_UTR 45.0%
CGGAGTTTGTAGTGCAACTT+GGG + chr1_3:33407302-33407321 Msa0114960:three_prime_UTR 45.0%
GGAGTTTGTAGTGCAACTTG+GGG + chr1_3:33407303-33407322 Msa0114960:three_prime_UTR 45.0%
!!! TTTTTTTTTTTTATTCTTTT+TGG + chr1_3:33399512-33399531 Msa0114960:intron 5.0%
!! TATATATATATATATATGTT+AGG - chr1_3:33407516-33407535 None:intergenic 5.0%
AGTTCTTGAGGGGATGTAGG+AGG - chr1_3:33399282-33399301 None:intergenic 50.0%
ATATCAGGTGCACCTGCATC+TGG + chr1_3:33399590-33399609 Msa0114960:CDS 50.0%
ATACTCGGTACAATGAGCCG+AGG + chr1_3:33399686-33399705 Msa0114960:intron 50.0%
ATGGTTGAGCTCTGCCAATC+GGG - chr1_3:33399894-33399913 None:intergenic 50.0%
GCACACTCTCATGTAAGGTC+AGG + chr1_3:33399940-33399959 Msa0114960:intron 50.0%
GAGAACCACCAACCTCATTG+AGG + chr1_3:33399963-33399982 Msa0114960:intron 50.0%
CGCCAAATCCTCAATGAGGT+TGG - chr1_3:33399974-33399993 None:intergenic 50.0%
GCCTAAACAGCCTCCCATAT+TGG - chr1_3:33400416-33400435 None:intergenic 50.0%
CTAGACAAGGCGACTATGGA+AGG - chr1_3:33400462-33400481 None:intergenic 50.0%
TCAACACAGCCGATACAGGT+TGG - chr1_3:33400565-33400584 None:intergenic 50.0%
AGAATAAGCTGCGGCCATGA+AGG + chr1_3:33400610-33400629 Msa0114960:intron 50.0%
! GAGACTAGTCCCTACCTTCA+TGG - chr1_3:33400627-33400646 None:intergenic 50.0%
CTCCGTTCAAGGTGATGTAC+AGG - chr1_3:33401080-33401099 None:intergenic 50.0%
CTAAGAGCAGAAGTAGCAGC+TGG + chr1_3:33401553-33401572 Msa0114960:CDS 50.0%
GTTCATGAATGCTGGTCGCT+TGG + chr1_3:33401603-33401622 Msa0114960:CDS 50.0%
! GATTCTCCCTGGTGCCAATT+TGG - chr1_3:33402244-33402263 None:intergenic 50.0%
GAATCGAACCTGAGACCTTG+AGG + chr1_3:33402259-33402278 Msa0114960:intron 50.0%
!! TGGCCTGGTGGTATTGACTT+GGG - chr1_3:33402303-33402322 None:intergenic 50.0%
!! TTGGCCTGGTGGTATTGACT+TGG - chr1_3:33402304-33402323 None:intergenic 50.0%
!! TCGACAGAAGCGTTGGTAGA+AGG + chr1_3:33402562-33402581 Msa0114960:CDS 50.0%
AGGGCAAGCATCTTTGATCC+AGG + chr1_3:33403854-33403873 Msa0114960:CDS 50.0%
ACACAGAGGGCCATCAATGA+TGG + chr1_3:33404085-33404104 Msa0114960:CDS 50.0%
ATCATCAGAGTAGGCCTCAG+GGG - chr1_3:33404600-33404619 None:intergenic 50.0%
TGTCCTGCAGGTTTGTGTAC+AGG + chr1_3:33404953-33404972 Msa0114960:intron 50.0%
GTCCTGCAGGTTTGTGTACA+GGG + chr1_3:33404954-33404973 Msa0114960:intron 50.0%
TCCTGCAGGTTTGTGTACAG+GGG + chr1_3:33404955-33404974 Msa0114960:intron 50.0%
GGTTTGTGTACAGGGGTCAA+TGG + chr1_3:33404962-33404981 Msa0114960:intron 50.0%
GGAATGCCATTACAGCTTGC+TGG + chr1_3:33405002-33405021 Msa0114960:CDS 50.0%
CGACTTCCAGCAAGCTGTAA+TGG - chr1_3:33405011-33405030 None:intergenic 50.0%
GTGGCTCCTCAAAATGCTGT+AGG + chr1_3:33405710-33405729 Msa0114960:CDS 50.0%
AGCAGGCATCATGATCTGCA+TGG + chr1_3:33406110-33406129 Msa0114960:intron 50.0%
GAGCTCCCATTATGGGATAC+TGG - chr1_3:33406543-33406562 None:intergenic 50.0%
! ATCCCATAATGGGAGCTCTC+AGG + chr1_3:33406545-33406564 Msa0114960:intron 50.0%
ATGGGAGCTCTCAGGTAAGA+TGG + chr1_3:33406553-33406572 Msa0114960:intron 50.0%
AGTTTCTCGCGCACCCTATT+CGG + chr1_3:33406627-33406646 Msa0114960:intron 50.0%
CAGCTCGTAACGGTATGGAT+AGG - chr1_3:33406770-33406789 None:intergenic 50.0%
CCAAAACCCTGAGGCTTTCT+TGG - chr1_3:33407069-33407088 None:intergenic 50.0%
! CCAAGAAAGCCTCAGGGTTT+TGG + chr1_3:33407066-33407085 Msa0114960:CDS 50.0%
GAGCCCCTGCACAAGAAAAT+AGG - chr1_3:33407179-33407198 None:intergenic 50.0%
GTTTGTAGTGCAACTTGGGG+TGG + chr1_3:33407306-33407325 Msa0114960:three_prime_UTR 50.0%
GATGTAGGAGGAAGAGGGTG+TGG - chr1_3:33399270-33399289 None:intergenic 55.0%
GAGGGGATGTAGGAGGAAGA+GGG - chr1_3:33399275-33399294 None:intergenic 55.0%
TGAGGGGATGTAGGAGGAAG+AGG - chr1_3:33399276-33399295 None:intergenic 55.0%
CTCCACAAGCGAGCCATTGA+AGG + chr1_3:33399562-33399581 Msa0114960:CDS 55.0%
CACCTTCAATGGCTCGCTTG+TGG - chr1_3:33399567-33399586 None:intergenic 55.0%
TGAGTTCCCTTGCCAGATGC+AGG - chr1_3:33399605-33399624 None:intergenic 55.0%
TGTGGGAGAGAAAAGGCCTC+TGG + chr1_3:33399837-33399856 Msa0114960:intron 55.0%
TTGGCAGGCAATGAGGCTTG+TGG - chr1_3:33400136-33400155 None:intergenic 55.0%
TAAGCTGCGGCCATGAAGGT+AGG + chr1_3:33400614-33400633 Msa0114960:intron 55.0%
AAGCTGCGGCCATGAAGGTA+GGG + chr1_3:33400615-33400634 Msa0114960:intron 55.0%
AACCCACCCAAATTGGCACC+AGG + chr1_3:33402234-33402253 Msa0114960:intron 55.0%
ACCCACCCAAATTGGCACCA+GGG + chr1_3:33402235-33402254 Msa0114960:intron 55.0%
! TCCCTGGTGCCAATTTGGGT+GGG - chr1_3:33402239-33402258 None:intergenic 55.0%
GTCTCAGGTTCGATTCTCCC+TGG - chr1_3:33402255-33402274 None:intergenic 55.0%
TCGAACCTGAGACCTTGAGG+AGG + chr1_3:33402262-33402281 Msa0114960:intron 55.0%
!! GTGGTATTGACTTGGGACCC+GGG - chr1_3:33402296-33402315 None:intergenic 55.0%
!! GGTGGTATTGACTTGGGACC+CGG - chr1_3:33402297-33402316 None:intergenic 55.0%
GGTCCCAAGTCAATACCACC+AGG + chr1_3:33402297-33402316 Msa0114960:intron 55.0%
!! TTAACCCACTTGGGTTGGCC+TGG - chr1_3:33402318-33402337 None:intergenic 55.0%
!! GTCGGTGTCGGACACTAACA+CGG - chr1_3:33404337-33404356 None:intergenic 55.0%
ACCCCTGTACACAAACCTGC+AGG - chr1_3:33404959-33404978 None:intergenic 55.0%
GTACAGGGGTCAATGGGAGA+AGG + chr1_3:33404969-33404988 Msa0114960:CDS 55.0%
!! ATGGGAGAAGGTGCTCTTGC+TGG + chr1_3:33404981-33405000 Msa0114960:CDS 55.0%
TCTAATCTCAGGTGCAGCGG+AGG + chr1_3:33405658-33405677 Msa0114960:intron 55.0%
CTCATAACCGAGGACTGAGC+AGG + chr1_3:33406093-33406112 Msa0114960:intron 55.0%
CATGATGCCTGCTCAGTCCT+CGG - chr1_3:33406103-33406122 None:intergenic 55.0%
GCGCGAGAAACTCATAGGGT+GGG - chr1_3:33406619-33406638 None:intergenic 55.0%
TGCGCGAGAAACTCATAGGG+TGG - chr1_3:33406620-33406639 None:intergenic 55.0%
GGGTGCGCGAGAAACTCATA+GGG - chr1_3:33406623-33406642 None:intergenic 55.0%
AGGGTGCGCGAGAAACTCAT+AGG - chr1_3:33406624-33406643 None:intergenic 55.0%
!! TCAACGTGTTTTCAGGCGGG+TGG + chr1_3:33406670-33406689 Msa0114960:intron 55.0%
GGTAGGCCTTTCAGGAAAGG+TGG - chr1_3:33406842-33406861 None:intergenic 55.0%
CACGGTAGGCCTTTCAGGAA+AGG - chr1_3:33406845-33406864 None:intergenic 55.0%
CTTTCCTGAAAGGCCTACCG+TGG + chr1_3:33406843-33406862 Msa0114960:CDS 55.0%
TCATCCACGGTAGGCCTTTC+AGG - chr1_3:33406850-33406869 None:intergenic 55.0%
AGGTGCACCTGCATCTGGCA+AGG + chr1_3:33399595-33399614 Msa0114960:CDS 60.0%
GGTGCACCTGCATCTGGCAA+GGG + chr1_3:33399596-33399615 Msa0114960:CDS 60.0%
! CTCCCTGGTGCCAATTTGGG+TGG - chr1_3:33402240-33402259 None:intergenic 60.0%
GTGCTCCTCCTCAAGGTCTC+AGG - chr1_3:33402270-33402289 None:intergenic 60.0%
! CTTGAGGAGGAGCACACTCC+CGG + chr1_3:33402275-33402294 Msa0114960:intron 60.0%
! TTGAGGAGGAGCACACTCCC+GGG + chr1_3:33402276-33402295 Msa0114960:intron 60.0%
TACCACCAGGCCAACCCAAG+TGG + chr1_3:33402310-33402329 Msa0114960:intron 60.0%
ACCACCAGGCCAACCCAAGT+GGG + chr1_3:33402311-33402330 Msa0114960:intron 60.0%
TGGTCTGTGTTCGGCAGCAG+TGG - chr1_3:33405926-33405945 None:intergenic 60.0%
TTGTGCAGGGGCTCGTTGAG+TGG + chr1_3:33407185-33407204 Msa0114960:intron 60.0%
! CGGGAGTGTGCTCCTCCTCA+AGG - chr1_3:33402277-33402296 None:intergenic 65.0%
!! ACCCACTTGGGTTGGCCTGG+TGG - chr1_3:33402315-33402334 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr1_3 gene 33399177 33407613 33399177 ID=Msa0114960;Name=Msa0114960
chr1_3 mRNA 33399177 33407613 33399177 ID=Msa0114960-mRNA-1;Parent=Msa0114960;Name=Msa0114960-mRNA-1;_AED=0.13;_eAED=0.13;_QI=80|0.94|0.95|1|0.94|0.9|20|365|579
chr1_3 exon 33399177 33399445 33399177 ID=Msa0114960-mRNA-1:exon:10477;Parent=Msa0114960-mRNA-1
chr1_3 exon 33399539 33399646 33399539 ID=Msa0114960-mRNA-1:exon:10478;Parent=Msa0114960-mRNA-1
chr1_3 exon 33401520 33401648 33401520 ID=Msa0114960-mRNA-1:exon:10479;Parent=Msa0114960-mRNA-1
chr1_3 exon 33401755 33401889 33401755 ID=Msa0114960-mRNA-1:exon:10480;Parent=Msa0114960-mRNA-1
chr1_3 exon 33402543 33402689 33402543 ID=Msa0114960-mRNA-1:exon:10481;Parent=Msa0114960-mRNA-1
chr1_3 exon 33403222 33403296 33403222 ID=Msa0114960-mRNA-1:exon:10482;Parent=Msa0114960-mRNA-1
chr1_3 exon 33403387 33403483 33403387 ID=Msa0114960-mRNA-1:exon:10483;Parent=Msa0114960-mRNA-1
chr1_3 exon 33403829 33403875 33403829 ID=Msa0114960-mRNA-1:exon:10484;Parent=Msa0114960-mRNA-1
chr1_3 exon 33403995 33404123 33403995 ID=Msa0114960-mRNA-1:exon:10485;Parent=Msa0114960-mRNA-1
chr1_3 exon 33404652 33404687 33404652 ID=Msa0114960-mRNA-1:exon:10486;Parent=Msa0114960-mRNA-1
chr1_3 exon 33404759 33404839 33404759 ID=Msa0114960-mRNA-1:exon:10487;Parent=Msa0114960-mRNA-1
chr1_3 exon 33404963 33405101 33404963 ID=Msa0114960-mRNA-1:exon:10488;Parent=Msa0114960-mRNA-1
chr1_3 exon 33405669 33405748 33405669 ID=Msa0114960-mRNA-1:exon:10489;Parent=Msa0114960-mRNA-1
chr1_3 exon 33405907 33405972 33405907 ID=Msa0114960-mRNA-1:exon:10490;Parent=Msa0114960-mRNA-1
chr1_3 exon 33406345 33406374 33406345 ID=Msa0114960-mRNA-1:exon:10491;Parent=Msa0114960-mRNA-1
chr1_3 exon 33406457 33406512 33406457 ID=Msa0114960-mRNA-1:exon:10492;Parent=Msa0114960-mRNA-1
chr1_3 exon 33406762 33406899 33406762 ID=Msa0114960-mRNA-1:exon:10493;Parent=Msa0114960-mRNA-1
chr1_3 exon 33407058 33407087 33407058 ID=Msa0114960-mRNA-1:exon:10494;Parent=Msa0114960-mRNA-1
chr1_3 exon 33407193 33407528 33407193 ID=Msa0114960-mRNA-1:exon:10495;Parent=Msa0114960-mRNA-1
chr1_3 exon 33407557 33407613 33407557 ID=Msa0114960-mRNA-1:exon:10496;Parent=Msa0114960-mRNA-1
chr1_3 five_prime_UTR 33399177 33399256 33399177 ID=Msa0114960-mRNA-1:five_prime_utr;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33399257 33399445 33399257 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33399539 33399646 33399539 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33401520 33401648 33401520 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33401755 33401889 33401755 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33402543 33402689 33402543 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33403222 33403296 33403222 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33403387 33403483 33403387 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33403829 33403875 33403829 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33403995 33404123 33403995 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33404652 33404687 33404652 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33404759 33404839 33404759 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33404963 33405101 33404963 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33405669 33405748 33405669 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33405907 33405972 33405907 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33406345 33406374 33406345 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33406457 33406512 33406457 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33406762 33406899 33406762 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33407058 33407087 33407058 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 CDS 33407193 33407220 33407193 ID=Msa0114960-mRNA-1:cds;Parent=Msa0114960-mRNA-1
chr1_3 three_prime_UTR 33407221 33407528 33407221 ID=Msa0114960-mRNA-1:three_prime_utr;Parent=Msa0114960-mRNA-1
chr1_3 three_prime_UTR 33407557 33407613 33407557 ID=Msa0114960-mRNA-1:three_prime_utr;Parent=Msa0114960-mRNA-1
Gene Sequence

>Msa0114960

ATGTTGCACACCACACCCTCTTCCTCCTACATCCCCTCAAGAACTCTTCTTCCTCATTCTCTTTTATTTTCTTCTTCTTCTTCTTCTTCTCATCAGCCATGTTTACTTCTCCAACACCACAACTTTAACACTCAATATCTTCACTTAACCAACTTCAGCAGACATGCCAATTTGCCATTAAGACCCAAGGCAACAAGAAAGGTGATAAATTGCTCCACAAGCGAGCCATTGAAGGTGATGATATCAGGTGCACCTGCATCTGGCAAGGGAACTCAATGTGAATTAATTGTTAATAAGTATGGATTAGTGCACATATCAACTGGGGACTTGCTAAGAGCAGAAGTAGCAGCTGGAACAGAAATAGGAAACAAAGCAAAAGAGTTCATGAATGCTGGTCGCTTGGTTCCTGATGAAATTGTGACAGCTATGGTGGCAGCACGATTGTCTTGCGAAGATGTTAAGCAAAAAGGGTGGCTTCTTGACGGTTACCCTCGTAGTTTATCCCAAGCTGAGAGTCTAGAGAAAATGCAGATACGACCTGATGTGTATATCGTATTAGATGTTCATGATGAAATTCTGATCGACAGAAGCGTTGGTAGAAGGTTAGATCCAGTAACTGGCAAGATCTATCATGAGAAATTTTTTCCGCCAGAGACGGAAGAAATCAAAGCAAGGCTAGTAACTCGTCCTGATGACACGGAAGAAAAAGTTATGTCACGCCTAAATATCTATAAGCAAAATGCAGAATCAGTATCTTCCTCTTACTCAAACATAACAAATAAGATTGATGGAAGCCGTCCAAAAGAAGAAGTTTTCAAAGATATTGAATCTTTATTATCTCAATTGCAACAAAATAGAGTGAAAATAGTGAAATCTGGAGAAAAACCGATTCCTGGTATGAAAAAAGGGCAAGCATCTTTGATCCAGGATAAATGGAGAGGAATACCTACTAGACTAAATAACATTCCCCATTCTCGAGAAATGAGGAAATATTTCTATGATGATGTGCTACTAGCTACACAGAGGGCCATCAATGATGGAAAAACTAGGTTAAAGGTTGACATCAACATTCCTGAACTGAATCCAGAAATGGATGTTTATCGAATTGGTACACTGTTGGAACTTATTCGATCTCTTGCACTTTCATTTGCCAATGATGGAAAACGTGTAAAGGTTTGTGTACAGGGGTCAATGGGAGAAGGTGCTCTTGCTGGAATGCCATTACAGCTTGCTGGAAGTCGAAAGATTTTAGAATTCATGGATTGGGGTGATTATGGTGCAAAAGGAACCTTCATCAACATTGGTTCCATAGGTGCAGCGGAGGTTGAAGAGCAAGATGACATGTATTTCTTGGTGGCTCCTCAAAATGCTGTAGGGAATTGTATTATTGATGATTTAAAGGCAATGACCACTGCTGCCGAACACAGACCAGTTATCCTAATCAATGCTAAGCTTAAGGATTTACCTGCTTCTAGTGGTATTATGCAAACAATGGGGCGAGACAAAAGACTCGAGTATTCAGCATCATTTGAAAGTTGCTACTTGATGTCCTATCCATACCGTTACGAGCTGTACAAAAGAGTAGAAGAGTCGCCGGGAAAAGAGAAGTATGTACTTTTGTCCACCTTTCCTGAAAGGCCTACCGTGGATGAAATTAATGATTCCTTTGAAGGAAAACCGAGAAATGGAACCAAGAAAGCCTCAGGGTTTTGGGGCTCGTTGAGTGGCATGTTTTTTTGA
Protein sequence

>Msa0114960

MLHTTPSSSYIPSRTLLPHSLLFSSSSSSSHQPCLLLQHHNFNTQYLHLTNFSRHANLPLRPKATRKVINCSTSEPLKVMISGAPASGKGTQCELIVNKYGLVHISTGDLLRAEVAAGTEIGNKAKEFMNAGRLVPDEIVTAMVAARLSCEDVKQKGWLLDGYPRSLSQAESLEKMQIRPDVYIVLDVHDEILIDRSVGRRLDPVTGKIYHEKFFPPETEEIKARLVTRPDDTEEKVMSRLNIYKQNAESVSSSYSNITNKIDGSRPKEEVFKDIESLLSQLQQNRVKIVKSGEKPIPGMKKGQASLIQDKWRGIPTRLNNIPHSREMRKYFYDDVLLATQRAINDGKTRLKVDINIPELNPEMDVYRIGTLLELIRSLALSFANDGKRVKVCVQGSMGEGALAGMPLQLAGSRKILEFMDWGDYGAKGTFINIGSIGAAEVEEQDDMYFLVAPQNAVGNCIIDDLKAMTTAAEHRPVILINAKLKDLPASSGIMQTMGRDKRLEYSASFESCYLMSYPYRYELYKRVEESPGKEKYVLLSTFPERPTVDEINDSFEGKPRNGTKKASGFWGSLSGMFF*