AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0558220


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558220 MtrunA17_Chr4g0047741 96.373 193 7 0 1 193 1 193 4.18e-132 368
Msa0558220 MtrunA17_Chr3g0086951 39.429 175 93 4 25 191 18 187 9.41e-20 82.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0558220 AT1G74730.1 64.062 192 67 2 3 193 8 198 7.35e-65 198
Msa0558220 AT5G08050.1 39.200 125 68 2 72 193 39 158 7.41e-14 66.6

Find 60 sgRNAs with CRISPR-Local

Find 150 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GGGGCTGTTGGGTTGTTTGC+TGG 0.240768 4_1:-56820225 Msa0558220:CDS
TGTTGTTCTCGGCGGGTTGC+AGG 0.251096 4_1:-56820199 Msa0558220:CDS
CTCTTGGTGTTGGGGCTGTT+GGG 0.261115 4_1:-56820236 Msa0558220:CDS
TGCGGTCTCTCCTTCCGTTT+TGG 0.280512 4_1:-56820361 Msa0558220:CDS
GCTCTTGGTGTTGGGGCTGT+TGG 0.285475 4_1:-56820237 Msa0558220:CDS
TTGCTGCTGCTCTTGGTGTT+GGG 0.287275 4_1:-56820245 Msa0558220:CDS
TCTGTCACTTCCGACGCTTT+TGG 0.320526 4_1:-56820334 Msa0558220:CDS
AAAGACGGTGAAAGGTTTAT+TGG 0.327341 4_1:+56820737 None:intergenic
GATAAGGAAAAGATAGATAA+AGG 0.353630 4_1:-56820999 Msa0558220:five_prime_UTR
GTTGCTGCTGCTCTTGGTGT+TGG 0.359407 4_1:-56820246 Msa0558220:CDS
TGAACAAGTACAACGATAAC+TGG 0.365581 4_1:-56820608 Msa0558220:CDS
GCTGTTGTTGCTGCTGCTCT+TGG 0.375504 4_1:-56820252 Msa0558220:CDS
TTTGCTGGATCTGTTGTTCT+CGG 0.382286 4_1:-56820210 Msa0558220:CDS
TTATCCAAAGCTGAAGAATT+CGG 0.394470 4_1:-56820468 Msa0558220:CDS
GACGCCGAATTCTTCAGCTT+TGG 0.394886 4_1:+56820464 None:intergenic
CTGGATCTGTTGTTCTCGGC+GGG 0.425288 4_1:-56820206 Msa0558220:CDS
TGCTGCTGCTCTTGGTGTTG+GGG 0.441410 4_1:-56820244 Msa0558220:CDS
CAACAAGATCGCACATGAAA+AGG 0.445504 4_1:-56820946 Msa0558220:five_prime_UTR
AAAGGTTTATTGGAGGAAGT+AGG 0.473704 4_1:+56820747 None:intergenic
TCATCTCATTATATAATACA+AGG 0.475880 4_1:-56820056 Msa0558220:three_prime_UTR
AAGGTTTATTGGAGGAAGTA+GGG 0.490170 4_1:+56820748 None:intergenic
AACTGGAAGAAACAATGGTT+CGG 0.517807 4_1:-56820591 Msa0558220:CDS
ACCTTTCACCGTCTTTGCCA+TGG 0.518610 4_1:-56820730 Msa0558220:CDS
TTATATAATGAGATGAAGAA+AGG 0.522716 4_1:+56820063 None:intergenic
TACCGCTCTTGTTGTAGTAC+AGG 0.524783 4_1:-56820274 Msa0558220:CDS
AAGAAACAATGGTTCGGAGC+AGG 0.525520 4_1:-56820585 Msa0558220:CDS
TGGAGAGCTGAAGTTGGAGC+AGG 0.527987 4_1:+56820822 None:intergenic
ACAAGAGCGGTAGTATCATC+AGG 0.531633 4_1:+56820285 None:intergenic
AGCGATAGTGACGGAGGGTG+CGG 0.535126 4_1:+56820775 None:intergenic
AAAAGATTACGAGATAGATA+AGG 0.544468 4_1:-56821015 None:intergenic
TTTGGGAGCCATGGCAAAGA+CGG 0.549608 4_1:+56820722 None:intergenic
GACGGTGAAAGGTTTATTGG+AGG 0.550094 4_1:+56820740 None:intergenic
TGAAGATGGAGAGCTGAAGT+TGG 0.551350 4_1:+56820816 None:intergenic
AAGTGACAGAGAAGCCAAAA+CGG 0.551577 4_1:+56820347 None:intergenic
GCCATGGCAAAGACGGTGAA+AGG 0.551635 4_1:+56820729 None:intergenic
AGGAAGCGAAGAAGTAGAAG+TGG 0.553396 4_1:-56820550 Msa0558220:CDS
CTCTCTTCAATCGAGAAACT+AGG 0.554038 4_1:-56820438 Msa0558220:CDS
GACAGAGAAGCCAAAACGGA+AGG 0.555736 4_1:+56820351 None:intergenic
TGTTCTCGGCGGGTTGCAGG+AGG 0.559794 4_1:-56820196 Msa0558220:CDS
GGAGGGTGCGGTGGTTAGTG+TGG 0.562291 4_1:+56820787 None:intergenic
TTTGGCTGCTGTTGCGACGG+TGG 0.563007 4_1:-56820316 Msa0558220:CDS
TAGTGTGGATGTGTTGAAGA+TGG 0.568146 4_1:+56820802 None:intergenic
CATCAATCAATCATCATCCA+TGG 0.577265 4_1:-56820850 Msa0558220:exon
GGTATGAGCAATACGACTGG+TGG 0.598192 4_1:-56820978 Msa0558220:five_prime_UTR
AGTTGGAGCAGGAACAGCCA+TGG 0.616976 4_1:+56820833 None:intergenic
GCTGGATCTGTTGTTCTCGG+CGG 0.618325 4_1:-56820207 Msa0558220:CDS
ACGATAACTGGAAGAAACAA+TGG 0.622411 4_1:-56820596 Msa0558220:CDS
GTATGAGCAATACGACTGGT+GGG 0.622950 4_1:-56820977 Msa0558220:five_prime_UTR
GATAGTGACGGAGGGTGCGG+TGG 0.630396 4_1:+56820778 None:intergenic
AAAGGTATGAGCAATACGAC+TGG 0.634129 4_1:-56820981 Msa0558220:five_prime_UTR
TAGGGAATGAGCGATAGTGA+CGG 0.635156 4_1:+56820766 None:intergenic
GCAACAGCAGCCAAAAGCGT+CGG 0.640980 4_1:+56820324 None:intergenic
GGAATGAGCGATAGTGACGG+AGG 0.658654 4_1:+56820769 None:intergenic
GAATGAGCGATAGTGACGGA+GGG 0.663461 4_1:+56820770 None:intergenic
CATCTCATTATATAATACAA+GGG 0.670501 4_1:-56820055 Msa0558220:three_prime_UTR
GGAGCAGGAATATTCTACGA+AGG 0.698664 4_1:-56820570 Msa0558220:CDS
AGCCTGTACTACAACAAGAG+CGG 0.708420 4_1:+56820272 None:intergenic
TGCAATCTCAACTGCCACGT+AGG 0.711060 4_1:+56820892 None:intergenic
ACTCTATTGATTGTCCTACG+TGG 0.730232 4_1:-56820906 Msa0558220:five_prime_UTR
CTTATTAGAGAAACTCGCTG+CGG 0.756406 4_1:-56820379 Msa0558220:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATTTGAATTTATGTTAA+TGG - chr4_1:56820374-56820393 Msa0558220:CDS 10.0%
!! TTTATTTGAATTTATGTTAA+TGG - chr4_1:56820374-56820393 Msa0558220:CDS 10.0%
!! AAATAATGATGAAAATGATG+AGG + chr4_1:56820341-56820360 None:intergenic 20.0%
!!! TGAATTTATGTTAATGGATA+TGG - chr4_1:56820380-56820399 Msa0558220:CDS 20.0%
!! TTATATAATGAGATGAAGAA+AGG + chr4_1:56820955-56820974 None:intergenic 20.0%
!! TCATCTCATTATATAATACA+AGG - chr4_1:56820959-56820978 Msa0558220:five_prime_UTR 20.0%
!! CATCTCATTATATAATACAA+GGG - chr4_1:56820960-56820979 Msa0558220:five_prime_UTR 20.0%
!! AAATAATGATGAAAATGATG+AGG + chr4_1:56820341-56820360 None:intergenic 20.0%
!!! TGAATTTATGTTAATGGATA+TGG - chr4_1:56820380-56820399 Msa0558220:CDS 20.0%
!! TTATATAATGAGATGAAGAA+AGG + chr4_1:56820955-56820974 None:intergenic 20.0%
!! TCATCTCATTATATAATACA+AGG - chr4_1:56820959-56820978 Msa0558220:five_prime_UTR 20.0%
!! CATCTCATTATATAATACAA+GGG - chr4_1:56820960-56820979 Msa0558220:five_prime_UTR 20.0%
! GATAAGGAAAAGATAGATAA+AGG - chr4_1:56820016-56820035 Msa0558220:three_prime_UTR 25.0%
!! TTTATGTTAATGGATATGGA+AGG - chr4_1:56820384-56820403 Msa0558220:CDS 25.0%
! GATAAGGAAAAGATAGATAA+AGG - chr4_1:56820016-56820035 Msa0558220:three_prime_UTR 25.0%
!! TTTATGTTAATGGATATGGA+AGG - chr4_1:56820384-56820403 Msa0558220:CDS 25.0%
! TGTGTATGTACCTTCTTTTT+GGG + chr4_1:56820313-56820332 None:intergenic 30.0%
! TTGTGTATGTACCTTCTTTT+TGG + chr4_1:56820314-56820333 None:intergenic 30.0%
TTATCCAAAGCTGAAGAATT+CGG - chr4_1:56820547-56820566 Msa0558220:CDS 30.0%
!!! GAAACTAGGACTTTTTTCTA+AGG - chr4_1:56820591-56820610 Msa0558220:CDS 30.0%
! TGTGTATGTACCTTCTTTTT+GGG + chr4_1:56820313-56820332 None:intergenic 30.0%
! TTGTGTATGTACCTTCTTTT+TGG + chr4_1:56820314-56820333 None:intergenic 30.0%
TTATCCAAAGCTGAAGAATT+CGG - chr4_1:56820547-56820566 Msa0558220:CDS 30.0%
!!! GAAACTAGGACTTTTTTCTA+AGG - chr4_1:56820591-56820610 Msa0558220:CDS 30.0%
CATCAATCAATCATCATCCA+TGG - chr4_1:56820165-56820184 Msa0558220:three_prime_UTR 35.0%
AAGGTTTATTGGAGGAAGTA+GGG + chr4_1:56820270-56820289 None:intergenic 35.0%
AAAGGTTTATTGGAGGAAGT+AGG + chr4_1:56820271-56820290 None:intergenic 35.0%
AAAGACGGTGAAAGGTTTAT+TGG + chr4_1:56820281-56820300 None:intergenic 35.0%
TGAACAAGTACAACGATAAC+TGG - chr4_1:56820407-56820426 Msa0558220:CDS 35.0%
ACGATAACTGGAAGAAACAA+TGG - chr4_1:56820419-56820438 Msa0558220:CDS 35.0%
AACTGGAAGAAACAATGGTT+CGG - chr4_1:56820424-56820443 Msa0558220:CDS 35.0%
TTAAGCAACGTTGAAAAAGC+AGG - chr4_1:56820520-56820539 Msa0558220:CDS 35.0%
!!! ACTAGGACTTTTTTCTAAGG+CGG - chr4_1:56820594-56820613 Msa0558220:CDS 35.0%
CATCAATCAATCATCATCCA+TGG - chr4_1:56820165-56820184 Msa0558220:three_prime_UTR 35.0%
AAGGTTTATTGGAGGAAGTA+GGG + chr4_1:56820270-56820289 None:intergenic 35.0%
AAAGGTTTATTGGAGGAAGT+AGG + chr4_1:56820271-56820290 None:intergenic 35.0%
AAAGACGGTGAAAGGTTTAT+TGG + chr4_1:56820281-56820300 None:intergenic 35.0%
TGAACAAGTACAACGATAAC+TGG - chr4_1:56820407-56820426 Msa0558220:CDS 35.0%
ACGATAACTGGAAGAAACAA+TGG - chr4_1:56820419-56820438 Msa0558220:CDS 35.0%
AACTGGAAGAAACAATGGTT+CGG - chr4_1:56820424-56820443 Msa0558220:CDS 35.0%
TTAAGCAACGTTGAAAAAGC+AGG - chr4_1:56820520-56820539 Msa0558220:CDS 35.0%
!!! ACTAGGACTTTTTTCTAAGG+CGG - chr4_1:56820594-56820613 Msa0558220:CDS 35.0%
! AAAGGTATGAGCAATACGAC+TGG - chr4_1:56820034-56820053 Msa0558220:three_prime_UTR 40.0%
CAACAAGATCGCACATGAAA+AGG - chr4_1:56820069-56820088 Msa0558220:three_prime_UTR 40.0%
! ACTCTATTGATTGTCCTACG+TGG - chr4_1:56820109-56820128 Msa0558220:three_prime_UTR 40.0%
TAGTGTGGATGTGTTGAAGA+TGG + chr4_1:56820216-56820235 None:intergenic 40.0%
CTCTCTTCAATCGAGAAACT+AGG - chr4_1:56820577-56820596 Msa0558220:CDS 40.0%
CTTATTAGAGAAACTCGCTG+CGG - chr4_1:56820636-56820655 Msa0558220:intron 40.0%
AAGTGACAGAGAAGCCAAAA+CGG + chr4_1:56820671-56820690 None:intergenic 40.0%
TTTGCTGGATCTGTTGTTCT+CGG - chr4_1:56820805-56820824 Msa0558220:CDS 40.0%
!! TACACATGTTTTTAACCGCG+CGG - chr4_1:56820855-56820874 Msa0558220:five_prime_UTR 40.0%
TTACAACAAAAACAACCGCG+CGG + chr4_1:56820873-56820892 None:intergenic 40.0%
! AAAGGTATGAGCAATACGAC+TGG - chr4_1:56820034-56820053 Msa0558220:three_prime_UTR 40.0%
CAACAAGATCGCACATGAAA+AGG - chr4_1:56820069-56820088 Msa0558220:three_prime_UTR 40.0%
! ACTCTATTGATTGTCCTACG+TGG - chr4_1:56820109-56820128 Msa0558220:three_prime_UTR 40.0%
TAGTGTGGATGTGTTGAAGA+TGG + chr4_1:56820216-56820235 None:intergenic 40.0%
CTCTCTTCAATCGAGAAACT+AGG - chr4_1:56820577-56820596 Msa0558220:CDS 40.0%
CTTATTAGAGAAACTCGCTG+CGG - chr4_1:56820636-56820655 Msa0558220:intron 40.0%
AAGTGACAGAGAAGCCAAAA+CGG + chr4_1:56820671-56820690 None:intergenic 40.0%
TTTGCTGGATCTGTTGTTCT+CGG - chr4_1:56820805-56820824 Msa0558220:CDS 40.0%
!! TACACATGTTTTTAACCGCG+CGG - chr4_1:56820855-56820874 Msa0558220:five_prime_UTR 40.0%
TTACAACAAAAACAACCGCG+CGG + chr4_1:56820873-56820892 None:intergenic 40.0%
GTATGAGCAATACGACTGGT+GGG - chr4_1:56820038-56820057 Msa0558220:three_prime_UTR 45.0%
TGAAGATGGAGAGCTGAAGT+TGG + chr4_1:56820202-56820221 None:intergenic 45.0%
TAGGGAATGAGCGATAGTGA+CGG + chr4_1:56820252-56820271 None:intergenic 45.0%
GACGGTGAAAGGTTTATTGG+AGG + chr4_1:56820278-56820297 None:intergenic 45.0%
!! TACCTTCTTTTTGGGAGCCA+TGG + chr4_1:56820305-56820324 None:intergenic 45.0%
! AAGAAACAATGGTTCGGAGC+AGG - chr4_1:56820430-56820449 Msa0558220:CDS 45.0%
GGAGCAGGAATATTCTACGA+AGG - chr4_1:56820445-56820464 Msa0558220:CDS 45.0%
AGGAAGCGAAGAAGTAGAAG+TGG - chr4_1:56820465-56820484 Msa0558220:CDS 45.0%
!!! GGACTTTTTTCTAAGGCGGA+AGG - chr4_1:56820598-56820617 Msa0558220:CDS 45.0%
!!! TTTTCTAAGGCGGAAGGACT+TGG - chr4_1:56820604-56820623 Msa0558220:CDS 45.0%
ACAAGAGCGGTAGTATCATC+AGG + chr4_1:56820733-56820752 None:intergenic 45.0%
! TACCGCTCTTGTTGTAGTAC+AGG - chr4_1:56820741-56820760 Msa0558220:CDS 45.0%
AGCCTGTACTACAACAAGAG+CGG + chr4_1:56820746-56820765 None:intergenic 45.0%
GTATGAGCAATACGACTGGT+GGG - chr4_1:56820038-56820057 Msa0558220:three_prime_UTR 45.0%
TGAAGATGGAGAGCTGAAGT+TGG + chr4_1:56820202-56820221 None:intergenic 45.0%
TAGGGAATGAGCGATAGTGA+CGG + chr4_1:56820252-56820271 None:intergenic 45.0%
GACGGTGAAAGGTTTATTGG+AGG + chr4_1:56820278-56820297 None:intergenic 45.0%
!! TACCTTCTTTTTGGGAGCCA+TGG + chr4_1:56820305-56820324 None:intergenic 45.0%
! AAGAAACAATGGTTCGGAGC+AGG - chr4_1:56820430-56820449 Msa0558220:CDS 45.0%
GGAGCAGGAATATTCTACGA+AGG - chr4_1:56820445-56820464 Msa0558220:CDS 45.0%
AGGAAGCGAAGAAGTAGAAG+TGG - chr4_1:56820465-56820484 Msa0558220:CDS 45.0%
!!! GGACTTTTTTCTAAGGCGGA+AGG - chr4_1:56820598-56820617 Msa0558220:CDS 45.0%
!!! TTTTCTAAGGCGGAAGGACT+TGG - chr4_1:56820604-56820623 Msa0558220:CDS 45.0%
ACAAGAGCGGTAGTATCATC+AGG + chr4_1:56820733-56820752 None:intergenic 45.0%
! TACCGCTCTTGTTGTAGTAC+AGG - chr4_1:56820741-56820760 Msa0558220:CDS 45.0%
AGCCTGTACTACAACAAGAG+CGG + chr4_1:56820746-56820765 None:intergenic 45.0%
GGTATGAGCAATACGACTGG+TGG - chr4_1:56820037-56820056 Msa0558220:three_prime_UTR 50.0%
TGCAATCTCAACTGCCACGT+AGG + chr4_1:56820126-56820145 None:intergenic 50.0%
! GAATGAGCGATAGTGACGGA+GGG + chr4_1:56820248-56820267 None:intergenic 50.0%
ACCTTTCACCGTCTTTGCCA+TGG - chr4_1:56820285-56820304 Msa0558220:CDS 50.0%
TTTGGGAGCCATGGCAAAGA+CGG + chr4_1:56820296-56820315 None:intergenic 50.0%
TGCCATGGCTCCCAAAAAGA+AGG - chr4_1:56820300-56820319 Msa0558220:CDS 50.0%
GACGCCGAATTCTTCAGCTT+TGG + chr4_1:56820554-56820573 None:intergenic 50.0%
GACAGAGAAGCCAAAACGGA+AGG + chr4_1:56820667-56820686 None:intergenic 50.0%
!! TCTGTCACTTCCGACGCTTT+TGG - chr4_1:56820681-56820700 Msa0558220:intron 50.0%
!! TTGCTGCTGCTCTTGGTGTT+GGG - chr4_1:56820770-56820789 Msa0558220:CDS 50.0%
GGTATGAGCAATACGACTGG+TGG - chr4_1:56820037-56820056 Msa0558220:three_prime_UTR 50.0%
TGCAATCTCAACTGCCACGT+AGG + chr4_1:56820126-56820145 None:intergenic 50.0%
! GAATGAGCGATAGTGACGGA+GGG + chr4_1:56820248-56820267 None:intergenic 50.0%
ACCTTTCACCGTCTTTGCCA+TGG - chr4_1:56820285-56820304 Msa0558220:CDS 50.0%
TTTGGGAGCCATGGCAAAGA+CGG + chr4_1:56820296-56820315 None:intergenic 50.0%
TGCCATGGCTCCCAAAAAGA+AGG - chr4_1:56820300-56820319 Msa0558220:CDS 50.0%
GACGCCGAATTCTTCAGCTT+TGG + chr4_1:56820554-56820573 None:intergenic 50.0%
GACAGAGAAGCCAAAACGGA+AGG + chr4_1:56820667-56820686 None:intergenic 50.0%
!! TCTGTCACTTCCGACGCTTT+TGG - chr4_1:56820681-56820700 Msa0558220:intron 50.0%
!! TTGCTGCTGCTCTTGGTGTT+GGG - chr4_1:56820770-56820789 Msa0558220:CDS 50.0%
AGTTGGAGCAGGAACAGCCA+TGG + chr4_1:56820185-56820204 None:intergenic 55.0%
TGGAGAGCTGAAGTTGGAGC+AGG + chr4_1:56820196-56820215 None:intergenic 55.0%
GGAATGAGCGATAGTGACGG+AGG + chr4_1:56820249-56820268 None:intergenic 55.0%
GCCATGGCAAAGACGGTGAA+AGG + chr4_1:56820289-56820308 None:intergenic 55.0%
! TGCGGTCTCTCCTTCCGTTT+TGG - chr4_1:56820654-56820673 Msa0558220:intron 55.0%
! GCAACAGCAGCCAAAAGCGT+CGG + chr4_1:56820694-56820713 None:intergenic 55.0%
!! GCTTTTGGCTGCTGTTGCGA+CGG - chr4_1:56820696-56820715 Msa0558220:intron 55.0%
GCTGTTGTTGCTGCTGCTCT+TGG - chr4_1:56820763-56820782 Msa0558220:CDS 55.0%
! GTTGCTGCTGCTCTTGGTGT+TGG - chr4_1:56820769-56820788 Msa0558220:CDS 55.0%
!! TGCTGCTGCTCTTGGTGTTG+GGG - chr4_1:56820771-56820790 Msa0558220:CDS 55.0%
!! CTCTTGGTGTTGGGGCTGTT+GGG - chr4_1:56820779-56820798 Msa0558220:CDS 55.0%
GCTGGATCTGTTGTTCTCGG+CGG - chr4_1:56820808-56820827 Msa0558220:CDS 55.0%
CTGGATCTGTTGTTCTCGGC+GGG - chr4_1:56820809-56820828 Msa0558220:CDS 55.0%
AGTTGGAGCAGGAACAGCCA+TGG + chr4_1:56820185-56820204 None:intergenic 55.0%
TGGAGAGCTGAAGTTGGAGC+AGG + chr4_1:56820196-56820215 None:intergenic 55.0%
GGAATGAGCGATAGTGACGG+AGG + chr4_1:56820249-56820268 None:intergenic 55.0%
GCCATGGCAAAGACGGTGAA+AGG + chr4_1:56820289-56820308 None:intergenic 55.0%
! TGCGGTCTCTCCTTCCGTTT+TGG - chr4_1:56820654-56820673 Msa0558220:intron 55.0%
! GCAACAGCAGCCAAAAGCGT+CGG + chr4_1:56820694-56820713 None:intergenic 55.0%
!! GCTTTTGGCTGCTGTTGCGA+CGG - chr4_1:56820696-56820715 Msa0558220:intron 55.0%
GCTGTTGTTGCTGCTGCTCT+TGG - chr4_1:56820763-56820782 Msa0558220:CDS 55.0%
! GTTGCTGCTGCTCTTGGTGT+TGG - chr4_1:56820769-56820788 Msa0558220:CDS 55.0%
!! TGCTGCTGCTCTTGGTGTTG+GGG - chr4_1:56820771-56820790 Msa0558220:CDS 55.0%
!! CTCTTGGTGTTGGGGCTGTT+GGG - chr4_1:56820779-56820798 Msa0558220:CDS 55.0%
GCTGGATCTGTTGTTCTCGG+CGG - chr4_1:56820808-56820827 Msa0558220:CDS 55.0%
CTGGATCTGTTGTTCTCGGC+GGG - chr4_1:56820809-56820828 Msa0558220:CDS 55.0%
! AGCGATAGTGACGGAGGGTG+CGG + chr4_1:56820243-56820262 None:intergenic 60.0%
TTTGGCTGCTGTTGCGACGG+TGG - chr4_1:56820699-56820718 Msa0558220:intron 60.0%
!! GCTCTTGGTGTTGGGGCTGT+TGG - chr4_1:56820778-56820797 Msa0558220:CDS 60.0%
! GGGGCTGTTGGGTTGTTTGC+TGG - chr4_1:56820790-56820809 Msa0558220:CDS 60.0%
!! TGTTGTTCTCGGCGGGTTGC+AGG - chr4_1:56820816-56820835 Msa0558220:CDS 60.0%
! AGCGATAGTGACGGAGGGTG+CGG + chr4_1:56820243-56820262 None:intergenic 60.0%
TTTGGCTGCTGTTGCGACGG+TGG - chr4_1:56820699-56820718 Msa0558220:intron 60.0%
!! GCTCTTGGTGTTGGGGCTGT+TGG - chr4_1:56820778-56820797 Msa0558220:CDS 60.0%
! GGGGCTGTTGGGTTGTTTGC+TGG - chr4_1:56820790-56820809 Msa0558220:CDS 60.0%
!! TGTTGTTCTCGGCGGGTTGC+AGG - chr4_1:56820816-56820835 Msa0558220:CDS 60.0%
! GGAGGGTGCGGTGGTTAGTG+TGG + chr4_1:56820231-56820250 None:intergenic 65.0%
! GATAGTGACGGAGGGTGCGG+TGG + chr4_1:56820240-56820259 None:intergenic 65.0%
!! TGTTCTCGGCGGGTTGCAGG+AGG - chr4_1:56820819-56820838 Msa0558220:CDS 65.0%
! GGAGGGTGCGGTGGTTAGTG+TGG + chr4_1:56820231-56820250 None:intergenic 65.0%
! GATAGTGACGGAGGGTGCGG+TGG + chr4_1:56820240-56820259 None:intergenic 65.0%
!! TGTTCTCGGCGGGTTGCAGG+AGG - chr4_1:56820819-56820838 Msa0558220:CDS 65.0%
Chromosome Type Strat End Strand Name
chr4_1 gene 56820015 56821022 56820015 ID=Msa0558220;Name=Msa0558220
chr4_1 mRNA 56820015 56821022 56820015 ID=Msa0558220-mRNA-1;Parent=Msa0558220;Name=Msa0558220-mRNA-1;_AED=0.04;_eAED=0.04;_QI=169|1|1|1|1|1|2|173|193
chr4_1 exon 56820015 56820631 56820015 ID=Msa0558220-mRNA-1:exon:17185;Parent=Msa0558220-mRNA-1
chr4_1 exon 56820716 56821022 56820716 ID=Msa0558220-mRNA-1:exon:17184;Parent=Msa0558220-mRNA-1
chr4_1 five_prime_UTR 56820854 56821022 56820854 ID=Msa0558220-mRNA-1:five_prime_utr;Parent=Msa0558220-mRNA-1
chr4_1 CDS 56820716 56820853 56820716 ID=Msa0558220-mRNA-1:cds;Parent=Msa0558220-mRNA-1
chr4_1 CDS 56820188 56820631 56820188 ID=Msa0558220-mRNA-1:cds;Parent=Msa0558220-mRNA-1
chr4_1 three_prime_UTR 56820015 56820187 56820015 ID=Msa0558220-mRNA-1:three_prime_utr;Parent=Msa0558220-mRNA-1
Gene Sequence

>Msa0558220

ATGGCTGTTCCTGCTCCAACTTCAGCTCTCCATCTTCAACACATCCACACTAACCACCGCACCCTCCGTCACTATCGCTCATTCCCTACTTCCTCCAATAAACCTTTCACCGTCTTTGCCATGGCTCCCAAAAAGAAGGTGAACAAGTACAACGATAACTGGAAGAAACAATGGTTCGGAGCAGGAATATTCTACGAAGGAAGCGAAGAAGTAGAAGTGGACGTATTCAAGAAACTCGAGAAACGCAAAGTTTTAAGCAACGTTGAAAAAGCAGGATTATTATCCAAAGCTGAAGAATTCGGCGTCACGCTCTCTTCAATCGAGAAACTAGGACTTTTTTCTAAGGCGGAAGGACTTGGCTTACTCAGCTTATTAGAGAAACTCGCTGCGGTCTCTCCTTCCGTTTTGGCTTCTCTGTCACTTCCGACGCTTTTGGCTGCTGTTGCGACGGTGGTTCTTGTTCCTGATGATACTACCGCTCTTGTTGTAGTACAGGCTGTTGTTGCTGCTGCTCTTGGTGTTGGGGCTGTTGGGTTGTTTGCTGGATCTGTTGTTCTCGGCGGGTTGCAGGAGGCTGATTGA

Protein sequence

>Msa0558220

MAVPAPTSALHLQHIHTNHRTLRHYRSFPTSSNKPFTVFAMAPKKKVNKYNDNWKKQWFGAGIFYEGSEEVEVDVFKKLEKRKVLSNVEKAGLLSKAEEFGVTLSSIEKLGLFSKAEGLGLLSLLEKLAAVSPSVLASLSLPTLLAAVATVVLVPDDTTALVVVQAVVAAALGVGAVGLFAGSVVLGGLQEAD*