Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031710 | Msa0935540 | 0.808087 | 3.678752e-50 | -8.615850e-47 |
| Msa0050380 | Msa0935540 | 0.814429 | 1.547539e-51 | -8.615850e-47 |
| Msa0698930 | Msa0935540 | 0.804310 | 2.296650e-49 | -8.615850e-47 |
| Msa0171760 | Msa0935540 | 0.821820 | 3.295234e-53 | -8.615850e-47 |
| Msa0188460 | Msa0935540 | 0.804091 | 2.551545e-49 | -8.615850e-47 |
| Msa0198910 | Msa0935540 | 0.800478 | 1.414303e-48 | -8.615850e-47 |
| Msa0426900 | Msa0935540 | 0.805786 | 1.128086e-49 | -8.615850e-47 |
| Msa0251640 | Msa0935540 | 0.814701 | 1.347292e-51 | -8.615850e-47 |
| Msa0490140 | Msa0935540 | 0.804068 | 2.579596e-49 | -8.615850e-47 |
| Msa0585230 | Msa0935540 | 0.804175 | 2.450556e-49 | -8.615850e-47 |
| Msa0935540 | Msa0969520 | 0.819060 | 1.416370e-52 | -8.615850e-47 |
| Msa0935540 | Msa1031910 | 0.803693 | 3.087005e-49 | -8.615850e-47 |
| Msa0935540 | Msa1075080 | -0.801180 | 1.016835e-48 | -8.615850e-47 |
| Msa0935540 | Msa1098250 | 0.811440 | 6.993398e-51 | -8.615850e-47 |
| Msa0935540 | Msa1174040 | 0.810222 | 1.283442e-50 | -8.615850e-47 |
| Msa0935540 | Msa1249280 | 0.977186 | 2.798933e-143 | -8.615850e-47 |
| Msa0935540 | Msa1278110 | 0.813187 | 2.906025e-51 | -8.615850e-47 |
| Msa0935540 | Msa1284710 | 0.801458 | 8.918750e-49 | -8.615850e-47 |
| Msa0935540 | Msa1359040 | 0.800139 | 1.658013e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 191 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTGCTTGTTCAGGTTTC+TGG | 0.041960 | 6_3:+6127547 | Msa0935540:intron |
| GTGCTTCCACTCTAGTGTTT+TGG | 0.305981 | 6_3:+6127591 | Msa0935540:three_prime_UTR |
| TCCAAAACGTGCTAAAACTA+AGG | 0.380850 | 6_3:+6127086 | Msa0935540:CDS |
| TTCAGTTCTGTTTGCAACAT+TGG | 0.395085 | 6_3:-6127049 | None:intergenic |
| GTCTGACAGTTGTTCAAGTC+TGG | 0.403785 | 6_3:+6127569 | Msa0935540:three_prime_UTR |
| TTTCTAGTACCTCTGGCTGC+TGG | 0.420914 | 6_3:+6127644 | Msa0935540:three_prime_UTR |
| CAATCTGTTTCTAGTACCTC+TGG | 0.430598 | 6_3:+6127637 | Msa0935540:three_prime_UTR |
| TTAGGCATTGTGGGTCGAAA+TGG | 0.461615 | 6_3:+6127392 | Msa0935540:intron |
| ACTAAGGGGCGTGGTGGTGC+AGG | 0.465724 | 6_3:+6127102 | Msa0935540:CDS |
| TGTGGTAAATGTGGAATTGT+TGG | 0.474301 | 6_3:+6127162 | Msa0935540:CDS |
| AGGTACTAGAAACAGATTGC+AGG | 0.474598 | 6_3:-6127633 | None:intergenic |
| GAAATGGTGATGAGTGATAC+TGG | 0.513326 | 6_3:+6127408 | Msa0935540:three_prime_UTR |
| CACATTTACCACAATGTCCA+CGG | 0.523480 | 6_3:-6127152 | None:intergenic |
| CCAAAACGTGCTAAAACTAA+GGG | 0.532094 | 6_3:+6127087 | Msa0935540:CDS |
| AAGAGGCGCCGTGGACATTG+TGG | 0.583174 | 6_3:+6127144 | Msa0935540:CDS |
| GAAGCATGGCATACAATCTG+AGG | 0.592856 | 6_3:+6127020 | Msa0935540:intron |
| TGATGAGTGATACTGGTGTC+CGG | 0.598194 | 6_3:+6127415 | Msa0935540:three_prime_UTR |
| TAGCAGTGAAAATACCTCAC+AGG | 0.603589 | 6_3:+6124935 | Msa0935540:five_prime_UTR |
| CGTGCTAAAACTAAGGGGCG+TGG | 0.611324 | 6_3:+6127093 | Msa0935540:CDS |
| TAACGCGTAAAACAGTCGTC+CGG | 0.615641 | 6_3:-6127434 | None:intergenic |
| CGTGGACATTGTGGTAAATG+TGG | 0.643084 | 6_3:+6127153 | Msa0935540:CDS |
| CCAACGCCAAAACACTAGAG+TGG | 0.643604 | 6_3:-6127597 | None:intergenic |
| GCCACCAAACCAGCAGCCAG+AGG | 0.643731 | 6_3:-6127653 | None:intergenic |
| GCTAAAACTAAGGGGCGTGG+TGG | 0.677320 | 6_3:+6127096 | Msa0935540:CDS |
| GTGGTGCAGGAACTTCTAGA+CGG | 0.688641 | 6_3:+6127115 | Msa0935540:CDS |
| CAAAACGTGCTAAAACTAAG+GGG | 0.704545 | 6_3:+6127088 | Msa0935540:CDS |
| AGAAAGGCATGATACCTGTG+AGG | 0.736671 | 6_3:-6124949 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATTTTATATTCTATTTT+TGG | + | chr6_3:6124974-6124993 | Msa0935540:intron | 10.0% |
| !! | GAATATAAAATTACAAAGAA+AGG | - | chr6_3:6124968-6124987 | None:intergenic | 15.0% |
| !!! | TTTTTTTTTCTTTTCAGTTT+AGG | + | chr6_3:6127374-6127393 | Msa0935540:intron | 15.0% |
| !!! | TTCTATTTTTGGCTAATTTA+TGG | + | chr6_3:6124985-6125004 | Msa0935540:intron | 20.0% |
| !!! | TCTATTTTTGGCTAATTTAT+GGG | + | chr6_3:6124986-6125005 | Msa0935540:intron | 20.0% |
| !!! | ACTTTCTAAGATTTTTCATT+TGG | - | chr6_3:6125553-6125572 | None:intergenic | 20.0% |
| !! | CAAATAATGAATAATCCAAT+TGG | - | chr6_3:6125823-6125842 | None:intergenic | 20.0% |
| !! | CAATTGGATTATTCATTATT+TGG | + | chr6_3:6125821-6125840 | Msa0935540:intron | 20.0% |
| !! | GAATAATAAAAATATTGCCT+TGG | - | chr6_3:6126554-6126573 | None:intergenic | 20.0% |
| ! | TACAGACACTATATTACAAA+GGG | - | chr6_3:6125029-6125048 | None:intergenic | 25.0% |
| ! | ATACAGACACTATATTACAA+AGG | - | chr6_3:6125030-6125049 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTGCATCAGTTTA+TGG | + | chr6_3:6125052-6125071 | Msa0935540:intron | 25.0% |
| ! | ATAGAAAGTGATATGAAAGT+TGG | + | chr6_3:6125086-6125105 | Msa0935540:intron | 25.0% |
| !! | TGGCTTATACATTTTACAAT+TGG | + | chr6_3:6125210-6125229 | Msa0935540:intron | 25.0% |
| !! | TGATTTTATTGGATTTCTTC+CGG | + | chr6_3:6125496-6125515 | Msa0935540:intron | 25.0% |
| ! | ATGAAAAATCTTAGAAAGTC+TGG | + | chr6_3:6125554-6125573 | Msa0935540:intron | 25.0% |
| !!! | TTCATTATTTGGTGATGTTT+TGG | + | chr6_3:6125832-6125851 | Msa0935540:intron | 25.0% |
| ! | TAATCATCATAATCAAACAG+TGG | + | chr6_3:6125916-6125935 | Msa0935540:intron | 25.0% |
| !!! | TTGAAATAAAGTTTTGAACC+TGG | - | chr6_3:6126158-6126177 | None:intergenic | 25.0% |
| ! | CATAGAACATTTACGATTTA+AGG | + | chr6_3:6126438-6126457 | Msa0935540:intron | 25.0% |
| ! | ACAAACCCAATTTCATTATT+TGG | + | chr6_3:6126504-6126523 | Msa0935540:intron | 25.0% |
| ! | TCTCTCCAAATAATGAAATT+GGG | - | chr6_3:6126512-6126531 | None:intergenic | 25.0% |
| ! | ATCTCTCCAAATAATGAAAT+TGG | - | chr6_3:6126513-6126532 | None:intergenic | 25.0% |
| ! | TGTACATATAGTTTCTGTTA+TGG | + | chr6_3:6126756-6126775 | Msa0935540:intron | 25.0% |
| !!! | AAGCTTTAAATCAAAGATCA+AGG | + | chr6_3:6126911-6126930 | Msa0935540:intron | 25.0% |
| !!! | AGCTTTAAATCAAAGATCAA+GGG | + | chr6_3:6126912-6126931 | Msa0935540:intron | 25.0% |
| !!! | TCTTTTTAAGACTCTCATAA+TGG | - | chr6_3:6127002-6127021 | None:intergenic | 25.0% |
| !!! | TTATGTTTTGGTTTTTGTTG+TGG | + | chr6_3:6127527-6127546 | Msa0935540:intron | 25.0% |
| AGTGATATGAAAGTTGGATT+TGG | + | chr6_3:6125092-6125111 | Msa0935540:intron | 30.0% | |
| ATTGAAGGAATGGAAGATAT+AGG | + | chr6_3:6125122-6125141 | Msa0935540:intron | 30.0% | |
| TTGAAGGAATGGAAGATATA+GGG | + | chr6_3:6125123-6125142 | Msa0935540:intron | 30.0% | |
| ! | ATATTTGTTTGCTACAGACA+AGG | + | chr6_3:6125308-6125327 | Msa0935540:intron | 30.0% |
| CAATAAAATCATCATCGACA+AGG | - | chr6_3:6125487-6125506 | None:intergenic | 30.0% | |
| ! | CTTGTCGATGATGATTTTAT+TGG | + | chr6_3:6125485-6125504 | Msa0935540:intron | 30.0% |
| ! | GATTTTATTGGATTTCTTCC+GGG | + | chr6_3:6125497-6125516 | Msa0935540:intron | 30.0% |
| ATTAGAACTTCACAAGCTTA+TGG | + | chr6_3:6125578-6125597 | Msa0935540:intron | 30.0% | |
| !! | CATGTACAATGAAGTTGATA+AGG | + | chr6_3:6125655-6125674 | Msa0935540:intron | 30.0% |
| ATACGTATCTTCAACTTCAT+TGG | - | chr6_3:6125963-6125982 | None:intergenic | 30.0% | |
| AAGTTGAAGATACGTATGTA+TGG | + | chr6_3:6125966-6125985 | Msa0935540:intron | 30.0% | |
| TCGATCAATTTGAAAGAAGA+TGG | + | chr6_3:6126203-6126222 | Msa0935540:intron | 30.0% | |
| TGAAAGAAGATGGAATGAAA+TGG | + | chr6_3:6126213-6126232 | Msa0935540:intron | 30.0% | |
| GTTTGAATTCACAAATTGGA+AGG | + | chr6_3:6126362-6126381 | Msa0935540:intron | 30.0% | |
| TAAAACTCTATCACCATGTA+GGG | - | chr6_3:6126485-6126504 | None:intergenic | 30.0% | |
| !! | AAGCTTTTTGAAGAACAGTA+CGG | - | chr6_3:6126576-6126595 | None:intergenic | 30.0% |
| GTGACTAAATATTGTAGACA+AGG | + | chr6_3:6126649-6126668 | Msa0935540:intron | 30.0% | |
| ACAGAAACTATATGTACACA+AGG | - | chr6_3:6126754-6126773 | None:intergenic | 30.0% | |
| TGTTATGGTACATTTGAACA+TGG | + | chr6_3:6126771-6126790 | Msa0935540:intron | 30.0% | |
| ! | ACAGCGTTGAAAAAAGTAAA+TGG | + | chr6_3:6127204-6127223 | Msa0935540:exon | 30.0% |
| ! | ACTCTGAAGATGATGAATAA+AGG | + | chr6_3:6127280-6127299 | Msa0935540:intron | 30.0% |
| TTGCATCAGTTTATGGAGTT+TGG | + | chr6_3:6125059-6125078 | Msa0935540:intron | 35.0% | |
| !! | GGATTTGGATTTGCTATTGA+AGG | + | chr6_3:6125107-6125126 | Msa0935540:intron | 35.0% |
| !! | TGGATTTGCTATTGAAGGAA+TGG | + | chr6_3:6125112-6125131 | Msa0935540:intron | 35.0% |
| !! | TCATTTTCCAAGTATTGCAG+TGG | + | chr6_3:6125190-6125209 | Msa0935540:intron | 35.0% |
| AATTGGTATGCTCGAATGAA+TGG | + | chr6_3:6125227-6125246 | Msa0935540:intron | 35.0% | |
| ATCAATGTGCACACTACATT+TGG | - | chr6_3:6125411-6125430 | None:intergenic | 35.0% | |
| TAGTCAACGTTGGTATGTAT+GGG | + | chr6_3:6125436-6125455 | Msa0935540:intron | 35.0% | |
| ! | GCACTTTTGCTAATCACTAT+GGG | + | chr6_3:6125600-6125619 | Msa0935540:intron | 35.0% |
| ! | CACTTTTGCTAATCACTATG+GGG | + | chr6_3:6125601-6125620 | Msa0935540:intron | 35.0% |
| ! | ACTTTTGCTAATCACTATGG+GGG | + | chr6_3:6125602-6125621 | Msa0935540:intron | 35.0% |
| GATAAGGATAGACGAAGTAA+AGG | + | chr6_3:6125671-6125690 | Msa0935540:intron | 35.0% | |
| !! | ATGATCCAGCAATGTTTTTG+AGG | + | chr6_3:6125741-6125760 | Msa0935540:intron | 35.0% |
| GTATTCCTCAAAAACATTGC+TGG | - | chr6_3:6125749-6125768 | None:intergenic | 35.0% | |
| !! | AGGAATACAGTTGATGAAGA+AGG | + | chr6_3:6125761-6125780 | Msa0935540:intron | 35.0% |
| !! | ATACAGTTGATGAAGAAGGA+AGG | + | chr6_3:6125765-6125784 | Msa0935540:intron | 35.0% |
| ATGGTTGCTTGATCAATTTG+TGG | + | chr6_3:6125985-6126004 | Msa0935540:intron | 35.0% | |
| CAATTTGTGGAGGTAATGAA+AGG | + | chr6_3:6125998-6126017 | Msa0935540:intron | 35.0% | |
| TTAGCAATGAGGAAAGCAAT+TGG | + | chr6_3:6126055-6126074 | Msa0935540:intron | 35.0% | |
| ! | GCAATTGGAAGAATTTTTCC+TGG | + | chr6_3:6126070-6126089 | Msa0935540:intron | 35.0% |
| AATGAAATGGTGAAAGAGTG+TGG | + | chr6_3:6126226-6126245 | Msa0935540:intron | 35.0% | |
| ! | TGGTGTCGAAGATAATGTTT+GGG | + | chr6_3:6126246-6126265 | Msa0935540:intron | 35.0% |
| TTCAGAACTGTATGAGAAGA+AGG | + | chr6_3:6126270-6126289 | Msa0935540:intron | 35.0% | |
| TGTATGAGAAGAAGGATATG+TGG | + | chr6_3:6126278-6126297 | Msa0935540:intron | 35.0% | |
| GTATGAGAAGAAGGATATGT+GGG | + | chr6_3:6126279-6126298 | Msa0935540:intron | 35.0% | |
| ! | CACATACGAGGTAAGTTTTT+CGG | + | chr6_3:6126310-6126329 | Msa0935540:intron | 35.0% |
| !! | GTAAGTTTTTCGGTGGTTTT+AGG | + | chr6_3:6126320-6126339 | Msa0935540:intron | 35.0% |
| GAGGGTTTGAATTCACAAAT+TGG | + | chr6_3:6126358-6126377 | Msa0935540:intron | 35.0% | |
| ! | TTTACGATTTAAGGAGCATG+AGG | + | chr6_3:6126447-6126466 | Msa0935540:intron | 35.0% |
| GTAAAACTCTATCACCATGT+AGG | - | chr6_3:6126486-6126505 | None:intergenic | 35.0% | |
| ATTGTAGACAAGGAAGTGAA+TGG | + | chr6_3:6126659-6126678 | Msa0935540:intron | 35.0% | |
| GTGAATGGAATGTTTCTTAC+TGG | + | chr6_3:6126674-6126693 | Msa0935540:intron | 35.0% | |
| ! | CATTTGATTTCCATACTCGA+TGG | - | chr6_3:6126700-6126719 | None:intergenic | 35.0% |
| TAGATGGTCAAAAAATGCCA+AGG | + | chr6_3:6126822-6126841 | Msa0935540:intron | 35.0% | |
| GAGAGTCTTAAAAAGAAGCA+TGG | + | chr6_3:6127006-6127025 | Msa0935540:intron | 35.0% | |
| TTCAGTTCTGTTTGCAACAT+TGG | - | chr6_3:6127052-6127071 | None:intergenic | 35.0% | |
| TCCAAAACGTGCTAAAACTA+AGG | + | chr6_3:6127086-6127105 | Msa0935540:CDS | 35.0% | |
| CCAAAACGTGCTAAAACTAA+GGG | + | chr6_3:6127087-6127106 | Msa0935540:CDS | 35.0% | |
| CAAAACGTGCTAAAACTAAG+GGG | + | chr6_3:6127088-6127107 | Msa0935540:CDS | 35.0% | |
| CTTCTAGACGGAAAAATAAG+AGG | + | chr6_3:6127127-6127146 | Msa0935540:CDS | 35.0% | |
| TGTGGTAAATGTGGAATTGT+TGG | + | chr6_3:6127162-6127181 | Msa0935540:CDS | 35.0% | |
| GTCATGTATCTGATGAAGAT+TGG | + | chr6_3:6127256-6127275 | Msa0935540:intron | 35.0% | |
| !! | TCTTTTCAGTTTAGGCATTG+TGG | + | chr6_3:6127382-6127401 | Msa0935540:intron | 35.0% |
| !! | CTTTTCAGTTTAGGCATTGT+GGG | + | chr6_3:6127383-6127402 | Msa0935540:intron | 35.0% |
| ! | GCAAGTGATCTGTTATGTTT+TGG | + | chr6_3:6127515-6127534 | Msa0935540:intron | 35.0% |
| TAGCAGTGAAAATACCTCAC+AGG | + | chr6_3:6124935-6124954 | Msa0935540:five_prime_UTR | 40.0% | |
| GTATAAGCCACTGCAATACT+TGG | - | chr6_3:6125200-6125219 | None:intergenic | 40.0% | |
| !! | TGTAGTGTGCACATTGATTC+TGG | + | chr6_3:6125413-6125432 | Msa0935540:intron | 40.0% |
| TTGATTCTGGTAGTCAACGT+TGG | + | chr6_3:6125426-6125445 | Msa0935540:intron | 40.0% | |
| GTAGTCAACGTTGGTATGTA+TGG | + | chr6_3:6125435-6125454 | Msa0935540:intron | 40.0% | |
| ! | GGCACTTTTGCTAATCACTA+TGG | + | chr6_3:6125599-6125618 | Msa0935540:intron | 40.0% |
| !! | TAGTGATTCTAGAGCTGCTT+TGG | + | chr6_3:6125694-6125713 | Msa0935540:intron | 40.0% |
| GAAGGCTTGAACATTTGTTC+TGG | + | chr6_3:6125783-6125802 | Msa0935540:intron | 40.0% | |
| !! | GAACATTTGTTCTGGAGTGA+TGG | + | chr6_3:6125791-6125810 | Msa0935540:intron | 40.0% |
| !! | ATTTGTTCTGGAGTGATGGT+AGG | + | chr6_3:6125795-6125814 | Msa0935540:intron | 40.0% |
| !!! | AGCCCACTTGTTGTATTTTC+AGG | + | chr6_3:6125890-6125909 | Msa0935540:intron | 40.0% |
| !!! | GCCCACTTGTTGTATTTTCA+GGG | + | chr6_3:6125891-6125910 | Msa0935540:intron | 40.0% |
| CCCCTGAAAATACAACAAGT+GGG | - | chr6_3:6125895-6125914 | None:intergenic | 40.0% | |
| !!! | CCCACTTGTTGTATTTTCAG+GGG | + | chr6_3:6125892-6125911 | Msa0935540:intron | 40.0% |
| ACCCCTGAAAATACAACAAG+TGG | - | chr6_3:6125896-6125915 | None:intergenic | 40.0% | |
| GTTGCTTGATCAATTTGTGG+AGG | + | chr6_3:6125988-6126007 | Msa0935540:intron | 40.0% | |
| !! | CCATCGGTTATCACAGATTT+TGG | - | chr6_3:6126031-6126050 | None:intergenic | 40.0% |
| CCAAAATCTGTGATAACCGA+TGG | + | chr6_3:6126028-6126047 | Msa0935540:intron | 40.0% | |
| ! | GTGGTGTCGAAGATAATGTT+TGG | + | chr6_3:6126245-6126264 | Msa0935540:intron | 40.0% |
| !! | ATACGAGGTAAGTTTTTCGG+TGG | + | chr6_3:6126313-6126332 | Msa0935540:intron | 40.0% |
| TTTGGAGAGATATGCCTCAA+AGG | + | chr6_3:6126522-6126541 | Msa0935540:intron | 40.0% | |
| TGCCTTCGAATGGAATCAAT+GGG | + | chr6_3:6126724-6126743 | Msa0935540:intron | 40.0% | |
| !! | TACCCATTGATTCCATTCGA+AGG | - | chr6_3:6126729-6126748 | None:intergenic | 40.0% |
| GGTTGAAATACCATCGTGTT+TGG | + | chr6_3:6126792-6126811 | Msa0935540:intron | 40.0% | |
| CTATCAAGAACCAAACACGA+TGG | - | chr6_3:6126805-6126824 | None:intergenic | 40.0% | |
| !! | CGTGTTTGGTTCTTGATAGA+TGG | + | chr6_3:6126806-6126825 | Msa0935540:intron | 40.0% |
| !! | TCAAAAGTATCACAGTGCAC+TGG | + | chr6_3:6126859-6126878 | Msa0935540:intron | 40.0% |
| CAAAGATCAAGGGATGTGAA+TGG | + | chr6_3:6126922-6126941 | Msa0935540:intron | 40.0% | |
| ATCAAGGGATGTGAATGGTT+TGG | + | chr6_3:6126927-6126946 | Msa0935540:intron | 40.0% | |
| !!! | CCCTTAGTTTTAGCACGTTT+TGG | - | chr6_3:6127090-6127109 | None:intergenic | 40.0% |
| CACATTTACCACAATGTCCA+CGG | - | chr6_3:6127155-6127174 | None:intergenic | 40.0% | |
| ! | GAAATGGTGATGAGTGATAC+TGG | + | chr6_3:6127408-6127427 | Msa0935540:three_prime_UTR | 40.0% |
| ! | ACGACTGTTTTACGCGTTAA+TGG | + | chr6_3:6127438-6127457 | Msa0935540:three_prime_UTR | 40.0% |
| ! | TGTTTTACGCGTTAATGGTC+TGG | + | chr6_3:6127443-6127462 | Msa0935540:three_prime_UTR | 40.0% |
| !! | GTCTGGAAGTGTGCATTTTT+CGG | + | chr6_3:6127460-6127479 | Msa0935540:intron | 40.0% |
| ! | TTTGTTGTGGTTGCTTGTTC+AGG | + | chr6_3:6127540-6127559 | Msa0935540:intron | 40.0% |
| AGGTACTAGAAACAGATTGC+AGG | - | chr6_3:6127636-6127655 | None:intergenic | 40.0% | |
| !! | CAATCTGTTTCTAGTACCTC+TGG | + | chr6_3:6127637-6127656 | Msa0935540:three_prime_UTR | 40.0% |
| ! | AGAAAGGCATGATACCTGTG+AGG | - | chr6_3:6124952-6124971 | None:intergenic | 45.0% |
| CTGCTCGTAGAAGCAAAGTA+AGG | + | chr6_3:6125255-6125274 | Msa0935540:intron | 45.0% | |
| CATCGACAAGGCTATGATTG+TGG | - | chr6_3:6125475-6125494 | None:intergenic | 45.0% | |
| CCTCATTGCTAAGTCTCCAT+CGG | - | chr6_3:6126047-6126066 | None:intergenic | 45.0% | |
| CCAAGCACATAACCTATGGT+GGG | - | chr6_3:6126098-6126117 | None:intergenic | 45.0% | |
| TATGTGCTTGGCACCTTACA+CGG | + | chr6_3:6126107-6126126 | Msa0935540:intron | 45.0% | |
| GAACCTGGTGTTCTTGACAT+TGG | - | chr6_3:6126143-6126162 | None:intergenic | 45.0% | |
| ! | GAAGAAGGATATGTGGGCTA+CGG | + | chr6_3:6126285-6126304 | Msa0935540:intron | 45.0% |
| TAGGACTACTTCTCGTTGTG+AGG | + | chr6_3:6126339-6126358 | Msa0935540:intron | 45.0% | |
| AGGACTACTTCTCGTTGTGA+GGG | + | chr6_3:6126340-6126359 | Msa0935540:intron | 45.0% | |
| ! | TGCCTCAAAGGTGTATACCA+AGG | + | chr6_3:6126534-6126553 | Msa0935540:intron | 45.0% |
| TGCCTTGGTATACACCTTTG+AGG | - | chr6_3:6126539-6126558 | None:intergenic | 45.0% | |
| TTCTTACTGGCCATCGAGTA+TGG | + | chr6_3:6126687-6126706 | Msa0935540:intron | 45.0% | |
| CAAATGTTCCTGCCTTCGAA+TGG | + | chr6_3:6126714-6126733 | Msa0935540:intron | 45.0% | |
| !! | CATTGATTCCATTCGAAGGC+AGG | - | chr6_3:6126725-6126744 | None:intergenic | 45.0% |
| CTGCCTTCGAATGGAATCAA+TGG | + | chr6_3:6126723-6126742 | Msa0935540:intron | 45.0% | |
| AATGCCAAGGACTCGATAAG+TGG | + | chr6_3:6126835-6126854 | Msa0935540:intron | 45.0% | |
| TGAACCACTTATCGAGTCCT+TGG | - | chr6_3:6126842-6126861 | None:intergenic | 45.0% | |
| ! | AAGTATCACAGTGCACTGGT+TGG | + | chr6_3:6126863-6126882 | Msa0935540:intron | 45.0% |
| !! | AGTATCACAGTGCACTGGTT+GGG | + | chr6_3:6126864-6126883 | Msa0935540:intron | 45.0% |
| CAAGTCTGCGGAAGATTATC+TGG | + | chr6_3:6126954-6126973 | Msa0935540:intron | 45.0% | |
| GAAGCATGGCATACAATCTG+AGG | + | chr6_3:6127020-6127039 | Msa0935540:intron | 45.0% | |
| CGTGGACATTGTGGTAAATG+TGG | + | chr6_3:6127153-6127172 | Msa0935540:CDS | 45.0% | |
| ! | TTAGGCATTGTGGGTCGAAA+TGG | + | chr6_3:6127392-6127411 | Msa0935540:intron | 45.0% |
| TGATGAGTGATACTGGTGTC+CGG | + | chr6_3:6127415-6127434 | Msa0935540:three_prime_UTR | 45.0% | |
| TAACGCGTAAAACAGTCGTC+CGG | - | chr6_3:6127437-6127456 | None:intergenic | 45.0% | |
| ! | TGGTTGCTTGTTCAGGTTTC+TGG | + | chr6_3:6127547-6127566 | Msa0935540:intron | 45.0% |
| GTCTGACAGTTGTTCAAGTC+TGG | + | chr6_3:6127569-6127588 | Msa0935540:three_prime_UTR | 45.0% | |
| ! | GTGCTTCCACTCTAGTGTTT+TGG | + | chr6_3:6127591-6127610 | Msa0935540:three_prime_UTR | 45.0% |
| CGATAAAATCCGTAAGCGCG+AGG | + | chr6_3:6125355-6125374 | Msa0935540:intron | 50.0% | |
| GCAAGAGCTAACACTAGGTG+CGG | + | chr6_3:6125377-6125396 | Msa0935540:intron | 50.0% | |
| TTGGATTTCTTCCGGGTCAC+AGG | + | chr6_3:6125504-6125523 | Msa0935540:intron | 50.0% | |
| TGGATTTCTTCCGGGTCACA+GGG | + | chr6_3:6125505-6125524 | Msa0935540:intron | 50.0% | |
| GAGTGATGGTAGGAGCCAAT+TGG | + | chr6_3:6125805-6125824 | Msa0935540:intron | 50.0% | |
| CCGATGGAGACTTAGCAATG+AGG | + | chr6_3:6126044-6126063 | Msa0935540:intron | 50.0% | |
| ! | TTTTTCCTGGTGCCCACCAT+AGG | + | chr6_3:6126083-6126102 | Msa0935540:intron | 50.0% |
| CCCACCATAGGTTATGTGCT+TGG | + | chr6_3:6126095-6126114 | Msa0935540:intron | 50.0% | |
| GCCAAGCACATAACCTATGG+TGG | - | chr6_3:6126099-6126118 | None:intergenic | 50.0% | |
| GGTGCCAAGCACATAACCTA+TGG | - | chr6_3:6126102-6126121 | None:intergenic | 50.0% | |
| CGTCCAATGTCAAGAACACC+AGG | + | chr6_3:6126137-6126156 | Msa0935540:intron | 50.0% | |
| !! | GCTGATTTTGCGTCCCTACA+TGG | + | chr6_3:6126469-6126488 | Msa0935540:intron | 50.0% |
| AGCTTCTGCTGTCACAGTGA+AGG | + | chr6_3:6126591-6126610 | Msa0935540:intron | 50.0% | |
| ! | TGGTTTGGCATGCAAGTCTG+CGG | + | chr6_3:6126942-6126961 | Msa0935540:intron | 50.0% |
| GTGGTGCAGGAACTTCTAGA+CGG | + | chr6_3:6127115-6127134 | Msa0935540:CDS | 50.0% | |
| CCAACGCCAAAACACTAGAG+TGG | - | chr6_3:6127600-6127619 | None:intergenic | 50.0% | |
| !!! | CCACTCTAGTGTTTTGGCGT+TGG | + | chr6_3:6127597-6127616 | Msa0935540:three_prime_UTR | 50.0% |
| TAGCTCTTGCCTCGCGCTTA+CGG | - | chr6_3:6125367-6125386 | None:intergenic | 55.0% | |
| GCGAGGCAAGAGCTAACACT+AGG | + | chr6_3:6125372-6125391 | Msa0935540:intron | 55.0% | |
| GGATTTCTTCCGGGTCACAG+GGG | + | chr6_3:6125506-6125525 | Msa0935540:intron | 55.0% | |
| GATTTCTTCCGGGTCACAGG+GGG | + | chr6_3:6125507-6125526 | Msa0935540:intron | 55.0% | |
| !! | CATAACCTATGGTGGGCACC+AGG | - | chr6_3:6126091-6126110 | None:intergenic | 55.0% |
| TGGACGTTGCGTTCCGTGTA+AGG | - | chr6_3:6126123-6126142 | None:intergenic | 55.0% | |
| CGTGCTAAAACTAAGGGGCG+TGG | + | chr6_3:6127093-6127112 | Msa0935540:CDS | 55.0% | |
| ! | GCTAAAACTAAGGGGCGTGG+TGG | + | chr6_3:6127096-6127115 | Msa0935540:CDS | 55.0% |
| !! | CGGAAAAATAAGAGGCGCCG+TGG | + | chr6_3:6127135-6127154 | Msa0935540:CDS | 55.0% |
| TCATCCATCCCCCTGTGACC+CGG | - | chr6_3:6125518-6125537 | None:intergenic | 60.0% | |
| TGGGCTACGGCACACATACG+AGG | + | chr6_3:6126298-6126317 | Msa0935540:intron | 60.0% | |
| !! | AAGAGGCGCCGTGGACATTG+TGG | + | chr6_3:6127144-6127163 | Msa0935540:CDS | 60.0% |
| TCTTCCGGGTCACAGGGGGA+TGG | + | chr6_3:6125511-6125530 | Msa0935540:intron | 65.0% | |
| ! | ACTAAGGGGCGTGGTGGTGC+AGG | + | chr6_3:6127102-6127121 | Msa0935540:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 6124914 | 6127665 | 6124914 | ID=Msa0935540;Name=Msa0935540 |
| chr6_3 | mRNA | 6124914 | 6127665 | 6124914 | ID=Msa0935540-mRNA-1;Parent=Msa0935540;Name=Msa0935540-mRNA-1;_AED=0.51;_eAED=0.71;_QI=47|0|0|0.75|0.33|0.25|4|223|62 |
| chr6_3 | exon | 6124914 | 6124956 | 6124914 | ID=Msa0935540-mRNA-1:exon:1885;Parent=Msa0935540-mRNA-1 |
| chr6_3 | exon | 6127021 | 6127260 | 6127021 | ID=Msa0935540-mRNA-1:exon:1886;Parent=Msa0935540-mRNA-1 |
| chr6_3 | exon | 6127396 | 6127467 | 6127396 | ID=Msa0935540-mRNA-1:exon:1887;Parent=Msa0935540-mRNA-1 |
| chr6_3 | exon | 6127562 | 6127665 | 6127562 | ID=Msa0935540-mRNA-1:exon:1888;Parent=Msa0935540-mRNA-1 |
| chr6_3 | five_prime_UTR | 6124914 | 6124956 | 6124914 | ID=Msa0935540-mRNA-1:five_prime_utr;Parent=Msa0935540-mRNA-1 |
| chr6_3 | five_prime_UTR | 6127021 | 6127024 | 6127021 | ID=Msa0935540-mRNA-1:five_prime_utr;Parent=Msa0935540-mRNA-1 |
| chr6_3 | CDS | 6127025 | 6127213 | 6127025 | ID=Msa0935540-mRNA-1:cds;Parent=Msa0935540-mRNA-1 |
| chr6_3 | three_prime_UTR | 6127214 | 6127260 | 6127214 | ID=Msa0935540-mRNA-1:three_prime_utr;Parent=Msa0935540-mRNA-1 |
| chr6_3 | three_prime_UTR | 6127396 | 6127467 | 6127396 | ID=Msa0935540-mRNA-1:three_prime_utr;Parent=Msa0935540-mRNA-1 |
| chr6_3 | three_prime_UTR | 6127562 | 6127665 | 6127562 | ID=Msa0935540-mRNA-1:three_prime_utr;Parent=Msa0935540-mRNA-1 |
| Gene Sequence |
| Protein sequence |
