Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698930 | XP_024637015.1 | 86.992 | 123 | 4 | 4 | 1 | 122 | 1 | 112 | 1.64e-52 | 171 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698930 | A0A072UNM1 | 86.992 | 123 | 4 | 4 | 1 | 122 | 1 | 112 | 7.81e-53 | 171 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0014710 | Msa0698930 | 0.800272 | 1.557575e-48 | -8.615850e-47 |
| Msa0026910 | Msa0698930 | 0.806684 | 7.299102e-50 | -8.615850e-47 |
| Msa0029850 | Msa0698930 | 0.816335 | 5.831899e-52 | -8.615850e-47 |
| Msa0036920 | Msa0698930 | 0.808876 | 2.497379e-50 | -8.615850e-47 |
| Msa0037880 | Msa0698930 | 0.810018 | 1.419597e-50 | -8.615850e-47 |
| Msa0039330 | Msa0698930 | 0.824557 | 7.565735e-54 | -8.615850e-47 |
| Msa0042920 | Msa0698930 | 0.802989 | 4.317781e-49 | -8.615850e-47 |
| Msa0050380 | Msa0698930 | 0.960314 | 2.034697e-118 | -8.615850e-47 |
| Msa0075880 | Msa0698930 | 0.812775 | 3.577247e-51 | -8.615850e-47 |
| Msa0090100 | Msa0698930 | 0.820108 | 8.162735e-53 | -8.615850e-47 |
| Msa0092990 | Msa0698930 | 0.803901 | 2.793924e-49 | -8.615850e-47 |
| Msa0102120 | Msa0698930 | 0.844799 | 6.042256e-59 | -8.615850e-47 |
| Msa0114430 | Msa0698930 | 0.815587 | 8.566203e-52 | -8.615850e-47 |
| Msa0117770 | Msa0698930 | 0.818410 | 1.989228e-52 | -8.615850e-47 |
| Msa0613460 | Msa0698930 | 0.820042 | 8.451045e-53 | -8.615850e-47 |
| Msa0620960 | Msa0698930 | 0.800587 | 1.344010e-48 | -8.615850e-47 |
| Msa0626090 | Msa0698930 | 0.835965 | 1.234356e-56 | -8.615850e-47 |
| Msa0626990 | Msa0698930 | 0.808920 | 2.443357e-50 | -8.615850e-47 |
| Msa0627350 | Msa0698930 | 0.806510 | 7.944242e-50 | -8.615850e-47 |
| Msa0647830 | Msa0698930 | 0.801699 | 7.958991e-49 | -8.615850e-47 |
| Msa0654010 | Msa0698930 | 0.821390 | 4.141595e-53 | -8.615850e-47 |
| Msa0658570 | Msa0698930 | 0.819038 | 1.432177e-52 | -8.615850e-47 |
| Msa0662650 | Msa0698930 | 0.815156 | 1.068029e-51 | -8.615850e-47 |
| Msa0672690 | Msa0698930 | 0.814641 | 1.388920e-51 | -8.615850e-47 |
| Msa0678800 | Msa0698930 | -0.807474 | 4.965722e-50 | -8.615850e-47 |
| Msa0690440 | Msa0698930 | 0.814016 | 1.909645e-51 | -8.615850e-47 |
| Msa0698930 | Msa0701010 | 0.813169 | 2.932879e-51 | -8.615850e-47 |
| Msa0698930 | Msa0708860 | 0.817508 | 3.179923e-52 | -8.615850e-47 |
| Msa0698930 | Msa0723650 | 0.804232 | 2.384134e-49 | -8.615850e-47 |
| Msa0698930 | Msa0731180 | 0.800040 | 1.736413e-48 | -8.615850e-47 |
| Msa0698930 | Msa0731940 | 0.807105 | 5.946367e-50 | -8.615850e-47 |
| Msa0698930 | Msa0735170 | 0.806750 | 7.067249e-50 | -8.615850e-47 |
| Msa0698930 | Msa0744170 | -0.818092 | 2.346963e-52 | -8.615850e-47 |
| Msa0698930 | Msa0766630 | 0.824627 | 7.284126e-54 | -8.615850e-47 |
| Msa0698930 | Msa0768290 | 0.815630 | 8.378424e-52 | -8.615850e-47 |
| Msa0698930 | Msa0768370 | 0.806038 | 9.988488e-50 | -8.615850e-47 |
| Msa0698930 | Msa0773310 | 0.813724 | 2.214879e-51 | -8.615850e-47 |
| Msa0698930 | Msa0787470 | 0.801044 | 1.084266e-48 | -8.615850e-47 |
| Msa0698930 | Msa0794510 | -0.817375 | 3.407885e-52 | -8.615850e-47 |
| Msa0698930 | Msa0807030 | 0.839860 | 1.230840e-57 | -8.615850e-47 |
| Msa0698930 | Msa0810220 | 0.802070 | 6.677518e-49 | -8.615850e-47 |
| Msa0698930 | Msa0820850 | 0.812889 | 3.378601e-51 | -8.615850e-47 |
| Msa0698930 | Msa0825240 | -0.805453 | 1.324949e-49 | -8.615850e-47 |
| Msa0698930 | Msa0831850 | 0.805574 | 1.249795e-49 | -8.615850e-47 |
| Msa0698930 | Msa0832970 | 0.825459 | 4.632930e-54 | -8.615850e-47 |
| Msa0698930 | Msa0844900 | 0.814246 | 1.699099e-51 | -8.615850e-47 |
| Msa0698930 | Msa0845000 | 0.837807 | 4.179579e-57 | -8.615850e-47 |
| Msa0698930 | Msa0847880 | 0.800331 | 1.515346e-48 | -8.615850e-47 |
| Msa0698930 | Msa0861130 | 0.807974 | 3.888647e-50 | -8.615850e-47 |
| Msa0698930 | Msa0874630 | 0.823754 | 1.168162e-53 | -8.615850e-47 |
| Msa0698930 | Msa0876580 | 0.814030 | 1.895979e-51 | -8.615850e-47 |
| Msa0698930 | Msa0877250 | 0.803931 | 2.754071e-49 | -8.615850e-47 |
| Msa0698930 | Msa0882690 | 0.806652 | 7.412428e-50 | -8.615850e-47 |
| Msa0698930 | Msa0885190 | 0.815382 | 9.514115e-52 | -8.615850e-47 |
| Msa0698930 | Msa0885210 | 0.817440 | 3.294647e-52 | -8.615850e-47 |
| Msa0698930 | Msa0894720 | 0.811397 | 7.146770e-51 | -8.615850e-47 |
| Msa0698930 | Msa0899450 | 0.800660 | 1.298772e-48 | -8.615850e-47 |
| Msa0698930 | Msa0907070 | 0.820639 | 6.167847e-53 | -8.615850e-47 |
| Msa0698930 | Msa0908770 | -0.809107 | 2.228119e-50 | -8.615850e-47 |
| Msa0698930 | Msa0913480 | -0.821574 | 3.755209e-53 | -8.615850e-47 |
| Msa0698930 | Msa0919850 | 0.804506 | 2.090492e-49 | -8.615850e-47 |
| Msa0698930 | Msa0924310 | 0.802286 | 6.028060e-49 | -8.615850e-47 |
| Msa0698930 | Msa0925870 | 0.814911 | 1.210463e-51 | -8.615850e-47 |
| Msa0698930 | Msa0927380 | 0.805812 | 1.113919e-49 | -8.615850e-47 |
| Msa0698930 | Msa0931520 | 0.812726 | 3.667648e-51 | -8.615850e-47 |
| Msa0698930 | Msa0935540 | 0.804310 | 2.296650e-49 | -8.615850e-47 |
| Msa0698930 | Msa0936300 | 0.821489 | 3.928676e-53 | -8.615850e-47 |
| Msa0698930 | Msa0967180 | 0.813032 | 3.142337e-51 | -8.615850e-47 |
| Msa0698930 | Msa0969520 | 0.819477 | 1.138145e-52 | -8.615850e-47 |
| Msa0698930 | Msa0973100 | 0.818266 | 2.144250e-52 | -8.615850e-47 |
| Msa0698930 | Msa0982270 | 0.800415 | 1.456637e-48 | -8.615850e-47 |
| Msa0698930 | Msa0991930 | 0.809002 | 2.346492e-50 | -8.615850e-47 |
| Msa0698930 | Msa0992280 | 0.807092 | 5.983959e-50 | -8.615850e-47 |
| Msa0698930 | Msa0998690 | 0.806686 | 7.291508e-50 | -8.615850e-47 |
| Msa0698930 | Msa1001390 | 0.809786 | 1.593001e-50 | -8.615850e-47 |
| Msa0698930 | Msa1006850 | 0.819528 | 1.107995e-52 | -8.615850e-47 |
| Msa0698930 | Msa1014540 | 0.831771 | 1.381860e-55 | -8.615850e-47 |
| Msa0698930 | Msa1015730 | 0.819194 | 1.320330e-52 | -8.615850e-47 |
| Msa0698930 | Msa1015790 | 0.826273 | 2.970309e-54 | -8.615850e-47 |
| Msa0698930 | Msa1028970 | 0.848896 | 4.574400e-60 | -8.615850e-47 |
| Msa0698930 | Msa1035310 | 0.824978 | 6.022821e-54 | -8.615850e-47 |
| Msa0698930 | Msa1039880 | 0.810636 | 1.044727e-50 | -8.615850e-47 |
| Msa0698930 | Msa1041730 | 0.812488 | 4.133454e-51 | -8.615850e-47 |
| Msa0698930 | Msa1059570 | 0.833657 | 4.702808e-56 | -8.615850e-47 |
| Msa0698930 | Msa1061020 | -0.800056 | 1.723451e-48 | -8.615850e-47 |
| Msa0698930 | Msa1065490 | 0.800634 | 1.314444e-48 | -8.615850e-47 |
| Msa0698930 | Msa1068200 | -0.825853 | 3.737642e-54 | -8.615850e-47 |
| Msa0698930 | Msa1071110 | 0.800146 | 1.652869e-48 | -8.615850e-47 |
| Msa0698930 | Msa1075080 | -0.847827 | 9.037720e-60 | -8.615850e-47 |
| Msa0698930 | Msa1075220 | -0.826967 | 2.027860e-54 | -8.615850e-47 |
| Msa0698930 | Msa1082500 | 0.803548 | 3.308219e-49 | -8.615850e-47 |
| Msa0698930 | Msa1082580 | 0.832782 | 7.766075e-56 | -8.615850e-47 |
| Msa0698930 | Msa1084260 | 0.839136 | 1.897290e-57 | -8.615850e-47 |
| Msa0698930 | Msa1091830 | 0.802312 | 5.956461e-49 | -8.615850e-47 |
| Msa0698930 | Msa1098250 | 0.806583 | 7.664553e-50 | -8.615850e-47 |
| Msa0698930 | Msa1100480 | 0.807816 | 4.200875e-50 | -8.615850e-47 |
| Msa0698930 | Msa1116440 | 0.825379 | 4.840844e-54 | -8.615850e-47 |
| Msa0698930 | Msa1121450 | -0.802264 | 6.091369e-49 | -8.615850e-47 |
| Msa0698930 | Msa1121490 | 0.811090 | 8.331370e-51 | -8.615850e-47 |
| Msa0698930 | Msa1124540 | -0.829410 | 5.228154e-55 | -8.615850e-47 |
| Msa0698930 | Msa1131940 | -0.805574 | 1.250176e-49 | -8.615850e-47 |
| Msa0698930 | Msa1139000 | -0.807194 | 5.693612e-50 | -8.615850e-47 |
| Msa0698930 | Msa1144720 | -0.806885 | 6.619438e-50 | -8.615850e-47 |
| Msa0698930 | Msa1148050 | 0.814427 | 1.549080e-51 | -8.615850e-47 |
| Msa0698930 | Msa1156020 | 0.813608 | 2.348332e-51 | -8.615850e-47 |
| Msa0698930 | Msa1156340 | -0.825808 | 3.830104e-54 | -8.615850e-47 |
| Msa0698930 | Msa1162550 | -0.830383 | 3.028750e-55 | -8.615850e-47 |
| Msa0698930 | Msa1167220 | 0.809958 | 1.462768e-50 | -8.615850e-47 |
| Msa0698930 | Msa1186950 | -0.808533 | 2.955922e-50 | -8.615850e-47 |
| Msa0698930 | Msa1195190 | 0.806920 | 6.506585e-50 | -8.615850e-47 |
| Msa0698930 | Msa1205390 | 0.804466 | 2.131297e-49 | -8.615850e-47 |
| Msa0698930 | Msa1228590 | 0.805513 | 1.287376e-49 | -8.615850e-47 |
| Msa0698930 | Msa1233500 | 0.802757 | 4.821853e-49 | -8.615850e-47 |
| Msa0698930 | Msa1233890 | 0.821749 | 3.421819e-53 | -8.615850e-47 |
| Msa0698930 | Msa1247030 | 0.814690 | 1.355041e-51 | -8.615850e-47 |
| Msa0698930 | Msa1249490 | 0.802861 | 4.587888e-49 | -8.615850e-47 |
| Msa0698930 | Msa1262990 | -0.802085 | 6.633129e-49 | -8.615850e-47 |
| Msa0698930 | Msa1281510 | 0.814357 | 1.605335e-51 | -8.615850e-47 |
| Msa0698930 | Msa1282580 | -0.810146 | 1.332758e-50 | -8.615850e-47 |
| Msa0698930 | Msa1284680 | 0.816145 | 6.430266e-52 | -8.615850e-47 |
| Msa0698930 | Msa1284710 | 0.846141 | 2.617385e-59 | -8.615850e-47 |
| Msa0698930 | Msa1288340 | 0.819546 | 1.097181e-52 | -8.615850e-47 |
| Msa0698930 | Msa1291660 | 0.841817 | 3.773926e-58 | -8.615850e-47 |
| Msa0698930 | Msa1297310 | 0.807845 | 4.143213e-50 | -8.615850e-47 |
| Msa0698930 | Msa1310700 | 0.818015 | 2.443528e-52 | -8.615850e-47 |
| Msa0698930 | Msa1311340 | 0.835753 | 1.396616e-56 | -8.615850e-47 |
| Msa0698930 | Msa1329700 | 0.820607 | 6.272931e-53 | -8.615850e-47 |
| Msa0698930 | Msa1359040 | 0.808194 | 3.491440e-50 | -8.615850e-47 |
| Msa0698930 | Msa1362880 | 0.815840 | 7.522652e-52 | -8.615850e-47 |
| Msa0698930 | Msa1364830 | 0.815347 | 9.683641e-52 | -8.615850e-47 |
| Msa0698930 | Msa1372760 | 0.800646 | 1.307165e-48 | -8.615850e-47 |
| Msa0698930 | Msa1376890 | 0.820689 | 6.006977e-53 | -8.615850e-47 |
| Msa0698930 | Msa1379850 | 0.805706 | 1.172770e-49 | -8.615850e-47 |
| Msa0698930 | Msa1385000 | 0.801462 | 8.901977e-49 | -8.615850e-47 |
| Msa0698930 | Msa1385020 | 0.808160 | 3.549714e-50 | -8.615850e-47 |
| Msa0698930 | Msa1390050 | 0.816219 | 6.191374e-52 | -8.615850e-47 |
| Msa0698930 | Msa1394310 | 0.810457 | 1.142015e-50 | -8.615850e-47 |
| Msa0698930 | Msa1420820 | 0.827744 | 1.320653e-54 | -8.615850e-47 |
| Msa0698930 | Msa1427230 | 0.814526 | 1.473293e-51 | -8.615850e-47 |
| Msa0698930 | Msa1451620 | -0.867560 | 1.250617e-65 | -8.615850e-47 |
| Msa0698930 | Msa1453560 | 0.821893 | 3.169077e-53 | -8.615850e-47 |
| Msa0698930 | Msa1457030 | 0.803092 | 4.110715e-49 | -8.615850e-47 |
| Msa0698930 | Msa1458550 | 0.818822 | 1.603803e-52 | -8.615850e-47 |
| Msa0698930 | Msa1460830 | 0.800317 | 1.525589e-48 | -8.615850e-47 |
| Msa0698930 | Msa1462070 | 0.801074 | 1.068740e-48 | -8.615850e-47 |
| Msa0130970 | Msa0698930 | 0.813865 | 2.061553e-51 | -8.615850e-47 |
| Msa0131770 | Msa0698930 | 0.804627 | 1.972769e-49 | -8.615850e-47 |
| Msa0137570 | Msa0698930 | 0.812864 | 3.421291e-51 | -8.615850e-47 |
| Msa0147250 | Msa0698930 | 0.807127 | 5.881986e-50 | -8.615850e-47 |
| Msa0169820 | Msa0698930 | 0.819371 | 1.202675e-52 | -8.615850e-47 |
| Msa0178930 | Msa0698930 | 0.803784 | 2.954719e-49 | -8.615850e-47 |
| Msa0188460 | Msa0698930 | 0.809145 | 2.186761e-50 | -8.615850e-47 |
| Msa0198910 | Msa0698930 | 0.813303 | 2.740152e-51 | -8.615850e-47 |
| Msa0202720 | Msa0698930 | 0.818993 | 1.466772e-52 | -8.615850e-47 |
| Msa0210450 | Msa0698930 | 0.800605 | 1.332519e-48 | -8.615850e-47 |
| Msa0220580 | Msa0698930 | 0.816487 | 5.391410e-52 | -8.615850e-47 |
| Msa0223010 | Msa0698930 | 0.802873 | 4.561844e-49 | -8.615850e-47 |
| Msa0365490 | Msa0698930 | 0.833049 | 6.665449e-56 | -8.615850e-47 |
| Msa0376590 | Msa0698930 | 0.850109 | 2.099500e-60 | -8.615850e-47 |
| Msa0379640 | Msa0698930 | 0.804952 | 1.687644e-49 | -8.615850e-47 |
| Msa0380850 | Msa0698930 | 0.810191 | 1.303151e-50 | -8.615850e-47 |
| Msa0381600 | Msa0698930 | -0.810722 | 1.000805e-50 | -8.615850e-47 |
| Msa0381620 | Msa0698930 | -0.814514 | 1.482419e-51 | -8.615850e-47 |
| Msa0392040 | Msa0698930 | -0.805503 | 1.293501e-49 | -8.615850e-47 |
| Msa0406880 | Msa0698930 | 0.807018 | 6.205216e-50 | -8.615850e-47 |
| Msa0424320 | Msa0698930 | 0.802846 | 4.620869e-49 | -8.615850e-47 |
| Msa0426900 | Msa0698930 | 0.818121 | 2.312448e-52 | -8.615850e-47 |
| Msa0436370 | Msa0698930 | 0.804709 | 1.896410e-49 | -8.615850e-47 |
| Msa0458440 | Msa0698930 | 0.840703 | 7.410642e-58 | -8.615850e-47 |
| Msa0466390 | Msa0698930 | 0.821995 | 3.001273e-53 | -8.615850e-47 |
| Msa0469940 | Msa0698930 | -0.818531 | 1.867505e-52 | -8.615850e-47 |
| Msa0473240 | Msa0698930 | 0.802824 | 4.669958e-49 | -8.615850e-47 |
| Msa0479340 | Msa0698930 | 0.812155 | 4.887255e-51 | -8.615850e-47 |
| Msa0249560 | Msa0698930 | 0.832908 | 7.228094e-56 | -8.615850e-47 |
| Msa0251640 | Msa0698930 | 0.819413 | 1.176843e-52 | -8.615850e-47 |
| Msa0258760 | Msa0698930 | 0.811097 | 8.301633e-51 | -8.615850e-47 |
| Msa0266690 | Msa0698930 | 0.811457 | 6.935859e-51 | -8.615850e-47 |
| Msa0266720 | Msa0698930 | 0.815138 | 1.078027e-51 | -8.615850e-47 |
| Msa0269450 | Msa0698930 | 0.811909 | 5.529914e-51 | -8.615850e-47 |
| Msa0278190 | Msa0698930 | 0.834190 | 3.459359e-56 | -8.615850e-47 |
| Msa0288100 | Msa0698930 | 0.841224 | 5.410054e-58 | -8.615850e-47 |
| Msa0305190 | Msa0698930 | 0.803503 | 3.379932e-49 | -8.615850e-47 |
| Msa0306210 | Msa0698930 | -0.814754 | 1.311746e-51 | -8.615850e-47 |
| Msa0319170 | Msa0698930 | 0.804860 | 1.763681e-49 | -8.615850e-47 |
| Msa0340450 | Msa0698930 | 0.800411 | 1.459504e-48 | -8.615850e-47 |
| Msa0342070 | Msa0698930 | 0.820138 | 8.036340e-53 | -8.615850e-47 |
| Msa0344690 | Msa0698930 | -0.831075 | 2.049740e-55 | -8.615850e-47 |
| Msa0344920 | Msa0698930 | 0.802874 | 4.560890e-49 | -8.615850e-47 |
| Msa0350990 | Msa0698930 | 0.817805 | 2.725701e-52 | -8.615850e-47 |
| Msa0351030 | Msa0698930 | 0.826124 | 3.223089e-54 | -8.615850e-47 |
| Msa0351100 | Msa0698930 | 0.814060 | 1.867239e-51 | -8.615850e-47 |
| Msa0484780 | Msa0698930 | 0.815447 | 9.199934e-52 | -8.615850e-47 |
| Msa0490140 | Msa0698930 | 0.817968 | 2.504583e-52 | -8.615850e-47 |
| Msa0512900 | Msa0698930 | 0.805102 | 1.570029e-49 | -8.615850e-47 |
| Msa0516370 | Msa0698930 | 0.848235 | 6.975180e-60 | -8.615850e-47 |
| Msa0518380 | Msa0698930 | 0.804395 | 2.205343e-49 | -8.615850e-47 |
| Msa0523940 | Msa0698930 | 0.808167 | 3.538587e-50 | -8.615850e-47 |
| Msa0525610 | Msa0698930 | 0.802163 | 6.391339e-49 | -8.615850e-47 |
| Msa0530650 | Msa0698930 | 0.809959 | 1.461882e-50 | -8.615850e-47 |
| Msa0553460 | Msa0698930 | 0.802556 | 5.304370e-49 | -8.615850e-47 |
| Msa0558690 | Msa0698930 | 0.811952 | 5.412307e-51 | -8.615850e-47 |
| Msa0565350 | Msa0698930 | 0.804958 | 1.682392e-49 | -8.615850e-47 |
| Msa0566500 | Msa0698930 | -0.807431 | 5.072242e-50 | -8.615850e-47 |
| Msa0572480 | Msa0698930 | 0.815638 | 8.342329e-52 | -8.615850e-47 |
| Msa0585230 | Msa0698930 | 0.826982 | 2.011753e-54 | -8.615850e-47 |
| Msa0587190 | Msa0698930 | 0.803661 | 3.134553e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0698930 | MtrunA17_Chr4g0052371 | 86.992 | 123 | 4 | 4 | 1 | 122 | 1 | 112 | 1.50e-56 | 171 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 29 sgRNAs with CRISPR-Local
Find 41 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAACCAGCAGACGATTATTT+TGG | 0.182988 | 4_4:+69389171 | Msa0698930:intron |
| TCCATTGTCCGGAACTCTTT+TGG | 0.290169 | 4_4:+69388866 | Msa0698930:CDS |
| TCAGGATTTAATTGAAATCA+AGG | 0.374856 | 4_4:+69389062 | Msa0698930:CDS |
| TGCTGCAAAGCAGGCAGCCA+AGG | 0.380640 | 4_4:+69389237 | Msa0698930:CDS |
| TGAATTTGCCAAAAGAGTTC+CGG | 0.381401 | 4_4:-69388874 | None:intergenic |
| TCCCCTTCCGATTGGGTAGC+CGG | 0.386098 | 4_4:-69388838 | None:intergenic |
| CTTCCGAACTTTAGTTGCCT+TGG | 0.396128 | 4_4:-69389254 | None:intergenic |
| GAGTAAAGCTGCTGCAAAGC+AGG | 0.435629 | 4_4:+69389228 | Msa0698930:CDS |
| ATTAAATCCTGAGGAATGTT+GGG | 0.440220 | 4_4:-69389051 | None:intergenic |
| AATTAAATCCTGAGGAATGT+TGG | 0.444643 | 4_4:-69389052 | None:intergenic |
| CAAGCTTATGATTTCCTCAC+TGG | 0.467518 | 4_4:+69389011 | Msa0698930:CDS |
| GATTTACTCCCCTTCCGATT+GGG | 0.479142 | 4_4:-69388845 | None:intergenic |
| ACGTACGCCGGCTACCCAAT+CGG | 0.500846 | 4_4:+69388831 | Msa0698930:CDS |
| GGATTTACTCCCCTTCCGAT+TGG | 0.503941 | 4_4:-69388846 | None:intergenic |
| CAGCCAAGGCAACTAAAGTT+CGG | 0.506043 | 4_4:+69389251 | Msa0698930:CDS |
| GCAGAAGGGGAAGAAAGTGT+TGG | 0.512031 | 4_4:+69389324 | Msa0698930:CDS |
| GAAGGAGCCCAACATTCCTC+AGG | 0.521672 | 4_4:+69389044 | Msa0698930:CDS |
| ATTGGGTAGCCGGCGTACGT+TGG | 0.539138 | 4_4:-69388828 | None:intergenic |
| GCCAAAAGAGTTCCGGACAA+TGG | 0.540316 | 4_4:-69388867 | None:intergenic |
| AGTAAAATTCATAAGCAGAA+GGG | 0.542068 | 4_4:+69389310 | Msa0698930:CDS |
| AGGGGAGTAAATCCATTGTC+CGG | 0.546668 | 4_4:+69388855 | Msa0698930:CDS |
| GCCGGCTACCCAATCGGAAG+GGG | 0.548832 | 4_4:+69388837 | Msa0698930:CDS |
| GTAAAATTCATAAGCAGAAG+GGG | 0.557860 | 4_4:+69389311 | Msa0698930:CDS |
| AAGTAAAATTCATAAGCAGA+AGG | 0.561096 | 4_4:+69389309 | Msa0698930:CDS |
| TTGATTTCAATTAAATCCTG+AGG | 0.568823 | 4_4:-69389060 | None:intergenic |
| ACGCCGGCTACCCAATCGGA+AGG | 0.586765 | 4_4:+69388835 | Msa0698930:CDS |
| TACTCTGTCGATATTCAGCA+AGG | 0.588341 | 4_4:-69389210 | None:intergenic |
| CGCCGGCTACCCAATCGGAA+GGG | 0.588497 | 4_4:+69388836 | Msa0698930:CDS |
| AAGCAAAATCCAACGTACGC+CGG | 0.639196 | 4_4:+69388819 | Msa0698930:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| ! | TTGATTTCAATTAAATCCTG+AGG | - | chr4_4:69389063-69389082 | None:intergenic | 25.0% |
| ! | TCAGGATTTAATTGAAATCA+AGG | + | chr4_4:69389062-69389081 | Msa0698930:CDS | 25.0% |
| ! | AAGTAAAATTCATAAGCAGA+AGG | + | chr4_4:69389309-69389328 | Msa0698930:CDS | 25.0% |
| ! | AGTAAAATTCATAAGCAGAA+GGG | + | chr4_4:69389310-69389329 | Msa0698930:CDS | 25.0% |
| ! | AACTCTTTTGGCAAATTCAA+AGG | + | chr4_4:69388878-69388897 | Msa0698930:CDS | 30.0% |
| ! | ATTCAAAGGCAAGTTTTTCT+CGG | + | chr4_4:69388892-69388911 | Msa0698930:intron | 30.0% |
| ATATCACTCTTTATACCAAC+AGG | + | chr4_4:69388969-69388988 | Msa0698930:intron | 30.0% | |
| ATTAAATCCTGAGGAATGTT+GGG | - | chr4_4:69389054-69389073 | None:intergenic | 30.0% | |
| AATTAAATCCTGAGGAATGT+TGG | - | chr4_4:69389055-69389074 | None:intergenic | 30.0% | |
| GTAAAATTCATAAGCAGAAG+GGG | + | chr4_4:69389311-69389330 | Msa0698930:CDS | 30.0% | |
| TGAATTTGCCAAAAGAGTTC+CGG | - | chr4_4:69388877-69388896 | None:intergenic | 35.0% | |
| ! | TTCAAAGGCAAGTTTTTCTC+GGG | + | chr4_4:69388893-69388912 | Msa0698930:intron | 35.0% |
| ! | AAACCAGCAGACGATTATTT+TGG | + | chr4_4:69389171-69389190 | Msa0698930:intron | 35.0% |
| AGAGAATCAGAAGCAAGCAT+GGG | - | chr4_4:69388925-69388944 | None:intergenic | 40.0% | |
| GTGACAATTCGTAATCCTGT+TGG | - | chr4_4:69388987-69389006 | None:intergenic | 40.0% | |
| CAAGCTTATGATTTCCTCAC+TGG | + | chr4_4:69389011-69389030 | Msa0698930:CDS | 40.0% | |
| ! | CTTCAACTCTTTTTCCAGTG+AGG | - | chr4_4:69389028-69389047 | None:intergenic | 40.0% |
| CTCACTGGAAAAAGAGTTGA+AGG | + | chr4_4:69389026-69389045 | Msa0698930:CDS | 40.0% | |
| TACTCTGTCGATATTCAGCA+AGG | - | chr4_4:69389213-69389232 | None:intergenic | 40.0% | |
| AAGCAAAATCCAACGTACGC+CGG | + | chr4_4:69388819-69388838 | Msa0698930:CDS | 45.0% | |
| GATTTACTCCCCTTCCGATT+GGG | - | chr4_4:69388848-69388867 | None:intergenic | 45.0% | |
| AGGGGAGTAAATCCATTGTC+CGG | + | chr4_4:69388855-69388874 | Msa0698930:CDS | 45.0% | |
| ! | TCCATTGTCCGGAACTCTTT+TGG | + | chr4_4:69388866-69388885 | Msa0698930:CDS | 45.0% |
| CAGAGAATCAGAAGCAAGCA+TGG | - | chr4_4:69388926-69388945 | None:intergenic | 45.0% | |
| CCTCCAAAATAATCGTCTGC+TGG | - | chr4_4:69389177-69389196 | None:intergenic | 45.0% | |
| !!! | CCAGCAGACGATTATTTTGG+AGG | + | chr4_4:69389174-69389193 | Msa0698930:intron | 45.0% |
| CAGCCAAGGCAACTAAAGTT+CGG | + | chr4_4:69389251-69389270 | Msa0698930:CDS | 45.0% | |
| CTTCCGAACTTTAGTTGCCT+TGG | - | chr4_4:69389257-69389276 | None:intergenic | 45.0% | |
| GGATTTACTCCCCTTCCGAT+TGG | - | chr4_4:69388849-69388868 | None:intergenic | 50.0% | |
| GCCAAAAGAGTTCCGGACAA+TGG | - | chr4_4:69388870-69388889 | None:intergenic | 50.0% | |
| TCAGAAGCAAGCATGGGTAC+AGG | - | chr4_4:69388919-69388938 | None:intergenic | 50.0% | |
| GAGTAAAGCTGCTGCAAAGC+AGG | + | chr4_4:69389228-69389247 | Msa0698930:CDS | 50.0% | |
| ! | GCAGAAGGGGAAGAAAGTGT+TGG | + | chr4_4:69389324-69389343 | Msa0698930:CDS | 50.0% |
| GAAGGAGCCCAACATTCCTC+AGG | + | chr4_4:69389044-69389063 | Msa0698930:CDS | 55.0% | |
| ATTGGGTAGCCGGCGTACGT+TGG | - | chr4_4:69388831-69388850 | None:intergenic | 60.0% | |
| ! | ACGTACGCCGGCTACCCAAT+CGG | + | chr4_4:69388831-69388850 | Msa0698930:CDS | 60.0% |
| TCCCCTTCCGATTGGGTAGC+CGG | - | chr4_4:69388841-69388860 | None:intergenic | 60.0% | |
| TGCTGCAAAGCAGGCAGCCA+AGG | + | chr4_4:69389237-69389256 | Msa0698930:CDS | 60.0% | |
| ! | ACGCCGGCTACCCAATCGGA+AGG | + | chr4_4:69388835-69388854 | Msa0698930:CDS | 65.0% |
| ! | CGCCGGCTACCCAATCGGAA+GGG | + | chr4_4:69388836-69388855 | Msa0698930:CDS | 65.0% |
| GCCGGCTACCCAATCGGAAG+GGG | + | chr4_4:69388837-69388856 | Msa0698930:CDS | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_4 | gene | 69388801 | 69389354 | 69388801 | ID=Msa0698930;Name=Msa0698930 |
| chr4_4 | mRNA | 69388801 | 69389354 | 69388801 | ID=Msa0698930-mRNA-1;Parent=Msa0698930;Name=Msa0698930-mRNA-1;_AED=0.39;_eAED=0.42;_QI=0|0|0|1|1|1|3|0|122 |
| chr4_4 | exon | 69388801 | 69388899 | 69388801 | ID=Msa0698930-mRNA-1:exon:20805;Parent=Msa0698930-mRNA-1 |
| chr4_4 | exon | 69388991 | 69389083 | 69388991 | ID=Msa0698930-mRNA-1:exon:20806;Parent=Msa0698930-mRNA-1 |
| chr4_4 | exon | 69389178 | 69389354 | 69389178 | ID=Msa0698930-mRNA-1:exon:20807;Parent=Msa0698930-mRNA-1 |
| chr4_4 | CDS | 69388801 | 69388899 | 69388801 | ID=Msa0698930-mRNA-1:cds;Parent=Msa0698930-mRNA-1 |
| chr4_4 | CDS | 69388991 | 69389083 | 69388991 | ID=Msa0698930-mRNA-1:cds;Parent=Msa0698930-mRNA-1 |
| chr4_4 | CDS | 69389178 | 69389354 | 69389178 | ID=Msa0698930-mRNA-1:cds;Parent=Msa0698930-mRNA-1 |
| Gene Sequence |
| Protein sequence |
