Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0031710 | Msa1249280 | 0.801377 | 9.265402e-49 | -8.615850e-47 |
| Msa0036920 | Msa1249280 | 0.805844 | 1.096811e-49 | -8.615850e-47 |
| Msa0050380 | Msa1249280 | 0.802966 | 4.366185e-49 | -8.615850e-47 |
| Msa0688480 | Msa1249280 | 0.801515 | 8.680722e-49 | -8.615850e-47 |
| Msa0748730 | Msa1249280 | 0.800863 | 1.180209e-48 | -8.615850e-47 |
| Msa0130970 | Msa1249280 | 0.803251 | 3.810368e-49 | -8.615850e-47 |
| Msa0171760 | Msa1249280 | 0.814461 | 1.522922e-51 | -8.615850e-47 |
| Msa0198910 | Msa1249280 | 0.809450 | 1.881337e-50 | -8.615850e-47 |
| Msa1249280 | Msa1278110 | 0.804795 | 1.819815e-49 | -8.615850e-47 |
| Msa1249280 | Msa1411020 | 0.805230 | 1.475656e-49 | -8.615850e-47 |
| Msa1249280 | Msa1420820 | 0.810624 | 1.050901e-50 | -8.615850e-47 |
| Msa1249280 | Msa1439320 | 0.802531 | 5.367735e-49 | -8.615850e-47 |
| Msa0393620 | Msa1249280 | 0.808027 | 3.789435e-50 | -8.615850e-47 |
| Msa0426900 | Msa1249280 | 0.801270 | 9.744161e-49 | -8.615850e-47 |
| Msa0444750 | Msa1249280 | -0.808514 | 2.982987e-50 | -8.615850e-47 |
| Msa1031910 | Msa1249280 | 0.804037 | 2.617401e-49 | -8.615850e-47 |
| Msa1075080 | Msa1249280 | -0.800917 | 1.150761e-48 | -8.615850e-47 |
| Msa1098250 | Msa1249280 | 0.817684 | 2.902211e-52 | -8.615850e-47 |
| Msa0251640 | Msa1249280 | 0.824004 | 1.020800e-53 | -8.615850e-47 |
| Msa0319170 | Msa1249280 | 0.806682 | 7.307106e-50 | -8.615850e-47 |
| Msa1174040 | Msa1249280 | 0.805816 | 1.112053e-49 | -8.615850e-47 |
| Msa1209530 | Msa1249280 | 0.800388 | 1.475620e-48 | -8.615850e-47 |
| Msa1215920 | Msa1249280 | 0.804057 | 2.592577e-49 | -8.615850e-47 |
| Msa0490140 | Msa1249280 | 0.813105 | 3.029685e-51 | -8.615850e-47 |
| Msa0514320 | Msa1249280 | 0.806587 | 7.650357e-50 | -8.615850e-47 |
| Msa0545700 | Msa1249280 | 0.801031 | 1.090947e-48 | -8.615850e-47 |
| Msa0585230 | Msa1249280 | 0.809766 | 1.608691e-50 | -8.615850e-47 |
| Msa0935540 | Msa1249280 | 0.977186 | 2.798933e-143 | -8.615850e-47 |
| Msa0936300 | Msa1249280 | 0.813719 | 2.220185e-51 | -8.615850e-47 |
| Msa0948320 | Msa1249280 | 0.806146 | 9.475540e-50 | -8.615850e-47 |
| Msa0953120 | Msa1249280 | 0.814683 | 1.359735e-51 | -8.615850e-47 |
| Msa0969520 | Msa1249280 | 0.828123 | 1.070603e-54 | -8.615850e-47 |
| Msa0973100 | Msa1249280 | 0.809426 | 1.903230e-50 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 27 sgRNAs with CRISPR-Local
Find 190 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGGTTGCTTGTTCAGGTTTC+TGG | 0.041960 | 8_2:-43810760 | Msa1249280:intron |
| GTGCTTCCACTCTAGTGTTT+TGG | 0.305981 | 8_2:-43810716 | Msa1249280:three_prime_UTR |
| TCCAAAACGTGCTAAAACTA+AGG | 0.380850 | 8_2:-43811219 | Msa1249280:CDS |
| TTCAGTTCTGTTTGCAACAT+TGG | 0.395085 | 8_2:+43811256 | None:intergenic |
| GTCTGACAGTTGTTCAAGTC+TGG | 0.403785 | 8_2:-43810738 | Msa1249280:three_prime_UTR |
| TTTCTAGTACCTCTGGCTGC+TGG | 0.420914 | 8_2:-43810663 | None:intergenic |
| CAATCTGTTTCTAGTACCTC+TGG | 0.430598 | 8_2:-43810670 | Msa1249280:three_prime_UTR |
| TTAGGCATTGTGGGTCGAAA+TGG | 0.461615 | 8_2:-43810915 | Msa1249280:intron |
| ACTAAGGGGCGTGGTGGTGC+AGG | 0.465724 | 8_2:-43811203 | Msa1249280:CDS |
| TGTGGTAAATGTGGAATTGT+TGG | 0.474301 | 8_2:-43811143 | Msa1249280:CDS |
| AGGTACTAGAAACAGATTGC+AGG | 0.474598 | 8_2:+43810674 | None:intergenic |
| GAAATGGTGATGAGTGATAC+TGG | 0.513326 | 8_2:-43810899 | Msa1249280:three_prime_UTR |
| CACATTTACCACAATGTCCA+CGG | 0.523480 | 8_2:+43811153 | None:intergenic |
| CCAAAACGTGCTAAAACTAA+GGG | 0.532094 | 8_2:-43811218 | Msa1249280:CDS |
| AAGAGGCGCCGTGGACATTG+TGG | 0.583174 | 8_2:-43811161 | Msa1249280:CDS |
| GAAGCATGGCATACAATCTG+AGG | 0.592856 | 8_2:-43811285 | Msa1249280:exon |
| TGATGAGTGATACTGGTGTC+CGG | 0.598194 | 8_2:-43810892 | Msa1249280:three_prime_UTR |
| TAGCAGTGAAAATACCTCAC+AGG | 0.603589 | 8_2:-43813370 | Msa1249280:intron |
| CGTGCTAAAACTAAGGGGCG+TGG | 0.611324 | 8_2:-43811212 | Msa1249280:CDS |
| TAACGCGTAAAACAGTCGTC+CGG | 0.615641 | 8_2:+43810873 | None:intergenic |
| CGTGGACATTGTGGTAAATG+TGG | 0.643084 | 8_2:-43811152 | Msa1249280:CDS |
| CCAACGCCAAAACACTAGAG+TGG | 0.643604 | 8_2:+43810710 | None:intergenic |
| GCCACCAAACCAGCAGCCAG+AGG | 0.643731 | 8_2:+43810654 | None:intergenic |
| GCTAAAACTAAGGGGCGTGG+TGG | 0.677320 | 8_2:-43811209 | Msa1249280:CDS |
| GTGGTGCAGGAACTTCTAGA+CGG | 0.688641 | 8_2:-43811190 | Msa1249280:CDS |
| CAAAACGTGCTAAAACTAAG+GGG | 0.704545 | 8_2:-43811217 | Msa1249280:CDS |
| AGAAAGGCATGATACCTGTG+AGG | 0.736671 | 8_2:+43813356 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTAATTTTATATTCTATTTT+TGG | - | chr8_2:43810724-43810743 | Msa1249280:three_prime_UTR | 10.0% |
| !! | GAATATAAAATTACAAAGAA+AGG | + | chr8_2:43810718-43810737 | None:intergenic | 15.0% |
| !!! | CTTTTTTTTTTTTTCAGTTT+AGG | - | chr8_2:43813122-43813141 | Msa1249280:intron | 15.0% |
| !!! | TTCTATTTTTGGCTAATTTA+TGG | - | chr8_2:43810735-43810754 | Msa1249280:three_prime_UTR | 20.0% |
| !!! | TCTATTTTTGGCTAATTTAT+GGG | - | chr8_2:43810736-43810755 | Msa1249280:three_prime_UTR | 20.0% |
| !!! | ACTTTCTAAGATTTTTCATT+TGG | + | chr8_2:43811303-43811322 | None:intergenic | 20.0% |
| !! | CAAATAATGAATAATCCAAT+TGG | + | chr8_2:43811573-43811592 | None:intergenic | 20.0% |
| !! | CAATTGGATTATTCATTATT+TGG | - | chr8_2:43811571-43811590 | Msa1249280:intron | 20.0% |
| !! | GAATAATAAAAATATTGCCT+TGG | + | chr8_2:43812304-43812323 | None:intergenic | 20.0% |
| ! | TACAGACACTATATTACAAA+GGG | + | chr8_2:43810779-43810798 | None:intergenic | 25.0% |
| ! | ATACAGACACTATATTACAA+AGG | + | chr8_2:43810780-43810799 | None:intergenic | 25.0% |
| !!! | ATTTTGTTTGCATCAGTTTA+TGG | - | chr8_2:43810802-43810821 | Msa1249280:intron | 25.0% |
| ! | ATAGAAAGTGATATGAAAGT+TGG | - | chr8_2:43810836-43810855 | Msa1249280:intron | 25.0% |
| !! | TGGCTTATACATTTTACAAT+TGG | - | chr8_2:43810960-43810979 | Msa1249280:intron | 25.0% |
| !! | TGATTTTATTGGATTTCTTC+CGG | - | chr8_2:43811246-43811265 | Msa1249280:CDS | 25.0% |
| ! | ATGAAAAATCTTAGAAAGTC+TGG | - | chr8_2:43811304-43811323 | Msa1249280:intron | 25.0% |
| !!! | TTCATTATTTGGTGATGTTT+TGG | - | chr8_2:43811582-43811601 | Msa1249280:intron | 25.0% |
| ! | TAATCATCATAATCAAACAG+TGG | - | chr8_2:43811666-43811685 | Msa1249280:intron | 25.0% |
| !!! | TTGAAATAAAGTTTTGAACC+TGG | + | chr8_2:43811908-43811927 | None:intergenic | 25.0% |
| ! | CATAGAACATTTACGATTTA+AGG | - | chr8_2:43812188-43812207 | Msa1249280:intron | 25.0% |
| ! | ACAAACCCAATTTCATTATT+TGG | - | chr8_2:43812254-43812273 | Msa1249280:intron | 25.0% |
| ! | TCTCTCCAAATAATGAAATT+GGG | + | chr8_2:43812262-43812281 | None:intergenic | 25.0% |
| ! | ATCTCTCCAAATAATGAAAT+TGG | + | chr8_2:43812263-43812282 | None:intergenic | 25.0% |
| ! | TGTACATATAGTTTCTGTTA+TGG | - | chr8_2:43812506-43812525 | Msa1249280:intron | 25.0% |
| !!! | AAGCTTTAAATCAAAGATCA+AGG | - | chr8_2:43812661-43812680 | Msa1249280:intron | 25.0% |
| !!! | AGCTTTAAATCAAAGATCAA+GGG | - | chr8_2:43812662-43812681 | Msa1249280:intron | 25.0% |
| !!! | TCTTTTTAAGACTCTCATAA+TGG | + | chr8_2:43812752-43812771 | None:intergenic | 25.0% |
| !!! | TTATGTTTTGGTTTTTGTTG+TGG | - | chr8_2:43813275-43813294 | Msa1249280:intron | 25.0% |
| AGTGATATGAAAGTTGGATT+TGG | - | chr8_2:43810842-43810861 | Msa1249280:intron | 30.0% | |
| ATTGAAGGAATGGAAGATAT+AGG | - | chr8_2:43810872-43810891 | Msa1249280:three_prime_UTR | 30.0% | |
| TTGAAGGAATGGAAGATATA+GGG | - | chr8_2:43810873-43810892 | Msa1249280:three_prime_UTR | 30.0% | |
| ! | ATATTTGTTTGCTACAGACA+AGG | - | chr8_2:43811058-43811077 | Msa1249280:intron | 30.0% |
| CAATAAAATCATCATCGACA+AGG | + | chr8_2:43811237-43811256 | None:intergenic | 30.0% | |
| ! | CTTGTCGATGATGATTTTAT+TGG | - | chr8_2:43811235-43811254 | Msa1249280:CDS | 30.0% |
| ! | GATTTTATTGGATTTCTTCC+GGG | - | chr8_2:43811247-43811266 | Msa1249280:CDS | 30.0% |
| ATTAGAACTTCACAAGCTTA+TGG | - | chr8_2:43811328-43811347 | Msa1249280:intron | 30.0% | |
| !! | CATGTACAATGAAGTTGATA+AGG | - | chr8_2:43811405-43811424 | Msa1249280:intron | 30.0% |
| ATACGTATCTTCAACTTCAT+TGG | + | chr8_2:43811713-43811732 | None:intergenic | 30.0% | |
| AAGTTGAAGATACGTATGTA+TGG | - | chr8_2:43811716-43811735 | Msa1249280:intron | 30.0% | |
| TCGATCAATTTGAAAGAAGA+TGG | - | chr8_2:43811953-43811972 | Msa1249280:intron | 30.0% | |
| TGAAAGAAGATGGAATGAAA+TGG | - | chr8_2:43811963-43811982 | Msa1249280:intron | 30.0% | |
| TTCAAAACTGTATGAGAAGA+AGG | - | chr8_2:43812020-43812039 | Msa1249280:intron | 30.0% | |
| GTTTGAATTCACAAATTGGA+AGG | - | chr8_2:43812112-43812131 | Msa1249280:intron | 30.0% | |
| TAAAACTCTATCACCATGTA+GGG | + | chr8_2:43812235-43812254 | None:intergenic | 30.0% | |
| !! | AAGCTTTTTGAAGAACAGTA+CGG | + | chr8_2:43812326-43812345 | None:intergenic | 30.0% |
| GTGACTAAATATTGTAGACA+AGG | - | chr8_2:43812399-43812418 | Msa1249280:intron | 30.0% | |
| ACAGAAACTATATGTACACA+AGG | + | chr8_2:43812504-43812523 | None:intergenic | 30.0% | |
| TGTTATGGTACATTTGAACA+TGG | - | chr8_2:43812521-43812540 | Msa1249280:intron | 30.0% | |
| ! | ACAGCGTTGAAAAAAGTAAA+TGG | - | chr8_2:43812954-43812973 | Msa1249280:intron | 30.0% |
| ! | ACTCTGAAGATGATGAATAA+AGG | - | chr8_2:43813030-43813049 | Msa1249280:intron | 30.0% |
| !!! | TTTTTTCAGTTTAGGCATTG+TGG | - | chr8_2:43813130-43813149 | Msa1249280:intron | 30.0% |
| !! | TTTTTCAGTTTAGGCATTGT+GGG | - | chr8_2:43813131-43813150 | Msa1249280:intron | 30.0% |
| TTGCATCAGTTTATGGAGTT+TGG | - | chr8_2:43810809-43810828 | Msa1249280:intron | 35.0% | |
| !! | GGATTTGGATTTGCTATTGA+AGG | - | chr8_2:43810857-43810876 | Msa1249280:intron | 35.0% |
| !! | TGGATTTGCTATTGAAGGAA+TGG | - | chr8_2:43810862-43810881 | Msa1249280:three_prime_UTR | 35.0% |
| !! | TCATTTTGCAAGTATTGCAG+TGG | - | chr8_2:43810940-43810959 | Msa1249280:intron | 35.0% |
| AATTGGTATGCTCGAATGAA+TGG | - | chr8_2:43810977-43810996 | Msa1249280:intron | 35.0% | |
| ATCAATGTGCACACTACATT+TGG | + | chr8_2:43811161-43811180 | None:intergenic | 35.0% | |
| TAGTCAACGTTGGTATGTAT+GGG | - | chr8_2:43811186-43811205 | Msa1249280:CDS | 35.0% | |
| ! | GCACTTTTGCTAATCACTAT+GGG | - | chr8_2:43811350-43811369 | Msa1249280:intron | 35.0% |
| ! | CACTTTTGCTAATCACTATG+GGG | - | chr8_2:43811351-43811370 | Msa1249280:intron | 35.0% |
| ! | ACTTTTGCTAATCACTATGG+GGG | - | chr8_2:43811352-43811371 | Msa1249280:intron | 35.0% |
| GATAAGGATAGACGAAGTAA+AGG | - | chr8_2:43811421-43811440 | Msa1249280:intron | 35.0% | |
| !! | ATGATCCAGCAATGTTTTTG+AGG | - | chr8_2:43811491-43811510 | Msa1249280:intron | 35.0% |
| GTATTCCTCAAAAACATTGC+TGG | + | chr8_2:43811499-43811518 | None:intergenic | 35.0% | |
| !! | AGGAATACAGTTGATGAAGA+AGG | - | chr8_2:43811511-43811530 | Msa1249280:intron | 35.0% |
| !! | ATACAGTTGATGAAGAAGGA+AGG | - | chr8_2:43811515-43811534 | Msa1249280:intron | 35.0% |
| ATGGTTGCTTGATCAATTTG+TGG | - | chr8_2:43811735-43811754 | Msa1249280:intron | 35.0% | |
| CAATTTGTGGAGGTAATGAA+AGG | - | chr8_2:43811748-43811767 | Msa1249280:intron | 35.0% | |
| TTAGCAATGAGGAAAGCAAT+TGG | - | chr8_2:43811805-43811824 | Msa1249280:intron | 35.0% | |
| ! | GCAATTGGAAGAATTTTTCC+TGG | - | chr8_2:43811820-43811839 | Msa1249280:intron | 35.0% |
| AATGAAATGGTGAAAGAGTG+TGG | - | chr8_2:43811976-43811995 | Msa1249280:intron | 35.0% | |
| ! | TGGTGTCGAAGATAATGTTT+GGG | - | chr8_2:43811996-43812015 | Msa1249280:intron | 35.0% |
| TGTATGAGAAGAAGGATATG+TGG | - | chr8_2:43812028-43812047 | Msa1249280:intron | 35.0% | |
| GTATGAGAAGAAGGATATGT+GGG | - | chr8_2:43812029-43812048 | Msa1249280:intron | 35.0% | |
| ! | CACATACGAGGTAAGTTTTT+CGG | - | chr8_2:43812060-43812079 | Msa1249280:intron | 35.0% |
| !! | GTAAGTTTTTCGGTGGTTTT+AGG | - | chr8_2:43812070-43812089 | Msa1249280:intron | 35.0% |
| GAGGGTTTGAATTCACAAAT+TGG | - | chr8_2:43812108-43812127 | Msa1249280:intron | 35.0% | |
| ! | TTTACGATTTAAGGAGCATG+AGG | - | chr8_2:43812197-43812216 | Msa1249280:intron | 35.0% |
| GTAAAACTCTATCACCATGT+AGG | + | chr8_2:43812236-43812255 | None:intergenic | 35.0% | |
| ATTGTAGACAAGGAAGTGAA+TGG | - | chr8_2:43812409-43812428 | Msa1249280:intron | 35.0% | |
| GTGAATGGAATGTTTCTTAC+TGG | - | chr8_2:43812424-43812443 | Msa1249280:intron | 35.0% | |
| ! | CATTTGATTTCCATACTCGA+TGG | + | chr8_2:43812450-43812469 | None:intergenic | 35.0% |
| TAGATGGTCAAAAAATGCCA+AGG | - | chr8_2:43812572-43812591 | Msa1249280:intron | 35.0% | |
| GAGAGTCTTAAAAAGAAGCA+TGG | - | chr8_2:43812756-43812775 | Msa1249280:intron | 35.0% | |
| TTCAGTTCTGTTTGCAACAT+TGG | + | chr8_2:43812802-43812821 | None:intergenic | 35.0% | |
| TCCAAAACGTGCTAAAACTA+AGG | - | chr8_2:43812836-43812855 | Msa1249280:intron | 35.0% | |
| CCAAAACGTGCTAAAACTAA+GGG | - | chr8_2:43812837-43812856 | Msa1249280:intron | 35.0% | |
| CAAAACGTGCTAAAACTAAG+GGG | - | chr8_2:43812838-43812857 | Msa1249280:intron | 35.0% | |
| CTTCTAGACGGAAAAATAAG+AGG | - | chr8_2:43812877-43812896 | Msa1249280:intron | 35.0% | |
| TGTGGTAAATGTGGAATTGT+TGG | - | chr8_2:43812912-43812931 | Msa1249280:intron | 35.0% | |
| GTCATGTATCTGATGAAGAT+TGG | - | chr8_2:43813006-43813025 | Msa1249280:intron | 35.0% | |
| ! | GCAAGTGATCTGTTATGTTT+TGG | - | chr8_2:43813263-43813282 | Msa1249280:intron | 35.0% |
| TAGCAGTGAAAATACCTCAC+AGG | - | chr8_2:43810685-43810704 | Msa1249280:three_prime_UTR | 40.0% | |
| !! | TGTAGTGTGCACATTGATTC+TGG | - | chr8_2:43811163-43811182 | Msa1249280:CDS | 40.0% |
| TTGATTCTGGTAGTCAACGT+TGG | - | chr8_2:43811176-43811195 | Msa1249280:CDS | 40.0% | |
| GTAGTCAACGTTGGTATGTA+TGG | - | chr8_2:43811185-43811204 | Msa1249280:CDS | 40.0% | |
| ! | GGCACTTTTGCTAATCACTA+TGG | - | chr8_2:43811349-43811368 | Msa1249280:intron | 40.0% |
| !! | TAGTGATTCTAGAGCTGCTT+TGG | - | chr8_2:43811444-43811463 | Msa1249280:intron | 40.0% |
| GAAGGCTTGAACATTTGTTC+TGG | - | chr8_2:43811533-43811552 | Msa1249280:intron | 40.0% | |
| !! | GAACATTTGTTCTGGAGTGA+TGG | - | chr8_2:43811541-43811560 | Msa1249280:intron | 40.0% |
| !! | ATTTGTTCTGGAGTGATGGT+AGG | - | chr8_2:43811545-43811564 | Msa1249280:intron | 40.0% |
| !!! | AGCCCACTTGTTGTATTTTC+AGG | - | chr8_2:43811640-43811659 | Msa1249280:intron | 40.0% |
| !!! | GCCCACTTGTTGTATTTTCA+GGG | - | chr8_2:43811641-43811660 | Msa1249280:intron | 40.0% |
| CCCCTGAAAATACAACAAGT+GGG | + | chr8_2:43811645-43811664 | None:intergenic | 40.0% | |
| !!! | CCCACTTGTTGTATTTTCAG+GGG | - | chr8_2:43811642-43811661 | Msa1249280:intron | 40.0% |
| ACCCCTGAAAATACAACAAG+TGG | + | chr8_2:43811646-43811665 | None:intergenic | 40.0% | |
| GTTGCTTGATCAATTTGTGG+AGG | - | chr8_2:43811738-43811757 | Msa1249280:intron | 40.0% | |
| !! | CCATCGGTTATCACAGATTT+TGG | + | chr8_2:43811781-43811800 | None:intergenic | 40.0% |
| CCAAAATCTGTGATAACCGA+TGG | - | chr8_2:43811778-43811797 | Msa1249280:intron | 40.0% | |
| ! | GTGGTGTCGAAGATAATGTT+TGG | - | chr8_2:43811995-43812014 | Msa1249280:intron | 40.0% |
| !! | ATACGAGGTAAGTTTTTCGG+TGG | - | chr8_2:43812063-43812082 | Msa1249280:intron | 40.0% |
| TTTGGAGAGATATGCCTCAA+AGG | - | chr8_2:43812272-43812291 | Msa1249280:intron | 40.0% | |
| TGCCTTCGAATGGAATCAAT+GGG | - | chr8_2:43812474-43812493 | Msa1249280:intron | 40.0% | |
| !! | TACCCATTGATTCCATTCGA+AGG | + | chr8_2:43812479-43812498 | None:intergenic | 40.0% |
| GGTTGAAATACCATCGTGTT+TGG | - | chr8_2:43812542-43812561 | Msa1249280:intron | 40.0% | |
| CTATCAAGAACCAAACACGA+TGG | + | chr8_2:43812555-43812574 | None:intergenic | 40.0% | |
| !! | CGTGTTTGGTTCTTGATAGA+TGG | - | chr8_2:43812556-43812575 | Msa1249280:intron | 40.0% |
| !! | TCAAAAGTATCACAGTGCAC+TGG | - | chr8_2:43812609-43812628 | Msa1249280:intron | 40.0% |
| CAAAGATCAAGGGATGTGAA+TGG | - | chr8_2:43812672-43812691 | Msa1249280:intron | 40.0% | |
| ATCAAGGGATGTGAATGGTT+TGG | - | chr8_2:43812677-43812696 | Msa1249280:intron | 40.0% | |
| !!! | CCCTTAGTTTTAGCACGTTT+TGG | + | chr8_2:43812840-43812859 | None:intergenic | 40.0% |
| CACATTTACCACAATGTCCA+CGG | + | chr8_2:43812905-43812924 | None:intergenic | 40.0% | |
| ! | GAAATGGTGATGAGTGATAC+TGG | - | chr8_2:43813156-43813175 | Msa1249280:intron | 40.0% |
| ! | ACGACTGTTTTACGCGTTAA+TGG | - | chr8_2:43813186-43813205 | Msa1249280:intron | 40.0% |
| ! | TGTTTTACGCGTTAATGGTC+TGG | - | chr8_2:43813191-43813210 | Msa1249280:intron | 40.0% |
| !! | GTCTGGAAGTGTGCATTTTT+CGG | - | chr8_2:43813208-43813227 | Msa1249280:intron | 40.0% |
| ! | TTTGTTGTGGTTGCTTGTTC+AGG | - | chr8_2:43813288-43813307 | Msa1249280:intron | 40.0% |
| AGGTACTAGAAACAGATTGC+AGG | + | chr8_2:43813384-43813403 | None:intergenic | 40.0% | |
| !! | CAATCTGTTTCTAGTACCTC+TGG | - | chr8_2:43813385-43813404 | Msa1249280:five_prime_UTR | 40.0% |
| ! | AGAAAGGCATGATACCTGTG+AGG | + | chr8_2:43810702-43810721 | None:intergenic | 45.0% |
| CTGCTCGTAGAAGCAAAGTA+AGG | - | chr8_2:43811005-43811024 | Msa1249280:intron | 45.0% | |
| CAATAAAATCCGTAAGCGCG+AGG | - | chr8_2:43811105-43811124 | Msa1249280:exon | 45.0% | |
| CATCGACAAGGCTATGATTG+TGG | + | chr8_2:43811225-43811244 | None:intergenic | 45.0% | |
| CCTCATTGCTAAGTCTCCAT+CGG | + | chr8_2:43811797-43811816 | None:intergenic | 45.0% | |
| CCAAGCACATAACCTATGGT+GGG | + | chr8_2:43811848-43811867 | None:intergenic | 45.0% | |
| TATGTGCTTGGCACCTTACA+CGG | - | chr8_2:43811857-43811876 | Msa1249280:intron | 45.0% | |
| GAACCTGGTGTTCTTGACAT+TGG | + | chr8_2:43811893-43811912 | None:intergenic | 45.0% | |
| ! | GAAGAAGGATATGTGGGCTA+CGG | - | chr8_2:43812035-43812054 | Msa1249280:intron | 45.0% |
| TAGGACTACTTCTCGTTGTG+AGG | - | chr8_2:43812089-43812108 | Msa1249280:intron | 45.0% | |
| AGGACTACTTCTCGTTGTGA+GGG | - | chr8_2:43812090-43812109 | Msa1249280:intron | 45.0% | |
| ! | TGCCTCAAAGGTGTATACCA+AGG | - | chr8_2:43812284-43812303 | Msa1249280:intron | 45.0% |
| TGCCTTGGTATACACCTTTG+AGG | + | chr8_2:43812289-43812308 | None:intergenic | 45.0% | |
| TTCTTACTGGCCATCGAGTA+TGG | - | chr8_2:43812437-43812456 | Msa1249280:intron | 45.0% | |
| CAAATGTTCCTGCCTTCGAA+TGG | - | chr8_2:43812464-43812483 | Msa1249280:intron | 45.0% | |
| !! | CATTGATTCCATTCGAAGGC+AGG | + | chr8_2:43812475-43812494 | None:intergenic | 45.0% |
| CTGCCTTCGAATGGAATCAA+TGG | - | chr8_2:43812473-43812492 | Msa1249280:intron | 45.0% | |
| AATGCCAAGGACTCGATAAG+TGG | - | chr8_2:43812585-43812604 | Msa1249280:intron | 45.0% | |
| TGAACCACTTATCGAGTCCT+TGG | + | chr8_2:43812592-43812611 | None:intergenic | 45.0% | |
| ! | AAGTATCACAGTGCACTGGT+TGG | - | chr8_2:43812613-43812632 | Msa1249280:intron | 45.0% |
| !! | AGTATCACAGTGCACTGGTT+GGG | - | chr8_2:43812614-43812633 | Msa1249280:intron | 45.0% |
| CAAGTCTGCGGAAGATTATC+TGG | - | chr8_2:43812704-43812723 | Msa1249280:intron | 45.0% | |
| GAAGCATGGCATACAATCTG+AGG | - | chr8_2:43812770-43812789 | Msa1249280:intron | 45.0% | |
| CGTGGACATTGTGGTAAATG+TGG | - | chr8_2:43812903-43812922 | Msa1249280:intron | 45.0% | |
| ! | TTAGGCATTGTGGGTCGAAA+TGG | - | chr8_2:43813140-43813159 | Msa1249280:intron | 45.0% |
| TGATGAGTGATACTGGTGTC+CGG | - | chr8_2:43813163-43813182 | Msa1249280:intron | 45.0% | |
| TAACGCGTAAAACAGTCGTC+CGG | + | chr8_2:43813185-43813204 | None:intergenic | 45.0% | |
| ! | TGGTTGCTTGTTCAGGTTTC+TGG | - | chr8_2:43813295-43813314 | Msa1249280:intron | 45.0% |
| GTCTGACAGTTGTTCAAGTC+TGG | - | chr8_2:43813317-43813336 | Msa1249280:intron | 45.0% | |
| ! | GTGCTTCCACTCTAGTGTTT+TGG | - | chr8_2:43813339-43813358 | Msa1249280:intron | 45.0% |
| GCAAGAGCTAACACTAGGTG+CGG | - | chr8_2:43811127-43811146 | Msa1249280:CDS | 50.0% | |
| TTGGATTTCTTCCGGGTCAC+AGG | - | chr8_2:43811254-43811273 | Msa1249280:CDS | 50.0% | |
| TGGATTTCTTCCGGGTCACA+GGG | - | chr8_2:43811255-43811274 | Msa1249280:CDS | 50.0% | |
| GAGTGATGGTAGGAGCCAAT+TGG | - | chr8_2:43811555-43811574 | Msa1249280:intron | 50.0% | |
| CCGATGGAGACTTAGCAATG+AGG | - | chr8_2:43811794-43811813 | Msa1249280:intron | 50.0% | |
| ! | TTTTTCCTGGTGCCCACCAT+AGG | - | chr8_2:43811833-43811852 | Msa1249280:intron | 50.0% |
| CCCACCATAGGTTATGTGCT+TGG | - | chr8_2:43811845-43811864 | Msa1249280:intron | 50.0% | |
| GCCAAGCACATAACCTATGG+TGG | + | chr8_2:43811849-43811868 | None:intergenic | 50.0% | |
| GGTGCCAAGCACATAACCTA+TGG | + | chr8_2:43811852-43811871 | None:intergenic | 50.0% | |
| CGTCCAATGTCAAGAACACC+AGG | - | chr8_2:43811887-43811906 | Msa1249280:intron | 50.0% | |
| !! | GCTGATTTTGCGTCCCTACA+TGG | - | chr8_2:43812219-43812238 | Msa1249280:intron | 50.0% |
| AGCTTCTGCTGTCACAGTGA+AGG | - | chr8_2:43812341-43812360 | Msa1249280:intron | 50.0% | |
| ! | TGGTTTGGCATGCAAGTCTG+CGG | - | chr8_2:43812692-43812711 | Msa1249280:intron | 50.0% |
| GTGGTGCAGGAACTTCTAGA+CGG | - | chr8_2:43812865-43812884 | Msa1249280:intron | 50.0% | |
| CCAACGCCAAAACACTAGAG+TGG | + | chr8_2:43813348-43813367 | None:intergenic | 50.0% | |
| !!! | CCACTCTAGTGTTTTGGCGT+TGG | - | chr8_2:43813345-43813364 | Msa1249280:intron | 50.0% |
| TAGCTCTTGCCTCGCGCTTA+CGG | + | chr8_2:43811117-43811136 | None:intergenic | 55.0% | |
| GCGAGGCAAGAGCTAACACT+AGG | - | chr8_2:43811122-43811141 | Msa1249280:CDS | 55.0% | |
| GGATTTCTTCCGGGTCACAG+GGG | - | chr8_2:43811256-43811275 | Msa1249280:CDS | 55.0% | |
| GATTTCTTCCGGGTCACAGG+GGG | - | chr8_2:43811257-43811276 | Msa1249280:CDS | 55.0% | |
| !! | CATAACCTATGGTGGGCACC+AGG | + | chr8_2:43811841-43811860 | None:intergenic | 55.0% |
| TGGACGTTGCGTTCCGTGTA+AGG | + | chr8_2:43811873-43811892 | None:intergenic | 55.0% | |
| CGTGCTAAAACTAAGGGGCG+TGG | - | chr8_2:43812843-43812862 | Msa1249280:intron | 55.0% | |
| ! | GCTAAAACTAAGGGGCGTGG+TGG | - | chr8_2:43812846-43812865 | Msa1249280:intron | 55.0% |
| !! | CGGAAAAATAAGAGGCGCCG+TGG | - | chr8_2:43812885-43812904 | Msa1249280:intron | 55.0% |
| TCATCCATCCCCCTGTGACC+CGG | + | chr8_2:43811268-43811287 | None:intergenic | 60.0% | |
| TGGGCTACGGCACACATACG+AGG | - | chr8_2:43812048-43812067 | Msa1249280:intron | 60.0% | |
| !! | AAGAGGCGCCGTGGACATTG+TGG | - | chr8_2:43812894-43812913 | Msa1249280:intron | 60.0% |
| TCTTCCGGGTCACAGGGGGA+TGG | - | chr8_2:43811261-43811280 | Msa1249280:CDS | 65.0% | |
| ! | ACTAAGGGGCGTGGTGGTGC+AGG | - | chr8_2:43812852-43812871 | Msa1249280:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr8_2 | gene | 43810664 | 43813413 | 43810664 | ID=Msa1249280;Name=Msa1249280 |
| chr8_2 | mRNA | 43810664 | 43813413 | 43810664 | ID=Msa1249280-mRNA-1;Parent=Msa1249280;Name=Msa1249280-mRNA-1;_AED=0.50;_eAED=0.70;_QI=47|0|0|0.75|0.33|0.25|4|223|62 |
| chr8_2 | exon | 43813371 | 43813413 | 43813371 | ID=Msa1249280-mRNA-1:exon:13356;Parent=Msa1249280-mRNA-1 |
| chr8_2 | exon | 43811067 | 43811306 | 43811067 | ID=Msa1249280-mRNA-1:exon:13355;Parent=Msa1249280-mRNA-1 |
| chr8_2 | exon | 43810862 | 43810933 | 43810862 | ID=Msa1249280-mRNA-1:exon:13354;Parent=Msa1249280-mRNA-1 |
| chr8_2 | exon | 43810664 | 43810767 | 43810664 | ID=Msa1249280-mRNA-1:exon:13353;Parent=Msa1249280-mRNA-1 |
| chr8_2 | five_prime_UTR | 43813371 | 43813413 | 43813371 | ID=Msa1249280-mRNA-1:five_prime_utr;Parent=Msa1249280-mRNA-1 |
| chr8_2 | five_prime_UTR | 43811303 | 43811306 | 43811303 | ID=Msa1249280-mRNA-1:five_prime_utr;Parent=Msa1249280-mRNA-1 |
| chr8_2 | CDS | 43811114 | 43811302 | 43811114 | ID=Msa1249280-mRNA-1:cds;Parent=Msa1249280-mRNA-1 |
| chr8_2 | three_prime_UTR | 43811067 | 43811113 | 43811067 | ID=Msa1249280-mRNA-1:three_prime_utr;Parent=Msa1249280-mRNA-1 |
| chr8_2 | three_prime_UTR | 43810862 | 43810933 | 43810862 | ID=Msa1249280-mRNA-1:three_prime_utr;Parent=Msa1249280-mRNA-1 |
| chr8_2 | three_prime_UTR | 43810664 | 43810767 | 43810664 | ID=Msa1249280-mRNA-1:three_prime_utr;Parent=Msa1249280-mRNA-1 |
| Gene Sequence |
| Protein sequence |
