Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853440 | AGQ42776.1 | 99.696 | 329 | 1 | 0 | 1 | 329 | 1 | 329 | 0.0 | 689 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853440 | sp|O03376|AOX3_SOYBN | 83.939 | 330 | 48 | 4 | 1 | 329 | 1 | 326 | 0.0 | 578 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853440 | S5FR94 | 99.696 | 329 | 1 | 0 | 1 | 329 | 1 | 329 | 0.0 | 689 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0001830 | Msa0853440 | 0.818729 | 1.683517e-52 | -8.615850e-47 |
| Msa0007470 | Msa0853440 | 0.840718 | 7.344293e-58 | -8.615850e-47 |
| Msa0010800 | Msa0853440 | 0.809872 | 1.526574e-50 | -8.615850e-47 |
| Msa0012710 | Msa0853440 | 0.802516 | 5.405483e-49 | -8.615850e-47 |
| Msa0015090 | Msa0853440 | 0.817349 | 3.452710e-52 | -8.615850e-47 |
| Msa0017320 | Msa0853440 | 0.841191 | 5.518923e-58 | -8.615850e-47 |
| Msa0049750 | Msa0853440 | 0.810422 | 1.161652e-50 | -8.615850e-47 |
| Msa0049910 | Msa0853440 | 0.822973 | 1.778061e-53 | -8.615850e-47 |
| Msa0055640 | Msa0853440 | 0.812302 | 4.538949e-51 | -8.615850e-47 |
| Msa0056060 | Msa0853440 | 0.822726 | 2.030819e-53 | -8.615850e-47 |
| Msa0060070 | Msa0853440 | 0.831194 | 1.916846e-55 | -8.615850e-47 |
| Msa0090970 | Msa0853440 | 0.814385 | 1.582546e-51 | -8.615850e-47 |
| Msa0111080 | Msa0853440 | 0.827299 | 1.688798e-54 | -8.615850e-47 |
| Msa0119440 | Msa0853440 | 0.824194 | 9.213150e-54 | -8.615850e-47 |
| Msa0631320 | Msa0853440 | 0.842143 | 3.096108e-58 | -8.615850e-47 |
| Msa0654620 | Msa0853440 | 0.802868 | 4.573842e-49 | -8.615850e-47 |
| Msa0657120 | Msa0853440 | 0.825386 | 4.822735e-54 | -8.615850e-47 |
| Msa0658680 | Msa0853440 | 0.813891 | 2.034877e-51 | -8.615850e-47 |
| Msa0659790 | Msa0853440 | 0.829591 | 4.725121e-55 | -8.615850e-47 |
| Msa0679810 | Msa0853440 | 0.809379 | 1.948605e-50 | -8.615850e-47 |
| Msa0692650 | Msa0853440 | 0.808431 | 3.107824e-50 | -8.615850e-47 |
| Msa0701100 | Msa0853440 | 0.825068 | 5.733911e-54 | -8.615850e-47 |
| Msa0724370 | Msa0853440 | 0.845507 | 3.889043e-59 | -8.615850e-47 |
| Msa0742150 | Msa0853440 | 0.817490 | 3.209578e-52 | -8.615850e-47 |
| Msa0746170 | Msa0853440 | 0.801223 | 9.962515e-49 | -8.615850e-47 |
| Msa0764920 | Msa0853440 | 0.852619 | 4.100062e-61 | -8.615850e-47 |
| Msa0769720 | Msa0853440 | 0.817353 | 3.446803e-52 | -8.615850e-47 |
| Msa0775560 | Msa0853440 | 0.943211 | 1.810446e-102 | -8.615850e-47 |
| Msa0786070 | Msa0853440 | 0.824332 | 8.549645e-54 | -8.615850e-47 |
| Msa0805920 | Msa0853440 | 0.812239 | 4.684606e-51 | -8.615850e-47 |
| Msa0812950 | Msa0853440 | 0.919146 | 6.480863e-87 | -8.615850e-47 |
| Msa0126880 | Msa0853440 | 0.804562 | 2.035703e-49 | -8.615850e-47 |
| Msa0129690 | Msa0853440 | 0.812300 | 4.543324e-51 | -8.615850e-47 |
| Msa0136630 | Msa0853440 | 0.828593 | 8.248666e-55 | -8.615850e-47 |
| Msa0138900 | Msa0853440 | 0.811953 | 5.408519e-51 | -8.615850e-47 |
| Msa0142280 | Msa0853440 | 0.801087 | 1.062474e-48 | -8.615850e-47 |
| Msa0142500 | Msa0853440 | 0.817582 | 3.060331e-52 | -8.615850e-47 |
| Msa0151220 | Msa0853440 | 0.806235 | 9.076731e-50 | -8.615850e-47 |
| Msa0152560 | Msa0853440 | 0.823009 | 1.744100e-53 | -8.615850e-47 |
| Msa0154920 | Msa0853440 | 0.816511 | 5.325744e-52 | -8.615850e-47 |
| Msa0171980 | Msa0853440 | 0.810381 | 1.185958e-50 | -8.615850e-47 |
| Msa0176260 | Msa0853440 | 0.813885 | 2.040336e-51 | -8.615850e-47 |
| Msa0187490 | Msa0853440 | 0.819094 | 1.391349e-52 | -8.615850e-47 |
| Msa0189030 | Msa0853440 | 0.812480 | 4.151532e-51 | -8.615850e-47 |
| Msa0189610 | Msa0853440 | 0.806068 | 9.840667e-50 | -8.615850e-47 |
| Msa0196670 | Msa0853440 | 0.812648 | 3.814976e-51 | -8.615850e-47 |
| Msa0196880 | Msa0853440 | 0.808491 | 3.017972e-50 | -8.615850e-47 |
| Msa0213430 | Msa0853440 | 0.804816 | 1.801397e-49 | -8.615850e-47 |
| Msa0227360 | Msa0853440 | 0.812216 | 4.739074e-51 | -8.615850e-47 |
| Msa0364790 | Msa0853440 | 0.865167 | 7.188072e-65 | -8.615850e-47 |
| Msa0365950 | Msa0853440 | 0.808650 | 2.790859e-50 | -8.615850e-47 |
| Msa0378010 | Msa0853440 | 0.830997 | 2.141878e-55 | -8.615850e-47 |
| Msa0380600 | Msa0853440 | 0.819837 | 9.416111e-53 | -8.615850e-47 |
| Msa0388730 | Msa0853440 | 0.800862 | 1.181163e-48 | -8.615850e-47 |
| Msa0403490 | Msa0853440 | 0.821498 | 3.910630e-53 | -8.615850e-47 |
| Msa0412260 | Msa0853440 | 0.811964 | 5.378579e-51 | -8.615850e-47 |
| Msa0413870 | Msa0853440 | 0.802498 | 5.453692e-49 | -8.615850e-47 |
| Msa0418400 | Msa0853440 | 0.810912 | 9.104238e-51 | -8.615850e-47 |
| Msa0427580 | Msa0853440 | 0.846228 | 2.478515e-59 | -8.615850e-47 |
| Msa0430240 | Msa0853440 | 0.818842 | 1.587026e-52 | -8.615850e-47 |
| Msa0448610 | Msa0853440 | 0.817452 | 3.273288e-52 | -8.615850e-47 |
| Msa0456770 | Msa0853440 | 0.857783 | 1.289923e-62 | -8.615850e-47 |
| Msa0472710 | Msa0853440 | 0.806008 | 1.013514e-49 | -8.615850e-47 |
| Msa0472770 | Msa0853440 | 0.800169 | 1.634506e-48 | -8.615850e-47 |
| Msa0240270 | Msa0853440 | 0.817454 | 3.269691e-52 | -8.615850e-47 |
| Msa0262370 | Msa0853440 | 0.800030 | 1.744543e-48 | -8.615850e-47 |
| Msa0264680 | Msa0853440 | 0.806861 | 6.696132e-50 | -8.615850e-47 |
| Msa0276100 | Msa0853440 | 0.807243 | 5.560389e-50 | -8.615850e-47 |
| Msa0276430 | Msa0853440 | 0.827592 | 1.437029e-54 | -8.615850e-47 |
| Msa0284450 | Msa0853440 | 0.804308 | 2.299373e-49 | -8.615850e-47 |
| Msa0302730 | Msa0853440 | 0.837721 | 4.398880e-57 | -8.615850e-47 |
| Msa0302840 | Msa0853440 | 0.819144 | 1.355014e-52 | -8.615850e-47 |
| Msa0305620 | Msa0853440 | 0.807531 | 4.830722e-50 | -8.615850e-47 |
| Msa0309270 | Msa0853440 | 0.807330 | 5.327488e-50 | -8.615850e-47 |
| Msa0316470 | Msa0853440 | 0.805591 | 1.240052e-49 | -8.615850e-47 |
| Msa0319290 | Msa0853440 | 0.803982 | 2.687764e-49 | -8.615850e-47 |
| Msa0331020 | Msa0853440 | 0.805276 | 1.443269e-49 | -8.615850e-47 |
| Msa0347750 | Msa0853440 | 0.806206 | 9.205665e-50 | -8.615850e-47 |
| Msa0358110 | Msa0853440 | 0.801035 | 1.088717e-48 | -8.615850e-47 |
| Msa0496970 | Msa0853440 | 0.821565 | 3.773704e-53 | -8.615850e-47 |
| Msa0500400 | Msa0853440 | 0.800774 | 1.230755e-48 | -8.615850e-47 |
| Msa0518170 | Msa0853440 | 0.854984 | 8.550323e-62 | -8.615850e-47 |
| Msa0534870 | Msa0853440 | 0.833956 | 3.957540e-56 | -8.615850e-47 |
| Msa0545290 | Msa0853440 | 0.807045 | 6.123639e-50 | -8.615850e-47 |
| Msa0566350 | Msa0853440 | 0.808290 | 3.330693e-50 | -8.615850e-47 |
| Msa0566750 | Msa0853440 | 0.802381 | 5.765099e-49 | -8.615850e-47 |
| Msa0569780 | Msa0853440 | 0.819022 | 1.444363e-52 | -8.615850e-47 |
| Msa0584580 | Msa0853440 | 0.804265 | 2.346812e-49 | -8.615850e-47 |
| Msa0584600 | Msa0853440 | 0.801407 | 9.137743e-49 | -8.615850e-47 |
| Msa0600890 | Msa0853440 | 0.810235 | 1.274731e-50 | -8.615850e-47 |
| Msa0844610 | Msa0853440 | 0.847146 | 1.390944e-59 | -8.615850e-47 |
| Msa0853440 | Msa0862280 | 0.814936 | 1.194948e-51 | -8.615850e-47 |
| Msa0853440 | Msa0877710 | 0.806350 | 8.584836e-50 | -8.615850e-47 |
| Msa0853440 | Msa0882400 | 0.848186 | 7.194284e-60 | -8.615850e-47 |
| Msa0853440 | Msa0947480 | 0.852389 | 4.765644e-61 | -8.615850e-47 |
| Msa0853440 | Msa0970480 | 0.820022 | 8.543593e-53 | -8.615850e-47 |
| Msa0853440 | Msa0994370 | 0.813207 | 2.876235e-51 | -8.615850e-47 |
| Msa0853440 | Msa1006730 | 0.805297 | 1.428894e-49 | -8.615850e-47 |
| Msa0853440 | Msa1013070 | 0.845375 | 4.224951e-59 | -8.615850e-47 |
| Msa0853440 | Msa1023300 | 0.842919 | 1.927237e-58 | -8.615850e-47 |
| Msa0853440 | Msa1023310 | 0.864404 | 1.245631e-64 | -8.615850e-47 |
| Msa0853440 | Msa1042660 | 0.801036 | 1.088212e-48 | -8.615850e-47 |
| Msa0853440 | Msa1054510 | 0.820781 | 5.720211e-53 | -8.615850e-47 |
| Msa0853440 | Msa1062020 | 0.806635 | 7.474519e-50 | -8.615850e-47 |
| Msa0853440 | Msa1062030 | 0.805862 | 1.087726e-49 | -8.615850e-47 |
| Msa0853440 | Msa1062040 | 0.869391 | 3.208300e-66 | -8.615850e-47 |
| Msa0853440 | Msa1094280 | 0.818916 | 1.527045e-52 | -8.615850e-47 |
| Msa0853440 | Msa1107190 | 0.807048 | 6.113230e-50 | -8.615850e-47 |
| Msa0853440 | Msa1107200 | 0.881723 | 1.893975e-70 | -8.615850e-47 |
| Msa0853440 | Msa1107260 | 0.810341 | 1.209303e-50 | -8.615850e-47 |
| Msa0853440 | Msa1109810 | 0.815748 | 7.887669e-52 | -8.615850e-47 |
| Msa0853440 | Msa1150780 | 0.856032 | 4.231563e-62 | -8.615850e-47 |
| Msa0853440 | Msa1150790 | 0.804149 | 2.480709e-49 | -8.615850e-47 |
| Msa0853440 | Msa1150800 | 0.844821 | 5.962307e-59 | -8.615850e-47 |
| Msa0853440 | Msa1150810 | 0.844814 | 5.988341e-59 | -8.615850e-47 |
| Msa0853440 | Msa1176200 | 0.802021 | 6.836607e-49 | -8.615850e-47 |
| Msa0853440 | Msa1183140 | 0.829279 | 5.626705e-55 | -8.615850e-47 |
| Msa0853440 | Msa1187590 | 0.801698 | 7.963712e-49 | -8.615850e-47 |
| Msa0853440 | Msa1197070 | 0.833889 | 4.114665e-56 | -8.615850e-47 |
| Msa0853440 | Msa1208380 | 0.821687 | 3.535760e-53 | -8.615850e-47 |
| Msa0853440 | Msa1209190 | 0.817430 | 3.312146e-52 | -8.615850e-47 |
| Msa0853440 | Msa1209860 | 0.838380 | 2.976027e-57 | -8.615850e-47 |
| Msa0853440 | Msa1214170 | 0.823877 | 1.093388e-53 | -8.615850e-47 |
| Msa0853440 | Msa1220880 | 0.826480 | 2.650834e-54 | -8.615850e-47 |
| Msa0853440 | Msa1225580 | 0.825140 | 5.512448e-54 | -8.615850e-47 |
| Msa0853440 | Msa1229480 | 0.831138 | 1.977907e-55 | -8.615850e-47 |
| Msa0853440 | Msa1239400 | 0.804836 | 1.784273e-49 | -8.615850e-47 |
| Msa0853440 | Msa1250110 | 0.804949 | 1.689977e-49 | -8.615850e-47 |
| Msa0853440 | Msa1259530 | 0.801651 | 8.141067e-49 | -8.615850e-47 |
| Msa0853440 | Msa1260680 | 0.837983 | 3.766046e-57 | -8.615850e-47 |
| Msa0853440 | Msa1266170 | 0.819270 | 1.268229e-52 | -8.615850e-47 |
| Msa0853440 | Msa1270660 | 0.808600 | 2.859937e-50 | -8.615850e-47 |
| Msa0853440 | Msa1272320 | 0.800292 | 1.543568e-48 | -8.615850e-47 |
| Msa0853440 | Msa1277780 | 0.801417 | 9.094499e-49 | -8.615850e-47 |
| Msa0853440 | Msa1279480 | 0.802393 | 5.732453e-49 | -8.615850e-47 |
| Msa0853440 | Msa1280170 | 0.841081 | 5.899058e-58 | -8.615850e-47 |
| Msa0853440 | Msa1285200 | 0.809487 | 1.846717e-50 | -8.615850e-47 |
| Msa0853440 | Msa1307180 | 0.832923 | 7.165260e-56 | -8.615850e-47 |
| Msa0853440 | Msa1309760 | 0.808863 | 2.512821e-50 | -8.615850e-47 |
| Msa0853440 | Msa1316360 | 0.831163 | 1.950650e-55 | -8.615850e-47 |
| Msa0853440 | Msa1329870 | 0.803875 | 2.828474e-49 | -8.615850e-47 |
| Msa0853440 | Msa1332050 | 0.801475 | 8.848482e-49 | -8.615850e-47 |
| Msa0853440 | Msa1335230 | 0.819727 | 9.977711e-53 | -8.615850e-47 |
| Msa0853440 | Msa1352660 | 0.841511 | 4.546068e-58 | -8.615850e-47 |
| Msa0853440 | Msa1355510 | 0.806379 | 8.466008e-50 | -8.615850e-47 |
| Msa0853440 | Msa1355890 | 0.834380 | 3.100036e-56 | -8.615850e-47 |
| Msa0853440 | Msa1360020 | 0.821695 | 3.521528e-53 | -8.615850e-47 |
| Msa0853440 | Msa1382020 | 0.819910 | 9.059353e-53 | -8.615850e-47 |
| Msa0853440 | Msa1384100 | 0.800129 | 1.665947e-48 | -8.615850e-47 |
| Msa0853440 | Msa1388830 | 0.833913 | 4.058625e-56 | -8.615850e-47 |
| Msa0853440 | Msa1389760 | 0.800410 | 1.460256e-48 | -8.615850e-47 |
| Msa0853440 | Msa1405220 | 0.800934 | 1.141759e-48 | -8.615850e-47 |
| Msa0853440 | Msa1411410 | 0.807713 | 4.419016e-50 | -8.615850e-47 |
| Msa0853440 | Msa1421210 | 0.997882 | 3.418240e-251 | -8.615850e-47 |
| Msa0853440 | Msa1421900 | 0.807039 | 6.141287e-50 | -8.615850e-47 |
| Msa0853440 | Msa1422810 | 0.807888 | 4.055919e-50 | -8.615850e-47 |
| Msa0853440 | Msa1423540 | 0.821619 | 3.667665e-53 | -8.615850e-47 |
| Msa0853440 | Msa1423820 | 0.803713 | 3.056586e-49 | -8.615850e-47 |
| Msa0853440 | Msa1428780 | 0.805973 | 1.030442e-49 | -8.615850e-47 |
| Msa0853440 | Msa1430130 | 0.835323 | 1.793812e-56 | -8.615850e-47 |
| Msa0853440 | Msa1438840 | 0.838536 | 2.712748e-57 | -8.615850e-47 |
| Msa0853440 | Msa1460750 | 0.835803 | 1.356593e-56 | -8.615850e-47 |
| Msa0853440 | Msa1462470 | 0.814320 | 1.636319e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853440 | MtrunA17_Chr5g0430011 | 95.137 | 329 | 11 | 1 | 1 | 329 | 1 | 324 | 0.0 | 629 |
| Msa0853440 | MtrunA17_Chr5g0430001 | 90.274 | 329 | 26 | 2 | 1 | 329 | 1 | 323 | 0.0 | 616 |
| Msa0853440 | MtrunA17_Chr4g0050421 | 69.497 | 318 | 86 | 3 | 22 | 329 | 29 | 345 | 1.27e-165 | 464 |
| Msa0853440 | MtrunA17_Chr5g0409121 | 63.475 | 282 | 100 | 1 | 51 | 329 | 49 | 330 | 1.42e-139 | 398 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0853440 | AT5G64210.1 | 67.586 | 290 | 86 | 3 | 44 | 329 | 68 | 353 | 1.17e-148 | 422 |
| Msa0853440 | AT3G22370.1 | 66.423 | 274 | 92 | 0 | 56 | 329 | 81 | 354 | 1.98e-144 | 412 |
| Msa0853440 | AT3G22360.1 | 64.029 | 278 | 100 | 0 | 52 | 329 | 48 | 325 | 4.99e-141 | 402 |
| Msa0853440 | AT1G32350.1 | 58.360 | 317 | 126 | 1 | 19 | 329 | 2 | 318 | 2.25e-137 | 392 |
| Msa0853440 | AT3G27620.1 | 66.538 | 260 | 87 | 0 | 70 | 329 | 70 | 329 | 4.06e-137 | 392 |
| Msa0853440 | AT1G32350.2 | 57.383 | 298 | 121 | 1 | 19 | 310 | 2 | 299 | 1.43e-125 | 362 |
| Msa0853440 | AT4G22260.1 | 30.729 | 192 | 109 | 5 | 132 | 302 | 111 | 299 | 5.08e-14 | 72.4 |
Find 93 sgRNAs with CRISPR-Local
Find 180 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGCTATTGCAATTGATTAT+TGG | 0.137756 | 5_4:-45274250 | Msa0853440:CDS |
| CTTTCAATTCCTTTCCTTGA+TGG | 0.150163 | 5_4:+45273443 | None:intergenic |
| TATCAGAAATGTCTTAATTT+TGG | 0.157555 | 5_4:-45273100 | Msa0853440:three_prime_UTR |
| TTTATACATGCAACAAATTT+AGG | 0.164623 | 5_4:+45276113 | None:intergenic |
| TTGTGTATTGATAAACTTTC+AGG | 0.169243 | 5_4:+45273256 | None:intergenic |
| ACATAGATTTGTTGGTTATT+TGG | 0.210434 | 5_4:-45274348 | Msa0853440:CDS |
| CCTTCCTCGACCTTTCTTCT+TGG | 0.219102 | 5_4:-45276206 | Msa0853440:five_prime_UTR |
| TCAGATCTGTCAAGTTTCTA+AGG | 0.232736 | 5_4:-45275000 | Msa0853440:CDS |
| ACGCCGTTGTTTCGAGTTAC+TGG | 0.248772 | 5_4:-45275808 | Msa0853440:CDS |
| AATCAATATTAGTTTGGCTT+TGG | 0.327980 | 5_4:-45273144 | Msa0853440:three_prime_UTR |
| GCTCTCTGATTTGTATTTCA+AGG | 0.339484 | 5_4:-45274975 | Msa0853440:intron |
| AAAATAGCACATAGATTTGT+TGG | 0.354084 | 5_4:-45274356 | Msa0853440:CDS |
| AGCATCCCTCCCACCATTCC+AGG | 0.354203 | 5_4:+45274578 | None:intergenic |
| TAATTACTGCAGGAACGATA+TGG | 0.355715 | 5_4:-45274638 | Msa0853440:intron |
| CCACCAAACAATTCCTTGAT+TGG | 0.358528 | 5_4:+45273223 | None:intergenic |
| TAGTAAAATCAATATTAGTT+TGG | 0.365413 | 5_4:-45273150 | Msa0853440:three_prime_UTR |
| CACCCAATCAAGGAATTGTT+TGG | 0.379891 | 5_4:-45273226 | Msa0853440:three_prime_UTR |
| CAGTAGGCCTAAGGTTCTTA+AGG | 0.396717 | 5_4:-45275780 | Msa0853440:CDS |
| GGTGATGATCATCTATCTAC+AGG | 0.406891 | 5_4:-45273196 | Msa0853440:three_prime_UTR |
| CGCCGTTGTTTCGAGTTACT+GGG | 0.409023 | 5_4:-45275807 | Msa0853440:CDS |
| AAGGAATTGTTTGGTGGTCT+TGG | 0.413681 | 5_4:-45273217 | Msa0853440:three_prime_UTR |
| TCCTAAGGATGCAACGCTTA+AGG | 0.426108 | 5_4:-45274222 | Msa0853440:CDS |
| CGAGCTTTGTTCCGCAGTGG+TGG | 0.429833 | 5_4:-45276004 | Msa0853440:CDS |
| GTGCTGATGAGGCTCATCAT+AGG | 0.433399 | 5_4:-45274181 | Msa0853440:CDS |
| AAAAGCCTCTCATGCCAACT+TGG | 0.437573 | 5_4:+45274440 | None:intergenic |
| GTGCTTGTGGAAGCTTGTAC+TGG | 0.442938 | 5_4:-45275916 | Msa0853440:CDS |
| CACCAAACAATTCCTTGATT+GGG | 0.444770 | 5_4:+45273224 | None:intergenic |
| TCCTTAAGCGTTGCATCCTT+AGG | 0.446034 | 5_4:+45274221 | None:intergenic |
| TGCAATTGAAAGTGGTAAAG+TGG | 0.449348 | 5_4:-45274288 | Msa0853440:CDS |
| GAAACAATAGCAGCTGTCCC+TGG | 0.459329 | 5_4:-45274596 | Msa0853440:CDS |
| AAGTTGGCATGAGAGGCTTT+TGG | 0.469081 | 5_4:-45274438 | Msa0853440:CDS |
| CAGATCTGTCAAGTTTCTAA+GGG | 0.482561 | 5_4:-45274999 | Msa0853440:CDS |
| TTGTAGGATATTCACCATCA+AGG | 0.489202 | 5_4:-45273457 | Msa0853440:intron |
| CAATGATAACCAACAGGAGC+TGG | 0.493882 | 5_4:+45273415 | None:intergenic |
| CCATCCTCCTTAAGAACCTT+AGG | 0.498410 | 5_4:+45275773 | None:intergenic |
| CTAAGAAAATTTCAACATGC+TGG | 0.498550 | 5_4:-45274539 | Msa0853440:CDS |
| CATTTAGATGCAATTGAAAG+TGG | 0.503861 | 5_4:-45274296 | Msa0853440:CDS |
| CAATAATCAATTGCAATAGC+AGG | 0.503907 | 5_4:+45274251 | None:intergenic |
| GTGGCCATGGAACTGCTTCA+TGG | 0.504226 | 5_4:-45275744 | Msa0853440:intron |
| AATTTCAACATGCTGGTGGT+TGG | 0.505111 | 5_4:-45274532 | Msa0853440:CDS |
| TTGGAGTTACCTTGTCCTTG+TGG | 0.506908 | 5_4:-45276187 | Msa0853440:five_prime_UTR |
| ATGACTCAATGATAACCAAC+AGG | 0.508368 | 5_4:+45273409 | None:intergenic |
| AGGGATGATGCTTCACAGAA+TGG | 0.509926 | 5_4:-45273176 | Msa0853440:three_prime_UTR |
| CGAGTTACTGGGGTATCAGT+AGG | 0.516108 | 5_4:-45275796 | Msa0853440:CDS |
| TTGAAGAAGCAGAGAATGAA+AGG | 0.517469 | 5_4:-45274496 | Msa0853440:CDS |
| AGGATGGAACTGAGTGGCCA+TGG | 0.518415 | 5_4:-45275757 | Msa0853440:CDS |
| TAGATTTGTTGGTTATTTGG+AGG | 0.518817 | 5_4:-45274345 | Msa0853440:CDS |
| TGCTGATGAGGCTCATCATA+GGG | 0.523825 | 5_4:-45274180 | Msa0853440:CDS |
| TGAAACCAAGTTGGCATGAG+AGG | 0.527939 | 5_4:-45274445 | Msa0853440:CDS |
| CAATATCTCTCACCCAATCA+AGG | 0.528829 | 5_4:-45273236 | Msa0853440:three_prime_UTR |
| TGATTATTGGAGACTTCCTA+AGG | 0.530834 | 5_4:-45274237 | Msa0853440:CDS |
| CCTAAGGTTCTTAAGGAGGA+TGG | 0.531919 | 5_4:-45275773 | Msa0853440:CDS |
| AGCAGCTGTCCCTGGAATGG+TGG | 0.537892 | 5_4:-45274588 | Msa0853440:CDS |
| CAGCATGGCGGTGGTGCTTG+TGG | 0.537975 | 5_4:-45275929 | Msa0853440:CDS |
| CACTGTTATTCGTGCTGATG+AGG | 0.539250 | 5_4:-45274192 | Msa0853440:CDS |
| CTGTCCCTGGAATGGTGGGA+GGG | 0.543809 | 5_4:-45274583 | Msa0853440:CDS |
| CTGGGGTATCAGTAGGCCTA+AGG | 0.544437 | 5_4:-45275789 | Msa0853440:CDS |
| CCGCCATGCTGATGTTGTCT+CGG | 0.548514 | 5_4:+45275941 | None:intergenic |
| AGACAACATCAGCATGGCGG+TGG | 0.550470 | 5_4:-45275938 | Msa0853440:CDS |
| CCAATCAAGGAATTGTTTGG+TGG | 0.552609 | 5_4:-45273223 | Msa0853440:three_prime_UTR |
| TTTGGTTATTACTGCACAAG+GGG | 0.555806 | 5_4:-45274420 | Msa0853440:CDS |
| TCAATTGCAATAGCAGGAGC+AGG | 0.557374 | 5_4:+45274257 | None:intergenic |
| AAAGAGGCTCCAGCTCCTGT+TGG | 0.560458 | 5_4:-45273424 | Msa0853440:CDS |
| GAGCTTTGTTCCGCAGTGGT+GGG | 0.563025 | 5_4:-45276003 | Msa0853440:CDS |
| CAAGGTAACTCCAAGAAGAA+AGG | 0.563616 | 5_4:+45276196 | None:intergenic |
| CTTACCATGAAGCAGTTCCA+TGG | 0.568629 | 5_4:+45275740 | None:intergenic |
| AGAAAATTTCAACATGCTGG+TGG | 0.571281 | 5_4:-45274536 | Msa0853440:CDS |
| AATAGCAGCTGTCCCTGGAA+TGG | 0.571632 | 5_4:-45274591 | Msa0853440:CDS |
| AACTCCAAGAAGAAAGGTCG+AGG | 0.579967 | 5_4:+45276202 | None:intergenic |
| TTGTTTCTAGCATCATTGCA+TGG | 0.582988 | 5_4:+45274612 | None:intergenic |
| GTGGAAGCTTGTACTGGCAG+AGG | 0.584497 | 5_4:-45275910 | Msa0853440:CDS |
| TCAAGGAAAGGAATTGAAAG+AGG | 0.585266 | 5_4:-45273440 | Msa0853440:CDS |
| GCTGTCCCTGGAATGGTGGG+AGG | 0.588333 | 5_4:-45274584 | Msa0853440:CDS |
| GCAGCTGTCCCTGGAATGGT+GGG | 0.590768 | 5_4:-45274587 | Msa0853440:CDS |
| CCAAGAAGAAAGGTCGAGGA+AGG | 0.596141 | 5_4:+45276206 | None:intergenic |
| TCAACTTTGTGTTTGCCACA+AGG | 0.597892 | 5_4:+45276172 | None:intergenic |
| GGATATTCACCATCAAGGAA+AGG | 0.604645 | 5_4:-45273452 | Msa0853440:CDS |
| TTGTGTTTGCCACAAGGACA+AGG | 0.607869 | 5_4:+45276178 | None:intergenic |
| GCATCCCTCCCACCATTCCA+GGG | 0.622243 | 5_4:+45274579 | None:intergenic |
| GCCGTTGTTTCGAGTTACTG+GGG | 0.628977 | 5_4:-45275806 | Msa0853440:CDS |
| TCTGAACTGTAACTTTCCCA+TGG | 0.639567 | 5_4:+45275082 | None:intergenic |
| AGGTCGAGGAAGGTTTCATG+TGG | 0.643294 | 5_4:+45276216 | None:intergenic |
| GCACGAGCTTTGTTCCGCAG+TGG | 0.647126 | 5_4:-45276007 | Msa0853440:CDS |
| TTGAGCTTGTGAAACCAAGT+TGG | 0.652337 | 5_4:-45274454 | Msa0853440:CDS |
| TGAAAGTTTAGAGACAACAA+AGG | 0.660508 | 5_4:+45273334 | None:intergenic |
| TAGGCCTAAGGTTCTTAAGG+AGG | 0.663923 | 5_4:-45275777 | Msa0853440:CDS |
| GTGATGATCATCTATCTACA+GGG | 0.669055 | 5_4:-45273195 | Msa0853440:three_prime_UTR |
| AAGGATGCATTTGATGACAA+TGG | 0.671655 | 5_4:-45274477 | Msa0853440:CDS |
| CAGCCGAGACAACATCAGCA+TGG | 0.676336 | 5_4:-45275944 | Msa0853440:CDS |
| ACCCCAGTAACTCGAAACAA+CGG | 0.693976 | 5_4:+45275805 | None:intergenic |
| CCGAGACAACATCAGCATGG+CGG | 0.731392 | 5_4:-45275941 | Msa0853440:CDS |
| TTAAGGAGGATGGAACTGAG+TGG | 0.746044 | 5_4:-45275763 | Msa0853440:CDS |
| GGTGGTAGTTCCCACCACTG+CGG | 0.755021 | 5_4:+45275993 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATATTTTATATATATAGTGA+TGG | + | chr5_4:45274348-45274367 | None:intergenic | 10.0% |
| !!! | AATGTTAAGATTTATATTTT+AGG | - | chr5_4:45275267-45275286 | Msa0853440:intron | 10.0% |
| !! | TATTTAAAAAATGAATCTAA+TGG | - | chr5_4:45276251-45276270 | Msa0853440:five_prime_UTR | 10.0% |
| !!! | GTAAATGTTTTATAACTTTT+TGG | + | chr5_4:45273197-45273216 | None:intergenic | 15.0% |
| !! | TCAATGTAAATTTAATTCTA+GGG | - | chr5_4:45274070-45274089 | Msa0853440:intron | 15.0% |
| !! | ACACAATTATAATGAAAATT+TGG | + | chr5_4:45275131-45275150 | None:intergenic | 15.0% |
| !! | TTCATTATAATTGTGTTAAA+AGG | - | chr5_4:45275135-45275154 | Msa0853440:intron | 15.0% |
| !! | TTCAAATTCTATATTTATAG+AGG | + | chr5_4:45275173-45275192 | None:intergenic | 15.0% |
| !!! | ATTTTTGAAGAATTTTTTGT+GGG | + | chr5_4:45275435-45275454 | None:intergenic | 15.0% |
| !!! | TATTTTTGAAGAATTTTTTG+TGG | + | chr5_4:45275436-45275455 | None:intergenic | 15.0% |
| !!! | TTTTATTTATTGAACAATTC+AGG | + | chr5_4:45275957-45275976 | None:intergenic | 15.0% |
| !! | TAGTAAAATCAATATTAGTT+TGG | - | chr5_4:45276108-45276127 | Msa0853440:five_prime_UTR | 15.0% |
| !! | TTTATACATGCAACAAATTT+AGG | + | chr5_4:45273148-45273167 | None:intergenic | 20.0% |
| !!! | ACATGAGAAACATTTTAATA+AGG | - | chr5_4:45273222-45273241 | Msa0853440:three_prime_UTR | 20.0% |
| !! | AAGAATACATATATAGAAAG+AGG | - | chr5_4:45273538-45273557 | Msa0853440:intron | 20.0% |
| !! | ATTTATATTGAAACCAAACA+GGG | + | chr5_4:45273803-45273822 | None:intergenic | 20.0% |
| !! | TATTTATATTGAAACCAAAC+AGG | + | chr5_4:45273804-45273823 | None:intergenic | 20.0% |
| !! | TATCATATGAAAGTAATCAA+TGG | + | chr5_4:45273846-45273865 | None:intergenic | 20.0% |
| !! | TATAATGAAATATAGTAAGC+TGG | - | chr5_4:45274042-45274061 | Msa0853440:intron | 20.0% |
| !! | ATAATGAAATATAGTAAGCT+GGG | - | chr5_4:45274043-45274062 | Msa0853440:intron | 20.0% |
| !! | CTCAATGTAAATTTAATTCT+AGG | - | chr5_4:45274069-45274088 | Msa0853440:intron | 20.0% |
| !! | AACATCATATATAGAAAACA+TGG | + | chr5_4:45274147-45274166 | None:intergenic | 20.0% |
| !!! | CAATACATTACATTGTTTTT+TGG | + | chr5_4:45274480-45274499 | None:intergenic | 20.0% |
| !! | TGTAATGTATTGTAGTAAAT+CGG | - | chr5_4:45274488-45274507 | Msa0853440:CDS | 20.0% |
| !! | ATTTGAATTATAATTACTGC+AGG | - | chr5_4:45274610-45274629 | Msa0853440:CDS | 20.0% |
| !! | GAATTTGAATTAATTGTGAT+AGG | - | chr5_4:45275184-45275203 | Msa0853440:intron | 20.0% |
| !! | TTCAAACTTAGTTTCTTTAA+GGG | + | chr5_4:45275674-45275693 | None:intergenic | 20.0% |
| !! | TTTCAAACTTAGTTTCTTTA+AGG | + | chr5_4:45275675-45275694 | None:intergenic | 20.0% |
| !! | AGTGTCTAAAAAACTATAAT+GGG | + | chr5_4:45275728-45275747 | None:intergenic | 20.0% |
| !!! | TATCAGAAATGTCTTAATTT+TGG | - | chr5_4:45276158-45276177 | Msa0853440:five_prime_UTR | 20.0% |
| !! | AATAAGTTGAACAATATCAC+CGG | - | chr5_4:45273695-45273714 | Msa0853440:intron | 25.0% |
| ! | AAAGAATTTATGAAAACAGC+CGG | + | chr5_4:45273717-45273736 | None:intergenic | 25.0% |
| ! | ATATGAAAGTAATCAATGGT+TGG | + | chr5_4:45273842-45273861 | None:intergenic | 25.0% |
| !!! | AAAAAATTTGATTTGAGAGC+TGG | - | chr5_4:45273999-45274018 | Msa0853440:intron | 25.0% |
| ! | GTATTTGAATGATTTCTCAT+AGG | - | chr5_4:45274121-45274140 | Msa0853440:intron | 25.0% |
| ! | ATCATGTACCAAAAACATTT+GGG | - | chr5_4:45274222-45274241 | Msa0853440:CDS | 25.0% |
| ! | ATTTGTATTTCAAGGTTTGT+GGG | - | chr5_4:45274291-45274310 | Msa0853440:CDS | 25.0% |
| !!! | ACAAATCTATGTGCTATTTT+CGG | + | chr5_4:45274902-45274921 | None:intergenic | 25.0% |
| ! | AAAATAGCACATAGATTTGT+TGG | - | chr5_4:45274902-45274921 | Msa0853440:intron | 25.0% |
| !!! | ACATAGATTTGTTGGTTATT+TGG | - | chr5_4:45274910-45274929 | Msa0853440:intron | 25.0% |
| ! | AATCATTTCATTTGTGATGT+TGG | - | chr5_4:45275225-45275244 | Msa0853440:intron | 25.0% |
| ! | GTTAAATCTTCAACGAAATT+TGG | - | chr5_4:45275300-45275319 | Msa0853440:intron | 25.0% |
| ! | GAGTGTCTAAAAAACTATAA+TGG | + | chr5_4:45275729-45275748 | None:intergenic | 25.0% |
| !! | TTGTGTATTGATAAACTTTC+AGG | + | chr5_4:45276005-45276024 | None:intergenic | 25.0% |
| !! | AATCAATATTAGTTTGGCTT+TGG | - | chr5_4:45276114-45276133 | Msa0853440:five_prime_UTR | 25.0% |
| AAGAATGATGCCAAAAACAA+CGG | - | chr5_4:45273416-45273435 | Msa0853440:CDS | 30.0% | |
| ATCTCAAAGTTTACGTTAGT+AGG | - | chr5_4:45273745-45273764 | Msa0853440:intron | 30.0% | |
| ATCAATGATTACATAGCTAC+CGG | + | chr5_4:45273909-45273928 | None:intergenic | 30.0% | |
| CATCATGTACCAAAAACATT+TGG | - | chr5_4:45274221-45274240 | Msa0853440:CDS | 30.0% | |
| TCATGTACCAAAAACATTTG+GGG | - | chr5_4:45274223-45274242 | Msa0853440:CDS | 30.0% | |
| GATTTGTATTTCAAGGTTTG+TGG | - | chr5_4:45274290-45274309 | Msa0853440:CDS | 30.0% | |
| !! | GACTTTTTCCGTGAAAAAAT+CGG | - | chr5_4:45274444-45274463 | Msa0853440:CDS | 30.0% |
| !!! | TTGACAATCCGATTTTTTCA+CGG | + | chr5_4:45274455-45274474 | None:intergenic | 30.0% |
| TGTATTGTAGTAAATCGGAT+TGG | - | chr5_4:45274493-45274512 | Msa0853440:CDS | 30.0% | |
| ACTGTAAAAAAGTTTCGTAG+AGG | + | chr5_4:45274558-45274577 | None:intergenic | 30.0% | |
| CTAAGAAAATTTCAACATGC+TGG | - | chr5_4:45274719-45274738 | Msa0853440:intron | 30.0% | |
| !! | TTTTGGTTATTACTGCACAA+GGG | - | chr5_4:45274837-45274856 | Msa0853440:intron | 30.0% |
| !! | TAGATTTGTTGGTTATTTGG+AGG | - | chr5_4:45274913-45274932 | Msa0853440:intron | 30.0% |
| CATTTAGATGCAATTGAAAG+TGG | - | chr5_4:45274962-45274981 | Msa0853440:intron | 30.0% | |
| CAATAATCAATTGCAATAGC+AGG | + | chr5_4:45275010-45275029 | None:intergenic | 30.0% | |
| CTGCTATTGCAATTGATTAT+TGG | - | chr5_4:45275008-45275027 | Msa0853440:CDS | 30.0% | |
| ATGAAATGATTGTGTGAATG+TGG | + | chr5_4:45275216-45275235 | None:intergenic | 30.0% | |
| ATACTCTCTATTCACACAAT+TGG | + | chr5_4:45275360-45275379 | None:intergenic | 30.0% | |
| ! | CATGTGGATTTTCATTAGAT+AGG | - | chr5_4:45275542-45275561 | Msa0853440:intron | 30.0% |
| !! | TGTTGTGTTGTACTTTTTGT+AGG | - | chr5_4:45275785-45275804 | Msa0853440:CDS | 30.0% |
| TGAAAGTTTAGAGACAACAA+AGG | + | chr5_4:45275927-45275946 | None:intergenic | 30.0% | |
| !! | GCTGTTATTACCGTTGTTTT+TGG | + | chr5_4:45273429-45273448 | None:intergenic | 35.0% |
| ATCAGTTACTTGATCTTGCA+TGG | - | chr5_4:45274094-45274113 | Msa0853440:intron | 35.0% | |
| !!! | TGTTTTTGGTACATGATGCT+TGG | + | chr5_4:45274219-45274238 | None:intergenic | 35.0% |
| ! | AACTTGTCCCCAAATGTTTT+TGG | + | chr5_4:45274233-45274252 | None:intergenic | 35.0% |
| TCAGATCTGTCAAGTTTCTA+AGG | - | chr5_4:45274258-45274277 | Msa0853440:CDS | 35.0% | |
| CAGATCTGTCAAGTTTCTAA+GGG | - | chr5_4:45274259-45274278 | Msa0853440:CDS | 35.0% | |
| ! | GCTCTCTGATTTGTATTTCA+AGG | - | chr5_4:45274283-45274302 | Msa0853440:CDS | 35.0% |
| ! | AGACTTGGTTATTCCAAGTT+CGG | - | chr5_4:45274532-45274551 | Msa0853440:CDS | 35.0% |
| TAATTACTGCAGGAACGATA+TGG | - | chr5_4:45274620-45274639 | Msa0853440:CDS | 35.0% | |
| !! | TTGTTTCTAGCATCATTGCA+TGG | + | chr5_4:45274649-45274668 | None:intergenic | 35.0% |
| AGAAAATTTCAACATGCTGG+TGG | - | chr5_4:45274722-45274741 | Msa0853440:intron | 35.0% | |
| TTGAAGAAGCAGAGAATGAA+AGG | - | chr5_4:45274762-45274781 | Msa0853440:intron | 35.0% | |
| ! | AAGGATGCATTTGATGACAA+TGG | - | chr5_4:45274781-45274800 | Msa0853440:intron | 35.0% |
| !! | CTTTTGGTTATTACTGCACA+AGG | - | chr5_4:45274836-45274855 | Msa0853440:intron | 35.0% |
| TTTGGTTATTACTGCACAAG+GGG | - | chr5_4:45274838-45274857 | Msa0853440:intron | 35.0% | |
| TGCAATTGAAAGTGGTAAAG+TGG | - | chr5_4:45274970-45274989 | Msa0853440:intron | 35.0% | |
| TGATTATTGGAGACTTCCTA+AGG | - | chr5_4:45275021-45275040 | Msa0853440:CDS | 35.0% | |
| TATGGTCGTTTAATCGAGAT+AGG | + | chr5_4:45275331-45275350 | None:intergenic | 35.0% | |
| AACATTCAGAACAAACGAAG+AGG | + | chr5_4:45275769-45275788 | None:intergenic | 35.0% | |
| TTGTAGGATATTCACCATCA+AGG | - | chr5_4:45275801-45275820 | Msa0853440:CDS | 35.0% | |
| CTTTCAATTCCTTTCCTTGA+TGG | + | chr5_4:45275818-45275837 | None:intergenic | 35.0% | |
| TCAAGGAAAGGAATTGAAAG+AGG | - | chr5_4:45275818-45275837 | Msa0853440:CDS | 35.0% | |
| ATGACTCAATGATAACCAAC+AGG | + | chr5_4:45275852-45275871 | None:intergenic | 35.0% | |
| CACCAAACAATTCCTTGATT+GGG | + | chr5_4:45276037-45276056 | None:intergenic | 35.0% | |
| GTGATGATCATCTATCTACA+GGG | - | chr5_4:45276063-45276082 | Msa0853440:five_prime_UTR | 35.0% | |
| CAAGGTAACTCCAAGAAGAA+AGG | + | chr5_4:45273065-45273084 | None:intergenic | 40.0% | |
| TCAACTTTGTGTTTGCCACA+AGG | + | chr5_4:45273089-45273108 | None:intergenic | 40.0% | |
| !!! | GTCTGCTGATCTTTTTTCTC+TGG | + | chr5_4:45273386-45273405 | None:intergenic | 40.0% |
| GAAAAAAGATCAGCAGACAG+AGG | - | chr5_4:45273388-45273407 | Msa0853440:three_prime_UTR | 40.0% | |
| ATGATGTTTGTTTGCAGCCA+TGG | - | chr5_4:45274159-45274178 | Msa0853440:intron | 40.0% | |
| TGATGTTTGTTTGCAGCCAT+GGG | - | chr5_4:45274160-45274179 | Msa0853440:CDS | 40.0% | |
| TCTGAACTGTAACTTTCCCA+TGG | + | chr5_4:45274179-45274198 | None:intergenic | 40.0% | |
| AGACCAATAAATCCGTTGTC+CGG | - | chr5_4:45274402-45274421 | Msa0853440:CDS | 40.0% | |
| TCACATGAGAAGAAGAGACT+TGG | - | chr5_4:45274517-45274536 | Msa0853440:CDS | 40.0% | |
| AATTTCAACATGCTGGTGGT+TGG | - | chr5_4:45274726-45274745 | Msa0853440:intron | 40.0% | |
| TTGAGCTTGTGAAACCAAGT+TGG | - | chr5_4:45274804-45274823 | Msa0853440:intron | 40.0% | |
| !!! | TATGTGCTATTTTCGGTGAG+AGG | + | chr5_4:45274895-45274914 | None:intergenic | 40.0% |
| TTGTGATGTTGGATCGAGAT+TGG | - | chr5_4:45275236-45275255 | Msa0853440:intron | 40.0% | |
| TCACACAATTGGCGCATATA+TGG | + | chr5_4:45275349-45275368 | None:intergenic | 40.0% | |
| !! | TAGAGAGTATTGTCAGTTGC+AGG | - | chr5_4:45275370-45275389 | Msa0853440:intron | 40.0% |
| ! | GTCATGTGACACTTTTCATG+TGG | - | chr5_4:45275526-45275545 | Msa0853440:intron | 40.0% |
| GGATATTCACCATCAAGGAA+AGG | - | chr5_4:45275806-45275825 | Msa0853440:CDS | 40.0% | |
| CAATATCTCTCACCCAATCA+AGG | - | chr5_4:45276022-45276041 | Msa0853440:CDS | 40.0% | |
| CACCCAATCAAGGAATTGTT+TGG | - | chr5_4:45276032-45276051 | Msa0853440:CDS | 40.0% | |
| CCACCAAACAATTCCTTGAT+TGG | + | chr5_4:45276038-45276057 | None:intergenic | 40.0% | |
| CCAATCAAGGAATTGTTTGG+TGG | - | chr5_4:45276035-45276054 | Msa0853440:CDS | 40.0% | |
| ! | AAGGAATTGTTTGGTGGTCT+TGG | - | chr5_4:45276041-45276060 | Msa0853440:exon | 40.0% |
| GGTGATGATCATCTATCTAC+AGG | - | chr5_4:45276062-45276081 | Msa0853440:five_prime_UTR | 40.0% | |
| AACTCCAAGAAGAAAGGTCG+AGG | + | chr5_4:45273059-45273078 | None:intergenic | 45.0% | |
| TTGGAGTTACCTTGTCCTTG+TGG | - | chr5_4:45273071-45273090 | Msa0853440:three_prime_UTR | 45.0% | |
| TTGTGTTTGCCACAAGGACA+AGG | + | chr5_4:45273083-45273102 | None:intergenic | 45.0% | |
| TCACCGCTGTTGAAAAACTG+CGG | + | chr5_4:45273289-45273308 | None:intergenic | 45.0% | |
| ACCCCAGTAACTCGAAACAA+CGG | + | chr5_4:45273456-45273475 | None:intergenic | 45.0% | |
| CAGTAGGCCTAAGGTTCTTA+AGG | - | chr5_4:45273478-45273497 | Msa0853440:intron | 45.0% | |
| TAGGCCTAAGGTTCTTAAGG+AGG | - | chr5_4:45273481-45273500 | Msa0853440:intron | 45.0% | |
| CCATCCTCCTTAAGAACCTT+AGG | + | chr5_4:45273488-45273507 | None:intergenic | 45.0% | |
| CCTAAGGTTCTTAAGGAGGA+TGG | - | chr5_4:45273485-45273504 | Msa0853440:intron | 45.0% | |
| TTAAGGAGGATGGAACTGAG+TGG | - | chr5_4:45273495-45273514 | Msa0853440:intron | 45.0% | |
| CTTACCATGAAGCAGTTCCA+TGG | + | chr5_4:45273521-45273540 | None:intergenic | 45.0% | |
| CGAAACAGACAAACCCTGTT+TGG | - | chr5_4:45273787-45273806 | Msa0853440:intron | 45.0% | |
| ! | AAGCCGGACAACGGATTTAT+TGG | + | chr5_4:45274408-45274427 | None:intergenic | 45.0% |
| ATAAATCCGTTGTCCGGCTT+TGG | - | chr5_4:45274408-45274427 | Msa0853440:CDS | 45.0% | |
| ! | TGAAACCAAGTTGGCATGAG+AGG | - | chr5_4:45274813-45274832 | Msa0853440:intron | 45.0% |
| AAAAGCCTCTCATGCCAACT+TGG | + | chr5_4:45274821-45274840 | None:intergenic | 45.0% | |
| ! | AAGTTGGCATGAGAGGCTTT+TGG | - | chr5_4:45274820-45274839 | Msa0853440:intron | 45.0% |
| ! | GCACAAGGGGTTTTCTTCAA+TGG | - | chr5_4:45274851-45274870 | Msa0853440:intron | 45.0% |
| TCAATTGCAATAGCAGGAGC+AGG | + | chr5_4:45275004-45275023 | None:intergenic | 45.0% | |
| TCCTAAGGATGCAACGCTTA+AGG | - | chr5_4:45275036-45275055 | Msa0853440:CDS | 45.0% | |
| ! | TCCTTAAGCGTTGCATCCTT+AGG | + | chr5_4:45275040-45275059 | None:intergenic | 45.0% |
| ! | CACTGTTATTCGTGCTGATG+AGG | - | chr5_4:45275066-45275085 | Msa0853440:CDS | 45.0% |
| TGCTGATGAGGCTCATCATA+GGG | - | chr5_4:45275078-45275097 | Msa0853440:CDS | 45.0% | |
| CAATGATAACCAACAGGAGC+TGG | + | chr5_4:45275846-45275865 | None:intergenic | 45.0% | |
| AGGGATGATGCTTCACAGAA+TGG | - | chr5_4:45276082-45276101 | Msa0853440:five_prime_UTR | 45.0% | |
| !!! | TTTTATATAAATTTAAAATC+CGG | - | chr5_4:45273887-45273906 | Msa0853440:intron | 5.0% |
| !!! | ATTTTTTAAATATATATCAT+AGG | + | chr5_4:45276243-45276262 | None:intergenic | 5.0% |
| AGGTCGAGGAAGGTTTCATG+TGG | + | chr5_4:45273045-45273064 | None:intergenic | 50.0% | |
| CCAAGAAGAAAGGTCGAGGA+AGG | + | chr5_4:45273055-45273074 | None:intergenic | 50.0% | |
| CCTTCCTCGACCTTTCTTCT+TGG | - | chr5_4:45273052-45273071 | Msa0853440:three_prime_UTR | 50.0% | |
| !! | CCACCGCAGTTTTTCAACAG+CGG | - | chr5_4:45273283-45273302 | Msa0853440:three_prime_UTR | 50.0% |
| GTGCTTGTGGAAGCTTGTAC+TGG | - | chr5_4:45273342-45273361 | Msa0853440:three_prime_UTR | 50.0% | |
| !! | ACGCCGTTGTTTCGAGTTAC+TGG | - | chr5_4:45273450-45273469 | Msa0853440:CDS | 50.0% |
| !! | CGCCGTTGTTTCGAGTTACT+GGG | - | chr5_4:45273451-45273470 | Msa0853440:CDS | 50.0% |
| !! | GCCGTTGTTTCGAGTTACTG+GGG | - | chr5_4:45273452-45273471 | Msa0853440:CDS | 50.0% |
| ! | CGAGTTACTGGGGTATCAGT+AGG | - | chr5_4:45273462-45273481 | Msa0853440:intron | 50.0% |
| GGTAATCCAAAGCCGGACAA+CGG | + | chr5_4:45274417-45274436 | None:intergenic | 50.0% | |
| !! | TTGTCCGGCTTTGGATTACC+AGG | - | chr5_4:45274417-45274436 | Msa0853440:CDS | 50.0% |
| CTGACCTGGTAATCCAAAGC+CGG | + | chr5_4:45274424-45274443 | None:intergenic | 50.0% | |
| TCACGGAAAAAGTCCTGACC+TGG | + | chr5_4:45274438-45274457 | None:intergenic | 50.0% | |
| AGTTTCGTAGAGGCCGAACT+TGG | + | chr5_4:45274548-45274567 | None:intergenic | 50.0% | |
| GAAACAATAGCAGCTGTCCC+TGG | - | chr5_4:45274662-45274681 | Msa0853440:intron | 50.0% | |
| AATAGCAGCTGTCCCTGGAA+TGG | - | chr5_4:45274667-45274686 | Msa0853440:intron | 50.0% | |
| ! | GTGCTGATGAGGCTCATCAT+AGG | - | chr5_4:45275077-45275096 | Msa0853440:CDS | 50.0% |
| !! | GAGCTTTGTTCCGCAGTGGT+GGG | - | chr5_4:45273255-45273274 | Msa0853440:three_prime_UTR | 55.0% |
| CCGCTGTTGAAAAACTGCGG+TGG | + | chr5_4:45273286-45273305 | None:intergenic | 55.0% | |
| CAGCCGAGACAACATCAGCA+TGG | - | chr5_4:45273314-45273333 | Msa0853440:three_prime_UTR | 55.0% | |
| CCGCCATGCTGATGTTGTCT+CGG | + | chr5_4:45273320-45273339 | None:intergenic | 55.0% | |
| CCGAGACAACATCAGCATGG+CGG | - | chr5_4:45273317-45273336 | Msa0853440:three_prime_UTR | 55.0% | |
| AGACAACATCAGCATGGCGG+TGG | - | chr5_4:45273320-45273339 | Msa0853440:three_prime_UTR | 55.0% | |
| ! | GTGGAAGCTTGTACTGGCAG+AGG | - | chr5_4:45273348-45273367 | Msa0853440:three_prime_UTR | 55.0% |
| ! | CTGGGGTATCAGTAGGCCTA+AGG | - | chr5_4:45273469-45273488 | Msa0853440:intron | 55.0% |
| AGGATGGAACTGAGTGGCCA+TGG | - | chr5_4:45273501-45273520 | Msa0853440:intron | 55.0% | |
| GTGGCCATGGAACTGCTTCA+TGG | - | chr5_4:45273514-45273533 | Msa0853440:intron | 55.0% | |
| !! | CGGCTTTGGATTACCAGGTC+AGG | - | chr5_4:45274422-45274441 | Msa0853440:CDS | 55.0% |
| AAAGAGGCTCCAGCTCCTGT+TGG | - | chr5_4:45275834-45275853 | Msa0853440:CDS | 55.0% | |
| !! | GCACGAGCTTTGTTCCGCAG+TGG | - | chr5_4:45273251-45273270 | Msa0853440:three_prime_UTR | 60.0% |
| !! | CGAGCTTTGTTCCGCAGTGG+TGG | - | chr5_4:45273254-45273273 | Msa0853440:three_prime_UTR | 60.0% |
| GGTGGTAGTTCCCACCACTG+CGG | + | chr5_4:45273268-45273287 | None:intergenic | 60.0% | |
| AGCAGCTGTCCCTGGAATGG+TGG | - | chr5_4:45274670-45274689 | Msa0853440:intron | 60.0% | |
| GCAGCTGTCCCTGGAATGGT+GGG | - | chr5_4:45274671-45274690 | Msa0853440:intron | 60.0% | |
| ! | CTGTCCCTGGAATGGTGGGA+GGG | - | chr5_4:45274675-45274694 | Msa0853440:intron | 60.0% |
| GCATCCCTCCCACCATTCCA+GGG | + | chr5_4:45274682-45274701 | None:intergenic | 60.0% | |
| AGCATCCCTCCCACCATTCC+AGG | + | chr5_4:45274683-45274702 | None:intergenic | 60.0% | |
| CAGCATGGCGGTGGTGCTTG+TGG | - | chr5_4:45273329-45273348 | Msa0853440:three_prime_UTR | 65.0% | |
| ! | GCTGTCCCTGGAATGGTGGG+AGG | - | chr5_4:45274674-45274693 | Msa0853440:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 45273000 | 45276280 | 45273000 | ID=Msa0853440;Name=Msa0853440 |
| chr5_4 | mRNA | 45273000 | 45276280 | 45273000 | ID=Msa0853440-mRNA-1;Parent=Msa0853440;Name=Msa0853440-mRNA-1;_AED=0.19;_eAED=0.19;_QI=224|1|1|1|1|1|4|414|329 |
| chr5_4 | exon | 45273000 | 45273473 | 45273000 | ID=Msa0853440-mRNA-1:exon:14290;Parent=Msa0853440-mRNA-1 |
| chr5_4 | exon | 45274160 | 45274648 | 45274160 | ID=Msa0853440-mRNA-1:exon:14289;Parent=Msa0853440-mRNA-1 |
| chr5_4 | exon | 45274976 | 45275104 | 45274976 | ID=Msa0853440-mRNA-1:exon:14288;Parent=Msa0853440-mRNA-1 |
| chr5_4 | exon | 45275745 | 45276280 | 45275745 | ID=Msa0853440-mRNA-1:exon:14287;Parent=Msa0853440-mRNA-1 |
| chr5_4 | five_prime_UTR | 45276057 | 45276280 | 45276057 | ID=Msa0853440-mRNA-1:five_prime_utr;Parent=Msa0853440-mRNA-1 |
| chr5_4 | CDS | 45275745 | 45276056 | 45275745 | ID=Msa0853440-mRNA-1:cds;Parent=Msa0853440-mRNA-1 |
| chr5_4 | CDS | 45274976 | 45275104 | 45274976 | ID=Msa0853440-mRNA-1:cds;Parent=Msa0853440-mRNA-1 |
| chr5_4 | CDS | 45274160 | 45274648 | 45274160 | ID=Msa0853440-mRNA-1:cds;Parent=Msa0853440-mRNA-1 |
| chr5_4 | CDS | 45273414 | 45273473 | 45273414 | ID=Msa0853440-mRNA-1:cds;Parent=Msa0853440-mRNA-1 |
| chr5_4 | three_prime_UTR | 45273000 | 45273413 | 45273000 | ID=Msa0853440-mRNA-1:three_prime_utr;Parent=Msa0853440-mRNA-1 |
| Gene Sequence |
| Protein sequence |
