AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1465960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465960 MtrunA17_Chr3g0132391 100.000 176 0 0 1 176 565 740 4.97e-127 374
Msa1465960 MtrunA17_Chr8g0389131 45.455 176 90 2 1 171 557 731 1.01e-45 159
Msa1465960 MtrunA17_Chr7g0259581 31.667 180 98 6 17 176 634 808 1.18e-22 94.0
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1465960 AT4G09020.1 78.531 177 37 1 1 176 552 728 3.73e-100 305
Msa1465960 AT2G39930.1 45.143 175 90 2 2 171 553 726 4.38e-43 152
Msa1465960 AT2G39930.2 55.769 104 46 0 2 105 553 656 2.54e-33 124
Msa1465960 AT1G03310.2 27.322 183 105 5 17 176 658 835 1.41e-15 73.9
Msa1465960 AT1G03310.1 27.322 183 105 5 17 176 658 835 1.41e-15 73.9
Msa1465960 AT2G39930.3 58.000 50 21 0 2 51 553 602 7.38e-12 63.2

Find 29 sgRNAs with CRISPR-Local

Find 230 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAAGGGCGATCACTTT+AGG 0.274375 tig0045762:+2721 Msa1465960:CDS
TGTTATTTCCGTAGCGAGTA+TGG 0.279104 tig0045762:-2571 Msa1465960:intergenic
TAACATGGCATGAAGACAAT+TGG 0.360246 tig0045762:+2929 Msa1465960:CDS
TTGTAGCACAACGAAGCTAA+TGG 0.370505 tig0045762:+73 None:intergenic
TGTAGCACAACGAAGCTAAT+GGG 0.376583 tig0045762:+74 None:intergenic
GGGAACACCGATGATGCTAA+TGG 0.391733 tig0045762:+2535 Msa1465960:intron
GATGCAATGATAACTTTAGT+TGG 0.408830 tig0045762:+113 Msa1465960:CDS
GGAACACCGATGATGCTAAT+GGG 0.432770 tig0045762:+2536 Msa1465960:CDS
AATGGGGAAGGTGGAAATGA+TGG 0.441846 tig0045762:+91 Msa1465960:CDS
TACGGAAATAACAATAGCTA+TGG 0.465711 tig0045762:+2581 Msa1465960:CDS
TCTAGCATTAATGATATCTC+AGG 0.466140 tig0045762:+1939 Msa1465960:CDS
AACATGGCATGAAGACAATT+GGG 0.484123 tig0045762:+2930 Msa1465960:CDS
GATAACTTTAGTTGGAATTG+TGG 0.498203 tig0045762:+121 Msa1465960:CDS
GTATAAGAGCTCTGCGGTCG+AGG 0.507547 tig0045762:+1899 Msa1465960:CDS
TCAATAGTTGGATGCAAGGA+AGG 0.517959 tig0045762:+2707 Msa1465960:intron
TCTCCAATGCGATAAAGTAC+CGG 0.534057 tig0045762:+2748 Msa1465960:CDS
TTGTTCAATAGTTGGATGCA+AGG 0.561289 tig0045762:+2703 Msa1465960:intron
TTCAGGCTTCATGACAAAAG+TGG 0.563894 tig0045762:+3317 Msa1465960:intron
ATGCCGGTACTTTATCGCAT+TGG 0.570122 tig0045762:-2751 Msa1465960:intergenic
GAATATGGCCATACTCGCTA+CGG 0.579593 tig0045762:+2563 Msa1465960:CDS
AACGAAGCTAATGGGGAAGG+TGG 0.609048 tig0045762:+82 Msa1465960:CDS
CAATAGTTGGATGCAAGGAA+GGG 0.613913 tig0045762:+2708 Msa1465960:intron
ACGGAAATAACAATAGCTAT+GGG 0.614490 tig0045762:+2582 Msa1465960:CDS
CACAACGAAGCTAATGGGGA+AGG 0.616197 tig0045762:+79 Msa1465960:CDS
GAACACCGATGATGCTAATG+GGG 0.616909 tig0045762:+2537 Msa1465960:CDS
GTAGCACAACGAAGCTAATG+GGG 0.632956 tig0045762:+75 None:intergenic
AGGCTTCATGACAAAAGTGG+AGG 0.660645 tig0045762:+3320 Msa1465960:intron
AACACCGATGATGCTAATGG+GGG 0.689567 tig0045762:+2538 Msa1465960:CDS
ATGCTAGTATAAGAGCTCTG+CGG 0.779840 tig0045762:+1893 Msa1465960:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATTTTTTATCTTATTATTCA+AGG + tig0045762:1455-1474 Msa1465960:intron 10.0%
!! AAATATTAAAATTGTACACT+AGG - tig0045762:1490-1509 Msa1465960:intergenic 15.0%
!! TAAAGTTAAAGTATAGATAT+AGG - tig0045762:1736-1755 Msa1465960:intergenic 15.0%
!! AGAAAACTTTAATTGAAATA+TGG + tig0045762:2150-2169 Msa1465960:intron 15.0%
!! TAAAAAACTATATATATTGC+TGG + tig0045762:3251-3270 Msa1465960:intron 15.0%
!!! TTTCTTTTAATTGATTCTGT+AGG + tig0045762:322-341 Msa1465960:intron 20.0%
!! TTACATTAAAGTCTAATTCT+TGG - tig0045762:442-461 Msa1465960:intergenic 20.0%
!!! CATCTATATCTATTTTTTGT+TGG + tig0045762:1025-1044 Msa1465960:intron 20.0%
!! ATATAATTACACTCAATGAA+AGG - tig0045762:1171-1190 Msa1465960:intergenic 20.0%
!! ATTTCTTCAACTATCAATTT+CGG - tig0045762:1420-1439 Msa1465960:intergenic 20.0%
!! CTTAACAAATAATTAAACGT+GGG - tig0045762:1806-1825 Msa1465960:intergenic 20.0%
!! TAACAATCAATTTCAGTAAA+AGG - tig0045762:1845-1864 Msa1465960:intergenic 20.0%
!!! TTCATATTTGAAGTTCATTT+TGG + tig0045762:1962-1981 Msa1465960:intron 20.0%
!!! TTTATCTTTCTGTTGAATTT+TGG - tig0045762:2180-2199 Msa1465960:intergenic 20.0%
!! AGTAGAAAATTTAATGTTAC+TGG + tig0045762:2287-2306 Msa1465960:intron 20.0%
!! GTAGAAAATTTAATGTTACT+GGG + tig0045762:2288-2307 Msa1465960:intron 20.0%
!! TAGAAAATTTAATGTTACTG+GGG + tig0045762:2289-2308 Msa1465960:intron 20.0%
!! AACTATTGAACAAAAAGATT+AGG - tig0045762:2696-2715 Msa1465960:intergenic 20.0%
!!! TAATCTTTTTGTTCAATAGT+TGG + tig0045762:2695-2714 Msa1465960:intron 20.0%
!!! GTAAGTATCCATATTTTAAT+TGG + tig0045762:2984-3003 Msa1465960:intron 20.0%
!! TCTCATTTCCAATTAAAATA+TGG - tig0045762:2995-3014 Msa1465960:intergenic 20.0%
!! TTTCTTCTAATTGATTCTGT+AGG + tig0045762:227-246 Msa1465960:intron 25.0%
!! ATTGATTCTGTAGGAAAATT+AGG + tig0045762:236-255 Msa1465960:intron 25.0%
!! ATTGATTCTGTAGGAAAATT+AGG + tig0045762:236-255 Msa1465960:intron 25.0%
! TTTAAGTAGTGCTTTCTATA+TGG + tig0045762:470-489 Msa1465960:intron 25.0%
! TATAGAAGATGTGTCTAAAT+TGG + tig0045762:845-864 Msa1465960:intron 25.0%
!!! ACTTGAGTCGTTTTTATAAT+TGG - tig0045762:1141-1160 Msa1465960:intergenic 25.0%
! TTGAGTGTAATTATATGTGT+CGG + tig0045762:1175-1194 Msa1465960:intron 25.0%
!!! TGTAAATGTTCTAGAATAGT+CGG - tig0045762:1613-1632 Msa1465960:intergenic 25.0%
!! ATCATAGTTGTATTTTCTGT+CGG - tig0045762:1775-1794 Msa1465960:intergenic 25.0%
! CCTTAACAAATAATTAAACG+TGG - tig0045762:1807-1826 Msa1465960:intergenic 25.0%
!! CCACGTTTAATTATTTGTTA+AGG + tig0045762:1804-1823 Msa1465960:intron 25.0%
! AGAAAATTTAATGTTACTGG+GGG + tig0045762:2290-2309 Msa1465960:intron 25.0%
! CTGCAATGTAGTTAAAAAAA+AGG - tig0045762:2362-2381 Msa1465960:intergenic 25.0%
!!! TTTTAACTACATTGCAGTTT+AGG + tig0045762:2365-2384 Msa1465960:intron 25.0%
!!! CTTCAAGTTTTCTTTTGAAA+AGG - tig0045762:2431-2450 Msa1465960:intergenic 25.0%
!!! AAATTTTGTTATGATTGACC+AGG + tig0045762:2514-2533 Msa1465960:intron 25.0%
!!! AATTTTGTTATGATTGACCA+GGG + tig0045762:2515-2534 Msa1465960:intron 25.0%
!!! TGCCATTAATTTTTTCTTGT+GGG + tig0045762:2613-2632 Msa1465960:CDS 25.0%
! ATCCCACAAGAAAAAATTAA+TGG - tig0045762:2618-2637 Msa1465960:intergenic 25.0%
! TAAATTTATAACATCCCTCT+TGG + tig0045762:2642-2661 Msa1465960:intron 25.0%
!!! TTCCTTTTTTGATGGAAAAA+TGG - tig0045762:2860-2879 Msa1465960:intergenic 25.0%
!! TTTTGCAGAATGAAATAACA+TGG + tig0045762:2914-2933 Msa1465960:intron 25.0%
! GATGTTCAAAAAAGAAATCT+TGG + tig0045762:3182-3201 Msa1465960:intron 25.0%
! ACTATATATATTGCTGGTAA+TGG + tig0045762:3257-3276 Msa1465960:intron 25.0%
GATGCAATGATAACTTTAGT+TGG + tig0045762:113-132 Msa1465960:CDS 30.0%
GATAACTTTAGTTGGAATTG+TGG + tig0045762:121-140 Msa1465960:CDS 30.0%
!! TTGCAATGCTTTATTTACGA+TGG + tig0045762:164-183 Msa1465960:intron 30.0%
!! TGCAATGCTTTATTTACGAT+GGG + tig0045762:165-184 Msa1465960:intron 30.0%
!! TTGCAATGCTTTATTTACGA+TGG + tig0045762:164-183 Msa1465960:intron 30.0%
!! TGCAATGCTTTATTTACGAT+GGG + tig0045762:165-184 Msa1465960:intron 30.0%
!! ATCACTGATTTCTCTGATAA+GGG - tig0045762:372-391 Msa1465960:intergenic 30.0%
!! TATCACTGATTTCTCTGATA+AGG - tig0045762:373-392 Msa1465960:intergenic 30.0%
AAAGTCTAATTCTTGGATCA+AGG - tig0045762:435-454 Msa1465960:intergenic 30.0%
ATGGATAAAACTACACGTAA+TGG + tig0045762:772-791 Msa1465960:intron 30.0%
!! ATTGTTAGGCTGATTTTTGA+AGG + tig0045762:801-820 Msa1465960:intron 30.0%
TTTGAAGGCAAAGGAAAATA+TGG + tig0045762:816-835 Msa1465960:intron 30.0%
TTGAAGGCAAAGGAAAATAT+GGG + tig0045762:817-836 Msa1465960:intron 30.0%
AAGTTCATTTCCATTCACAA+AGG + tig0045762:1105-1124 Msa1465960:intron 30.0%
TAACTGAATGTAACAGATTC+TGG + tig0045762:1544-1563 Msa1465960:intron 30.0%
! CACTAAGCAGTTTTTATATG+CGG - tig0045762:1643-1662 Msa1465960:intergenic 30.0%
! CATGTTTAATTTCCAGAATG+CGG + tig0045762:1701-1720 Msa1465960:intron 30.0%
AAGTATAGATATAGGTTCCA+AGG - tig0045762:1728-1747 Msa1465960:intergenic 30.0%
AAATAATTAAACGTGGGTGA+AGG - tig0045762:1800-1819 Msa1465960:intergenic 30.0%
TCTAGCATTAATGATATCTC+AGG + tig0045762:1939-1958 Msa1465960:CDS 30.0%
!! ATTTACTCACTTTTGCTATG+AGG - tig0045762:2128-2147 Msa1465960:intergenic 30.0%
TTCTTTCTCATCTTAATTGC+TGG + tig0045762:2237-2256 Msa1465960:intron 30.0%
TGTCAAGGTTCAAAGTTTAA+TGG + tig0045762:2318-2337 Msa1465960:intron 30.0%
TACGGAAATAACAATAGCTA+TGG + tig0045762:2581-2600 Msa1465960:CDS 30.0%
ACGGAAATAACAATAGCTAT+GGG + tig0045762:2582-2601 Msa1465960:CDS 30.0%
!!! CTGCCATTAATTTTTTCTTG+TGG + tig0045762:2612-2631 Msa1465960:CDS 30.0%
!!! TAATTTTTTCTTGTGGGATC+AGG + tig0045762:2619-2638 Msa1465960:CDS 30.0%
! TCATGAAAATTTTCTCAGTG+AGG + tig0045762:2791-2810 Msa1465960:CDS 30.0%
!!! TGCCATTTTTCCATCAAAAA+AGG + tig0045762:2855-2874 Msa1465960:intron 30.0%
!!! CAGTGTTTTTCCTTTTTTGA+TGG - tig0045762:2868-2887 Msa1465960:intergenic 30.0%
ATAAGGTGGATGTTCAATAA+AGG + tig0045762:3107-3126 Msa1465960:intron 30.0%
! AAACCACTTTCTTTTTGTTG+GGG - tig0045762:3405-3424 Msa1465960:intergenic 30.0%
! GAAACCACTTTCTTTTTGTT+GGG - tig0045762:3406-3425 Msa1465960:intergenic 30.0%
!!! AGTTGGAATTGTGGTTTTGA+AGG + tig0045762:130-149 Msa1465960:CDS 35.0%
TATATGGTATCAGCATTCCT+AGG + tig0045762:486-505 Msa1465960:intron 35.0%
AGAACAAACTCAATGACCAA+AGG + tig0045762:591-610 Msa1465960:intron 35.0%
CGTAATGGTCTCAAATTGTT+AGG + tig0045762:787-806 Msa1465960:intron 35.0%
TTCCATACAGTTCATTAACC+AGG - tig0045762:917-936 Msa1465960:intergenic 35.0%
TCAAAGTGCACAACTCTTAA+CGG - tig0045762:1053-1072 Msa1465960:intergenic 35.0%
! AACTTGAAGACTGTTTCTCT+TGG - tig0045762:1090-1109 Msa1465960:intergenic 35.0%
TCTAGTTGTTCCTTTGTGAA+TGG - tig0045762:1118-1137 Msa1465960:intergenic 35.0%
! GTAATTATATGTGTCGGTGT+CGG + tig0045762:1181-1200 Msa1465960:intron 35.0%
! TTTTTCGTAACACATGTCGA+TGG + tig0045762:1369-1388 Msa1465960:intron 35.0%
ATGGTATCAAAGCTTGATCA+AGG - tig0045762:1395-1414 Msa1465960:intergenic 35.0%
TCAACTATCAATTTCGGTCA+TGG - tig0045762:1414-1433 Msa1465960:intergenic 35.0%
TTGCTTATGCTTGCTTACAT+CGG - tig0045762:1677-1696 Msa1465960:intergenic 35.0%
CAGATAGTAATAGTTGAAGG+GGG - tig0045762:2031-2050 Msa1465960:intergenic 35.0%
CCAGATAGTAATAGTTGAAG+GGG - tig0045762:2032-2051 Msa1465960:intergenic 35.0%
GCCAGATAGTAATAGTTGAA+GGG - tig0045762:2033-2052 Msa1465960:intergenic 35.0%
TGCCAGATAGTAATAGTTGA+AGG - tig0045762:2034-2053 Msa1465960:intergenic 35.0%
! GAGAAAGAAACTCTGAAAGT+TGG - tig0045762:2226-2245 Msa1465960:intergenic 35.0%
TTTCTCATCTTAATTGCTGG+TGG + tig0045762:2240-2259 Msa1465960:intron 35.0%
GCAGCATGTATGATAACAAA+TGG - tig0045762:2470-2489 Msa1465960:intergenic 35.0%
AGCTTATTGGGGATTATTTC+TGG + tig0045762:2666-2685 Msa1465960:intron 35.0%
TTGTTCAATAGTTGGATGCA+AGG + tig0045762:2703-2722 Msa1465960:intron 35.0%
! TCAATGTTTTATGTGCATGC+CGG - tig0045762:2770-2789 Msa1465960:intergenic 35.0%
TAACATGGCATGAAGACAAT+TGG + tig0045762:2929-2948 Msa1465960:CDS 35.0%
AACATGGCATGAAGACAATT+GGG + tig0045762:2930-2949 Msa1465960:CDS 35.0%
GTTGTCTCAAGATAGTGTTT+AGG - tig0045762:3063-3082 Msa1465960:intergenic 35.0%
!!! TCATGGAGTTTTGGGTAATA+AGG + tig0045762:3090-3109 Msa1465960:intron 35.0%
!! TATATTGCTGGTAATGGAGT+CGG + tig0045762:3263-3282 Msa1465960:intron 35.0%
! AACCACTTTCTTTTTGTTGG+GGG - tig0045762:3404-3423 Msa1465960:intergenic 35.0%
! CGAAACCACTTTCTTTTTGT+TGG - tig0045762:3407-3426 Msa1465960:intergenic 35.0%
! ATTCTTGGATCAAGGAGTGT+CGG - tig0045762:427-446 Msa1465960:intergenic 40.0%
! GGTCATTGAGTTTGTTCTGT+TGG - tig0045762:589-608 Msa1465960:intergenic 40.0%
GAGACTCTAACGATTGTAGA+CGG + tig0045762:622-641 Msa1465960:intron 40.0%
GAAGATCAAGTTTCGGTTTC+CGG - tig0045762:701-720 Msa1465960:intergenic 40.0%
AGGCATGGAAGATCAAGTTT+CGG - tig0045762:708-727 Msa1465960:intergenic 40.0%
!! AGGCTGATTTTTGAAGGCAA+AGG + tig0045762:807-826 Msa1465960:intron 40.0%
GTGTCTAAATTGGAAAGCCA+TGG + tig0045762:855-874 Msa1465960:intron 40.0%
CAATGGTCAAGGAGTAACAA+GGG - tig0045762:894-913 Msa1465960:intergenic 40.0%
ACAGTTCATTAACCAGGCAA+TGG - tig0045762:911-930 Msa1465960:intergenic 40.0%
TGCCTGGTTAATGAACTGTA+TGG + tig0045762:912-931 Msa1465960:intron 40.0%
TTCTTAGGCAGGAAAACGAA+GGG - tig0045762:955-974 Msa1465960:intergenic 40.0%
TCCAGCTTCTGAATCTTCTT+AGG - tig0045762:970-989 Msa1465960:intergenic 40.0%
! AGACTGTTTCTCTTGGTTAG+AGG - tig0045762:1083-1102 Msa1465960:intergenic 40.0%
GAGTTCATAACCGTTTGCAT+TGG + tig0045762:1259-1278 Msa1465960:intron 40.0%
! TTTTCTGTCGGTCACTATTC+TGG - tig0045762:1763-1782 Msa1465960:intergenic 40.0%
TTGTTATCTGTCTGTCTGAC+AGG + tig0045762:1859-1878 Msa1465960:intron 40.0%
ATGCTAGTATAAGAGCTCTG+CGG + tig0045762:1893-1912 Msa1465960:CDS 40.0%
CCCCTTCAACTATTACTATC+TGG + tig0045762:2029-2048 Msa1465960:intron 40.0%
ATGCTAATGGGGGATGAATA+TGG + tig0045762:2548-2567 Msa1465960:CDS 40.0%
!! TGTTATTTCCGTAGCGAGTA+TGG - tig0045762:2574-2593 Msa1465960:intergenic 40.0%
! ATCCCTCTTGGTAGCTTATT+GGG + tig0045762:2654-2673 Msa1465960:intron 40.0%
TCAATAGTTGGATGCAAGGA+AGG + tig0045762:2707-2726 Msa1465960:intron 40.0%
CAATAGTTGGATGCAAGGAA+GGG + tig0045762:2708-2727 Msa1465960:intron 40.0%
TCTCCAATGCGATAAAGTAC+CGG + tig0045762:2748-2767 Msa1465960:CDS 40.0%
AACACTGCCAAATGTGCTAA+TGG + tig0045762:2881-2900 Msa1465960:intron 40.0%
AGCTGTTCCATTAGCACATT+TGG - tig0045762:2891-2910 Msa1465960:intergenic 40.0%
ACTATCTTGAGACAACATCG+TGG + tig0045762:3067-3086 Msa1465960:intron 40.0%
!!! TGGAGTTTTGGGTAATAAGG+TGG + tig0045762:3093-3112 Msa1465960:intron 40.0%
AGGTGGATGTTCAATAAAGG+TGG + tig0045762:3110-3129 Msa1465960:intron 40.0%
TGTGTTGCACATATGCATTC+AGG + tig0045762:3300-3319 Msa1465960:intron 40.0%
TTCAGGCTTCATGACAAAAG+TGG + tig0045762:3317-3336 Msa1465960:intron 40.0%
! TTTCTTTTTGTTGGGGGAGT+GGG - tig0045762:3398-3417 Msa1465960:intergenic 40.0%
AATGGGGAAGGTGGAAATGA+TGG + tig0045762:91-110 Msa1465960:CDS 45.0%
!! TTCTTGGATCAAGGAGTGTC+GGG - tig0045762:426-445 Msa1465960:intergenic 45.0%
ATTCCTAGGTTCACCGATCT+AGG + tig0045762:500-519 Msa1465960:intron 45.0%
ATTCCTAGATCGGTGAACCT+AGG - tig0045762:506-525 Msa1465960:intergenic 45.0%
! ATGTGGAAGCATGCTCTTAC+CGG + tig0045762:558-577 Msa1465960:intron 45.0%
AATCGTTAGAGTCTCCGATG+CGG - tig0045762:617-636 Msa1465960:intergenic 45.0%
CTTGATCTTCCATGCCTTGT+TGG + tig0045762:711-730 Msa1465960:intron 45.0%
TTGGAGAAACCAACAAGGCA+TGG - tig0045762:723-742 Msa1465960:intergenic 45.0%
!! AACATTGACTTGGAGCGAGT+TGG - tig0045762:742-761 Msa1465960:intergenic 45.0%
! TGAGTCGCTGAACATTGACT+TGG - tig0045762:752-771 Msa1465960:intergenic 45.0%
GTCAATGTTCAGCGACTCAA+TGG + tig0045762:753-772 Msa1465960:intron 45.0%
TTGGAAAGCCATGGTGACAA+CGG + tig0045762:864-883 Msa1465960:intron 45.0%
GCAATGGTCAAGGAGTAACA+AGG - tig0045762:895-914 Msa1465960:intergenic 45.0%
CATTAACCAGGCAATGGTCA+AGG - tig0045762:905-924 Msa1465960:intergenic 45.0%
CTTCTTAGGCAGGAAAACGA+AGG - tig0045762:956-975 Msa1465960:intergenic 45.0%
GCTTCTGAATCTTCTTAGGC+AGG - tig0045762:966-985 Msa1465960:intergenic 45.0%
GCCTAAGAAGATTCAGAAGC+TGG + tig0045762:966-985 Msa1465960:intron 45.0%
CACTGACACGTTTAAGAGAG+TGG + tig0045762:1205-1224 Msa1465960:intron 45.0%
CTTACGACTGCCAATGCAAA+CGG - tig0045762:1272-1291 Msa1465960:intergenic 45.0%
AGTCGTAAGTCGAGTGGAAA+TGG + tig0045762:1283-1302 Msa1465960:intron 45.0%
TTGGAGTGGCCAAGAAGTAA+TGG + tig0045762:1311-1330 Msa1465960:intron 45.0%
TGGAGTGGCCAAGAAGTAAT+GGG + tig0045762:1312-1331 Msa1465960:intron 45.0%
! GAAGGTGTGAGAAACTGAAG+AGG + tig0045762:1343-1362 Msa1465960:intron 45.0%
!! ATGCTTGCTTACATCGGTTC+AGG - tig0045762:1671-1690 Msa1465960:intergenic 45.0%
AATTTCCAGAATGCGGACCT+TGG + tig0045762:1708-1727 Msa1465960:intron 45.0%
GCCAAAATTGAGACCACACT+GGG - tig0045762:2062-2081 Msa1465960:intergenic 45.0%
TGCCAAAATTGAGACCACAC+TGG - tig0045762:2063-2082 Msa1465960:intergenic 45.0%
GGAACACCGATGATGCTAAT+GGG + tig0045762:2536-2555 Msa1465960:CDS 45.0%
GAACACCGATGATGCTAATG+GGG + tig0045762:2537-2556 Msa1465960:CDS 45.0%
AACACCGATGATGCTAATGG+GGG + tig0045762:2538-2557 Msa1465960:CDS 45.0%
TCATCCCCCATTAGCATCAT+CGG - tig0045762:2545-2564 Msa1465960:intergenic 45.0%
GAATATGGCCATACTCGCTA+CGG + tig0045762:2563-2582 Msa1465960:CDS 45.0%
! CATCCCTCTTGGTAGCTTAT+TGG + tig0045762:2653-2672 Msa1465960:intron 45.0%
! TCCCTCTTGGTAGCTTATTG+GGG + tig0045762:2655-2674 Msa1465960:intron 45.0%
TCCCCAATAAGCTACCAAGA+GGG - tig0045762:2659-2678 Msa1465960:intergenic 45.0%
ATCCCCAATAAGCTACCAAG+AGG - tig0045762:2660-2679 Msa1465960:intergenic 45.0%
ATGCCGGTACTTTATCGCAT+TGG - tig0045762:2754-2773 Msa1465960:intergenic 45.0%
TTGAGACAACATCGTGGTCA+TGG + tig0045762:3073-3092 Msa1465960:intron 45.0%
! ACATCGTGGTCATGGAGTTT+TGG + tig0045762:3081-3100 Msa1465960:intron 45.0%
! CATCGTGGTCATGGAGTTTT+GGG + tig0045762:3082-3101 Msa1465960:intron 45.0%
TAGTGTGTTACGTCAGTGGA+AGG - tig0045762:3146-3165 Msa1465960:intergenic 45.0%
! CTGATAGTGTGTTACGTCAG+TGG - tig0045762:3150-3169 Msa1465960:intergenic 45.0%
AGGCTTCATGACAAAAGTGG+AGG + tig0045762:3320-3339 Msa1465960:intron 45.0%
! CTTTCTTTTTGTTGGGGGAG+TGG - tig0045762:3399-3418 Msa1465960:intergenic 45.0%
CTCCCCCAACAAAAAGAAAG+TGG + tig0045762:3399-3418 Msa1465960:CDS 45.0%
!! TAAAAAATAAACAAAATAAA+TGG - tig0045762:402-421 Msa1465960:intergenic 5.0%
CACAACGAAGCTAATGGGGA+AGG + tig0045762:79-98 Msa1465960:CDS 50.0%
AACGAAGCTAATGGGGAAGG+TGG + tig0045762:82-101 Msa1465960:CDS 50.0%
GAGGGAGGGAATTCCTAGAT+CGG - tig0045762:516-535 Msa1465960:intergenic 50.0%
ATTCCCTCCCTCTTCACTCA+TGG + tig0045762:524-543 Msa1465960:intron 50.0%
TCAATGACCAAAGGCCGCAT+CGG + tig0045762:600-619 Msa1465960:intron 50.0%
AACGATTGTAGACGGCAGCA+TGG + tig0045762:630-649 Msa1465960:intron 50.0%
ACGATTGTAGACGGCAGCAT+GGG + tig0045762:631-650 Msa1465960:intron 50.0%
! GCGAGTTGGAGAAACCAACA+AGG - tig0045762:728-747 Msa1465960:intergenic 50.0%
TGGAAAGCCATGGTGACAAC+GGG + tig0045762:865-884 Msa1465960:intron 50.0%
GTTACTCCTTGACCATTGCC+TGG + tig0045762:896-915 Msa1465960:intron 50.0%
TACCCCTTCAATCAGAAGCG+TGG + tig0045762:1229-1248 Msa1465960:intron 50.0%
CACCACGCTTCTGATTGAAG+GGG - tig0045762:1234-1253 Msa1465960:intergenic 50.0%
GCACCACGCTTCTGATTGAA+GGG - tig0045762:1235-1254 Msa1465960:intergenic 50.0%
AGCACCACGCTTCTGATTGA+AGG - tig0045762:1236-1255 Msa1465960:intergenic 50.0%
ATTGGCAGTCGTAAGTCGAG+TGG + tig0045762:1277-1296 Msa1465960:intron 50.0%
TCGAGTGGAAATGGCTGTGT+TGG + tig0045762:1292-1311 Msa1465960:intron 50.0%
TGGAAATGGCTGTGTTGGAG+TGG + tig0045762:1297-1316 Msa1465960:intron 50.0%
GCACTCTGCCCATTACTTCT+TGG - tig0045762:1323-1342 Msa1465960:intergenic 50.0%
!! AAGTAATGGGCAGAGTGCGA+AGG + tig0045762:1325-1344 Msa1465960:intron 50.0%
! GGCAAGAGACTAGCTGACTT+AGG + tig0045762:1565-1584 Msa1465960:intron 50.0%
ATCTGGCAAATAGCCCAGTG+TGG + tig0045762:2046-2065 Msa1465960:intron 50.0%
! GCCCAGTGTGGTCTCAATTT+TGG + tig0045762:2058-2077 Msa1465960:intron 50.0%
TTACTGGGGGCTATGTGTCA+AGG + tig0045762:2303-2322 Msa1465960:intron 50.0%
! TTAGCATCATCGGTGTTCCC+TGG - tig0045762:2535-2554 Msa1465960:intergenic 50.0%
GGGAACACCGATGATGCTAA+TGG + tig0045762:2535-2554 Msa1465960:intron 50.0%
CAAGGAAGGGCGATCACTTT+AGG + tig0045762:2721-2740 Msa1465960:CDS 50.0%
GTGCCATGAGTGAAGAGGGA+GGG - tig0045762:530-549 Msa1465960:intergenic 55.0%
GTGCGTGCCATGAGTGAAGA+GGG - tig0045762:534-553 Msa1465960:intergenic 55.0%
TGTGCGTGCCATGAGTGAAG+AGG - tig0045762:535-554 Msa1465960:intergenic 55.0%
TCATGGCACGCACAGACATG+TGG + tig0045762:541-560 Msa1465960:intron 55.0%
GAAGCATGCTCTTACCGGCA+CGG + tig0045762:563-582 Msa1465960:intron 55.0%
GTTTGTTCTGTTGGCCGTGC+CGG - tig0045762:580-599 Msa1465960:intergenic 55.0%
AGGGATACCCGTTGTCACCA+TGG - tig0045762:875-894 Msa1465960:intergenic 55.0%
AGGTTCCAAGGTCCGCATTC+TGG - tig0045762:1716-1735 Msa1465960:intergenic 55.0%
GTATAAGAGCTCTGCGGTCG+AGG + tig0045762:1899-1918 Msa1465960:CDS 55.0%
CGTGCCATGAGTGAAGAGGG+AGG - tig0045762:531-550 Msa1465960:intergenic 60.0%
AGAGTCTCCGATGCGGCCTT+TGG - tig0045762:610-629 Msa1465960:intergenic 60.0%
TAGACGGCAGCATGGGAGCC+AGG + tig0045762:638-657 Msa1465960:intron 65.0%
AGCATGGGAGCCAGGAGGCA+AGG + tig0045762:646-665 Msa1465960:intron 65.0%
TGTGCTGCAGCCTTGCCTCC+TGG - tig0045762:659-678 Msa1465960:intergenic 65.0%
AGGAGGCAAGGCTGCAGCAC+AGG + tig0045762:658-677 Msa1465960:intron 65.0%
GGCAGTGCAGGCTGCACAAC+CGG + tig0045762:679-698 Msa1465960:intron 65.0%
ACGGCAGCATGGGAGCCAGG+AGG + tig0045762:641-660 Msa1465960:intron 70.0%
GGCTGCAGCACAGGCAGTGC+AGG + tig0045762:667-686 Msa1465960:intron 70.0%
Chromosome Type Strat End Strand Name
tig0045762 gene 79 3430 79 ID=Msa1465960;Name=Msa1465960
tig0045762 mRNA 79 3430 79 ID=Msa1465960-mRNA-1;Parent=Msa1465960;Name=Msa1465960-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|0.66|1|1|1|6|0|176
tig0045762 exon 79 151 79 ID=Msa1465960-mRNA-1:exon:24937;Parent=Msa1465960-mRNA-1
tig0045762 exon 1881 1960 1881 ID=Msa1465960-mRNA-1:exon:24938;Parent=Msa1465960-mRNA-1
tig0045762 exon 2536 2640 2536 ID=Msa1465960-mRNA-1:exon:24939;Parent=Msa1465960-mRNA-1
tig0045762 exon 2714 2812 2714 ID=Msa1465960-mRNA-1:exon:24940;Parent=Msa1465960-mRNA-1
tig0045762 exon 2922 2983 2922 ID=Msa1465960-mRNA-1:exon:24941;Parent=Msa1465960-mRNA-1
tig0045762 exon 3322 3430 3322 ID=Msa1465960-mRNA-1:exon:24942;Parent=Msa1465960-mRNA-1
tig0045762 CDS 79 151 79 ID=Msa1465960-mRNA-1:cds;Parent=Msa1465960-mRNA-1
tig0045762 CDS 1881 1960 1881 ID=Msa1465960-mRNA-1:cds;Parent=Msa1465960-mRNA-1
tig0045762 CDS 2536 2640 2536 ID=Msa1465960-mRNA-1:cds;Parent=Msa1465960-mRNA-1
tig0045762 CDS 2714 2812 2714 ID=Msa1465960-mRNA-1:cds;Parent=Msa1465960-mRNA-1
tig0045762 CDS 2922 2983 2922 ID=Msa1465960-mRNA-1:cds;Parent=Msa1465960-mRNA-1
tig0045762 CDS 3322 3430 3322 ID=Msa1465960-mRNA-1:cds;Parent=Msa1465960-mRNA-1
Gene Sequence

>Msa1465960

CACAACGAAGCTAATGGGGAAGGTGGAAATGATGGATGCAATGATAACTTTAGTTGGAATTGTGGTTTTGAAGGTGAAACTGATGATGCTAGTATAAGAGCTCTGCGGTCGAGGCAAATGAAGAACTTTCATCTAGCATTAATGATATCTCAGGGAACACCGATGATGCTAATGGGGGATGAATATGGCCATACTCGCTACGGAAATAACAATAGCTATGGGCATGATTCTGCCATTAATTTTTTCTTGTGGGATCAGTTGGATGCAAGGAAGGGCGATCACTTTAGGTTTTTCTCCAATGCGATAAAGTACCGGCATGCACATAAAACATTGAGTCATGAAAATTTTCTCAGTGAGAATGAAATAACATGGCATGAAGACAATTGGGACAATTACGAAAGCAAATTTCTTGCATTTACGCTTCATGACAAAAGTGGAGGAGATATCTATTTAGCTTTTAATGCTCATGACTACTTTTTGAAAGCTCTTCTGCCCACTCCCCCAACAAAAAGAAAGTGGTTTCGTGTG

Protein sequence

>Msa1465960

HNEANGEGGNDGCNDNFSWNCGFEGETDDASIRALRSRQMKNFHLALMISQGTPMMLMGDEYGHTRYGNNNSYGHDSAINFFLWDQLDARKGDHFRFFSNAIKYRHAHKTLSHENFLSENEITWHEDNWDNYESKFLAFTLHDKSGGDIYLAFNAHDYFLKALLPTPPTKRKWFRV