Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592720 | XP_039689235.1 | 98.206 | 223 | 4 | 0 | 1 | 223 | 1 | 223 | 4.42e-158 | 446 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592720 | sp|P54168|YPGQ_BACSU | 36.715 | 207 | 99 | 6 | 14 | 215 | 14 | 193 | 4.06e-28 | 108 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592720 | G7JDD3 | 98.206 | 223 | 4 | 0 | 1 | 223 | 64 | 286 | 6.73e-158 | 447 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0013050 | Msa0592720 | -0.816625 | 5.020646e-52 | -8.615850e-47 |
| Msa0032610 | Msa0592720 | 0.804034 | 2.622248e-49 | -8.615850e-47 |
| Msa0036160 | Msa0592720 | 0.808935 | 2.425522e-50 | -8.615850e-47 |
| Msa0119850 | Msa0592720 | 0.825876 | 3.691348e-54 | -8.615850e-47 |
| Msa0372340 | Msa0592720 | 0.824212 | 9.121077e-54 | -8.615850e-47 |
| Msa0379410 | Msa0592720 | 0.857561 | 1.501197e-62 | -8.615850e-47 |
| Msa0380040 | Msa0592720 | 0.828646 | 8.009655e-55 | -8.615850e-47 |
| Msa0397540 | Msa0592720 | 0.800833 | 1.197294e-48 | -8.615850e-47 |
| Msa0429290 | Msa0592720 | 0.826266 | 2.981426e-54 | -8.615850e-47 |
| Msa0442200 | Msa0592720 | 0.801789 | 7.629794e-49 | -8.615850e-47 |
| Msa0446580 | Msa0592720 | 0.803159 | 3.981769e-49 | -8.615850e-47 |
| Msa0468130 | Msa0592720 | 0.806096 | 9.712372e-50 | -8.615850e-47 |
| Msa0475580 | Msa0592720 | 0.823683 | 1.213952e-53 | -8.615850e-47 |
| Msa0358170 | Msa0592720 | 0.816127 | 6.490621e-52 | -8.615850e-47 |
| Msa0504450 | Msa0592720 | 0.819845 | 9.376493e-53 | -8.615850e-47 |
| Msa0519220 | Msa0592720 | 0.841246 | 5.336972e-58 | -8.615850e-47 |
| Msa0536650 | Msa0592720 | 0.939694 | 8.260447e-100 | -8.615850e-47 |
| Msa0553220 | Msa0592720 | -0.800811 | 1.209786e-48 | -8.615850e-47 |
| Msa0592720 | Msa0618010 | 0.802658 | 5.054437e-49 | -8.615850e-47 |
| Msa0592720 | Msa0632870 | 0.885603 | 7.049616e-72 | -8.615850e-47 |
| Msa0592720 | Msa0660490 | 0.801920 | 7.170709e-49 | -8.615850e-47 |
| Msa0592720 | Msa0671740 | 0.938922 | 3.011965e-99 | -8.615850e-47 |
| Msa0592720 | Msa0715650 | 0.800672 | 1.291336e-48 | -8.615850e-47 |
| Msa0592720 | Msa0772480 | 0.809371 | 1.956076e-50 | -8.615850e-47 |
| Msa0592720 | Msa0784860 | 0.855384 | 6.540349e-62 | -8.615850e-47 |
| Msa0592720 | Msa0795920 | 0.808289 | 3.331474e-50 | -8.615850e-47 |
| Msa0592720 | Msa0798440 | 0.818128 | 2.304422e-52 | -8.615850e-47 |
| Msa0592720 | Msa0842210 | 0.806681 | 7.310978e-50 | -8.615850e-47 |
| Msa0592720 | Msa0870150 | 0.832355 | 9.908774e-56 | -8.615850e-47 |
| Msa0592720 | Msa0933290 | 0.831701 | 1.438018e-55 | -8.615850e-47 |
| Msa0592720 | Msa0935850 | 0.811072 | 8.405322e-51 | -8.615850e-47 |
| Msa0592720 | Msa0956410 | 0.805845 | 1.096514e-49 | -8.615850e-47 |
| Msa0592720 | Msa1012830 | 0.815352 | 9.661130e-52 | -8.615850e-47 |
| Msa0592720 | Msa1051200 | 0.816905 | 4.345433e-52 | -8.615850e-47 |
| Msa0592720 | Msa1137700 | 0.814892 | 1.222013e-51 | -8.615850e-47 |
| Msa0592720 | Msa1143930 | -0.800229 | 1.589514e-48 | -8.615850e-47 |
| Msa0592720 | Msa1171870 | 0.807447 | 5.033221e-50 | -8.615850e-47 |
| Msa0592720 | Msa1174870 | 0.803528 | 3.339736e-49 | -8.615850e-47 |
| Msa0592720 | Msa1212760 | 0.809475 | 1.858302e-50 | -8.615850e-47 |
| Msa0592720 | Msa1224810 | 0.805838 | 1.100271e-49 | -8.615850e-47 |
| Msa0592720 | Msa1234690 | 0.801535 | 8.600855e-49 | -8.615850e-47 |
| Msa0592720 | Msa1234730 | 0.811610 | 6.422621e-51 | -8.615850e-47 |
| Msa0592720 | Msa1260130 | 0.864828 | 9.183827e-65 | -8.615850e-47 |
| Msa0592720 | Msa1262920 | 0.822047 | 2.919029e-53 | -8.615850e-47 |
| Msa0592720 | Msa1300050 | 0.854864 | 9.264123e-62 | -8.615850e-47 |
| Msa0592720 | Msa1302100 | 0.829430 | 5.169582e-55 | -8.615850e-47 |
| Msa0592720 | Msa1302190 | -0.812836 | 3.469260e-51 | -8.615850e-47 |
| Msa0592720 | Msa1315110 | 0.814309 | 1.644831e-51 | -8.615850e-47 |
| Msa0592720 | Msa1387200 | 0.803206 | 3.894249e-49 | -8.615850e-47 |
| Msa0592720 | Msa1453620 | 0.804312 | 2.294375e-49 | -8.615850e-47 |
| Msa0592720 | Msa1465960 | 0.841786 | 3.847816e-58 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592720 | MtrunA17_Chr4g0010791 | 98.206 | 223 | 4 | 0 | 1 | 223 | 64 | 286 | 1.30e-161 | 447 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0592720 | AT1G17330.1 | 77.523 | 218 | 49 | 0 | 6 | 223 | 5 | 222 | 3.73e-121 | 343 |
Find 77 sgRNAs with CRISPR-Local
Find 193 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAGGAGCTTCTCATGAAAA+TGG | 0.305518 | 4_2:+18231620 | None:intergenic |
| CGAGCAAGGTGTGCTGTTGC+AGG | 0.313780 | 4_2:-18233390 | Msa0592720:five_prime_UTR |
| TTTGAAGATCATCAAAGAAA+TGG | 0.317424 | 4_2:-18232652 | Msa0592720:CDS |
| GCCAAGATCTGATCTATCTA+AGG | 0.320518 | 4_2:-18231680 | Msa0592720:CDS |
| GTTCCCATCTTGTAAGTTGC+AGG | 0.325616 | 4_2:-18231194 | Msa0592720:three_prime_UTR |
| ACTGAACGGAGTCCAGAATT+TGG | 0.354191 | 4_2:-18231967 | Msa0592720:CDS |
| CTCATGATGCGGCACATGTT+TGG | 0.359860 | 4_2:-18233278 | Msa0592720:CDS |
| TCTTGGACAACACCAAATTC+TGG | 0.364335 | 4_2:+18231955 | None:intergenic |
| CTTGATGCTATTGGTGCTAT+AGG | 0.384019 | 4_2:-18231922 | Msa0592720:intron |
| TGGGAAAGGTGTGCTGTTGC+AGG | 0.392172 | 4_2:-18233441 | Msa0592720:five_prime_UTR |
| GCTGCACTGCTCCATGATAT+AGG | 0.400352 | 4_2:-18233086 | Msa0592720:intron |
| TCCTTAGATAGATCAGATCT+TGG | 0.401064 | 4_2:+18231679 | None:intergenic |
| TTGGAGCATGAAGCATGAAT+TGG | 0.401195 | 4_2:+18231162 | None:intergenic |
| CTCTCCCTTGCCACCGAGGA+AGG | 0.423845 | 4_2:-18233237 | Msa0592720:CDS |
| ATAGTTGCTTACCTATATCA+TGG | 0.428518 | 4_2:+18233075 | None:intergenic |
| TTGAAGATCATCAAAGAAAT+GGG | 0.433662 | 4_2:-18232651 | Msa0592720:intron |
| AAAGAGGAGGTGACGGGAAA+AGG | 0.434863 | 4_2:-18231994 | Msa0592720:CDS |
| CATCAAGCCTATCAGCATCT+TGG | 0.454662 | 4_2:+18231938 | None:intergenic |
| ATTGCACGTTGCTTCACATT+CGG | 0.458789 | 4_2:-18231742 | Msa0592720:CDS |
| GGAGAGAAGGCACAAGTTCA+TGG | 0.459970 | 4_2:-18231374 | Msa0592720:CDS |
| GGCAAAGGAGGGCGGAGAGA+AGG | 0.460292 | 4_2:-18231387 | Msa0592720:CDS |
| CTCTTCTGACCCGCATTCCA+TGG | 0.460854 | 4_2:-18233211 | Msa0592720:CDS |
| AAAATTCAAATCATATAGTC+TGG | 0.462123 | 4_2:+18231097 | None:intergenic |
| GCTGATAGGCTTGATGCTAT+TGG | 0.472702 | 4_2:-18231931 | Msa0592720:CDS |
| GTGTTGTCCAAGATGCTGAT+AGG | 0.474522 | 4_2:-18231945 | Msa0592720:CDS |
| TCAGATCTTGGCAAAATAGC+AGG | 0.474774 | 4_2:+18231691 | None:intergenic |
| TCTTGAGGAAGAGGGAGTTG+AGG | 0.475838 | 4_2:-18232694 | Msa0592720:CDS |
| TCATCATATCTTTAAGCTTG+AGG | 0.493256 | 4_2:+18231602 | None:intergenic |
| TTTGTTGGCTCGAGTGGGAA+AGG | 0.493660 | 4_2:-18233455 | Msa0592720:five_prime_UTR |
| AAGAATAATGAAAATATCTC+AGG | 0.500186 | 4_2:+18234023 | None:intergenic |
| ATGATGCGGCACATGTTTGG+AGG | 0.501839 | 4_2:-18233275 | Msa0592720:CDS |
| CACGTTGCTTCACATTCGGC+GGG | 0.506510 | 4_2:-18231738 | Msa0592720:CDS |
| TAGGATAGTTACAATTTCCA+TGG | 0.508969 | 4_2:+18233194 | None:intergenic |
| CATTAGTTTCTCTCAGTCAA+AGG | 0.514420 | 4_2:-18233991 | Msa0592720:five_prime_UTR |
| GATTCCTGCAACTTACAAGA+TGG | 0.520142 | 4_2:+18231190 | None:intergenic |
| GTCAGAAGAGAGGCCTTCCT+CGG | 0.523559 | 4_2:+18233224 | None:intergenic |
| CATTTCAGGCTGGGCAAAGG+AGG | 0.525095 | 4_2:-18231399 | Msa0592720:intron |
| TCAAAGAGTTCTACGACGAA+TGG | 0.526682 | 4_2:-18231342 | Msa0592720:CDS |
| AATAAGAAAGGCTGAGGCGT+TGG | 0.532558 | 4_2:-18233331 | Msa0592720:CDS |
| AGAGGCCTTCCTCGGTGGCA+AGG | 0.535275 | 4_2:+18233232 | None:intergenic |
| ATTTCAGGCTGGGCAAAGGA+GGG | 0.541101 | 4_2:-18231398 | Msa0592720:intron |
| TTACAATTTCCATGGAATGC+GGG | 0.542408 | 4_2:+18233202 | None:intergenic |
| GAGGCCTTCCTCGGTGGCAA+GGG | 0.544423 | 4_2:+18233233 | None:intergenic |
| ATCCATTTCAGGCTGGGCAA+AGG | 0.545547 | 4_2:-18231402 | Msa0592720:intron |
| TCAAAACCAAGGACATTGCA+TGG | 0.551067 | 4_2:+18231123 | None:intergenic |
| TGGTTGAGAAAGCGATGAAA+GGG | 0.553284 | 4_2:-18233311 | Msa0592720:CDS |
| TTGGTTGAGAAAGCGATGAA+AGG | 0.561138 | 4_2:-18233312 | Msa0592720:CDS |
| TTCTATGCTTTCTGTCTGTG+AGG | 0.564633 | 4_2:-18233926 | Msa0592720:intron |
| GATCATATATTTCGCGAGCA+AGG | 0.564655 | 4_2:-18233404 | Msa0592720:five_prime_UTR |
| CAAAACCAAGGACATTGCAT+GGG | 0.568978 | 4_2:+18231124 | None:intergenic |
| CGGTGGCAAGGGAGAGAGCA+AGG | 0.570258 | 4_2:+18233244 | None:intergenic |
| AAGAGAGACGATGGAAAAGA+CGG | 0.574216 | 4_2:-18233358 | Msa0592720:exon |
| TCAGGCTGGGCAAAGGAGGG+CGG | 0.579737 | 4_2:-18231395 | Msa0592720:intron |
| ATTCCTGCAACTTACAAGAT+GGG | 0.586152 | 4_2:+18231191 | None:intergenic |
| TGATGCGGCACATGTTTGGA+GGG | 0.590520 | 4_2:-18233274 | Msa0592720:CDS |
| AAAGACGGACACAATAAGAA+AGG | 0.590777 | 4_2:-18233343 | Msa0592720:CDS |
| ACAGACAGAAAGCATAGAAG+TGG | 0.592793 | 4_2:+18233930 | None:intergenic |
| GTTACAATTTCCATGGAATG+CGG | 0.593875 | 4_2:+18233201 | None:intergenic |
| TGCTCTCTCCCTTGCCACCG+AGG | 0.611184 | 4_2:-18233241 | Msa0592720:CDS |
| TGGAATGCGGGTCAGAAGAG+AGG | 0.617247 | 4_2:+18233214 | None:intergenic |
| AATAATGAAAATATCTCAGG+AGG | 0.622199 | 4_2:+18234026 | None:intergenic |
| GCACGTTGCTTCACATTCGG+CGG | 0.624085 | 4_2:-18231739 | Msa0592720:CDS |
| CATTCGGCGGGAGTAAGAAG+AGG | 0.627216 | 4_2:-18231726 | Msa0592720:CDS |
| GAGTTCTACGACGAATGGAA+CGG | 0.628121 | 4_2:-18231337 | Msa0592720:CDS |
| AAAACCAAGGACATTGCATG+GGG | 0.628488 | 4_2:+18231125 | None:intergenic |
| GGACACAATAAGAAAGGCTG+AGG | 0.631192 | 4_2:-18233337 | Msa0592720:CDS |
| CGTTGTAACAAGAGAGACGA+TGG | 0.634960 | 4_2:-18233367 | Msa0592720:exon |
| GAATGACGCTTCTCATGATG+CGG | 0.637516 | 4_2:-18233289 | Msa0592720:CDS |
| ATTCGGCGGGAGTAAGAAGA+GGG | 0.658108 | 4_2:-18231725 | Msa0592720:CDS |
| TAAAGATATGATGAAAACCA+AGG | 0.666397 | 4_2:-18231593 | Msa0592720:intron |
| AGAAGAGAGGCCTTCCTCGG+TGG | 0.681062 | 4_2:+18233227 | None:intergenic |
| CGGGAAAAGGAACTACTGAA+CGG | 0.693020 | 4_2:-18231981 | Msa0592720:CDS |
| TAGTCTGGCCTTCAAAACCA+AGG | 0.695398 | 4_2:+18231112 | None:intergenic |
| TAGCATGCAAAACAAAACGC+AGG | 0.702388 | 4_2:+18233966 | None:intergenic |
| CAGGTGACTACAAATACCTG+AGG | 0.728521 | 4_2:-18232952 | Msa0592720:intron |
| GAGAAGGCACAAGTTCATGG+AGG | 0.729226 | 4_2:-18231371 | Msa0592720:CDS |
| AAACCAAGGACATTGCATGG+GGG | 0.759450 | 4_2:+18231126 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AATTTCAATAAAGTAATATA+AGG | - | chr4_2:18232512-18232531 | Msa0592720:intron | 10.0% |
| !! | AAATAATAGTATAAAAACAG+AGG | + | chr4_2:18231196-18231215 | None:intergenic | 15.0% |
| !!! | ATAATTTCAAGTACTAATTT+AGG | - | chr4_2:18232635-18232654 | Msa0592720:intron | 15.0% |
| !! | TAATTTCCAATAAATAAACA+AGG | + | chr4_2:18233011-18233030 | None:intergenic | 15.0% |
| !! | AAGAATAATGAAAATATCTC+AGG | + | chr4_2:18231040-18231059 | None:intergenic | 20.0% |
| !!! | CAAAATAATCACTTTTGTTT+AGG | - | chr4_2:18231221-18231240 | Msa0592720:three_prime_UTR | 20.0% |
| !!! | ATTTATACTTTCTTTTCTAC+AGG | - | chr4_2:18231566-18231585 | Msa0592720:intron | 20.0% |
| !!! | GATAATGGTAATATAGAAAT+AGG | + | chr4_2:18231899-18231918 | None:intergenic | 20.0% |
| !! | TATGAAGGTTAAAAAGATAA+TGG | + | chr4_2:18231914-18231933 | None:intergenic | 20.0% |
| !!! | TTATCTTTTTAACCTTCATA+TGG | - | chr4_2:18231914-18231933 | Msa0592720:intron | 20.0% |
| !! | ATTTATTAGCAAACTACAAT+TGG | + | chr4_2:18232070-18232089 | None:intergenic | 20.0% |
| !! | TGAACAAAATGAAAAACAAA+AGG | + | chr4_2:18232269-18232288 | None:intergenic | 20.0% |
| !! | TGATAATATAATCTGTTTCA+TGG | - | chr4_2:18232727-18232746 | Msa0592720:CDS | 20.0% |
| !! | TTATACAAAAGATATGAGAA+GGG | + | chr4_2:18232899-18232918 | None:intergenic | 20.0% |
| !! | ATTATACAAAAGATATGAGA+AGG | + | chr4_2:18232900-18232919 | None:intergenic | 20.0% |
| !!! | ACTTATCCTTGTTTATTTAT+TGG | - | chr4_2:18233002-18233021 | Msa0592720:intron | 20.0% |
| !!! | TTTTGGGTTAAAATTTGATA+AGG | + | chr4_2:18233518-18233537 | None:intergenic | 20.0% |
| !! | ACTTGTAAAAAAGACAAAAA+TGG | - | chr4_2:18233809-18233828 | Msa0592720:intron | 20.0% |
| !! | AAAATTCAAATCATATAGTC+TGG | + | chr4_2:18233966-18233985 | None:intergenic | 20.0% |
| !! | ATTTTGTTAGAATGAATGTG+AGG | - | chr4_2:18231269-18231288 | Msa0592720:three_prime_UTR | 25.0% |
| ! | AATCCTAATACATTGAATCA+GGG | + | chr4_2:18231459-18231478 | None:intergenic | 25.0% |
| ! | TAATCCTAATACATTGAATC+AGG | + | chr4_2:18231460-18231479 | None:intergenic | 25.0% |
| ! | TGATTCAATGTATTAGGATT+AGG | - | chr4_2:18231459-18231478 | Msa0592720:intron | 25.0% |
| ! | GTAATATAGAAATAGGAAGA+AGG | + | chr4_2:18231892-18231911 | None:intergenic | 25.0% |
| ! | AAAATGGAAAAATGAGAATG+AGG | + | chr4_2:18231943-18231962 | None:intergenic | 25.0% |
| !!! | CATTCTCATTTTTCCATTTT+AGG | - | chr4_2:18231943-18231962 | Msa0592720:CDS | 25.0% |
| ! | TATTTATACTTACTAACCTC+AGG | + | chr4_2:18232127-18232146 | None:intergenic | 25.0% |
| !! | AACTGTTGAAAATTTTCTTG+AGG | - | chr4_2:18232351-18232370 | Msa0592720:intron | 25.0% |
| ! | TTTGAAGATCATCAAAGAAA+TGG | - | chr4_2:18232408-18232427 | Msa0592720:intron | 25.0% |
| ! | TTGAAGATCATCAAAGAAAT+GGG | - | chr4_2:18232409-18232428 | Msa0592720:intron | 25.0% |
| ! | ACATGAAAAAGTAAGAACTT+AGG | + | chr4_2:18232472-18232491 | None:intergenic | 25.0% |
| ! | CTTTAATTAGAGAACAGAAA+AGG | + | chr4_2:18232570-18232589 | None:intergenic | 25.0% |
| !!! | TTAATTTTGATGCATGATCT+CGG | - | chr4_2:18232700-18232719 | Msa0592720:CDS | 25.0% |
| ! | TATCCTATTGCTAGAAAATT+GGG | - | chr4_2:18233178-18233197 | Msa0592720:intron | 25.0% |
| ! | TAAAGATATGATGAAAACCA+AGG | - | chr4_2:18233467-18233486 | Msa0592720:five_prime_UTR | 25.0% |
| ! | GGTCAATAAAATTATAGTAG+AGG | + | chr4_2:18233497-18233516 | None:intergenic | 25.0% |
| ! | TAGAATGAATGTGAGGTTTT+AGG | - | chr4_2:18231276-18231295 | Msa0592720:three_prime_UTR | 30.0% |
| ! | AGAATGAATGTGAGGTTTTA+GGG | - | chr4_2:18231277-18231296 | Msa0592720:three_prime_UTR | 30.0% |
| ! | AAAAGTGTGTACTGTGTAAA+AGG | - | chr4_2:18231303-18231322 | Msa0592720:three_prime_UTR | 30.0% |
| TAATGATACAAACATCCTCA+AGG | - | chr4_2:18231537-18231556 | Msa0592720:intron | 30.0% | |
| AGTATAAATCAAAAGCCTTG+AGG | + | chr4_2:18231555-18231574 | None:intergenic | 30.0% | |
| ! | TACTAAAGTTGCGTTTTTGT+TGG | - | chr4_2:18231590-18231609 | Msa0592720:intron | 30.0% |
| TAGGATAGTTACAATTTCCA+TGG | + | chr4_2:18231869-18231888 | None:intergenic | 30.0% | |
| TATAGAAATAGGAAGAAGGT+AGG | + | chr4_2:18231888-18231907 | None:intergenic | 30.0% | |
| ATAGTTGCTTACCTATATCA+TGG | + | chr4_2:18231988-18232007 | None:intergenic | 30.0% | |
| AGGTAAGCAACTATAATTGT+AGG | - | chr4_2:18231994-18232013 | Msa0592720:CDS | 30.0% | |
| ATAAAAAACCACACACTACA+CGG | + | chr4_2:18232032-18232051 | None:intergenic | 30.0% | |
| !! | TTTACTTTGTTGATAACTGC+AGG | - | chr4_2:18232089-18232108 | Msa0592720:intron | 30.0% |
| AGTATTAGCTCATATGAGAA+GGG | + | chr4_2:18232302-18232321 | None:intergenic | 30.0% | |
| !! | AGCTAATACTGTGTCATTTA+GGG | - | chr4_2:18232312-18232331 | Msa0592720:intron | 30.0% |
| !!! | TCAACAGTTTTTTCTTCAGA+TGG | + | chr4_2:18232340-18232359 | None:intergenic | 30.0% |
| ! | TGAAAATTTTCTTGAGGAAG+AGG | - | chr4_2:18232357-18232376 | Msa0592720:intron | 30.0% |
| ! | GAAAATTTTCTTGAGGAAGA+GGG | - | chr4_2:18232358-18232377 | Msa0592720:intron | 30.0% |
| GTATAATTCCTTCCAAAAGT+TGG | - | chr4_2:18232913-18232932 | Msa0592720:intron | 30.0% | |
| AGGATAAGTTGCAAACAAAA+TGG | + | chr4_2:18232991-18233010 | None:intergenic | 30.0% | |
| !! | CCTCTTTAAAACCTGAATAT+TGG | + | chr4_2:18233053-18233072 | None:intergenic | 30.0% |
| !!! | CCAATATTCAGGTTTTAAAG+AGG | - | chr4_2:18233050-18233069 | Msa0592720:intron | 30.0% |
| !!! | ATATTCAGGTTTTAAAGAGG+AGG | - | chr4_2:18233053-18233072 | Msa0592720:intron | 30.0% |
| GTATCCTATTGCTAGAAAAT+TGG | - | chr4_2:18233177-18233196 | Msa0592720:intron | 30.0% | |
| !! | ATTCCCAATTTTCTAGCAAT+AGG | + | chr4_2:18233184-18233203 | None:intergenic | 30.0% |
| GTCATAATTCTGCATTCAAA+GGG | + | chr4_2:18233211-18233230 | None:intergenic | 30.0% | |
| TGTCATAATTCTGCATTCAA+AGG | + | chr4_2:18233212-18233231 | None:intergenic | 30.0% | |
| ! | CTTTGTTTGCCTTCAATATT+AGG | - | chr4_2:18233294-18233313 | Msa0592720:CDS | 30.0% |
| GGAAAAATACATGAACAAAG+AGG | - | chr4_2:18233401-18233420 | Msa0592720:five_prime_UTR | 30.0% | |
| TCATCATATCTTTAAGCTTG+AGG | + | chr4_2:18233461-18233480 | None:intergenic | 30.0% | |
| !!! | TTCACGCTTAGTCTTTTTTT+GGG | + | chr4_2:18233534-18233553 | None:intergenic | 30.0% |
| !!! | TTTCACGCTTAGTCTTTTTT+TGG | + | chr4_2:18233535-18233554 | None:intergenic | 30.0% |
| AAGAATGCAGCAGATAAATT+TGG | + | chr4_2:18233578-18233597 | None:intergenic | 30.0% | |
| TGATTTAAGCTATCCATTTC+AGG | - | chr4_2:18233647-18233666 | Msa0592720:intron | 30.0% | |
| ! | CATTAGTTTCTCTCAGTCAA+AGG | - | chr4_2:18231069-18231088 | Msa0592720:three_prime_UTR | 35.0% |
| TTTAAGGGTCTTGAAAACCT+TGG | - | chr4_2:18231359-18231378 | Msa0592720:CDS | 35.0% | |
| AAAGACGGACACAATAAGAA+AGG | - | chr4_2:18231717-18231736 | Msa0592720:CDS | 35.0% | |
| TTACAATTTCCATGGAATGC+GGG | + | chr4_2:18231861-18231880 | None:intergenic | 35.0% | |
| GTTACAATTTCCATGGAATG+CGG | + | chr4_2:18231862-18231881 | None:intergenic | 35.0% | |
| GTATTAGCTCATATGAGAAG+GGG | + | chr4_2:18232301-18232320 | None:intergenic | 35.0% | |
| CAGTATTAGCTCATATGAGA+AGG | + | chr4_2:18232303-18232322 | None:intergenic | 35.0% | |
| !! | GAGCTAATACTGTGTCATTT+AGG | - | chr4_2:18232311-18232330 | Msa0592720:intron | 35.0% |
| CATCAAAGAAATGGGTAAGT+TGG | - | chr4_2:18232417-18232436 | Msa0592720:intron | 35.0% | |
| TAAGAACTTAGGCAAGAAAC+TGG | + | chr4_2:18232461-18232480 | None:intergenic | 35.0% | |
| TTTGACATGACTTTCAAAGC+AGG | - | chr4_2:18232665-18232684 | Msa0592720:CDS | 35.0% | |
| ACAAAAGATATGAGAAGGGT+AGG | + | chr4_2:18232895-18232914 | None:intergenic | 35.0% | |
| TAAGTTGCAAACAAAATGGC+AGG | + | chr4_2:18232987-18233006 | None:intergenic | 35.0% | |
| TGATGCTTCTTCCAATATTC+AGG | - | chr4_2:18233039-18233058 | Msa0592720:intron | 35.0% | |
| !! | CACGTTTTCATTTGAAGTGT+TGG | + | chr4_2:18233256-18233275 | None:intergenic | 35.0% |
| CGTGCAATTCCTAATATTGA+AGG | + | chr4_2:18233306-18233325 | None:intergenic | 35.0% | |
| TCCTTAGATAGATCAGATCT+TGG | + | chr4_2:18233384-18233403 | None:intergenic | 35.0% | |
| ! | ATTATAGTAGAGGTGTACCT+TGG | + | chr4_2:18233487-18233506 | None:intergenic | 35.0% |
| ATTCCTGCAACTTACAAGAT+GGG | + | chr4_2:18233872-18233891 | None:intergenic | 35.0% | |
| TGGGGGAAAAAATCTACATT+TGG | + | chr4_2:18233920-18233939 | None:intergenic | 35.0% | |
| TAGCATGCAAAACAAAACGC+AGG | + | chr4_2:18231097-18231116 | None:intergenic | 40.0% | |
| ! | ACAGACAGAAAGCATAGAAG+TGG | + | chr4_2:18231133-18231152 | None:intergenic | 40.0% |
| TTCTATGCTTTCTGTCTGTG+AGG | - | chr4_2:18231134-18231153 | Msa0592720:three_prime_UTR | 40.0% | |
| !! | AGGCTATGAGTTAGCCTTTA+TGG | - | chr4_2:18231323-18231342 | Msa0592720:exon | 40.0% |
| !! | CTATGAGTTAGCCTTTATGG+TGG | - | chr4_2:18231326-18231345 | Msa0592720:exon | 40.0% |
| CAGCCCTGATTCAATGTATT+AGG | - | chr4_2:18231453-18231472 | Msa0592720:intron | 40.0% | |
| GCTAACACATGGACATCAAA+TGG | + | chr4_2:18231490-18231509 | None:intergenic | 40.0% | |
| GATCATATATTTCGCGAGCA+AGG | - | chr4_2:18231656-18231675 | Msa0592720:CDS | 40.0% | |
| AAGAGAGACGATGGAAAAGA+CGG | - | chr4_2:18231702-18231721 | Msa0592720:CDS | 40.0% | |
| TTGGTTGAGAAAGCGATGAA+AGG | - | chr4_2:18231748-18231767 | Msa0592720:intron | 40.0% | |
| TGGTTGAGAAAGCGATGAAA+GGG | - | chr4_2:18231749-18231768 | Msa0592720:intron | 40.0% | |
| ! | AGTGTTGTTAGCCAACTTCA+AGG | - | chr4_2:18232218-18232237 | Msa0592720:intron | 40.0% |
| AAACAACCAAGCCTTGAAGT+TGG | + | chr4_2:18232232-18232251 | None:intergenic | 40.0% | |
| AGTACTATCCCTGATGATCA+TGG | - | chr4_2:18232863-18232882 | Msa0592720:intron | 40.0% | |
| AAGATATGAGAAGGGTAGGA+AGG | + | chr4_2:18232891-18232910 | None:intergenic | 40.0% | |
| !!! | AGGTTTTAAAGAGGAGGTGA+CGG | - | chr4_2:18233059-18233078 | Msa0592720:intron | 40.0% |
| TCTTGGACAACACCAAATTC+TGG | + | chr4_2:18233108-18233127 | None:intergenic | 40.0% | |
| !! | CTTGATGCTATTGGTGCTAT+AGG | - | chr4_2:18233138-18233157 | Msa0592720:intron | 40.0% |
| AGAATTATGACAGCTCTTCG+AGG | - | chr4_2:18233220-18233239 | Msa0592720:CDS | 40.0% | |
| ATTGCACGTTGCTTCACATT+CGG | - | chr4_2:18233318-18233337 | Msa0592720:CDS | 40.0% | |
| TCAGATCTTGGCAAAATAGC+AGG | + | chr4_2:18233372-18233391 | None:intergenic | 40.0% | |
| GCCAAGATCTGATCTATCTA+AGG | - | chr4_2:18233380-18233399 | Msa0592720:five_prime_UTR | 40.0% | |
| TGAGGAGCTTCTCATGAAAA+TGG | + | chr4_2:18233443-18233462 | None:intergenic | 40.0% | |
| TTAAGCTATCCATTTCAGGC+TGG | - | chr4_2:18233651-18233670 | Msa0592720:intron | 40.0% | |
| TAAGCTATCCATTTCAGGCT+GGG | - | chr4_2:18233652-18233671 | Msa0592720:intron | 40.0% | |
| TCAAAGAGTTCTACGACGAA+TGG | - | chr4_2:18233718-18233737 | Msa0592720:intron | 40.0% | |
| GATTCCTGCAACTTACAAGA+TGG | + | chr4_2:18233873-18233892 | None:intergenic | 40.0% | |
| TTGGAGCATGAAGCATGAAT+TGG | + | chr4_2:18233901-18233920 | None:intergenic | 40.0% | |
| AAAACCAAGGACATTGCATG+GGG | + | chr4_2:18233938-18233957 | None:intergenic | 40.0% | |
| CAAAACCAAGGACATTGCAT+GGG | + | chr4_2:18233939-18233958 | None:intergenic | 40.0% | |
| TCAAAACCAAGGACATTGCA+TGG | + | chr4_2:18233940-18233959 | None:intergenic | 40.0% | |
| !!! | TGCAATGTCCTTGGTTTTGA+AGG | - | chr4_2:18233940-18233959 | Msa0592720:five_prime_UTR | 40.0% |
| AGCCTTTATGGTGGTCAATC+AGG | - | chr4_2:18231335-18231354 | Msa0592720:CDS | 45.0% | |
| GCCTTTATGGTGGTCAATCA+GGG | - | chr4_2:18231336-18231355 | Msa0592720:CDS | 45.0% | |
| ACCCTGATTGACCACCATAA+AGG | + | chr4_2:18231340-18231359 | None:intergenic | 45.0% | |
| TGGTGGTCAATCAGGGTTTA+AGG | - | chr4_2:18231343-18231362 | Msa0592720:CDS | 45.0% | |
| GGTGGTCAATCAGGGTTTAA+GGG | - | chr4_2:18231344-18231363 | Msa0592720:CDS | 45.0% | |
| GATGTCCATGTGTTAGCTAC+TGG | - | chr4_2:18231493-18231512 | Msa0592720:intron | 45.0% | |
| CTAAGCCAGTAGCTAACACA+TGG | + | chr4_2:18231501-18231520 | None:intergenic | 45.0% | |
| !! | CATGTGTTAGCTACTGGCTT+AGG | - | chr4_2:18231499-18231518 | Msa0592720:intron | 45.0% |
| CGTTGTAACAAGAGAGACGA+TGG | - | chr4_2:18231693-18231712 | Msa0592720:CDS | 45.0% | |
| GGACACAATAAGAAAGGCTG+AGG | - | chr4_2:18231723-18231742 | Msa0592720:CDS | 45.0% | |
| AATAAGAAAGGCTGAGGCGT+TGG | - | chr4_2:18231729-18231748 | Msa0592720:CDS | 45.0% | |
| GAATGACGCTTCTCATGATG+CGG | - | chr4_2:18231771-18231790 | Msa0592720:intron | 45.0% | |
| AGAATGAGGCGACCATATGA+AGG | + | chr4_2:18231929-18231948 | None:intergenic | 45.0% | |
| GCAGCAAGCTCTACCTAAAA+TGG | + | chr4_2:18231959-18231978 | None:intergenic | 45.0% | |
| ATTCTTGTCCGTGTAGTGTG+TGG | - | chr4_2:18232021-18232040 | Msa0592720:intron | 45.0% | |
| CAGGTGACTACAAATACCTG+AGG | - | chr4_2:18232108-18232127 | Msa0592720:intron | 45.0% | |
| TGTTAGCCAACTTCAAGGCT+TGG | - | chr4_2:18232223-18232242 | Msa0592720:intron | 45.0% | |
| GGAAGGAACCATGATCATCA+GGG | + | chr4_2:18232874-18232893 | None:intergenic | 45.0% | |
| AGGAAGGAACCATGATCATC+AGG | + | chr4_2:18232875-18232894 | None:intergenic | 45.0% | |
| ! | TTCAAAGACGCGCCAACTTT+TGG | + | chr4_2:18232928-18232947 | None:intergenic | 45.0% |
| !!! | GGTTTTAAAGAGGAGGTGAC+GGG | - | chr4_2:18233060-18233079 | Msa0592720:intron | 45.0% |
| CGGGAAAAGGAACTACTGAA+CGG | - | chr4_2:18233079-18233098 | Msa0592720:intron | 45.0% | |
| ACTGAACGGAGTCCAGAATT+TGG | - | chr4_2:18233093-18233112 | Msa0592720:CDS | 45.0% | |
| GTGTTGTCCAAGATGCTGAT+AGG | - | chr4_2:18233115-18233134 | Msa0592720:intron | 45.0% | |
| CATCAAGCCTATCAGCATCT+TGG | + | chr4_2:18233125-18233144 | None:intergenic | 45.0% | |
| GCTGATAGGCTTGATGCTAT+TGG | - | chr4_2:18233129-18233148 | Msa0592720:intron | 45.0% | |
| GAGTTCTACGACGAATGGAA+CGG | - | chr4_2:18233723-18233742 | Msa0592720:intron | 45.0% | |
| GTTCCCATCTTGTAAGTTGC+AGG | - | chr4_2:18233866-18233885 | Msa0592720:intron | 45.0% | |
| AAACCAAGGACATTGCATGG+GGG | + | chr4_2:18233937-18233956 | None:intergenic | 45.0% | |
| ! | TAGTCTGGCCTTCAAAACCA+AGG | + | chr4_2:18233951-18233970 | None:intergenic | 45.0% |
| GGGTCTTGAAAACCTTGGTC+TGG | - | chr4_2:18231364-18231383 | Msa0592720:CDS | 50.0% | |
| TGGACACTTGTGAGCAGATC+AGG | - | chr4_2:18231384-18231403 | Msa0592720:CDS | 50.0% | |
| GGACACTTGTGAGCAGATCA+GGG | - | chr4_2:18231385-18231404 | Msa0592720:CDS | 50.0% | |
| AGATCAGGGTTGTGCCATCT+AGG | - | chr4_2:18231399-18231418 | Msa0592720:intron | 50.0% | |
| ! | GGGTTGTGCCATCTAGGATT+CGG | - | chr4_2:18231405-18231424 | Msa0592720:intron | 50.0% |
| ! | GTGCCATCTAGGATTCGGAA+TGG | - | chr4_2:18231410-18231429 | Msa0592720:intron | 50.0% |
| CGTCCATTCCGAATCCTAGA+TGG | + | chr4_2:18231416-18231435 | None:intergenic | 50.0% | |
| !!! | TGCGTTTTTGTTGGCTCGAG+TGG | - | chr4_2:18231599-18231618 | Msa0592720:CDS | 50.0% |
| !!! | GCGTTTTTGTTGGCTCGAGT+GGG | - | chr4_2:18231600-18231619 | Msa0592720:CDS | 50.0% |
| !! | TTTGTTGGCTCGAGTGGGAA+AGG | - | chr4_2:18231605-18231624 | Msa0592720:CDS | 50.0% |
| CTCATGATGCGGCACATGTT+TGG | - | chr4_2:18231782-18231801 | Msa0592720:intron | 50.0% | |
| ATGATGCGGCACATGTTTGG+AGG | - | chr4_2:18231785-18231804 | Msa0592720:intron | 50.0% | |
| TGATGCGGCACATGTTTGGA+GGG | - | chr4_2:18231786-18231805 | Msa0592720:intron | 50.0% | |
| GCTGCACTGCTCCATGATAT+AGG | - | chr4_2:18231974-18231993 | Msa0592720:CDS | 50.0% | |
| TCTTGAGGAAGAGGGAGTTG+AGG | - | chr4_2:18232366-18232385 | Msa0592720:intron | 50.0% | |
| ! | AAGACGCGCCAACTTTTGGA+AGG | + | chr4_2:18232924-18232943 | None:intergenic | 50.0% |
| !! | AAAGAGGAGGTGACGGGAAA+AGG | - | chr4_2:18233066-18233085 | Msa0592720:intron | 50.0% |
| ATTCGGCGGGAGTAAGAAGA+GGG | - | chr4_2:18233335-18233354 | Msa0592720:CDS | 50.0% | |
| ATCCATTTCAGGCTGGGCAA+AGG | - | chr4_2:18233658-18233677 | Msa0592720:intron | 50.0% | |
| ATTTCAGGCTGGGCAAAGGA+GGG | - | chr4_2:18233662-18233681 | Msa0592720:intron | 50.0% | |
| ! | GGAGAGAAGGCACAAGTTCA+TGG | - | chr4_2:18233686-18233705 | Msa0592720:intron | 50.0% |
| ! | GAGAAGGCACAAGTTCATGG+AGG | - | chr4_2:18233689-18233708 | Msa0592720:intron | 50.0% |
| TTTCCCCCATGCAATGTCCT+TGG | - | chr4_2:18233931-18233950 | Msa0592720:five_prime_UTR | 50.0% | |
| GCTCACAAGTGTCCAGACCA+AGG | + | chr4_2:18231379-18231398 | None:intergenic | 55.0% | |
| ! | TGGGAAAGGTGTGCTGTTGC+AGG | - | chr4_2:18231619-18231638 | Msa0592720:CDS | 55.0% |
| GTCAGAAGAGAGGCCTTCCT+CGG | + | chr4_2:18231839-18231858 | None:intergenic | 55.0% | |
| TGGAATGCGGGTCAGAAGAG+AGG | + | chr4_2:18231849-18231868 | None:intergenic | 55.0% | |
| CTCTTCTGACCCGCATTCCA+TGG | - | chr4_2:18231849-18231868 | Msa0592720:intron | 55.0% | |
| GCACGTTGCTTCACATTCGG+CGG | - | chr4_2:18233321-18233340 | Msa0592720:CDS | 55.0% | |
| CACGTTGCTTCACATTCGGC+GGG | - | chr4_2:18233322-18233341 | Msa0592720:CDS | 55.0% | |
| CATTCGGCGGGAGTAAGAAG+AGG | - | chr4_2:18233334-18233353 | Msa0592720:CDS | 55.0% | |
| CTCCTTTGCCCAGCCTGAAA+TGG | + | chr4_2:18233663-18233682 | None:intergenic | 55.0% | |
| CATTTCAGGCTGGGCAAAGG+AGG | - | chr4_2:18233661-18233680 | Msa0592720:intron | 55.0% | |
| ! | CGAGCAAGGTGTGCTGTTGC+AGG | - | chr4_2:18231670-18231689 | Msa0592720:CDS | 60.0% |
| AGAAGAGAGGCCTTCCTCGG+TGG | + | chr4_2:18231836-18231855 | None:intergenic | 60.0% | |
| CGGTGGCAAGGGAGAGAGCA+AGG | + | chr4_2:18231819-18231838 | None:intergenic | 65.0% | |
| TGCTCTCTCCCTTGCCACCG+AGG | - | chr4_2:18231819-18231838 | Msa0592720:intron | 65.0% | |
| CTCTCCCTTGCCACCGAGGA+AGG | - | chr4_2:18231823-18231842 | Msa0592720:intron | 65.0% | |
| GAGGCCTTCCTCGGTGGCAA+GGG | + | chr4_2:18231830-18231849 | None:intergenic | 65.0% | |
| AGAGGCCTTCCTCGGTGGCA+AGG | + | chr4_2:18231831-18231850 | None:intergenic | 65.0% | |
| TCAGGCTGGGCAAAGGAGGG+CGG | - | chr4_2:18233665-18233684 | Msa0592720:intron | 65.0% | |
| GGCAAAGGAGGGCGGAGAGA+AGG | - | chr4_2:18233673-18233692 | Msa0592720:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 18231037 | 18234045 | 18231037 | ID=Msa0592720;Name=Msa0592720 |
| chr4_2 | mRNA | 18231037 | 18234045 | 18231037 | ID=Msa0592720-mRNA-1;Parent=Msa0592720;Name=Msa0592720-mRNA-1;_AED=0.08;_eAED=0.08;_QI=243|1|1|1|0.85|0.75|8|290|223 |
| chr4_2 | exon | 18231037 | 18231413 | 18231037 | ID=Msa0592720-mRNA-1:exon:5309;Parent=Msa0592720-mRNA-1 |
| chr4_2 | exon | 18231594 | 18231766 | 18231594 | ID=Msa0592720-mRNA-1:exon:5308;Parent=Msa0592720-mRNA-1 |
| chr4_2 | exon | 18231923 | 18232021 | 18231923 | ID=Msa0592720-mRNA-1:exon:5307;Parent=Msa0592720-mRNA-1 |
| chr4_2 | exon | 18232652 | 18232749 | 18232652 | ID=Msa0592720-mRNA-1:exon:5306;Parent=Msa0592720-mRNA-1 |
| chr4_2 | exon | 18232953 | 18232971 | 18232953 | ID=Msa0592720-mRNA-1:exon:5305;Parent=Msa0592720-mRNA-1 |
| chr4_2 | exon | 18233087 | 18233117 | 18233087 | ID=Msa0592720-mRNA-1:exon:5304;Parent=Msa0592720-mRNA-1 |
| chr4_2 | exon | 18233206 | 18233494 | 18233206 | ID=Msa0592720-mRNA-1:exon:5303;Parent=Msa0592720-mRNA-1 |
| chr4_2 | exon | 18233927 | 18234045 | 18233927 | ID=Msa0592720-mRNA-1:exon:5302;Parent=Msa0592720-mRNA-1 |
| chr4_2 | five_prime_UTR | 18233927 | 18234045 | 18233927 | ID=Msa0592720-mRNA-1:five_prime_utr;Parent=Msa0592720-mRNA-1 |
| chr4_2 | five_prime_UTR | 18233371 | 18233494 | 18233371 | ID=Msa0592720-mRNA-1:five_prime_utr;Parent=Msa0592720-mRNA-1 |
| chr4_2 | CDS | 18233206 | 18233370 | 18233206 | ID=Msa0592720-mRNA-1:cds;Parent=Msa0592720-mRNA-1 |
| chr4_2 | CDS | 18233087 | 18233117 | 18233087 | ID=Msa0592720-mRNA-1:cds;Parent=Msa0592720-mRNA-1 |
| chr4_2 | CDS | 18232953 | 18232971 | 18232953 | ID=Msa0592720-mRNA-1:cds;Parent=Msa0592720-mRNA-1 |
| chr4_2 | CDS | 18232652 | 18232749 | 18232652 | ID=Msa0592720-mRNA-1:cds;Parent=Msa0592720-mRNA-1 |
| chr4_2 | CDS | 18231923 | 18232021 | 18231923 | ID=Msa0592720-mRNA-1:cds;Parent=Msa0592720-mRNA-1 |
| chr4_2 | CDS | 18231594 | 18231766 | 18231594 | ID=Msa0592720-mRNA-1:cds;Parent=Msa0592720-mRNA-1 |
| chr4_2 | CDS | 18231327 | 18231413 | 18231327 | ID=Msa0592720-mRNA-1:cds;Parent=Msa0592720-mRNA-1 |
| chr4_2 | three_prime_UTR | 18231037 | 18231326 | 18231037 | ID=Msa0592720-mRNA-1:three_prime_utr;Parent=Msa0592720-mRNA-1 |
| Gene Sequence |
| Protein sequence |
