AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0966340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966340 MtrunA17_Chr6g0488881 97.204 608 17 0 1 608 62 669 0.0 1243
Msa0966340 MtrunA17_Chr4g0000131 62.373 691 259 1 2 691 65 755 0.0 943
Msa0966340 MtrunA17_Chr4g0020031 60.347 691 272 2 3 691 66 756 0.0 918
Msa0966340 MtrunA17_Chr7g0228111 60.203 691 273 2 3 691 66 756 0.0 908
Msa0966340 MtrunA17_Chr5g0396321 60.462 693 272 2 1 692 63 754 0.0 885
Msa0966340 MtrunA17_Chr6g0488821 58.250 697 279 6 1 692 77 766 0.0 866
Msa0966340 MtrunA17_Chr3g0090601 56.851 686 258 3 7 691 38 686 0.0 818
Msa0966340 MtrunA17_Chr8g0342291 59.174 605 238 2 93 696 7 603 0.0 802
Msa0966340 MtrunA17_Chr4g0000191 63.600 500 181 1 193 691 1 500 0.0 696
Msa0966340 MtrunA17_Chr8g0342311 60.196 510 202 1 188 696 11 520 0.0 686
Msa0966340 MtrunA17_Chr7g0238841 56.250 512 212 3 193 692 1 512 0.0 625
Msa0966340 MtrunA17_Chr6g0463651 80.321 249 49 0 427 675 1 249 1.14e-147 429
Msa0966340 MtrunA17_Chr8g0342271 59.259 297 120 1 93 388 15 311 2.87e-138 409
Msa0966340 MtrunA17_Chr6g0463701 74.074 216 56 0 246 461 12 227 3.62e-119 357
Msa0966340 MtrunA17_Chr6g0486411 56.908 304 109 3 391 692 2 285 9.16e-115 347
Msa0966340 MtrunA17_Chr6g0463661 75.294 170 42 0 259 428 1 170 1.05e-93 288
Msa0966340 MtrunA17_Chr8g0342251 54.146 205 88 1 460 658 1 205 1.75e-78 249
Msa0966340 MtrunA17_Chr6g0486401 54.067 209 94 2 193 399 1 209 3.30e-77 246
Msa0966340 MtrunA17_Chr4g0000181 54.315 197 90 0 3 199 1 197 3.18e-76 243
Msa0966340 MtrunA17_Chr8g0342321 51.351 185 90 0 7 191 6 190 2.93e-68 222
Msa0966340 MtrunA17_Chr7g0238831 53.763 186 84 2 23 208 96 279 3.32e-66 220
Msa0966340 MtrunA17_Chr6g0486391 55.621 169 74 1 29 197 4 171 1.55e-65 214
Msa0966340 MtrunA17_Chr6g0463691 84.167 120 19 0 545 664 8 127 6.58e-65 211
Msa0966340 MtrunA17_Chr8g0342241 51.685 178 81 1 427 604 2 174 2.58e-57 192
Msa0966340 MtrunA17_Chr6g0463721 80.208 96 19 0 1 96 62 157 3.06e-46 162
Msa0966340 MtrunA17_Chr6g0488871 96.667 60 2 0 642 701 1 60 8.02e-35 126
Msa0966340 MtrunA17_Chr6g0463671 83.051 59 10 0 193 251 1 59 3.21e-30 113
Msa0966340 MtrunA17_Chr6g0463711 83.333 54 9 0 193 246 1 54 1.60e-25 100
Msa0966340 MtrunA17_Chr8g0342261 63.793 58 21 0 387 444 31 88 6.37e-21 89.0
Msa0966340 MtrunA17_Chr8g0342301 50.000 80 40 0 17 96 80 159 8.71e-21 90.1
Msa0966340 MtrunA17_Chr8g0342281 42.029 69 40 0 3 71 66 134 5.64e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966340 AT2G07050.1 61.063 696 269 2 1 695 63 757 0.0 931
Msa0966340 AT2G07050.2 62.199 664 249 2 33 695 4 666 0.0 905
Msa0966340 AT1G78960.2 58.273 695 289 1 2 695 66 760 0.0 893
Msa0966340 AT1G78960.1 58.273 695 289 1 2 695 66 760 0.0 893
Msa0966340 AT1G78960.3 58.273 695 289 1 2 695 66 760 0.0 893
Msa0966340 AT1G78955.1 60.145 690 274 1 3 691 67 756 0.0 891
Msa0966340 AT1G78955.4 60.000 690 275 1 3 691 2 691 0.0 889
Msa0966340 AT1G78950.2 59.334 691 280 1 2 691 75 765 0.0 886
Msa0966340 AT1G78950.1 59.334 691 280 1 2 691 66 756 0.0 885
Msa0966340 AT1G78970.1 57.453 691 290 2 3 692 67 754 0.0 847
Msa0966340 AT1G78970.2 57.453 691 290 2 3 692 67 754 0.0 847
Msa0966340 AT1G78970.3 57.453 691 290 2 3 692 67 754 0.0 847
Msa0966340 AT1G66960.3 56.105 688 301 1 2 688 66 753 0.0 846
Msa0966340 AT1G66960.1 56.105 688 301 1 2 688 66 753 0.0 846
Msa0966340 AT1G66960.4 56.105 688 301 1 2 688 66 753 0.0 846
Msa0966340 AT1G66960.2 56.105 688 301 1 2 688 75 762 0.0 845
Msa0966340 AT1G78960.4 58.359 658 273 1 2 658 66 723 0.0 845
Msa0966340 AT1G78955.2 59.361 657 266 1 3 658 2 658 0.0 834
Msa0966340 AT1G78960.5 60.263 609 241 1 88 695 1 609 0.0 814
Msa0966340 AT3G45130.2 59.031 681 275 3 16 693 76 755 0.0 798
Msa0966340 AT3G45130.4 59.031 681 275 3 16 693 76 755 0.0 798
Msa0966340 AT3G45130.1 59.031 681 275 3 16 693 76 755 0.0 798
Msa0966340 AT3G45130.5 59.031 681 275 3 16 693 76 755 0.0 798
Msa0966340 AT3G45130.3 59.031 681 275 3 16 693 76 755 0.0 798
Msa0966340 AT1G78955.5 61.618 581 222 1 112 691 1 581 0.0 764
Msa0966340 AT1G78955.3 59.204 603 245 1 3 604 2 604 0.0 762
Msa0966340 AT1G78500.2 51.445 692 329 3 3 687 67 758 0.0 747
Msa0966340 AT1G78500.1 51.445 692 329 3 3 687 67 758 0.0 747
Msa0966340 AT5G36150.1 49.855 690 345 1 3 691 67 756 0.0 746
Msa0966340 AT5G36150.2 49.855 690 345 1 3 691 67 756 0.0 746
Msa0966340 AT5G48010.2 48.633 695 347 4 3 689 67 759 0.0 722
Msa0966340 AT4G15370.2 49.420 690 337 4 3 687 67 749 0.0 721
Msa0966340 AT4G15370.1 49.206 693 337 5 3 687 67 752 0.0 717
Msa0966340 AT4G15340.1 48.784 699 352 3 3 695 67 765 0.0 714
Msa0966340 AT5G42600.1 48.834 686 348 3 4 687 68 752 0.0 706
Msa0966340 AT5G48010.1 47.770 695 345 5 3 689 67 751 0.0 699
Msa0966340 AT3G29255.1 47.158 651 312 3 39 687 78 698 0.0 637
Msa0966340 AT4G15340.2 47.961 515 262 3 3 511 67 581 3.51e-175 513
Msa0966340 AT1G78480.1 53.968 63 29 0 74 136 114 176 3.19e-18 84.0

Find 215 sgRNAs with CRISPR-Local

Find 389 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCCAATGTCATTTCTAAATA+TGG 0.140123 6_3:-94529880 Msa0966340:five_prime_UTR
AATTTGCACGGTTGTCTTCT+AGG 0.195387 6_3:+94525285 None:intergenic
TGGGCTTTGTTGTCCCTTAT+CGG 0.261922 6_3:-94525248 Msa0966340:CDS
ATCCACTTCCACCAGAATTC+TGG 0.268631 6_3:-94527689 Msa0966340:CDS
CTCACTACCCAGGTGCTAAT+TGG 0.269588 6_3:-94524783 Msa0966340:three_prime_UTR
ATGCCCATGTCATATCTATA+TGG 0.269795 6_3:-94527506 Msa0966340:CDS
TTCCATCATGGGGAAAGTTC+TGG 0.280761 6_3:-94527842 Msa0966340:CDS
CCCGAATCCCTGATTACTTC+TGG 0.281207 6_3:-94526993 Msa0966340:CDS
CAACTACCTGTGAGGCCTTC+AGG 0.291777 6_3:+94526488 None:intergenic
GCCTTGTCTTCACCATCTTC+AGG 0.293538 6_3:+94527915 None:intergenic
CTTCTCTCAGTGATTTGATT+AGG 0.298981 6_3:+94527456 None:intergenic
GGATGAATAGGGGTGAATTT+TGG 0.300808 6_3:+94527660 None:intergenic
AGTTTAACTGCTGGTGGAAT+GGG 0.308591 6_3:+94529808 None:intergenic
TTTGGTAGAAACCAGAATTC+TGG 0.308766 6_3:+94527678 None:intergenic
CAATGGAGAGATGCAGAAAT+TGG 0.310238 6_3:-94527893 Msa0966340:CDS
ATAATATATATACCTTGTTT+TGG 0.312394 6_3:+94525378 None:intergenic
AGAGAAGAAGATATCATAAC+AGG 0.329769 6_3:-94529784 Msa0966340:CDS
TTGTGCTATGACCCTCTATA+TGG 0.332950 6_3:+94527988 None:intergenic
TAACTTCATTCCACGGTGTA+TGG 0.336068 6_3:+94525090 None:intergenic
AGGTATGCACCTGGATGAAT+AGG 0.345041 6_3:+94527648 None:intergenic
GTAATGGCCCTCTATGTTAC+AGG 0.353508 6_3:-94529456 Msa0966340:CDS
TTCGATATGATGAGTAGTTC+AGG 0.355276 6_3:+94524893 None:intergenic
CATAACATATCTTGAATCAT+AGG 0.357423 6_3:+94527225 None:intergenic
TTCAATGAAATGAATTGCTT+TGG 0.360615 6_3:+94525733 None:intergenic
ACAATTCAAGGTGCAGCATT+TGG 0.361763 6_3:+94524811 None:intergenic
ACTCCACAGGTACGGCTGTT+GGG 0.364012 6_3:-94525555 Msa0966340:intron
CTATGATTCAAGATATGTTA+TGG 0.368024 6_3:-94527224 Msa0966340:CDS
AGTTTGTATGCCTCTGAGTT+CGG 0.368801 6_3:+94527024 None:intergenic
AAATTCTTACAGTTGGTTAG+AGG 0.371127 6_3:-94526113 Msa0966340:intron
GTTTGTATGCCTCTGAGTTC+GGG 0.373213 6_3:+94527025 None:intergenic
CCTTGACCATGGTGGTTTAG+TGG 0.374435 6_3:-94527868 Msa0966340:CDS
TTCCAGTTGATTTGATCATA+AGG 0.375182 6_3:+94527419 None:intergenic
AACCTTAGCAATAGTATTCC+GGG 0.376806 6_3:+94527391 None:intergenic
GGATCCCTTGATGAGGTTCT+AGG 0.377958 6_3:-94529435 Msa0966340:CDS
GCCAGAAGTAATCAGGGATT+CGG 0.379265 6_3:+94526992 None:intergenic
TCTGCAAGCCAGAAGTAATC+AGG 0.379292 6_3:+94526985 None:intergenic
CAGTTTAACTGCTGGTGGAA+TGG 0.379805 6_3:+94529807 None:intergenic
TTGTCAAAGCAGCTTCCTAA+TGG 0.380943 6_3:-94525428 Msa0966340:CDS
CTGCCAGAAAATACAAAATT+CGG 0.382313 6_3:+94524716 None:intergenic
ATCGAAACATCTTTCCCATA+TGG 0.386037 6_3:-94524876 Msa0966340:CDS
TTGTTGTCCCTTATCGGTGC+AGG 0.386134 6_3:-94525242 Msa0966340:CDS
TGTCAAAGCAGCTTCCTAAT+GGG 0.387123 6_3:-94525427 Msa0966340:CDS
AATAATGAATGCAGAGCTTT+GGG 0.387482 6_3:-94526606 Msa0966340:intron
TATATATTGCGTTTCTGAAA+AGG 0.392904 6_3:+94524586 None:intergenic
AACCTTATGATCAAATCAAC+TGG 0.400633 6_3:-94527421 Msa0966340:CDS
TTTCCTTAGCTCTATGAGTT+GGG 0.400737 6_3:+94525771 None:intergenic
TAATAATGAATGCAGAGCTT+TGG 0.407402 6_3:-94526607 Msa0966340:intron
TAATGGCGGGTTCCCTGCTT+GGG 0.410324 6_3:-94526143 Msa0966340:CDS
TATGATTCAAGATATGTTAT+GGG 0.411393 6_3:-94527223 Msa0966340:CDS
ATACTCTCCCAGAGCCCATA+TGG 0.417018 6_3:+94524861 None:intergenic
GGTATGCACCTGGATGAATA+GGG 0.417291 6_3:+94527649 None:intergenic
GAGGGTCATAGCACAATGTT+TGG 0.419263 6_3:-94527981 Msa0966340:CDS
CATCTTTCCCATATGGGCTC+TGG 0.420694 6_3:-94524869 Msa0966340:CDS
GTAGCTTTGTGAAGAGATAC+AGG 0.421470 6_3:+94525795 None:intergenic
GATTTGATTAGGTCAGTGAT+AGG 0.421520 6_3:+94527467 None:intergenic
CACTGGCCTGCAGAATCTGC+TGG 0.422487 6_3:-94529694 Msa0966340:CDS
TCTTCTCTCAGTTTAACTGC+TGG 0.428487 6_3:+94529799 None:intergenic
TACTTCTGGCTTGCAGAAGA+TGG 0.431129 6_3:-94526979 Msa0966340:CDS
AAACCTTAGCAATAGTATTC+CGG 0.434367 6_3:+94527390 None:intergenic
TCTCTCAGTTTAACTGCTGG+TGG 0.434390 6_3:+94529802 None:intergenic
ATTTCCTTAGCTCTATGAGT+TGG 0.436325 6_3:+94525770 None:intergenic
AACCTGCCCTGCACCGATAA+GGG 0.436795 6_3:+94525235 None:intergenic
TCCATCATGGGGAAAGTTCT+GGG 0.438199 6_3:-94527841 Msa0966340:CDS
TAACCTGCCCTGCACCGATA+AGG 0.438248 6_3:+94525234 None:intergenic
TTGAAGACACACTGATTGAG+AGG 0.442774 6_3:-94525966 Msa0966340:CDS
CCAGAAGTAATCAGGGATTC+GGG 0.443793 6_3:+94526993 None:intergenic
ATGCAACTACAGGAGATAAC+AGG 0.444350 6_3:-94524937 Msa0966340:intron
GTTTAGTGGCTATTCCATCA+TGG 0.446920 6_3:-94527854 Msa0966340:CDS
TAATGCCTTCTGTCTAAGCT+TGG 0.447789 6_3:+94527152 None:intergenic
CAAATTTAGTTCAAACTTCG+TGG 0.454847 6_3:-94525268 Msa0966340:CDS
ATAGAATACCAGGATCCATC+AGG 0.456520 6_3:+94525698 None:intergenic
GTAATGGCGGGTTCCCTGCT+TGG 0.457885 6_3:-94526144 Msa0966340:CDS
AAAATGCCAACTGATCTTGT+TGG 0.460164 6_3:-94526229 Msa0966340:CDS
ATTATGTTTGATAGCGCGTT+GGG 0.462799 6_3:-94527055 Msa0966340:CDS
AGCCTCAAAATTCTTACAGT+TGG 0.465115 6_3:-94526120 Msa0966340:CDS
AACCAGAATTCTGGTGGAAG+TGG 0.466445 6_3:+94527687 None:intergenic
TCGAAACATCTTTCCCATAT+GGG 0.466714 6_3:-94524875 Msa0966340:CDS
TACTCCACAGGTACGGCTGT+TGG 0.468900 6_3:-94525556 Msa0966340:intron
TGGCACTTGGTTTGCTGTAG+AGG 0.475158 6_3:-94525516 Msa0966340:CDS
TGCCCATGTCATATCTATAT+GGG 0.475927 6_3:-94527505 Msa0966340:CDS
AGATGGAGATTTCCCACAAC+AGG 0.476470 6_3:-94525047 Msa0966340:intron
CACAAAACCCTGATGGATCC+TGG 0.477094 6_3:-94525706 Msa0966340:intron
AACAGTAGATACCTTTGCAT+TGG 0.479394 6_3:-94527093 Msa0966340:CDS
AACATAAGAAGGAAATTGTT+CGG 0.480544 6_3:-94529407 Msa0966340:CDS
ATCAATTCACAGATGGAAGA+TGG 0.483390 6_3:-94525064 Msa0966340:CDS
ACCCAGAACTTTCCCCATGA+TGG 0.487722 6_3:+94527840 None:intergenic
GGCACTTGGTTTGCTGTAGA+GGG 0.487793 6_3:-94525515 Msa0966340:CDS
ATCTTTCCCATATGGGCTCT+GGG 0.491199 6_3:-94524868 Msa0966340:CDS
ATGGGGATTTCTTTATCATG+TGG 0.493396 6_3:-94527205 Msa0966340:CDS
GTCCCTTATCGGTGCAGGGC+AGG 0.495376 6_3:-94525237 Msa0966340:intron
ACAATTTCCTTCTTATGTTG+AGG 0.498096 6_3:+94529411 None:intergenic
AATAGGTATGTTGAGTGCAC+TGG 0.502674 6_3:-94525833 Msa0966340:intron
CGCTACAGAGCAGTAATGGC+GGG 0.502708 6_3:-94526156 Msa0966340:CDS
CTCTCGCTACAGAGCAGTAA+TGG 0.505047 6_3:-94526160 Msa0966340:CDS
CATTGATTACAACAATAAGA+AGG 0.505283 6_3:-94529756 Msa0966340:CDS
TCTAGGACCTCAACATAAGA+AGG 0.512830 6_3:-94529418 Msa0966340:CDS
TGAAATGAATTGCTTTGGAA+AGG 0.513073 6_3:+94525738 None:intergenic
TTTAGTGGCTATTCCATCAT+GGG 0.514005 6_3:-94527853 Msa0966340:CDS
TCACGCTATATATAGGTACT+TGG 0.516796 6_3:-94527735 Msa0966340:intron
TAGTGAGTAGTTACAATTCA+AGG 0.517855 6_3:+94524799 None:intergenic
GTGTCTTCAAAGAATTCAGT+TGG 0.517960 6_3:+94525979 None:intergenic
GAATTTGTGCAGACAAGACT+CGG 0.520633 6_3:+94524833 None:intergenic
AAAGGCCAGCAATTCAGAAA+AGG 0.520870 6_3:+94527177 None:intergenic
CTCCACAGGTACGGCTGTTG+GGG 0.523437 6_3:-94525554 Msa0966340:intron
GACAGAACGAAGATGGTGGA+TGG 0.523858 6_3:-94528016 Msa0966340:intron
ATATCTTGAATCATAGGATG+TGG 0.524227 6_3:+94527231 None:intergenic
TTCAAGCTCATGATGGCCAC+TGG 0.530366 6_3:-94529711 Msa0966340:CDS
GTCTCTGACTGCACCGCAGA+AGG 0.530369 6_3:-94526379 Msa0966340:CDS
CTACACTAATTACCTGTTGT+GGG 0.532832 6_3:+94525035 None:intergenic
ACCATATTTAGAAATGACAT+TGG 0.533087 6_3:+94529879 None:intergenic
ACAGAACGAAGATGGTGGAT+GGG 0.533685 6_3:-94528015 Msa0966340:intron
GCTACACTAATTACCTGTTG+TGG 0.534062 6_3:+94525034 None:intergenic
TATATTGCACTGAGGCTGCT+TGG 0.534774 6_3:-94527945 Msa0966340:CDS
TCTATATGGGAAGAAGTTTG+TGG 0.537189 6_3:-94527492 Msa0966340:CDS
AAATCAACTGGAACAAAGCC+CGG 0.537569 6_3:-94527409 Msa0966340:CDS
TCGATATGATGAGTAGTTCA+GGG 0.538351 6_3:+94524894 None:intergenic
TTTGCAAGGAAGGACTGTTA+CGG 0.538358 6_3:+94525468 None:intergenic
AACTTCATTCCACGGTGTAT+GGG 0.539799 6_3:+94525091 None:intergenic
TACTCTCCCAGAGCCCATAT+GGG 0.543860 6_3:+94524862 None:intergenic
TGTTGTCCCTTATCGGTGCA+GGG 0.544685 6_3:-94525241 Msa0966340:CDS
AGATAACAGGAGTATTTATG+AGG 0.545080 6_3:-94524924 Msa0966340:CDS
GTTAATAATCAATTCACAGA+TGG 0.545863 6_3:-94525071 Msa0966340:CDS
TGTAACGTGAGTGAAGAGTA+TGG 0.547729 6_3:-94526538 Msa0966340:CDS
TGACTTCCTGAAGGCCTCAC+AGG 0.548212 6_3:-94526494 Msa0966340:CDS
TGGGGATTTCTTTATCATGT+GGG 0.548896 6_3:-94527204 Msa0966340:CDS
TGGGGAATTTGCTATACGTA+TGG 0.549854 6_3:-94525536 Msa0966340:CDS
GCACTGAGGCTGCTTGGAGA+AGG 0.550449 6_3:-94527939 Msa0966340:CDS
CTTGGAGAAGGACCTGAAGA+TGG 0.550707 6_3:-94527927 Msa0966340:CDS
AAATTTAGTTCAAACTTCGT+GGG 0.551738 6_3:-94525267 Msa0966340:CDS
AGCCCGGAATACTATTGCTA+AGG 0.551892 6_3:-94527393 Msa0966340:intron
TCTCAATGCATGACCAAGGT+TGG 0.552996 6_3:-94526405 Msa0966340:CDS
CAGAACGAAGATGGTGGATG+GGG 0.555253 6_3:-94528014 Msa0966340:CDS
AGAAGATGGCTTGAAAATCC+AGG 0.558427 6_3:-94526965 Msa0966340:intron
CTATATGGGAAGAAGTTTGT+GGG 0.559860 6_3:-94527491 Msa0966340:CDS
TTTGCTATACGTATGGCACT+TGG 0.562241 6_3:-94525529 Msa0966340:CDS
ATTTGATTAGGTCAGTGATA+GGG 0.563688 6_3:+94527468 None:intergenic
TGATTATTAACTTCATTCCA+CGG 0.564716 6_3:+94525083 None:intergenic
AAAGGGCCAGCAGATTCTGC+AGG 0.566025 6_3:+94529688 None:intergenic
TCCTCAATTCAAGCTCATGA+TGG 0.566026 6_3:-94529718 Msa0966340:CDS
GAAAACACACAAAACCCTGA+TGG 0.566223 6_3:-94525713 Msa0966340:CDS
CAGGTAGTTGAAAATCCATC+CGG 0.568896 6_3:-94526475 Msa0966340:CDS
AAGTTTGAACTAAATTTGCA+CGG 0.573160 6_3:+94525273 None:intergenic
ATTCCACGGTGTATGGGTGT+AGG 0.573394 6_3:+94525097 None:intergenic
GTACATTGCTTTGAACTCAC+CGG 0.573832 6_3:+94526456 None:intergenic
TGGATGGGGATTCCATATAG+AGG 0.575350 6_3:-94528000 Msa0966340:CDS
TTCTGTCTAAGCTTGGTGAA+AGG 0.576271 6_3:+94527159 None:intergenic
GCCATCATGAGCTTGAATTG+AGG 0.576423 6_3:+94529717 None:intergenic
ATTGATTACAACAATAAGAA+GGG 0.576445 6_3:-94529755 Msa0966340:CDS
TATTATGTTTGATAGCGCGT+TGG 0.580947 6_3:-94527056 Msa0966340:CDS
AGATGGTGAAGACAAGGCAA+TGG 0.581885 6_3:-94527910 Msa0966340:CDS
AAATTCACCCCTATTCATCC+AGG 0.582742 6_3:-94527657 Msa0966340:intron
GTGTACAACCAATTAGCACC+TGG 0.583999 6_3:+94524775 None:intergenic
CAAGGGATCCTGTAACATAG+AGG 0.586621 6_3:+94529448 None:intergenic
TCATGTGCTTTCCGAAGTGT+AGG 0.587144 6_3:+94526514 None:intergenic
TTTCACCAAGCTTAGACAGA+AGG 0.587774 6_3:-94527157 Msa0966340:CDS
TCTTTCTTCAAGAATATCAT+CGG 0.588040 6_3:-94524654 Msa0966340:three_prime_UTR
ATTGCTTTGAACTCACCGGA+TGG 0.590740 6_3:+94526460 None:intergenic
GTCAAAGCAGCTTCCTAATG+GGG 0.591159 6_3:-94525426 Msa0966340:CDS
GGTAGAAACCAGAATTCTGG+TGG 0.591415 6_3:+94527681 None:intergenic
GAGGTCCTAGAACCTCATCA+AGG 0.592674 6_3:+94529430 None:intergenic
CCACTAAACCACCATGGTCA+AGG 0.595228 6_3:+94527868 None:intergenic
TTGCATTGGAAGTGTAGAGA+AGG 0.596365 6_3:-94527079 Msa0966340:CDS
CTGCAAGCCAGAAGTAATCA+GGG 0.596867 6_3:+94526986 None:intergenic
ATGATTCAAGATATGTTATG+GGG 0.597243 6_3:-94527222 Msa0966340:CDS
CTTCCCATATAGATATGACA+TGG 0.597880 6_3:+94527502 None:intergenic
ACCTGAAGATGGTGAAGACA+AGG 0.599140 6_3:-94527916 Msa0966340:CDS
AAGAGTATGGTCCTACACTT+CGG 0.599344 6_3:-94526525 Msa0966340:CDS
CAGCAGATTCTGCAGGCCAG+TGG 0.600116 6_3:+94529695 None:intergenic
CTGCACCGCAGAAGGACTCA+AGG 0.601671 6_3:-94526371 Msa0966340:intron
ATGGGGAAAGTTCTGGGTCA+CGG 0.605144 6_3:-94527835 Msa0966340:intron
GTTTAACTGCTGGTGGAATG+GGG 0.606958 6_3:+94529809 None:intergenic
AGTCAGAGACTTGCCAACCT+TGG 0.608423 6_3:+94526392 None:intergenic
TCGGTATTTATATAATCACC+AGG 0.608586 6_3:-94529388 Msa0966340:intron
ACACCCAACTCATAGAGCTA+AGG 0.609087 6_3:-94525774 Msa0966340:CDS
TCTCTACACTTCCAATGCAA+AGG 0.614361 6_3:+94527082 None:intergenic
CTTGGAGTTTATGAGTGGCG+AGG 0.615223 6_3:-94527717 Msa0966340:CDS
TCAAAGCAGCTTCCTAATGG+GGG 0.615650 6_3:-94525425 Msa0966340:CDS
AAGGGATCCTGTAACATAGA+GGG 0.615864 6_3:+94529449 None:intergenic
GTAGAGGGACTAACAGCTTG+TGG 0.616366 6_3:-94525500 Msa0966340:CDS
GGAAAATGTTGTGCTACTGT+CGG 0.617544 6_3:-94527538 Msa0966340:CDS
TGAAGACACACTGATTGAGA+GGG 0.617821 6_3:-94525965 Msa0966340:CDS
TTATTTGTCAAGCCAAAACA+AGG 0.619533 6_3:-94525390 Msa0966340:intron
ATGAGGTGACAGAACGAAGA+TGG 0.622105 6_3:-94528023 Msa0966340:intron
AATTAATCATGTGCGTTACG+AGG 0.622234 6_3:-94527121 Msa0966340:CDS
GACACATATGCAAAGGATCG+TGG 0.624587 6_3:-94526432 Msa0966340:CDS
GAAAGCACATGACTTCCTGA+AGG 0.625323 6_3:-94526503 Msa0966340:CDS
GAGCTTTGGGTGTCAAATGT+GGG 0.627157 6_3:-94526593 Msa0966340:CDS
TATCTTGAATCATAGGATGT+GGG 0.628079 6_3:+94527232 None:intergenic
GAGAAGAAGATATCATAACA+GGG 0.628365 6_3:-94529783 Msa0966340:CDS
AGGTACTTGGAGTTTATGAG+TGG 0.631997 6_3:-94527722 Msa0966340:CDS
AGAGCTTTGGGTGTCAAATG+TGG 0.632997 6_3:-94526594 Msa0966340:CDS
AGGTCCTAGAACCTCATCAA+GGG 0.639948 6_3:+94529431 None:intergenic
ATGTACAGACACATATGCAA+AGG 0.641280 6_3:-94526439 Msa0966340:CDS
TAAAACCTTGAGTCCTTCTG+CGG 0.644286 6_3:+94526366 None:intergenic
TGTTACAGGATCCCTTGATG+AGG 0.647790 6_3:-94529442 Msa0966340:CDS
TCGCTACAGAGCAGTAATGG+CGG 0.652702 6_3:-94526157 Msa0966340:CDS
GTATGCACCTGGATGAATAG+GGG 0.653207 6_3:+94527650 None:intergenic
CATTACTGCTCTGTAGCGAG+AGG 0.654544 6_3:+94526161 None:intergenic
TAGAATACCAGGATCCATCA+GGG 0.660292 6_3:+94525699 None:intergenic
TTAGTGGCTATTCCATCATG+GGG 0.661744 6_3:-94527852 Msa0966340:CDS
CAAAGCAGCTTCCTAATGGG+GGG 0.662526 6_3:-94525424 Msa0966340:CDS
AATTGGATCCTTGACCATGG+TGG 0.663800 6_3:-94527876 Msa0966340:CDS
GGATGGGGATTCCATATAGA+GGG 0.664160 6_3:-94527999 Msa0966340:CDS
AGGTGACAGAACGAAGATGG+TGG 0.664546 6_3:-94528020 Msa0966340:intron
TGTACAACCAATTAGCACCT+GGG 0.664652 6_3:+94524776 None:intergenic
TTCCCATATAGATATGACAT+GGG 0.670291 6_3:+94527503 None:intergenic
AGAAGAAGATATCATAACAG+GGG 0.679958 6_3:-94529782 Msa0966340:CDS
TAGCTTTGTGAAGAGATACA+GGG 0.686063 6_3:+94525796 None:intergenic
GGTTGAAGACCCGAACTCAG+AGG 0.694258 6_3:-94527034 Msa0966340:CDS
ACATTCTCAATGCATGACCA+AGG 0.704194 6_3:-94526409 Msa0966340:CDS
ATTGTAACTACTCACTACCC+AGG 0.711259 6_3:-94524793 Msa0966340:three_prime_UTR
GAATAGCCACTAAACCACCA+TGG 0.737768 6_3:+94527862 None:intergenic
AGAAATTGGATCCTTGACCA+TGG 0.742771 6_3:-94527879 Msa0966340:CDS
GATCCTACACCCATACACCG+TGG 0.761975 6_3:-94525100 Msa0966340:CDS
CATTGAGCTATATTGCACTG+AGG 0.768445 6_3:-94527953 Msa0966340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATACAAAAGAGAAAATT+TGG - chr6_3:94524858-94524877 Msa0966340:CDS 15.0%
!!! GTTATTTGTTTTTTTTTTCA+GGG + chr6_3:94525177-94525196 None:intergenic 15.0%
!!! AGTTATTTGTTTTTTTTTTC+AGG + chr6_3:94525178-94525197 None:intergenic 15.0%
!! ATATAAGTATATATATAGCA+AGG + chr6_3:94525411-94525430 None:intergenic 15.0%
!! GTTATTACTGAATAATAAAA+TGG + chr6_3:94526171-94526190 None:intergenic 15.0%
!! AAGATATAGATAATATAGAT+TGG + chr6_3:94527110-94527129 None:intergenic 15.0%
!! ATAAAAATACAATATTAACC+TGG + chr6_3:94527516-94527535 None:intergenic 15.0%
!! TAAATATGATTAGTATCTTT+AGG - chr6_3:94527588-94527607 Msa0966340:intron 15.0%
!! AAAATCTGATTCTATTATAT+GGG + chr6_3:94527726-94527745 None:intergenic 15.0%
!!! TAAATGTTAACTATTTTTGT+AGG - chr6_3:94528136-94528155 Msa0966340:intron 15.0%
!!! ATAATATATATACCTTGTTT+TGG + chr6_3:94529085-94529104 None:intergenic 15.0%
!!! TTTTCCTTGTTAATTTAAAT+AGG - chr6_3:94529142-94529161 Msa0966340:intron 15.0%
!! TATACCTATTTAAATTAACA+AGG + chr6_3:94529149-94529168 None:intergenic 15.0%
!! AGAATAGTATATAAAATTGA+TGG + chr6_3:94529464-94529483 None:intergenic 15.0%
!! ATTGATTACAACAATAAGAA+GGG - chr6_3:94524705-94524724 Msa0966340:three_prime_UTR 20.0%
!!! TCTTTTGTATAAAGATCAAA+GGG + chr6_3:94524851-94524870 None:intergenic 20.0%
!!! TTTTATATATAAGAAAAGGC+TGG + chr6_3:94524902-94524921 None:intergenic 20.0%
!!! CCAGTTTTATATATAAGAAA+AGG + chr6_3:94524906-94524925 None:intergenic 20.0%
!!! CCTTTTCTTATATATAAAAC+TGG - chr6_3:94524903-94524922 Msa0966340:CDS 20.0%
!!! AACAATTATAGTTTTGAAGA+GGG + chr6_3:94525281-94525300 None:intergenic 20.0%
!!! AAACAATTATAGTTTTGAAG+AGG + chr6_3:94525282-94525301 None:intergenic 20.0%
!!! TTCATCTTATTAGTTTTTCA+GGG - chr6_3:94525727-94525746 Msa0966340:CDS 20.0%
!! AGTAATTGCTAAAAAATACA+AGG - chr6_3:94525765-94525784 Msa0966340:CDS 20.0%
!! TCAAATGCAATTAAGAAAAA+GGG + chr6_3:94526235-94526254 None:intergenic 20.0%
!! TTCAAATGCAATTAAGAAAA+AGG + chr6_3:94526236-94526255 None:intergenic 20.0%
!! TAATACTTACTAGACAAAAA+GGG + chr6_3:94526304-94526323 None:intergenic 20.0%
!! ATAATACTTACTAGACAAAA+AGG + chr6_3:94526305-94526324 None:intergenic 20.0%
!! TCAAATTAAATATGCATTCA+GGG - chr6_3:94526901-94526920 Msa0966340:intron 20.0%
!! TAGATATATGAAACTGAAAA+TGG - chr6_3:94527178-94527197 Msa0966340:CDS 20.0%
!! TATGATTCAAGATATGTTAT+GGG - chr6_3:94527237-94527256 Msa0966340:CDS 20.0%
!! AAAATTAAATGAAATGTTGC+AGG + chr6_3:94527557-94527576 None:intergenic 20.0%
!! AAGCTAAAGAAATATAATCA+AGG + chr6_3:94527630-94527649 None:intergenic 20.0%
!! TTGATTCTTTCTCTAATTAT+TGG - chr6_3:94527661-94527680 Msa0966340:CDS 20.0%
!! AAATCTGATTCTATTATATG+GGG + chr6_3:94527725-94527744 None:intergenic 20.0%
!! GAAAATCTGATTCTATTATA+TGG + chr6_3:94527727-94527746 None:intergenic 20.0%
!!! CCATGATTTTTTTTTTTTGA+AGG + chr6_3:94527794-94527813 None:intergenic 20.0%
!! CCTTCAAAAAAAAAAAATCA+TGG - chr6_3:94527791-94527810 Msa0966340:intron 20.0%
!!! TTAACAACTGTTAATTTTAG+TGG + chr6_3:94527829-94527848 None:intergenic 20.0%
!!! TTTTTCAAAATATACATGCA+TGG - chr6_3:94528159-94528178 Msa0966340:intron 20.0%
!!! GACTTTCTTTAATTTTTGTT+TGG - chr6_3:94528841-94528860 Msa0966340:intron 20.0%
!! CATAATTTATAATTACCAAG+AGG + chr6_3:94529285-94529304 None:intergenic 20.0%
!!! TGAATGTTTTTGTTACAAAA+AGG - chr6_3:94529329-94529348 Msa0966340:intron 20.0%
!! TAGTATATAAAATTGATGGA+AGG + chr6_3:94529460-94529479 None:intergenic 20.0%
!! AAATTAAAAAATGCAACTAC+AGG - chr6_3:94529513-94529532 Msa0966340:intron 20.0%
!! TCCAATGTCATTTCTAAATA+TGG - chr6_3:94524580-94524599 Msa0966340:three_prime_UTR 25.0%
! ACCATATTTAGAAATGACAT+TGG + chr6_3:94524584-94524603 None:intergenic 25.0%
!! CATTGATTACAACAATAAGA+AGG - chr6_3:94524704-94524723 Msa0966340:three_prime_UTR 25.0%
! ATGGTTGAACAAAAAACAAA+GGG + chr6_3:94524792-94524811 None:intergenic 25.0%
! AATGGTTGAACAAAAAACAA+AGG + chr6_3:94524793-94524812 None:intergenic 25.0%
!!! TTTGTTTTTTGTTCAACCAT+TGG - chr6_3:94524792-94524811 Msa0966340:three_prime_UTR 25.0%
!! CTCTTTTGTATAAAGATCAA+AGG + chr6_3:94524852-94524871 None:intergenic 25.0%
! ACTAATTACTATATGCATAC+AGG - chr6_3:94524982-94525001 Msa0966340:intron 25.0%
! AACATAAGAAGGAAATTGTT+CGG - chr6_3:94525053-94525072 Msa0966340:CDS 25.0%
! ATTTGATCTCAATTATTCTG+AGG + chr6_3:94525149-94525168 None:intergenic 25.0%
! TAACTGTAATCCTAACAAAT+TGG - chr6_3:94525193-94525212 Msa0966340:intron 25.0%
! AACTGTAATCCTAACAAATT+GGG - chr6_3:94525194-94525213 Msa0966340:intron 25.0%
!! TATGATTATCCCAATTTGTT+AGG + chr6_3:94525206-94525225 None:intergenic 25.0%
!!! ACAATTATAGTTTTGAAGAG+GGG + chr6_3:94525280-94525299 None:intergenic 25.0%
! TATATATATAGCAAGGAGTA+GGG + chr6_3:94525404-94525423 None:intergenic 25.0%
! TATATATAAGCACTTCATTG+AGG - chr6_3:94525426-94525445 Msa0966340:CDS 25.0%
!!! GTTCATCTTATTAGTTTTTC+AGG - chr6_3:94525726-94525745 Msa0966340:CDS 25.0%
!! AAGGATGTTTATTTAGGTTT+AGG + chr6_3:94525799-94525818 None:intergenic 25.0%
! AGTGTAAAGGATGTTTATTT+AGG + chr6_3:94525805-94525824 None:intergenic 25.0%
! CAATGTTTGAATTTGATGAA+TGG - chr6_3:94525940-94525959 Msa0966340:intron 25.0%
!!! AATTTGATGAATGGTGTTAT+AGG - chr6_3:94525949-94525968 Msa0966340:intron 25.0%
!!! GGTGAAATAATCTTTTTTTG+CGG - chr6_3:94526106-94526125 Msa0966340:intron 25.0%
! AATAACTTATATGCGAATTG+TGG - chr6_3:94526185-94526204 Msa0966340:CDS 25.0%
! CAAATGCAATTAAGAAAAAG+GGG + chr6_3:94526234-94526253 None:intergenic 25.0%
!!! ATGCATATTTAATTTGACCA+AGG + chr6_3:94526898-94526917 None:intergenic 25.0%
! GTCAAATTAAATATGCATTC+AGG - chr6_3:94526900-94526919 Msa0966340:intron 25.0%
! CATAACATATCTTGAATCAT+AGG + chr6_3:94527238-94527257 None:intergenic 25.0%
! CTATGATTCAAGATATGTTA+TGG - chr6_3:94527236-94527255 Msa0966340:CDS 25.0%
! ATGATTCAAGATATGTTATG+GGG - chr6_3:94527238-94527257 Msa0966340:CDS 25.0%
! TTTATTCATTCAACCAACTA+AGG - chr6_3:94527531-94527550 Msa0966340:CDS 25.0%
! GTGTTCATTGTGAAATTAAT+AGG - chr6_3:94528610-94528629 Msa0966340:intron 25.0%
! TTCAATGAAATGAATTGCTT+TGG + chr6_3:94528730-94528749 None:intergenic 25.0%
! GTTTAACACAATAGATCATT+AGG + chr6_3:94528817-94528836 None:intergenic 25.0%
! AAGTTTGAACTAAATTTGCA+CGG + chr6_3:94529190-94529209 None:intergenic 25.0%
!! AAATTTAGTTCAAACTTCGT+GGG - chr6_3:94529193-94529212 Msa0966340:intron 25.0%
! TGATTATTAACTTCATTCCA+CGG + chr6_3:94529380-94529399 None:intergenic 25.0%
! GTTAATAATCAATTCACAGA+TGG - chr6_3:94529389-94529408 Msa0966340:CDS 25.0%
!! TTTCCGAATTTTGTATTTTC+TGG - chr6_3:94529741-94529760 Msa0966340:CDS 25.0%
! TTTGTAAAAAAACTGTCGAT+TGG - chr6_3:94529767-94529786 Msa0966340:CDS 25.0%
! TCTTTCTTCAAGAATATCAT+CGG - chr6_3:94529806-94529825 Msa0966340:CDS 25.0%
!! TATATATTGCGTTTCTGAAA+AGG + chr6_3:94529877-94529896 None:intergenic 25.0%
AGAGAAGAAGATATCATAAC+AGG - chr6_3:94524676-94524695 Msa0966340:three_prime_UTR 30.0%
GAGAAGAAGATATCATAACA+GGG - chr6_3:94524677-94524696 Msa0966340:three_prime_UTR 30.0%
AGAAGAAGATATCATAACAG+GGG - chr6_3:94524678-94524697 Msa0966340:three_prime_UTR 30.0%
AGTTTCAATCGAAGATCAAA+GGG + chr6_3:94524828-94524847 None:intergenic 30.0%
TACTATATGCATACAGGTAA+TGG - chr6_3:94524988-94525007 Msa0966340:intron 30.0%
ACAATTTCCTTCTTATGTTG+AGG + chr6_3:94525052-94525071 None:intergenic 30.0%
TCGGTATTTATATAATCACC+AGG - chr6_3:94525072-94525091 Msa0966340:CDS 30.0%
TGCATGATTTACATAATACC+TGG + chr6_3:94525093-94525112 None:intergenic 30.0%
!!! CAATTATAGTTTTGAAGAGG+GGG + chr6_3:94525279-94525298 None:intergenic 30.0%
! ACATTGTCTGAAGCAAAATA+GGG + chr6_3:94525369-94525388 None:intergenic 30.0%
! AACATTGTCTGAAGCAAAAT+AGG + chr6_3:94525370-94525389 None:intergenic 30.0%
ATATATATAGCAAGGAGTAG+GGG + chr6_3:94525403-94525422 None:intergenic 30.0%
GTATATATATAGCAAGGAGT+AGG + chr6_3:94525405-94525424 None:intergenic 30.0%
TGTCTATTGTTTAGTGAAGA+TGG + chr6_3:94525513-94525532 None:intergenic 30.0%
AGCATCAAAGCTTCATTATA+TGG + chr6_3:94525599-94525618 None:intergenic 30.0%
!!! ATTAGTTTTTCAGGGAGAAT+AGG - chr6_3:94525735-94525754 Msa0966340:CDS 30.0%
TTCTTTGTGATAGAGTGTAA+AGG + chr6_3:94525818-94525837 None:intergenic 30.0%
!! CACAAAGAAAGCATCATAAT+AGG - chr6_3:94525829-94525848 Msa0966340:CDS 30.0%
CACAAACATTGCAAAACTTT+GGG + chr6_3:94525860-94525879 None:intergenic 30.0%
TCACAAACATTGCAAAACTT+TGG + chr6_3:94525861-94525880 None:intergenic 30.0%
AATTAAATAGCACACTAACC+AGG - chr6_3:94526028-94526047 Msa0966340:intron 30.0%
! ACCAGGATCAATTTAAGTTT+AGG - chr6_3:94526045-94526064 Msa0966340:intron 30.0%
TCCTAAACTTAAATTGATCC+TGG + chr6_3:94526049-94526068 None:intergenic 30.0%
AGGATTAAGCTAATTGTGTA+AGG - chr6_3:94526065-94526084 Msa0966340:intron 30.0%
TAAGCTAATTGTGTAAGGTT+TGG - chr6_3:94526070-94526089 Msa0966340:intron 30.0%
AATTAATGCAAGGAAGTCTT+AGG + chr6_3:94526261-94526280 None:intergenic 30.0%
TCAACTCATCGATAAAATGA+TGG - chr6_3:94526336-94526355 Msa0966340:intron 30.0%
TTGACAGTATATGACTTTCT+TGG + chr6_3:94526371-94526390 None:intergenic 30.0%
TTTCAATACCATTTGTGATG+AGG - chr6_3:94526420-94526439 Msa0966340:CDS 30.0%
TAAGCAATCACGCTATATAT+AGG - chr6_3:94526718-94526737 Msa0966340:intron 30.0%
ATGGTTGCATATAGAAGTTA+AGG + chr6_3:94526861-94526880 None:intergenic 30.0%
TTCCCATATAGATATGACAT+GGG + chr6_3:94526960-94526979 None:intergenic 30.0%
ATTTGATTAGGTCAGTGATA+GGG + chr6_3:94526995-94527014 None:intergenic 30.0%
AACCTTATGATCAAATCAAC+TGG - chr6_3:94527039-94527058 Msa0966340:CDS 30.0%
!! TTCCAGTTGATTTGATCATA+AGG + chr6_3:94527044-94527063 None:intergenic 30.0%
AAACCTTAGCAATAGTATTC+CGG + chr6_3:94527073-94527092 None:intergenic 30.0%
TATCTTGAATCATAGGATGT+GGG + chr6_3:94527231-94527250 None:intergenic 30.0%
ATATCTTGAATCATAGGATG+TGG + chr6_3:94527232-94527251 None:intergenic 30.0%
GAGAAAGAATCAACTAAGAA+AGG + chr6_3:94527654-94527673 None:intergenic 30.0%
TCTAATTATTGGAACTGACT+AGG - chr6_3:94527672-94527691 Msa0966340:CDS 30.0%
TAATAATGAATGCAGAGCTT+TGG - chr6_3:94527853-94527872 Msa0966340:CDS 30.0%
AATAATGAATGCAGAGCTTT+GGG - chr6_3:94527854-94527873 Msa0966340:CDS 30.0%
ATATTCATGAAAACACATGC+AGG - chr6_3:94528191-94528210 Msa0966340:intron 30.0%
TGATCTTGTTGGAGAAAAAT+TGG - chr6_3:94528242-94528261 Msa0966340:intron 30.0%
! AACCAACTGTAAGAATTTTG+AGG + chr6_3:94528345-94528364 None:intergenic 30.0%
AAATTCTTACAGTTGGTTAG+AGG - chr6_3:94528347-94528366 Msa0966340:intron 30.0%
!! TGAAATGAATTGCTTTGGAA+AGG + chr6_3:94528725-94528744 None:intergenic 30.0%
TAACACAATAGATCATTAGG+TGG + chr6_3:94528814-94528833 None:intergenic 30.0%
! AAATTGACAAGCTTTTTGCA+AGG + chr6_3:94529009-94529028 None:intergenic 30.0%
TTATTTGTCAAGCCAAAACA+AGG - chr6_3:94529070-94529089 Msa0966340:intron 30.0%
! CAAATTTAGTTCAAACTTCG+TGG - chr6_3:94529192-94529211 Msa0966340:intron 30.0%
ATTTATAATTACCAAGAGGC+AGG + chr6_3:94529281-94529300 None:intergenic 30.0%
!! AGATAACAGGAGTATTTATG+AGG - chr6_3:94529536-94529555 Msa0966340:intron 30.0%
TAGTGAGTAGTTACAATTCA+AGG + chr6_3:94529664-94529683 None:intergenic 30.0%
CTGCCAGAAAATACAAAATT+CGG + chr6_3:94529747-94529766 None:intergenic 30.0%
GAGTTTCAATCGAAGATCAA+AGG + chr6_3:94524829-94524848 None:intergenic 35.0%
ACAAATATCAATACGTCCAG+TGG + chr6_3:94524961-94524980 None:intergenic 35.0%
TAGACTTAACTGAACGAGTT+AGG - chr6_3:94525224-94525243 Msa0966340:intron 35.0%
CTATAATTGTTTGTCGACAC+TGG - chr6_3:94525290-94525309 Msa0966340:CDS 35.0%
! CATTGTCTGAAGCAAAATAG+GGG + chr6_3:94525368-94525387 None:intergenic 35.0%
AACATCTTTGATTCTGAGCA+GGG + chr6_3:94525481-94525500 None:intergenic 35.0%
TATCTATGTTACCGATGTGA+AGG + chr6_3:94525567-94525586 None:intergenic 35.0%
! AACTATATGTGTTTCTGCCA+AGG - chr6_3:94525665-94525684 Msa0966340:intron 35.0%
! TGTCTTGAATTTTGAGCTGT+GGG + chr6_3:94525910-94525929 None:intergenic 35.0%
! ATGTCTTGAATTTTGAGCTG+TGG + chr6_3:94525911-94525930 None:intergenic 35.0%
ACTTATATGCGAATTGTGGT+CGG - chr6_3:94526189-94526208 Msa0966340:CDS 35.0%
CATGTGTGGAAATTAATGCA+AGG + chr6_3:94526271-94526290 None:intergenic 35.0%
! CTCATCGATAAAATGATGGA+AGG - chr6_3:94526340-94526359 Msa0966340:intron 35.0%
TTTAGTGGCTATTCCATCAT+GGG - chr6_3:94526607-94526626 Msa0966340:intron 35.0%
TCACGCTATATATAGGTACT+TGG - chr6_3:94526725-94526744 Msa0966340:intron 35.0%
TTTGGTAGAAACCAGAATTC+TGG + chr6_3:94526785-94526804 None:intergenic 35.0%
ACCTAGGTCCTACATTAATT+TGG - chr6_3:94526831-94526850 Msa0966340:intron 35.0%
CCTAGGTCCTACATTAATTT+GGG - chr6_3:94526832-94526851 Msa0966340:intron 35.0%
! CTAGGTCCTACATTAATTTG+GGG - chr6_3:94526833-94526852 Msa0966340:intron 35.0%
AAGGAACCCCAAATTAATGT+AGG + chr6_3:94526842-94526861 None:intergenic 35.0%
! CAAGGCATTAGACAAGATAA+TGG + chr6_3:94526880-94526899 None:intergenic 35.0%
CATTATCTTGTCTAATGCCT+TGG - chr6_3:94526878-94526897 Msa0966340:intron 35.0%
ATGCCCATGTCATATCTATA+TGG - chr6_3:94526954-94526973 Msa0966340:intron 35.0%
TGCCCATGTCATATCTATAT+GGG - chr6_3:94526955-94526974 Msa0966340:intron 35.0%
CTTCCCATATAGATATGACA+TGG + chr6_3:94526961-94526980 None:intergenic 35.0%
TCTATATGGGAAGAAGTTTG+TGG - chr6_3:94526968-94526987 Msa0966340:CDS 35.0%
CTATATGGGAAGAAGTTTGT+GGG - chr6_3:94526969-94526988 Msa0966340:CDS 35.0%
GATTTGATTAGGTCAGTGAT+AGG + chr6_3:94526996-94527015 None:intergenic 35.0%
CTTCTCTCAGTGATTTGATT+AGG + chr6_3:94527007-94527026 None:intergenic 35.0%
AACCTTAGCAATAGTATTCC+GGG + chr6_3:94527072-94527091 None:intergenic 35.0%
TGAAAATGGCATGCAATTTC+AGG - chr6_3:94527192-94527211 Msa0966340:CDS 35.0%
ATGGGGATTTCTTTATCATG+TGG - chr6_3:94527255-94527274 Msa0966340:intron 35.0%
TGGGGATTTCTTTATCATGT+GGG - chr6_3:94527256-94527275 Msa0966340:intron 35.0%
AATTAATCATGTGCGTTACG+AGG - chr6_3:94527339-94527358 Msa0966340:intron 35.0%
AACAGTAGATACCTTTGCAT+TGG - chr6_3:94527367-94527386 Msa0966340:intron 35.0%
!! TATTATGTTTGATAGCGCGT+TGG - chr6_3:94527404-94527423 Msa0966340:CDS 35.0%
!! ATTATGTTTGATAGCGCGTT+GGG - chr6_3:94527405-94527424 Msa0966340:CDS 35.0%
ATGTACAGACACATATGCAA+AGG - chr6_3:94528021-94528040 Msa0966340:intron 35.0%
AAAATGCCAACTGATCTTGT+TGG - chr6_3:94528231-94528250 Msa0966340:intron 35.0%
! TTTTCTCCAACAAGATCAGT+TGG + chr6_3:94528240-94528259 None:intergenic 35.0%
AGCCTCAAAATTCTTACAGT+TGG - chr6_3:94528340-94528359 Msa0966340:intron 35.0%
CATGCATGCATAGAATTAGT+TGG + chr6_3:94528442-94528461 None:intergenic 35.0%
GTGTCTTCAAAGAATTCAGT+TGG + chr6_3:94528484-94528503 None:intergenic 35.0%
!! TAGCTTTGTGAAGAGATACA+GGG + chr6_3:94528667-94528686 None:intergenic 35.0%
!! TTTCCTTAGCTCTATGAGTT+GGG + chr6_3:94528692-94528711 None:intergenic 35.0%
!! ATTTCCTTAGCTCTATGAGT+TGG + chr6_3:94528693-94528712 None:intergenic 35.0%
AGAGTAGAAGATAGAATACC+AGG + chr6_3:94528775-94528794 None:intergenic 35.0%
ATCAATTCACAGATGGAAGA+TGG - chr6_3:94529396-94529415 Msa0966340:CDS 35.0%
CTACACTAATTACCTGTTGT+GGG + chr6_3:94529428-94529447 None:intergenic 35.0%
TCGATATGATGAGTAGTTCA+GGG + chr6_3:94529569-94529588 None:intergenic 35.0%
TTCGATATGATGAGTAGTTC+AGG + chr6_3:94529570-94529589 None:intergenic 35.0%
ATCGAAACATCTTTCCCATA+TGG - chr6_3:94529584-94529603 Msa0966340:intron 35.0%
TCGAAACATCTTTCCCATAT+GGG - chr6_3:94529585-94529604 Msa0966340:intron 35.0%
AGTTTAACTGCTGGTGGAAT+GGG + chr6_3:94524655-94524674 None:intergenic 40.0%
TCTTCTCTCAGTTTAACTGC+TGG + chr6_3:94524664-94524683 None:intergenic 40.0%
TCCTCAATTCAAGCTCATGA+TGG - chr6_3:94524742-94524761 Msa0966340:three_prime_UTR 40.0%
! TTGCTGATATTGATGACCAC+TGG - chr6_3:94524942-94524961 Msa0966340:intron 40.0%
AAGGGATCCTGTAACATAGA+GGG + chr6_3:94525014-94525033 None:intergenic 40.0%
! TCTAGGACCTCAACATAAGA+AGG - chr6_3:94525042-94525061 Msa0966340:intron 40.0%
AGGAATGCAAATGTGAGTGA+TGG + chr6_3:94525327-94525346 None:intergenic 40.0%
GGAAGGAGTCAAAGTAGAAA+AGG + chr6_3:94525347-94525366 None:intergenic 40.0%
GGCAAAAATCCCTTTAGATG+AGG - chr6_3:94525447-94525466 Msa0966340:CDS 40.0%
ACATCTTTGATTCTGAGCAG+GGG + chr6_3:94525480-94525499 None:intergenic 40.0%
CAACATCTTTGATTCTGAGC+AGG + chr6_3:94525482-94525501 None:intergenic 40.0%
TAAAGCTGCTGCATAGACAT+AGG + chr6_3:94525694-94525713 None:intergenic 40.0%
!! AGCAGCTTTAGAGTATACAG+AGG - chr6_3:94525704-94525723 Msa0966340:intron 40.0%
GATCTGATATCAACTTCCTC+TGG - chr6_3:94525879-94525898 Msa0966340:intron 40.0%
AGGTTTGGATAGACTAAGTG+AGG - chr6_3:94526085-94526104 Msa0966340:intron 40.0%
! AGGGTCTTTTGTATCATGTG+TGG + chr6_3:94526285-94526304 None:intergenic 40.0%
TTCTGTCACCTCATCACAAA+TGG + chr6_3:94526431-94526450 None:intergenic 40.0%
TTGTGCTATGACCCTCTATA+TGG + chr6_3:94526475-94526494 None:intergenic 40.0%
CATTGAGCTATATTGCACTG+AGG - chr6_3:94526507-94526526 Msa0966340:CDS 40.0%
CAATGGAGAGATGCAGAAAT+TGG - chr6_3:94526567-94526586 Msa0966340:CDS 40.0%
AGAAATTGGATCCTTGACCA+TGG - chr6_3:94526581-94526600 Msa0966340:CDS 40.0%
GTTTAGTGGCTATTCCATCA+TGG - chr6_3:94526606-94526625 Msa0966340:intron 40.0%
TTAGTGGCTATTCCATCATG+GGG - chr6_3:94526608-94526627 Msa0966340:intron 40.0%
AGGTACTTGGAGTTTATGAG+TGG - chr6_3:94526738-94526757 Msa0966340:intron 40.0%
! GGATGAATAGGGGTGAATTT+TGG + chr6_3:94526803-94526822 None:intergenic 40.0%
AAATTCACCCCTATTCATCC+AGG - chr6_3:94526803-94526822 Msa0966340:intron 40.0%
CCCAAATTAATGTAGGACCT+AGG + chr6_3:94526835-94526854 None:intergenic 40.0%
! GGAAAATGTTGTGCTACTGT+CGG - chr6_3:94526922-94526941 Msa0966340:intron 40.0%
AAATCAACTGGAACAAAGCC+CGG - chr6_3:94527051-94527070 Msa0966340:CDS 40.0%
AAATGGCATGCAATTTCAGG+AGG - chr6_3:94527195-94527214 Msa0966340:CDS 40.0%
AAAGGCCAGCAATTCAGAAA+AGG + chr6_3:94527286-94527305 None:intergenic 40.0%
! TTCTGTCTAAGCTTGGTGAA+AGG + chr6_3:94527304-94527323 None:intergenic 40.0%
TTTCACCAAGCTTAGACAGA+AGG - chr6_3:94527303-94527322 Msa0966340:intron 40.0%
TAATGCCTTCTGTCTAAGCT+TGG + chr6_3:94527311-94527330 None:intergenic 40.0%
TCTCTACACTTCCAATGCAA+AGG + chr6_3:94527381-94527400 None:intergenic 40.0%
! TTGCATTGGAAGTGTAGAGA+AGG - chr6_3:94527381-94527400 Msa0966340:intron 40.0%
AGTTTGTATGCCTCTGAGTT+CGG + chr6_3:94527439-94527458 None:intergenic 40.0%
AGAAGATGGCTTGAAAATCC+AGG - chr6_3:94527495-94527514 Msa0966340:CDS 40.0%
TGTAACGTGAGTGAAGAGTA+TGG - chr6_3:94527922-94527941 Msa0966340:CDS 40.0%
! AAGAGTATGGTCCTACACTT+CGG - chr6_3:94527935-94527954 Msa0966340:CDS 40.0%
! TGGATTTTCAACTACCTGTG+AGG + chr6_3:94527983-94528002 None:intergenic 40.0%
CAGGTAGTTGAAAATCCATC+CGG - chr6_3:94527985-94528004 Msa0966340:CDS 40.0%
! GTACATTGCTTTGAACTCAC+CGG + chr6_3:94528007-94528026 None:intergenic 40.0%
ACATTCTCAATGCATGACCA+AGG - chr6_3:94528051-94528070 Msa0966340:intron 40.0%
TAAAACCTTGAGTCCTTCTG+CGG + chr6_3:94528097-94528116 None:intergenic 40.0%
! CATTTTTGACAACAGGAGTG+CGG + chr6_3:94528217-94528236 None:intergenic 40.0%
! CAGTTGGCATTTTTGACAAC+AGG + chr6_3:94528224-94528243 None:intergenic 40.0%
! TTGAAGACACACTGATTGAG+AGG - chr6_3:94528494-94528513 Msa0966340:intron 40.0%
! TGAAGACACACTGATTGAGA+GGG - chr6_3:94528495-94528514 Msa0966340:intron 40.0%
AATAGGTATGTTGAGTGCAC+TGG - chr6_3:94528627-94528646 Msa0966340:intron 40.0%
!! GTAGCTTTGTGAAGAGATAC+AGG + chr6_3:94528668-94528687 None:intergenic 40.0%
GAAAACACACAAAACCCTGA+TGG - chr6_3:94528747-94528766 Msa0966340:intron 40.0%
TAGAATACCAGGATCCATCA+GGG + chr6_3:94528764-94528783 None:intergenic 40.0%
ATAGAATACCAGGATCCATC+AGG + chr6_3:94528765-94528784 None:intergenic 40.0%
TAGTACATACACTACTCCAC+AGG - chr6_3:94528892-94528911 Msa0966340:intron 40.0%
!! TGGGGAATTTGCTATACGTA+TGG - chr6_3:94528924-94528943 Msa0966340:intron 40.0%
! TTTGCTATACGTATGGCACT+TGG - chr6_3:94528931-94528950 Msa0966340:intron 40.0%
TTTGCAAGGAAGGACTGTTA+CGG + chr6_3:94528995-94529014 None:intergenic 40.0%
! TGACAAGCTTTTTGCAAGGA+AGG + chr6_3:94529005-94529024 None:intergenic 40.0%
TTGTCAAAGCAGCTTCCTAA+TGG - chr6_3:94529032-94529051 Msa0966340:intron 40.0%
TGTCAAAGCAGCTTCCTAAT+GGG - chr6_3:94529033-94529052 Msa0966340:intron 40.0%
AATTTGCACGGTTGTCTTCT+AGG + chr6_3:94529178-94529197 None:intergenic 40.0%
AACTTCATTCCACGGTGTAT+GGG + chr6_3:94529372-94529391 None:intergenic 40.0%
TAACTTCATTCCACGGTGTA+TGG + chr6_3:94529373-94529392 None:intergenic 40.0%
GCTACACTAATTACCTGTTG+TGG + chr6_3:94529429-94529448 None:intergenic 40.0%
ATGCAACTACAGGAGATAAC+AGG - chr6_3:94529523-94529542 Msa0966340:intron 40.0%
GAATTTGTGCAGACAAGACT+CGG + chr6_3:94529630-94529649 None:intergenic 40.0%
ACAATTCAAGGTGCAGCATT+TGG + chr6_3:94529652-94529671 None:intergenic 40.0%
ATTGTAACTACTCACTACCC+AGG - chr6_3:94529667-94529686 Msa0966340:intron 40.0%
TGTACAACCAATTAGCACCT+GGG + chr6_3:94529687-94529706 None:intergenic 40.0%
GTTTAACTGCTGGTGGAATG+GGG + chr6_3:94524654-94524673 None:intergenic 45.0%
CAGTTTAACTGCTGGTGGAA+TGG + chr6_3:94524656-94524675 None:intergenic 45.0%
TCTCTCAGTTTAACTGCTGG+TGG + chr6_3:94524661-94524680 None:intergenic 45.0%
GCCATCATGAGCTTGAATTG+AGG + chr6_3:94524746-94524765 None:intergenic 45.0%
AAAGGGACTTCACTCACCAA+TGG + chr6_3:94524811-94524830 None:intergenic 45.0%
GTAATGGCCCTCTATGTTAC+AGG - chr6_3:94525004-94525023 Msa0966340:intron 45.0%
CAAGGGATCCTGTAACATAG+AGG + chr6_3:94525015-94525034 None:intergenic 45.0%
TGTTACAGGATCCCTTGATG+AGG - chr6_3:94525018-94525037 Msa0966340:intron 45.0%
AGGTCCTAGAACCTCATCAA+GGG + chr6_3:94525032-94525051 None:intergenic 45.0%
!!! GTTTTGAAGAGGGGGATGAA+TGG + chr6_3:94525271-94525290 None:intergenic 45.0%
! TGCAAATGTGAGTGATGGTG+AGG + chr6_3:94525322-94525341 None:intergenic 45.0%
! GTCTGAAGCAAAATAGGGGA+AGG + chr6_3:94525364-94525383 None:intergenic 45.0%
GGAAGGGATCCTCATCTAAA+GGG + chr6_3:94525459-94525478 None:intergenic 45.0%
TTTGATTCTGAGCAGGGGAA+GGG + chr6_3:94525475-94525494 None:intergenic 45.0%
TACCGATGTGAAGGAGGATA+CGG + chr6_3:94525558-94525577 None:intergenic 45.0%
CTATGTTACCGATGTGAAGG+AGG + chr6_3:94525564-94525583 None:intergenic 45.0%
TGCATAGACATAGGCTACCT+TGG + chr6_3:94525685-94525704 None:intergenic 45.0%
ATGAGGTGACAGAACGAAGA+TGG - chr6_3:94526437-94526456 Msa0966340:CDS 45.0%
!! ACAGAACGAAGATGGTGGAT+GGG - chr6_3:94526445-94526464 Msa0966340:CDS 45.0%
TGGATGGGGATTCCATATAG+AGG - chr6_3:94526460-94526479 Msa0966340:CDS 45.0%
GGATGGGGATTCCATATAGA+GGG - chr6_3:94526461-94526480 Msa0966340:CDS 45.0%
GAGGGTCATAGCACAATGTT+TGG - chr6_3:94526479-94526498 Msa0966340:CDS 45.0%
TATATTGCACTGAGGCTGCT+TGG - chr6_3:94526515-94526534 Msa0966340:CDS 45.0%
ACCTGAAGATGGTGAAGACA+AGG - chr6_3:94526544-94526563 Msa0966340:CDS 45.0%
AGATGGTGAAGACAAGGCAA+TGG - chr6_3:94526550-94526569 Msa0966340:CDS 45.0%
AATTGGATCCTTGACCATGG+TGG - chr6_3:94526584-94526603 Msa0966340:CDS 45.0%
GAATAGCCACTAAACCACCA+TGG + chr6_3:94526601-94526620 None:intergenic 45.0%
TTCCATCATGGGGAAAGTTC+TGG - chr6_3:94526618-94526637 Msa0966340:intron 45.0%
TCCATCATGGGGAAAGTTCT+GGG - chr6_3:94526619-94526638 Msa0966340:intron 45.0%
ATCCACTTCCACCAGAATTC+TGG - chr6_3:94526771-94526790 Msa0966340:intron 45.0%
AACCAGAATTCTGGTGGAAG+TGG + chr6_3:94526776-94526795 None:intergenic 45.0%
GGTAGAAACCAGAATTCTGG+TGG + chr6_3:94526782-94526801 None:intergenic 45.0%
GTATGCACCTGGATGAATAG+GGG + chr6_3:94526813-94526832 None:intergenic 45.0%
GGTATGCACCTGGATGAATA+GGG + chr6_3:94526814-94526833 None:intergenic 45.0%
AGGTATGCACCTGGATGAAT+AGG + chr6_3:94526815-94526834 None:intergenic 45.0%
ATTCATCCAGGTGCATACCT+AGG - chr6_3:94526815-94526834 Msa0966340:intron 45.0%
AGCCCGGAATACTATTGCTA+AGG - chr6_3:94527067-94527086 Msa0966340:CDS 45.0%
TGCTAAGGTTTGTACGTGTG+TGG - chr6_3:94527082-94527101 Msa0966340:CDS 45.0%
! GAGAGCCTTTTCTGAATTGC+TGG - chr6_3:94527278-94527297 Msa0966340:intron 45.0%
GTTTGTATGCCTCTGAGTTC+GGG + chr6_3:94527438-94527457 None:intergenic 45.0%
CCAGAAGTAATCAGGGATTC+GGG + chr6_3:94527470-94527489 None:intergenic 45.0%
GCCAGAAGTAATCAGGGATT+CGG + chr6_3:94527471-94527490 None:intergenic 45.0%
CTGCAAGCCAGAAGTAATCA+GGG + chr6_3:94527477-94527496 None:intergenic 45.0%
TCTGCAAGCCAGAAGTAATC+AGG + chr6_3:94527478-94527497 None:intergenic 45.0%
!! TACTTCTGGCTTGCAGAAGA+TGG - chr6_3:94527481-94527500 Msa0966340:CDS 45.0%
GAAATGTTGCAGGCCTTAGT+TGG + chr6_3:94527547-94527566 None:intergenic 45.0%
!! AGAGCTTTGGGTGTCAAATG+TGG - chr6_3:94527866-94527885 Msa0966340:CDS 45.0%
!! GAGCTTTGGGTGTCAAATGT+GGG - chr6_3:94527867-94527886 Msa0966340:CDS 45.0%
TCATGTGCTTTCCGAAGTGT+AGG + chr6_3:94527949-94527968 None:intergenic 45.0%
! GAAAGCACATGACTTCCTGA+AGG - chr6_3:94527957-94527976 Msa0966340:CDS 45.0%
! ATTGCTTTGAACTCACCGGA+TGG + chr6_3:94528003-94528022 None:intergenic 45.0%
GACACATATGCAAAGGATCG+TGG - chr6_3:94528028-94528047 Msa0966340:intron 45.0%
TCTCAATGCATGACCAAGGT+TGG - chr6_3:94528055-94528074 Msa0966340:intron 45.0%
!!! AATTTTGAGGCTCCCAAGCA+GGG + chr6_3:94528332-94528351 None:intergenic 45.0%
ACACCCAACTCATAGAGCTA+AGG - chr6_3:94528686-94528705 Msa0966340:intron 45.0%
CATACACTACTCCACAGGTA+CGG - chr6_3:94528897-94528916 Msa0966340:intron 45.0%
GTCAAAGCAGCTTCCTAATG+GGG - chr6_3:94529034-94529053 Msa0966340:intron 45.0%
TCAAAGCAGCTTCCTAATGG+GGG - chr6_3:94529035-94529054 Msa0966340:intron 45.0%
!! TGGGCTTTGTTGTCCCTTAT+CGG - chr6_3:94529212-94529231 Msa0966340:intron 45.0%
AGATGGAGATTTCCCACAAC+AGG - chr6_3:94529413-94529432 Msa0966340:CDS 45.0%
ATCTTTCCCATATGGGCTCT+GGG - chr6_3:94529592-94529611 Msa0966340:intron 45.0%
GTGTACAACCAATTAGCACC+TGG + chr6_3:94529688-94529707 None:intergenic 45.0%
!! AATTTAATATAAATTAATCA+TGG - chr6_3:94527757-94527776 Msa0966340:intron 5.0%
TTCAAGCTCATGATGGCCAC+TGG - chr6_3:94524749-94524768 Msa0966340:three_prime_UTR 50.0%
GGATCCCTTGATGAGGTTCT+AGG - chr6_3:94525025-94525044 Msa0966340:intron 50.0%
GAGGTCCTAGAACCTCATCA+AGG + chr6_3:94525033-94525052 None:intergenic 50.0%
GGGAAGGGATCCTCATCTAA+AGG + chr6_3:94525460-94525479 None:intergenic 50.0%
CTTTGATTCTGAGCAGGGGA+AGG + chr6_3:94525476-94525495 None:intergenic 50.0%
CTCCGTATCCTCCTTCACAT+CGG - chr6_3:94525553-94525572 Msa0966340:intron 50.0%
! TGAGCTGTGGGTTATTCCAG+AGG + chr6_3:94525898-94525917 None:intergenic 50.0%
TGCGGTCATCATTGTGCACA+AGG - chr6_3:94526124-94526143 Msa0966340:CDS 50.0%
AGGTGACAGAACGAAGATGG+TGG - chr6_3:94526440-94526459 Msa0966340:CDS 50.0%
!! GACAGAACGAAGATGGTGGA+TGG - chr6_3:94526444-94526463 Msa0966340:CDS 50.0%
!! CAGAACGAAGATGGTGGATG+GGG - chr6_3:94526446-94526465 Msa0966340:CDS 50.0%
CTTGGAGAAGGACCTGAAGA+TGG - chr6_3:94526533-94526552 Msa0966340:CDS 50.0%
GCCTTGTCTTCACCATCTTC+AGG + chr6_3:94526548-94526567 None:intergenic 50.0%
CCACTAAACCACCATGGTCA+AGG + chr6_3:94526595-94526614 None:intergenic 50.0%
CCTTGACCATGGTGGTTTAG+TGG - chr6_3:94526592-94526611 Msa0966340:CDS 50.0%
ACCCAGAACTTTCCCCATGA+TGG + chr6_3:94526623-94526642 None:intergenic 50.0%
!! ATGGGGAAAGTTCTGGGTCA+CGG - chr6_3:94526625-94526644 Msa0966340:intron 50.0%
CTTGGAGTTTATGAGTGGCG+AGG - chr6_3:94526743-94526762 Msa0966340:intron 50.0%
CCCGAATCCCTGATTACTTC+TGG - chr6_3:94527467-94527486 Msa0966340:CDS 50.0%
AGTCAGAGACTTGCCAACCT+TGG + chr6_3:94528071-94528090 None:intergenic 50.0%
CATTACTGCTCTGTAGCGAG+AGG + chr6_3:94528302-94528321 None:intergenic 50.0%
CTCTCGCTACAGAGCAGTAA+TGG - chr6_3:94528300-94528319 Msa0966340:intron 50.0%
TCGCTACAGAGCAGTAATGG+CGG - chr6_3:94528303-94528322 Msa0966340:intron 50.0%
!!! GAATTTTGAGGCTCCCAAGC+AGG + chr6_3:94528333-94528352 None:intergenic 50.0%
! CACAAAACCCTGATGGATCC+TGG - chr6_3:94528754-94528773 Msa0966340:intron 50.0%
!! TGGCACTTGGTTTGCTGTAG+AGG - chr6_3:94528944-94528963 Msa0966340:intron 50.0%
!! GGCACTTGGTTTGCTGTAGA+GGG - chr6_3:94528945-94528964 Msa0966340:intron 50.0%
GTAGAGGGACTAACAGCTTG+TGG - chr6_3:94528960-94528979 Msa0966340:intron 50.0%
CAAAGCAGCTTCCTAATGGG+GGG - chr6_3:94529036-94529055 Msa0966340:intron 50.0%
TTGTTGTCCCTTATCGGTGC+AGG - chr6_3:94529218-94529237 Msa0966340:intron 50.0%
TGTTGTCCCTTATCGGTGCA+GGG - chr6_3:94529219-94529238 Msa0966340:intron 50.0%
ATTCCACGGTGTATGGGTGT+AGG + chr6_3:94529366-94529385 None:intergenic 50.0%
CATCTTTCCCATATGGGCTC+TGG - chr6_3:94529591-94529610 Msa0966340:intron 50.0%
TACTCTCCCAGAGCCCATAT+GGG + chr6_3:94529601-94529620 None:intergenic 50.0%
ATACTCTCCCAGAGCCCATA+TGG + chr6_3:94529602-94529621 None:intergenic 50.0%
CTCACTACCCAGGTGCTAAT+TGG - chr6_3:94529677-94529696 Msa0966340:CDS 50.0%
AAAGGGCCAGCAGATTCTGC+AGG + chr6_3:94524775-94524794 None:intergenic 55.0%
TATGCGAATTGTGGTCGGCG+AGG - chr6_3:94526194-94526213 Msa0966340:CDS 55.0%
GTAGGACCTAGGTATGCACC+TGG + chr6_3:94526824-94526843 None:intergenic 55.0%
GGTTGAAGACCCGAACTCAG+AGG - chr6_3:94527426-94527445 Msa0966340:CDS 55.0%
TGACTTCCTGAAGGCCTCAC+AGG - chr6_3:94527966-94527985 Msa0966340:CDS 55.0%
CAACTACCTGTGAGGCCTTC+AGG + chr6_3:94527975-94527994 None:intergenic 55.0%
CGCTACAGAGCAGTAATGGC+GGG - chr6_3:94528304-94528323 Msa0966340:intron 55.0%
!! TAATGGCGGGTTCCCTGCTT+GGG - chr6_3:94528317-94528336 Msa0966340:intron 55.0%
TACTCCACAGGTACGGCTGT+TGG - chr6_3:94528904-94528923 Msa0966340:intron 55.0%
ACTCCACAGGTACGGCTGTT+GGG - chr6_3:94528905-94528924 Msa0966340:intron 55.0%
! AACCTGCCCTGCACCGATAA+GGG + chr6_3:94529228-94529247 None:intergenic 55.0%
! TAACCTGCCCTGCACCGATA+AGG + chr6_3:94529229-94529248 None:intergenic 55.0%
CTAGCTTAGCTCCTGCCTCT+TGG - chr6_3:94529267-94529286 Msa0966340:intron 55.0%
GATCCTACACCCATACACCG+TGG - chr6_3:94529360-94529379 Msa0966340:intron 55.0%
CAGCAGATTCTGCAGGCCAG+TGG + chr6_3:94524768-94524787 None:intergenic 60.0%
! CACTGGCCTGCAGAATCTGC+TGG - chr6_3:94524766-94524785 Msa0966340:three_prime_UTR 60.0%
GCACTGAGGCTGCTTGGAGA+AGG - chr6_3:94526521-94526540 Msa0966340:CDS 60.0%
GTCTCTGACTGCACCGCAGA+AGG - chr6_3:94528081-94528100 Msa0966340:intron 60.0%
CTGCACCGCAGAAGGACTCA+AGG - chr6_3:94528089-94528108 Msa0966340:intron 60.0%
!! GTAATGGCGGGTTCCCTGCT+TGG - chr6_3:94528316-94528335 Msa0966340:intron 60.0%
CTCCACAGGTACGGCTGTTG+GGG - chr6_3:94528906-94528925 Msa0966340:intron 60.0%
TTCCCCAACAGCCGTACCTG+TGG + chr6_3:94528911-94528930 None:intergenic 60.0%
AGCAGCTTCCTAATGGGGGG+TGG - chr6_3:94529039-94529058 Msa0966340:intron 60.0%
GCAGCTTCCTAATGGGGGGT+GGG - chr6_3:94529040-94529059 Msa0966340:intron 60.0%
CAGCTTCCTAATGGGGGGTG+GGG - chr6_3:94529041-94529060 Msa0966340:intron 60.0%
CTTTCTCCCCACCCCCCATT+AGG + chr6_3:94529050-94529069 None:intergenic 60.0%
GTCCCTTATCGGTGCAGGGC+AGG - chr6_3:94529223-94529242 Msa0966340:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 94524573 94529909 94524573 ID=Msa0966340;Name=Msa0966340
chr6_3 mRNA 94524573 94529909 94524573 ID=Msa0966340-mRNA-1;Parent=Msa0966340;Name=Msa0966340-mRNA-1;_AED=0.10;_eAED=0.10;_QI=43|1|1|1|1|1|14|243|701
chr6_3 exon 94524573 94524947 94524573 ID=Msa0966340-mRNA-1:exon:17481;Parent=Msa0966340-mRNA-1
chr6_3 exon 94525048 94525131 94525048 ID=Msa0966340-mRNA-1:exon:17480;Parent=Msa0966340-mRNA-1
chr6_3 exon 94525238 94525318 94525238 ID=Msa0966340-mRNA-1:exon:17479;Parent=Msa0966340-mRNA-1
chr6_3 exon 94525391 94525568 94525391 ID=Msa0966340-mRNA-1:exon:17478;Parent=Msa0966340-mRNA-1
chr6_3 exon 94525707 94525850 94525707 ID=Msa0966340-mRNA-1:exon:17477;Parent=Msa0966340-mRNA-1
chr6_3 exon 94525964 94526010 94525964 ID=Msa0966340-mRNA-1:exon:17476;Parent=Msa0966340-mRNA-1
chr6_3 exon 94526114 94526269 94526114 ID=Msa0966340-mRNA-1:exon:17475;Parent=Msa0966340-mRNA-1
chr6_3 exon 94526372 94526614 94526372 ID=Msa0966340-mRNA-1:exon:17474;Parent=Msa0966340-mRNA-1
chr6_3 exon 94526966 94527268 94526966 ID=Msa0966340-mRNA-1:exon:17473;Parent=Msa0966340-mRNA-1
chr6_3 exon 94527394 94527560 94527394 ID=Msa0966340-mRNA-1:exon:17472;Parent=Msa0966340-mRNA-1
chr6_3 exon 94527658 94527742 94527658 ID=Msa0966340-mRNA-1:exon:17471;Parent=Msa0966340-mRNA-1
chr6_3 exon 94527836 94528033 94527836 ID=Msa0966340-mRNA-1:exon:17470;Parent=Msa0966340-mRNA-1
chr6_3 exon 94529389 94529478 94529389 ID=Msa0966340-mRNA-1:exon:17469;Parent=Msa0966340-mRNA-1
chr6_3 exon 94529669 94529909 94529669 ID=Msa0966340-mRNA-1:exon:17468;Parent=Msa0966340-mRNA-1
chr6_3 five_prime_UTR 94529867 94529909 94529867 ID=Msa0966340-mRNA-1:five_prime_utr;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94529669 94529866 94529669 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94529389 94529478 94529389 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94527836 94528033 94527836 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94527658 94527742 94527658 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94527394 94527560 94527394 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94526966 94527268 94526966 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94526372 94526614 94526372 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94526114 94526269 94526114 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94525964 94526010 94525964 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94525707 94525850 94525707 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94525391 94525568 94525391 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94525238 94525318 94525238 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94525048 94525131 94525048 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 CDS 94524816 94524947 94524816 ID=Msa0966340-mRNA-1:cds;Parent=Msa0966340-mRNA-1
chr6_3 three_prime_UTR 94524573 94524815 94524573 ID=Msa0966340-mRNA-1:three_prime_utr;Parent=Msa0966340-mRNA-1
Gene Sequence

>Msa0966340

ATGAACATGCAGCTAAAAAAAGAGAATCAATGTAGCCCCATTCCACCAGCAGTTAAACTGAGAGAAGAAGATATCATAACAGGGGAAGCATTGATTACAACAATAAGAAGGGCTACAAGTTTCTATTCCTCAATTCAAGCTCATGATGGCCACTGGCCTGCAGAATCTGCTGGCCCTTTGTTTTTTGTTCAACCATTGGTAATGGCCCTCTATGTTACAGGATCCCTTGATGAGGTTCTAGGACCTCAACATAAGAAGGAAATTGTTCGGTATTTATATAATCACCAGAACGAAGATGGTGGATGGGGATTCCATATAGAGGGTCATAGCACAATGTTTGGATCAGCATTGAGCTATATTGCACTGAGGCTGCTTGGAGAAGGACCTGAAGATGGTGAAGACAAGGCAATGGAGAGATGCAGAAATTGGATCCTTGACCATGGTGGTTTAGTGGCTATTCCATCATGGGGAAAGTTCTGGGTCACGGTACTTGGAGTTTATGAGTGGCGAGGCTGCAATCCACTTCCACCAGAATTCTGGTTTCTACCAAAATTCACCCCTATTCATCCAGGGAAAATGTTGTGCTACTGTCGGTTAGTTTACATGCCCATGTCATATCTATATGGGAAGAAGTTTGTGGGCCCTATCACTGACCTAATCAAATCACTGAGAGAAGAACTGTACAATCAACCTTATGATCAAATCAACTGGAACAAAGCCCGGAATACTATTGCTAAGGAGGATCTGTACTACCCACATCCTATGATTCAAGATATGTTATGGGGATTTCTTTATCATGTGGGAGAGCCTTTTCTGAATTGCTGGCCTTTCACCAAGCTTAGACAGAAGGCATTAGAAATTGCAATTAATCATGTGCGTTACGAGGATGAGAACAGTAGATACCTTTGCATTGGAAGTGTAGAGAAGGTATTATGTTTGATAGCGCGTTGGGTTGAAGACCCGAACTCAGAGGCATACAAACTTCATTTAGCCCGAATCCCTGATTACTTCTGGCTTGCAGAAGATGGCTTGAAAATCCAGAGCTTTGGGTGTCAAATGTGGGATGCAGCATTTGCTATACAAGCAATACTTGCTTGTAACGTGAGTGAAGAGTATGGTCCTACACTTCGGAAAGCACATGACTTCCTGAAGGCCTCACAGGTAGTTGAAAATCCATCCGGTGAGTTCAAAGCAATGTACAGACACATATGCAAAGGATCGTGGACATTCTCAATGCATGACCAAGGTTGGCAAGTCTCTGACTGCACCGCAGAAGGACTCAAGGCCGCACTCCTGTTGTCAAAAATGCCAACTGATCTTGTTGGAGAAAAATTGGAAACAGAGCGACTCTACGATGCTGTTAATGTCATCCTCTCGCTACAGAGCAGTAATGGCGGGTTCCCTGCTTGGGAGCCTCAAAATTCTTACAGTTGGTTAGAGAAATTCAATCCAACTGAATTCTTTGAAGACACACTGATTGAGAGGGAGTATGTTGAGTGCACTGGTTCTGCAATGCAAGCCCTGTATCTCTTCACAAAGCTACACCCAACTCATAGAGCTAAGGAAATACATCACTGCCTTTCCAAAGCAATTCATTTCATTGAAAACACACAAAACCCTGATGGATCCTGGTACGGCTGTTGGGGAATTTGCTATACGTATGGCACTTGGTTTGCTGTAGAGGGACTAACAGCTTGTGGAAAGAATTACCGTAACAGTCCTTCCTTGCAAAAAGCTTGTCAATTTTTATTGTCAAAGCAGCTTCCTAATGGGGGGTGGGGAGAAAGTTATTTGTCAAGCCAAAACAAGGTATATACAAACCTAGAAGACAACCGTGCAAATTTAGTTCAAACTTCGTGGGCTTTGTTGTCCCTTATCGGTGCAGGGCAGGCTGATATAGATCCTACACCCATACACCGTGGAATGAAGTTAATAATCAATTCACAGATGGAAGATGGAGATTTCCCACAACAGGAGATAACAGGAGTATTTATGAGGAATTGTACCCTGAACTACTCATCATATCGAAACATCTTTCCCATATGGGCTCTGGGAGAGTATCGTCACCGAGTCTTGTCTGCACAAATTCCAAATGCTGCACCTTGA
Protein sequence

>Msa0966340

MNMQLKKENQCSPIPPAVKLREEDIITGEALITTIRRATSFYSSIQAHDGHWPAESAGPLFFVQPLVMALYVTGSLDEVLGPQHKKEIVRYLYNHQNEDGGWGFHIEGHSTMFGSALSYIALRLLGEGPEDGEDKAMERCRNWILDHGGLVAIPSWGKFWVTVLGVYEWRGCNPLPPEFWFLPKFTPIHPGKMLCYCRLVYMPMSYLYGKKFVGPITDLIKSLREELYNQPYDQINWNKARNTIAKEDLYYPHPMIQDMLWGFLYHVGEPFLNCWPFTKLRQKALEIAINHVRYEDENSRYLCIGSVEKVLCLIARWVEDPNSEAYKLHLARIPDYFWLAEDGLKIQSFGCQMWDAAFAIQAILACNVSEEYGPTLRKAHDFLKASQVVENPSGEFKAMYRHICKGSWTFSMHDQGWQVSDCTAEGLKAALLLSKMPTDLVGEKLETERLYDAVNVILSLQSSNGGFPAWEPQNSYSWLEKFNPTEFFEDTLIEREYVECTGSAMQALYLFTKLHPTHRAKEIHHCLSKAIHFIENTQNPDGSWYGCWGICYTYGTWFAVEGLTACGKNYRNSPSLQKACQFLLSKQLPNGGWGESYLSSQNKVYTNLEDNRANLVQTSWALLSLIGAGQADIDPTPIHRGMKLIINSQMEDGDFPQQEITGVFMRNCTLNYSSYRNIFPIWALGEYRHRVLSAQIPNAAP*