AlfalfaGEDB | Msa1437190

M. sativa cultivar zhongmu-4 / Msa1437190

KEGG: -
GO: -
PFAM: PF04819.15

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437190	XP_013470277.1	92.230	296	23	0	1	296	1	296	0.0	569

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437190	A0A072W228	92.230	296	23	0	1	296	1	296	0.0	569

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0036960	Msa1437190	0.813929	1.995470e-51	-8.615850e-47
Msa0044100	Msa1437190	0.978744	1.799204e-146	-8.615850e-47
Msa0095540	Msa1437190	0.828988	6.617281e-55	-8.615850e-47
Msa0141100	Msa1437190	0.858806	6.396546e-63	-8.615850e-47
Msa0164660	Msa1437190	0.818221	2.195355e-52	-8.615850e-47
Msa0165430	Msa1437190	0.809206	2.121446e-50	-8.615850e-47
Msa0183750	Msa1437190	0.976482	6.565454e-142	-8.615850e-47
Msa0185380	Msa1437190	0.812281	4.588396e-51	-8.615850e-47
Msa0185480	Msa1437190	0.813543	2.427455e-51	-8.615850e-47
Msa0185640	Msa1437190	-0.822416	2.396219e-53	-8.615850e-47

Showing 1 to 10 of 107 entries

Previous1 2 3 4 5…11Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437190	MtrunA17_Chr1g0210721	92.230	296	23	0	1	296	1	296	0.0	569
Msa1437190	MtrunA17_Chr1g0210731	66.234	308	90	5	4	300	1	305	3.11e-138	392
Msa1437190	MtrunA17_Chr2g0287431	45.608	296	149	3	1	288	1	292	6.91e-82	250
Msa1437190	MtrunA17_Chr4g0033971	29.183	257	159	6	6	248	6	253	1.61e-29	114
Msa1437190	MtrunA17_Chr5g0409571	26.545	275	185	6	1	266	1	267	2.31e-21	91.3
Msa1437190	MtrunA17_Chr8g0369411	25.940	266	178	7	6	261	6	262	3.39e-19	85.1

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1437190	AT1G55230.1	47.987	298	137	7	1	287	1	291	1.25e-91	274
Msa1437190	AT1G55240.1	45.517	290	147	4	6	287	6	292	2.25e-85	259
Msa1437190	AT5G19870.1	42.857	280	148	2	1	272	1	276	5.34e-79	241
Msa1437190	AT1G49470.1	28.904	301	184	8	6	287	6	295	7.07e-26	104
Msa1437190	AT1G32127.2	28.571	245	158	5	1	236	1	237	3.64e-20	88.2
Msa1437190	AT1G32127.1	28.571	245	158	5	1	236	1	237	3.64e-20	88.2

Showing 1 to 6 of 6 entries

Previous1Next

Find 59 sgRNAs with CRISPR-Local

Find 136 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAACAAAGTGGAGTTTG+AGG	0.514586	tig0028188:-7194	Msa1437190:intergenic
AAGGAGATCAACTTATGGTT+AGG	0.470541	tig0028188:+7754	Msa1437190:CDS
AAGGAGGAACAGTACGGTGA+AGG	0.576386	tig0028188:+7927	Msa1437190:CDS
ACTTGGTGGATATGGTTGGT+AGG	0.580887	tig0028188:-7348	Msa1437190:intergenic
AGAAGCTTCGAAGATTTCTG+CGG	0.668279	tig0028188:-7310	Msa1437190:intergenic
AGAAGTCACATGGGGATAGA+AGG	0.425426	tig0028188:+7534	Msa1437190:CDS
AGGCACTATGATTGCATTGG+AGG	0.487729	tig0028188:+7113	None:intergenic
AGGTTTGTTCATTATGTTCA+TGG	0.326708	tig0028188:+7677	Msa1437190:CDS
AGTGTCTTTCTACTTGATTA+TGG	0.354291	tig0028188:+7863	Msa1437190:CDS
ATATCTGGTTATCAACCCAA+AGG	0.602519	tig0028188:+7714	Msa1437190:CDS

Showing 1 to 10 of 59 entries

Previous1 2 3 4 5 6Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
TATGAAGAAAGACACAGTAA+TGG	-	tig0028188:7385-7404	Msa1437190:intergenic	30.0%
TCTATCAAGAATTATGGCAA+AGG	-	tig0028188:7415-7434	Msa1437190:intergenic	30.0%
TGAACATAATGAACAAACCT+TGG	-	tig0028188:7677-7696	Msa1437190:intergenic	30.0%
ATATGAAGGAGATCAACTTA+TGG	+	tig0028188:7749-7768	Msa1437190:CDS	30.0%
AGTGTCTTTCTACTTGATTA+TGG	+	tig0028188:7863-7882	Msa1437190:CDS	30.0%
TATGAAGAAAGACACAGTAA+TGG	-	tig0028188:7385-7404	Msa1437190:intergenic	30.0%
TCTATCAAGAATTATGGCAA+AGG	-	tig0028188:7415-7434	Msa1437190:intergenic	30.0%
TGAACATAATGAACAAACCT+TGG	-	tig0028188:7677-7696	Msa1437190:intergenic	30.0%
ATATGAAGGAGATCAACTTA+TGG	+	tig0028188:7749-7768	Msa1437190:CDS	30.0%
AGTGTCTTTCTACTTGATTA+TGG	+	tig0028188:7863-7882	Msa1437190:CDS	30.0%

Showing 1 to 10 of 136 entries

Previous1 2 3 4 5…14Next

Chromosome	Type	Strat	End	Strand	Name
tig0028188	gene	7120	8022	7120	ID=Msa1437190;Name=Msa1437190
tig0028188	mRNA	7120	8022	7120	ID=Msa1437190-mRNA-1;Parent=Msa1437190;Name=Msa1437190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0\|-1\|0\|1\|-1\|1\|1\|0\|300
tig0028188	exon	7120	8022	7120	ID=Msa1437190-mRNA-1:exon:10517;Parent=Msa1437190-mRNA-1
tig0028188	CDS	7120	8022	7120	ID=Msa1437190-mRNA-1:cds;Parent=Msa1437190-mRNA-1

Gene Sequence

>Msa1437190

ATGATTGCATTGGAGGGACATATATGCATGGGGTTTGTTTTCTTTGTACTTGGTTTCTGGCACCTCTTCAACTACCTCAAACTCCACTTTGTTTGTTCTTCCAACACTTCATTACCCTTTTGGTTTCCCACCAAAATAAGTAGATACTTAGAGCTTTATTTCATTGTGGCCAGTTGCGCAATCTTCTCAGCCGCAGAAATCTTCGAAGCTTCTAGTAATGGAACCATTCCTACCAACCATATCCACCAAGTTGAACACACTTCCATTACTGTGTCTTTCTTCATATATGCTACCTTTGCCATAATTCTTGATAGAAACAAATCAACTGTTACTAAAAAAACTCAATATGAAATTACTCTTTTGCTTGCAGCTATAGCATTTGGACAAGAATTTCTTCTCTTCCATCTTCATTCAAGAAGTCACATGGGGATAGAAGGACAATATCATTATTGTTTGCAAGTTTTGATTCTGATAGGTTTTGTTACAACCCTTATGGGAATTGGTTTTCCAATGAGTTTTTTGGTATGTTTTGTTCGTTCTGTTAGCATGATCTTCCAAGGTTTGTTCATTATGTTCATGGGTTTAGTGCTTTCTATATCTGGTTATCAACCCAAAGGTTGCTTCTTGGAATATGAAGGAGATCAACTTATGGTTAGGTGCAATGATGAAAAGGCTATGCATCGTGCTGTTTCATTGGTGAATCTTCAATTCAGCTGGTTCTTTATTGGAGTCACTGTTTTTGCAGTGTCTTTCTACTTGATTATGGCTATAATTTATGGTGAAAAAGTGGAGTGCGATTCACTGATGAAGGAGGAACAGTACGGTGAAGGCGATGGCTCAAAAAATTTCGATGTTGAGTCACATATCCAGATGATTTCTACTAGAATGGAAGAGAAAATTTGA

Protein sequence

>Msa1437190

MIALEGHICMGFVFFVLGFWHLFNYLKLHFVCSSNTSLPFWFPTKISRYLELYFIVASCAIFSAAEIFEASSNGTIPTNHIHQVEHTSITVSFFIYATFAIILDRNKSTVTKKTQYEITLLLAAIAFGQEFLLFHLHSRSHMGIEGQYHYCLQVLILIGFVTTLMGIGFPMSFLVCFVRSVSMIFQGLFIMFMGLVLSISGYQPKGCFLEYEGDQLMVRCNDEKAMHRAVSLVNLQFSWFFIGVTVFAVSFYLIMAIIYGEKVECDSLMKEEQYGEGDGSKNFDVESHIQMISTRMEEKI*