Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437190 | XP_013470277.1 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437190 | A0A072W228 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036960 | Msa1437190 | 0.813929 | 1.995470e-51 | -8.615850e-47 |
| Msa0044100 | Msa1437190 | 0.978744 | 1.799204e-146 | -8.615850e-47 |
| Msa0095540 | Msa1437190 | 0.828988 | 6.617281e-55 | -8.615850e-47 |
| Msa1369700 | Msa1437190 | 0.944383 | 2.158130e-103 | -8.615850e-47 |
| Msa1381140 | Msa1437190 | 0.814343 | 1.617136e-51 | -8.615850e-47 |
| Msa1395870 | Msa1437190 | 0.812080 | 5.076441e-51 | -8.615850e-47 |
| Msa1397250 | Msa1437190 | 0.809822 | 1.565132e-50 | -8.615850e-47 |
| Msa1399560 | Msa1437190 | 0.857914 | 1.179172e-62 | -8.615850e-47 |
| Msa1423450 | Msa1437190 | 0.819375 | 1.200223e-52 | -8.615850e-47 |
| Msa1437190 | Msa1443840 | 0.863046 | 3.292706e-64 | -8.615850e-47 |
| Msa1437190 | Msa1452060 | 0.856067 | 4.132367e-62 | -8.615850e-47 |
| Msa1437190 | Msa1460380 | 0.962646 | 3.986315e-121 | -8.615850e-47 |
| Msa1437190 | Msa1460890 | 0.819119 | 1.372940e-52 | -8.615850e-47 |
| Msa0611380 | Msa1437190 | 0.884957 | 1.230152e-71 | -8.615850e-47 |
| Msa0618180 | Msa1437190 | 0.855388 | 6.521940e-62 | -8.615850e-47 |
| Msa0618220 | Msa1437190 | 0.833376 | 5.527757e-56 | -8.615850e-47 |
| Msa0618290 | Msa1437190 | 0.800914 | 1.152301e-48 | -8.615850e-47 |
| Msa0619990 | Msa1437190 | 0.804335 | 2.269319e-49 | -8.615850e-47 |
| Msa0621890 | Msa1437190 | 0.802887 | 4.532470e-49 | -8.615850e-47 |
| Msa0628640 | Msa1437190 | 0.879439 | 1.244762e-69 | -8.615850e-47 |
| Msa0631120 | Msa1437190 | 0.856783 | 2.547922e-62 | -8.615850e-47 |
| Msa0653020 | Msa1437190 | 0.834512 | 2.872208e-56 | -8.615850e-47 |
| Msa0666030 | Msa1437190 | 0.879196 | 1.517693e-69 | -8.615850e-47 |
| Msa0669340 | Msa1437190 | 0.860292 | 2.287351e-63 | -8.615850e-47 |
| Msa0701770 | Msa1437190 | 0.824692 | 7.032176e-54 | -8.615850e-47 |
| Msa0701970 | Msa1437190 | 0.852291 | 5.082043e-61 | -8.615850e-47 |
| Msa0716450 | Msa1437190 | 0.883573 | 4.001456e-71 | -8.615850e-47 |
| Msa0717260 | Msa1437190 | 0.860590 | 1.858040e-63 | -8.615850e-47 |
| Msa0734230 | Msa1437190 | 0.808377 | 3.192008e-50 | -8.615850e-47 |
| Msa0749550 | Msa1437190 | 0.801329 | 9.479038e-49 | -8.615850e-47 |
| Msa0758320 | Msa1437190 | 0.848585 | 5.581528e-60 | -8.615850e-47 |
| Msa0773610 | Msa1437190 | 0.821421 | 4.075032e-53 | -8.615850e-47 |
| Msa0775440 | Msa1437190 | 0.822352 | 2.480392e-53 | -8.615850e-47 |
| Msa0799030 | Msa1437190 | 0.874087 | 8.879903e-68 | -8.615850e-47 |
| Msa0799700 | Msa1437190 | 0.815248 | 1.019055e-51 | -8.615850e-47 |
| Msa0812820 | Msa1437190 | 0.838642 | 2.547374e-57 | -8.615850e-47 |
| Msa0837440 | Msa1437190 | 0.840827 | 6.878767e-58 | -8.615850e-47 |
| Msa0837980 | Msa1437190 | 0.854454 | 1.218221e-61 | -8.615850e-47 |
| Msa0141100 | Msa1437190 | 0.858806 | 6.396546e-63 | -8.615850e-47 |
| Msa0164660 | Msa1437190 | 0.818221 | 2.195355e-52 | -8.615850e-47 |
| Msa0165430 | Msa1437190 | 0.809206 | 2.121446e-50 | -8.615850e-47 |
| Msa0183750 | Msa1437190 | 0.976482 | 6.565454e-142 | -8.615850e-47 |
| Msa0185380 | Msa1437190 | 0.812281 | 4.588396e-51 | -8.615850e-47 |
| Msa0185480 | Msa1437190 | 0.813543 | 2.427455e-51 | -8.615850e-47 |
| Msa0185640 | Msa1437190 | -0.822416 | 2.396219e-53 | -8.615850e-47 |
| Msa0191040 | Msa1437190 | 0.837861 | 4.048983e-57 | -8.615850e-47 |
| Msa0220300 | Msa1437190 | 0.831683 | 1.452583e-55 | -8.615850e-47 |
| Msa0233340 | Msa1437190 | 0.837942 | 3.858174e-57 | -8.615850e-47 |
| Msa1227950 | Msa1437190 | 0.822904 | 1.845218e-53 | -8.615850e-47 |
| Msa1227970 | Msa1437190 | 0.825516 | 4.491951e-54 | -8.615850e-47 |
| Msa1228210 | Msa1437190 | 0.804717 | 1.889430e-49 | -8.615850e-47 |
| Msa1255280 | Msa1437190 | 0.823086 | 1.673508e-53 | -8.615850e-47 |
| Msa1256540 | Msa1437190 | -0.815560 | 8.682305e-52 | -8.615850e-47 |
| Msa1258050 | Msa1437190 | 0.817115 | 3.898979e-52 | -8.615850e-47 |
| Msa1266960 | Msa1437190 | 0.857724 | 1.343317e-62 | -8.615850e-47 |
| Msa1271280 | Msa1437190 | 0.803021 | 4.251484e-49 | -8.615850e-47 |
| Msa1296960 | Msa1437190 | -0.828420 | 9.082233e-55 | -8.615850e-47 |
| Msa1308130 | Msa1437190 | 0.828196 | 1.028104e-54 | -8.615850e-47 |
| Msa1321000 | Msa1437190 | 0.801514 | 8.688390e-49 | -8.615850e-47 |
| Msa1335770 | Msa1437190 | 0.807188 | 5.710630e-50 | -8.615850e-47 |
| Msa1339940 | Msa1437190 | 0.857907 | 1.184924e-62 | -8.615850e-47 |
| Msa1342430 | Msa1437190 | 0.807007 | 6.236210e-50 | -8.615850e-47 |
| Msa1343820 | Msa1437190 | 0.813303 | 2.739979e-51 | -8.615850e-47 |
| Msa0371540 | Msa1437190 | 0.812287 | 4.573841e-51 | -8.615850e-47 |
| Msa0374850 | Msa1437190 | 0.853896 | 1.764458e-61 | -8.615850e-47 |
| Msa0375090 | Msa1437190 | 0.851205 | 1.032808e-60 | -8.615850e-47 |
| Msa0385670 | Msa1437190 | 0.828173 | 1.041461e-54 | -8.615850e-47 |
| Msa0418000 | Msa1437190 | 0.822341 | 2.494436e-53 | -8.615850e-47 |
| Msa0435670 | Msa1437190 | 0.818687 | 1.721239e-52 | -8.615850e-47 |
| Msa0465680 | Msa1437190 | -0.803179 | 3.944050e-49 | -8.615850e-47 |
| Msa0466060 | Msa1437190 | 0.809378 | 1.949573e-50 | -8.615850e-47 |
| Msa0470340 | Msa1437190 | 0.848609 | 5.496897e-60 | -8.615850e-47 |
| Msa0470860 | Msa1437190 | 0.871065 | 9.076368e-67 | -8.615850e-47 |
| Msa0479680 | Msa1437190 | 0.814421 | 1.554134e-51 | -8.615850e-47 |
| Msa0479700 | Msa1437190 | 0.815010 | 1.150917e-51 | -8.615850e-47 |
| Msa0480950 | Msa1437190 | 0.832954 | 7.039860e-56 | -8.615850e-47 |
| Msa0981010 | Msa1437190 | 0.841126 | 5.739467e-58 | -8.615850e-47 |
| Msa1000020 | Msa1437190 | 0.818294 | 2.113281e-52 | -8.615850e-47 |
| Msa1001770 | Msa1437190 | 0.814352 | 1.609557e-51 | -8.615850e-47 |
| Msa1002620 | Msa1437190 | 0.862163 | 6.156287e-64 | -8.615850e-47 |
| Msa1098560 | Msa1437190 | 0.805995 | 1.019734e-49 | -8.615850e-47 |
| Msa0251240 | Msa1437190 | 0.824204 | 9.161947e-54 | -8.615850e-47 |
| Msa0288190 | Msa1437190 | 0.809914 | 1.494745e-50 | -8.615850e-47 |
| Msa0288200 | Msa1437190 | 0.801238 | 9.896349e-49 | -8.615850e-47 |
| Msa0311690 | Msa1437190 | 0.830928 | 2.227044e-55 | -8.615850e-47 |
| Msa0342340 | Msa1437190 | -0.815935 | 7.164505e-52 | -8.615850e-47 |
| Msa1113850 | Msa1437190 | 0.805818 | 1.111004e-49 | -8.615850e-47 |
| Msa1190120 | Msa1437190 | 0.853189 | 2.815723e-61 | -8.615850e-47 |
| Msa1203000 | Msa1437190 | 0.839814 | 1.265114e-57 | -8.615850e-47 |
| Msa1204980 | Msa1437190 | -0.806392 | 8.413317e-50 | -8.615850e-47 |
| Msa1205010 | Msa1437190 | -0.808940 | 2.418853e-50 | -8.615850e-47 |
| Msa1211550 | Msa1437190 | 0.852196 | 5.409390e-61 | -8.615850e-47 |
| Msa1217940 | Msa1437190 | 0.806729 | 7.142423e-50 | -8.615850e-47 |
| Msa1219260 | Msa1437190 | 0.851971 | 6.266668e-61 | -8.615850e-47 |
| Msa0517340 | Msa1437190 | 0.811426 | 7.042591e-51 | -8.615850e-47 |
| Msa0531430 | Msa1437190 | 0.893618 | 5.315292e-75 | -8.615850e-47 |
| Msa0534570 | Msa1437190 | 0.834476 | 2.932550e-56 | -8.615850e-47 |
| Msa0534590 | Msa1437190 | 0.858023 | 1.094702e-62 | -8.615850e-47 |
| Msa0557680 | Msa1437190 | 0.824203 | 9.164050e-54 | -8.615850e-47 |
| Msa0565600 | Msa1437190 | 0.880432 | 5.515222e-70 | -8.615850e-47 |
| Msa0590800 | Msa1437190 | 0.839787 | 1.286004e-57 | -8.615850e-47 |
| Msa0845590 | Msa1437190 | -0.809686 | 1.673377e-50 | -8.615850e-47 |
| Msa0853320 | Msa1437190 | 0.836639 | 8.316761e-57 | -8.615850e-47 |
| Msa0944770 | Msa1437190 | 0.814574 | 1.437252e-51 | -8.615850e-47 |
| Msa0965520 | Msa1437190 | 0.806022 | 1.006229e-49 | -8.615850e-47 |
| Msa0966340 | Msa1437190 | 0.804345 | 2.258546e-49 | -8.615850e-47 |
| Msa0966440 | Msa1437190 | 0.805199 | 1.498019e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437190 | MtrunA17_Chr1g0210721 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Msa1437190 | MtrunA17_Chr1g0210731 | 66.234 | 308 | 90 | 5 | 4 | 300 | 1 | 305 | 3.11e-138 | 392 |
| Msa1437190 | MtrunA17_Chr2g0287431 | 45.608 | 296 | 149 | 3 | 1 | 288 | 1 | 292 | 6.91e-82 | 250 |
| Msa1437190 | MtrunA17_Chr4g0033971 | 29.183 | 257 | 159 | 6 | 6 | 248 | 6 | 253 | 1.61e-29 | 114 |
| Msa1437190 | MtrunA17_Chr5g0409571 | 26.545 | 275 | 185 | 6 | 1 | 266 | 1 | 267 | 2.31e-21 | 91.3 |
| Msa1437190 | MtrunA17_Chr8g0369411 | 25.940 | 266 | 178 | 7 | 6 | 261 | 6 | 262 | 3.39e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1437190 | AT1G55230.1 | 47.987 | 298 | 137 | 7 | 1 | 287 | 1 | 291 | 1.25e-91 | 274 |
| Msa1437190 | AT1G55240.1 | 45.517 | 290 | 147 | 4 | 6 | 287 | 6 | 292 | 2.25e-85 | 259 |
| Msa1437190 | AT5G19870.1 | 42.857 | 280 | 148 | 2 | 1 | 272 | 1 | 276 | 5.34e-79 | 241 |
| Msa1437190 | AT1G49470.1 | 28.904 | 301 | 184 | 8 | 6 | 287 | 6 | 295 | 7.07e-26 | 104 |
| Msa1437190 | AT1G32127.2 | 28.571 | 245 | 158 | 5 | 1 | 236 | 1 | 237 | 3.64e-20 | 88.2 |
| Msa1437190 | AT1G32127.1 | 28.571 | 245 | 158 | 5 | 1 | 236 | 1 | 237 | 3.64e-20 | 88.2 |
Find 59 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTATGGCTATAATTTA+TGG | 0.111898 | tig0028188:+7876 | Msa1437190:CDS |
| CTCTAAGTATCTACTTATTT+TGG | 0.153608 | tig0028188:-7250 | Msa1437190:intergenic |
| CCAACACTTCATTACCCTTT+TGG | 0.220978 | tig0028188:+7220 | Msa1437190:CDS |
| CAATTCAGCTGGTTCTTTAT+TGG | 0.239215 | tig0028188:+7825 | Msa1437190:CDS |
| GGTTTAGTGCTTTCTATATC+TGG | 0.242800 | tig0028188:+7699 | Msa1437190:CDS |
| TCAACCCAAAGGTTGCTTCT+TGG | 0.301483 | tig0028188:+7725 | Msa1437190:CDS |
| GGCTGAGAAGATTGCGCAAC+TGG | 0.317645 | tig0028188:-7289 | Msa1437190:intergenic |
| AGGTTTGTTCATTATGTTCA+TGG | 0.326708 | tig0028188:+7677 | Msa1437190:CDS |
| TGTGTTCAACTTGGTGGATA+TGG | 0.336618 | tig0028188:-7356 | Msa1437190:intergenic |
| GTTACAACCCTTATGGGAAT+TGG | 0.339254 | tig0028188:+7600 | Msa1437190:CDS |
| AGTGTCTTTCTACTTGATTA+TGG | 0.354291 | tig0028188:+7863 | Msa1437190:CDS |
| TTGCTTGCAGCTATAGCATT+TGG | 0.358644 | tig0028188:+7480 | Msa1437190:CDS |
| TTTGTTTCTATCAAGAATTA+TGG | 0.364986 | tig0028188:-7418 | Msa1437190:intergenic |
| ATATTCCAAGAAGCAACCTT+TGG | 0.390404 | tig0028188:-7730 | Msa1437190:intergenic |
| TGGAAAACCAATTCCCATAA+GGG | 0.397131 | tig0028188:-7607 | Msa1437190:intergenic |
| TTGGAAAACCAATTCCCATA+AGG | 0.421443 | tig0028188:-7608 | Msa1437190:intergenic |
| AGAAGTCACATGGGGATAGA+AGG | 0.425426 | tig0028188:+7534 | Msa1437190:CDS |
| CCAGATGATTTCTACTAGAA+TGG | 0.432826 | tig0028188:+7986 | Msa1437190:CDS |
| TGGTGAATCTTCAATTCAGC+TGG | 0.442803 | tig0028188:+7814 | Msa1437190:CDS |
| GTGGATATGGTTGGTAGGAA+TGG | 0.447015 | tig0028188:-7343 | Msa1437190:intergenic |
| CCATTCTAGTAGAAATCATC+TGG | 0.450188 | tig0028188:-7986 | Msa1437190:intergenic |
| GGTTTGTTCATTATGTTCAT+GGG | 0.458171 | tig0028188:+7678 | Msa1437190:CDS |
| TATTCCAAGAAGCAACCTTT+GGG | 0.461299 | tig0028188:-7729 | Msa1437190:intergenic |
| TATGCATCGTGCTGTTTCAT+TGG | 0.468772 | tig0028188:+7794 | Msa1437190:CDS |
| AAGGAGATCAACTTATGGTT+AGG | 0.470541 | tig0028188:+7754 | Msa1437190:CDS |
| GGTTAGGTGCAATGATGAAA+AGG | 0.480561 | tig0028188:+7770 | Msa1437190:CDS |
| AGGCACTATGATTGCATTGG+AGG | 0.487729 | tig0028188:+7113 | None:intergenic |
| GGTTGCTTCTTGGAATATGA+AGG | 0.488311 | tig0028188:+7735 | Msa1437190:CDS |
| GGAGTTTGAGGTAGTTGAAG+AGG | 0.502910 | tig0028188:-7182 | Msa1437190:intergenic |
| ATATGAAGGAGATCAACTTA+TGG | 0.508152 | tig0028188:+7749 | Msa1437190:CDS |
| AACAAACAAAGTGGAGTTTG+AGG | 0.514586 | tig0028188:-7194 | Msa1437190:intergenic |
| TGAACATAATGAACAAACCT+TGG | 0.523714 | tig0028188:-7674 | Msa1437190:intergenic |
| TGTGACTTCTTGAATGAAGA+TGG | 0.525692 | tig0028188:-7521 | Msa1437190:intergenic |
| ATCTTCGAAGCTTCTAGTAA+TGG | 0.527933 | tig0028188:+7318 | Msa1437190:CDS |
| CCAAAAGGGTAATGAAGTGT+TGG | 0.529229 | tig0028188:-7220 | Msa1437190:intergenic |
| TGGAAGTGTGTTCAACTTGG+TGG | 0.532303 | tig0028188:-7362 | Msa1437190:intergenic |
| TCTGTTAGCATGATCTTCCA+AGG | 0.532759 | tig0028188:+7657 | Msa1437190:CDS |
| GGAGTGCGATTCACTGATGA+AGG | 0.536386 | tig0028188:+7908 | Msa1437190:CDS |
| TCTAGGCACTATGATTGCAT+TGG | 0.541099 | tig0028188:+7110 | None:intergenic |
| TTGGAGGGACATATATGCAT+GGG | 0.547892 | tig0028188:+7129 | Msa1437190:CDS |
| GGCACTATGATTGCATTGGA+GGG | 0.559391 | tig0028188:+7114 | None:intergenic |
| CTTAGAGCTTTATTTCATTG+TGG | 0.561652 | tig0028188:+7266 | Msa1437190:CDS |
| TTCAACTTGGTGGATATGGT+TGG | 0.563681 | tig0028188:-7352 | Msa1437190:intergenic |
| TATGAAGAAAGACACAGTAA+TGG | 0.570471 | tig0028188:-7382 | Msa1437190:intergenic |
| AAGGAGGAACAGTACGGTGA+AGG | 0.576386 | tig0028188:+7927 | Msa1437190:CDS |
| ACTTGGTGGATATGGTTGGT+AGG | 0.580887 | tig0028188:-7348 | Msa1437190:intergenic |
| TCTATCAAGAATTATGGCAA+AGG | 0.582723 | tig0028188:-7412 | Msa1437190:intergenic |
| GAACAGTACGGTGAAGGCGA+TGG | 0.598192 | tig0028188:+7933 | Msa1437190:CDS |
| ATATCTGGTTATCAACCCAA+AGG | 0.602519 | tig0028188:+7714 | Msa1437190:CDS |
| TCTTCATTCAAGAAGTCACA+TGG | 0.616300 | tig0028188:+7524 | Msa1437190:CDS |
| ATTGGAGGGACATATATGCA+TGG | 0.620076 | tig0028188:+7128 | Msa1437190:CDS |
| TAATGGAAGTGTGTTCAACT+TGG | 0.624797 | tig0028188:-7365 | Msa1437190:intergenic |
| TGTTGGAAGAACAAACAAAG+TGG | 0.643408 | tig0028188:-7203 | Msa1437190:intergenic |
| CTTCATTCAAGAAGTCACAT+GGG | 0.655694 | tig0028188:+7525 | Msa1437190:CDS |
| TGGAGGGACATATATGCATG+GGG | 0.665069 | tig0028188:+7130 | Msa1437190:CDS |
| GTGCGATTCACTGATGAAGG+AGG | 0.666959 | tig0028188:+7911 | Msa1437190:CDS |
| AGAAGCTTCGAAGATTTCTG+CGG | 0.668279 | tig0028188:-7310 | Msa1437190:intergenic |
| CTGATGAAGGAGGAACAGTA+CGG | 0.675878 | tig0028188:+7921 | Msa1437190:CDS |
| TTCATTCAAGAAGTCACATG+GGG | 0.680400 | tig0028188:+7526 | Msa1437190:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTCTATCAAGAATTA+TGG | - | tig0028188:7421-7440 | Msa1437190:intergenic | 20.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | + | tig0028188:7876-7895 | Msa1437190:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | + | tig0028188:7887-7906 | Msa1437190:CDS | 20.0% |
| !!! | TTTGTTTCTATCAAGAATTA+TGG | - | tig0028188:7421-7440 | Msa1437190:intergenic | 20.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | + | tig0028188:7876-7895 | Msa1437190:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | + | tig0028188:7887-7906 | Msa1437190:CDS | 20.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | - | tig0028188:7249-7268 | Msa1437190:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | - | tig0028188:7250-7269 | Msa1437190:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | - | tig0028188:7253-7272 | Msa1437190:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCAT+TGG | - | tig0028188:7630-7649 | Msa1437190:intergenic | 25.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | - | tig0028188:7249-7268 | Msa1437190:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | - | tig0028188:7250-7269 | Msa1437190:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | - | tig0028188:7253-7272 | Msa1437190:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCAT+TGG | - | tig0028188:7630-7649 | Msa1437190:intergenic | 25.0% |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | + | tig0028188:7157-7176 | Msa1437190:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | + | tig0028188:7266-7285 | Msa1437190:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | - | tig0028188:7385-7404 | Msa1437190:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | - | tig0028188:7415-7434 | Msa1437190:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | + | tig0028188:7573-7592 | Msa1437190:CDS | 30.0% |
| ! | TGGTTTTCCAATGAGTTTTT+TGG | + | tig0028188:7620-7639 | Msa1437190:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | - | tig0028188:7677-7696 | Msa1437190:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | + | tig0028188:7677-7696 | Msa1437190:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | + | tig0028188:7678-7697 | Msa1437190:CDS | 30.0% |
| ATATGAAGGAGATCAACTTA+TGG | + | tig0028188:7749-7768 | Msa1437190:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | + | tig0028188:7863-7882 | Msa1437190:CDS | 30.0% | |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | + | tig0028188:7157-7176 | Msa1437190:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | + | tig0028188:7266-7285 | Msa1437190:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | - | tig0028188:7385-7404 | Msa1437190:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | - | tig0028188:7415-7434 | Msa1437190:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | + | tig0028188:7573-7592 | Msa1437190:CDS | 30.0% |
| ! | TGGTTTTCCAATGAGTTTTT+TGG | + | tig0028188:7620-7639 | Msa1437190:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | - | tig0028188:7677-7696 | Msa1437190:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | + | tig0028188:7677-7696 | Msa1437190:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | + | tig0028188:7678-7697 | Msa1437190:CDS | 30.0% |
| ATATGAAGGAGATCAACTTA+TGG | + | tig0028188:7749-7768 | Msa1437190:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | + | tig0028188:7863-7882 | Msa1437190:CDS | 30.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | + | tig0028188:7150-7169 | Msa1437190:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | - | tig0028188:7197-7216 | Msa1437190:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | - | tig0028188:7206-7225 | Msa1437190:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | - | tig0028188:7237-7256 | Msa1437190:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | - | tig0028188:7238-7257 | Msa1437190:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | + | tig0028188:7318-7337 | Msa1437190:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | - | tig0028188:7368-7387 | Msa1437190:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | - | tig0028188:7524-7543 | Msa1437190:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | + | tig0028188:7524-7543 | Msa1437190:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | + | tig0028188:7525-7544 | Msa1437190:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | + | tig0028188:7526-7545 | Msa1437190:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | + | tig0028188:7593-7612 | Msa1437190:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | + | tig0028188:7594-7613 | Msa1437190:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | - | tig0028188:7610-7629 | Msa1437190:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | - | tig0028188:7611-7630 | Msa1437190:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | + | tig0028188:7699-7718 | Msa1437190:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | + | tig0028188:7714-7733 | Msa1437190:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | - | tig0028188:7732-7751 | Msa1437190:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | - | tig0028188:7733-7752 | Msa1437190:intergenic | 35.0% | |
| AAGGAGATCAACTTATGGTT+AGG | + | tig0028188:7754-7773 | Msa1437190:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | + | tig0028188:7825-7844 | Msa1437190:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | - | tig0028188:7989-8008 | Msa1437190:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | + | tig0028188:7986-8005 | Msa1437190:CDS | 35.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | + | tig0028188:7150-7169 | Msa1437190:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | - | tig0028188:7197-7216 | Msa1437190:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | - | tig0028188:7206-7225 | Msa1437190:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | - | tig0028188:7237-7256 | Msa1437190:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | - | tig0028188:7238-7257 | Msa1437190:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | + | tig0028188:7318-7337 | Msa1437190:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | - | tig0028188:7368-7387 | Msa1437190:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | - | tig0028188:7524-7543 | Msa1437190:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | + | tig0028188:7524-7543 | Msa1437190:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | + | tig0028188:7525-7544 | Msa1437190:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | + | tig0028188:7526-7545 | Msa1437190:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | + | tig0028188:7593-7612 | Msa1437190:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | + | tig0028188:7594-7613 | Msa1437190:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | - | tig0028188:7610-7629 | Msa1437190:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | - | tig0028188:7611-7630 | Msa1437190:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | + | tig0028188:7699-7718 | Msa1437190:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | + | tig0028188:7714-7733 | Msa1437190:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | - | tig0028188:7732-7751 | Msa1437190:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | - | tig0028188:7733-7752 | Msa1437190:intergenic | 35.0% | |
| AAGGAGATCAACTTATGGTT+AGG | + | tig0028188:7754-7773 | Msa1437190:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | + | tig0028188:7825-7844 | Msa1437190:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | - | tig0028188:7989-8008 | Msa1437190:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | + | tig0028188:7986-8005 | Msa1437190:CDS | 35.0% | |
| ATTGGAGGGACATATATGCA+TGG | + | tig0028188:7128-7147 | Msa1437190:CDS | 40.0% | |
| TTGGAGGGACATATATGCAT+GGG | + | tig0028188:7129-7148 | Msa1437190:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | - | tig0028188:7223-7242 | Msa1437190:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | + | tig0028188:7220-7239 | Msa1437190:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | - | tig0028188:7313-7332 | Msa1437190:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | - | tig0028188:7355-7374 | Msa1437190:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | - | tig0028188:7359-7378 | Msa1437190:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | + | tig0028188:7480-7499 | Msa1437190:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | + | tig0028188:7600-7619 | Msa1437190:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | + | tig0028188:7657-7676 | Msa1437190:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | + | tig0028188:7735-7754 | Msa1437190:CDS | 40.0% | |
| GGTTAGGTGCAATGATGAAA+AGG | + | tig0028188:7770-7789 | Msa1437190:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | + | tig0028188:7794-7813 | Msa1437190:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | tig0028188:7814-7833 | Msa1437190:CDS | 40.0% | |
| ATTGGAGGGACATATATGCA+TGG | + | tig0028188:7128-7147 | Msa1437190:CDS | 40.0% | |
| TTGGAGGGACATATATGCAT+GGG | + | tig0028188:7129-7148 | Msa1437190:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | - | tig0028188:7223-7242 | Msa1437190:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | + | tig0028188:7220-7239 | Msa1437190:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | - | tig0028188:7313-7332 | Msa1437190:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | - | tig0028188:7355-7374 | Msa1437190:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | - | tig0028188:7359-7378 | Msa1437190:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | + | tig0028188:7480-7499 | Msa1437190:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | + | tig0028188:7600-7619 | Msa1437190:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | + | tig0028188:7657-7676 | Msa1437190:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | + | tig0028188:7735-7754 | Msa1437190:CDS | 40.0% | |
| GGTTAGGTGCAATGATGAAA+AGG | + | tig0028188:7770-7789 | Msa1437190:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | + | tig0028188:7794-7813 | Msa1437190:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | + | tig0028188:7814-7833 | Msa1437190:CDS | 40.0% | |
| TGGAGGGACATATATGCATG+GGG | + | tig0028188:7130-7149 | Msa1437190:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | - | tig0028188:7185-7204 | Msa1437190:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | - | tig0028188:7346-7365 | Msa1437190:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | - | tig0028188:7351-7370 | Msa1437190:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | - | tig0028188:7365-7384 | Msa1437190:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | + | tig0028188:7534-7553 | Msa1437190:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | + | tig0028188:7725-7744 | Msa1437190:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | + | tig0028188:7921-7940 | Msa1437190:CDS | 45.0% | |
| TGGAGGGACATATATGCATG+GGG | + | tig0028188:7130-7149 | Msa1437190:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | - | tig0028188:7185-7204 | Msa1437190:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | - | tig0028188:7346-7365 | Msa1437190:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | - | tig0028188:7351-7370 | Msa1437190:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | - | tig0028188:7365-7384 | Msa1437190:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | + | tig0028188:7534-7553 | Msa1437190:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | + | tig0028188:7725-7744 | Msa1437190:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | + | tig0028188:7921-7940 | Msa1437190:CDS | 45.0% | |
| GGAGTGCGATTCACTGATGA+AGG | + | tig0028188:7908-7927 | Msa1437190:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | + | tig0028188:7911-7930 | Msa1437190:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | + | tig0028188:7927-7946 | Msa1437190:CDS | 50.0% | |
| GGAGTGCGATTCACTGATGA+AGG | + | tig0028188:7908-7927 | Msa1437190:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | + | tig0028188:7911-7930 | Msa1437190:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | + | tig0028188:7927-7946 | Msa1437190:CDS | 50.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | - | tig0028188:7292-7311 | Msa1437190:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | + | tig0028188:7933-7952 | Msa1437190:CDS | 55.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | - | tig0028188:7292-7311 | Msa1437190:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | + | tig0028188:7933-7952 | Msa1437190:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0028188 | gene | 7120 | 8022 | 7120 | ID=Msa1437190;Name=Msa1437190 |
| tig0028188 | mRNA | 7120 | 8022 | 7120 | ID=Msa1437190-mRNA-1;Parent=Msa1437190;Name=Msa1437190-mRNA-1;_AED=0.01;_eAED=0.01;_QI=0|-1|0|1|-1|1|1|0|300 |
| tig0028188 | exon | 7120 | 8022 | 7120 | ID=Msa1437190-mRNA-1:exon:10517;Parent=Msa1437190-mRNA-1 |
| tig0028188 | CDS | 7120 | 8022 | 7120 | ID=Msa1437190-mRNA-1:cds;Parent=Msa1437190-mRNA-1 |
| Gene Sequence |
| Protein sequence |
