AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470860


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 34 sgRNAs with CRISPR-Local

Find 238 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAGTGAATACAGCATTC+TGG 0.307625 3_3:+73069821 None:intergenic
AGCTCATTCCCTCCGGTTAG+AGG 0.341992 3_3:+73068073 None:intergenic
TTGGTGCGCCGTTTCCATTC+CGG 0.373453 3_3:-73068014 Msa0470860:CDS
AGAATGTTCATGTCCATGTT+TGG 0.385757 3_3:+73068109 None:intergenic
CTCTTGATGCTTCCTCTAAC+CGG 0.394494 3_3:-73068085 Msa0470860:CDS
TGTCTGCTGCAGACTTAGAT+TGG 0.399453 3_3:-73068033 Msa0470860:CDS
TGAACAGGATGGGGTGGCCG+AGG 0.409297 3_3:-73068147 Msa0470860:intron
TTCAGTGAATACAGCATTCT+GGG 0.409303 3_3:+73069822 None:intergenic
CGTTTGATCTCGATTGATCA+TGG 0.411796 3_3:+73067982 None:intergenic
ATTATAGGTGGCTCCGTCCC+TGG 0.426772 3_3:-73068664 Msa0470860:intron
AAAGAAAACCGGAATGGAAA+CGG 0.435532 3_3:+73068006 None:intergenic
CCGACAATCGTGGTTGCAAC+TGG 0.459388 3_3:+73069881 None:intergenic
TTGATCATGGAAAAGAAAAC+CGG 0.489124 3_3:+73067995 None:intergenic
CCAGTTGCAACCACGATTGT+CGG 0.498957 3_3:-73069881 Msa0470860:CDS
CTTCGTTGTGCAAGTGATTG+TGG 0.509528 3_3:+73068636 None:intergenic
GAACAGGATGGGGTGGCCGA+GGG 0.510010 3_3:-73068146 Msa0470860:intron
AATCACTTGCACAACGAAGC+AGG 0.517094 3_3:-73068632 Msa0470860:CDS
TACTGATAAAAGCATAATCC+TGG 0.519988 3_3:+73069857 None:intergenic
AAAATTTAGCTCATTCCCTC+CGG 0.520005 3_3:+73068066 None:intergenic
CATCACATTAATTCTATCAT+CGG 0.528138 3_3:+73067944 None:intergenic
TGAATACAGCATTCTGGGCG+AGG 0.532999 3_3:+73069827 None:intergenic
GCAACCACGATTGTCGGACC+AGG 0.544517 3_3:-73069875 Msa0470860:CDS
CAAGTGATTGTGGTGCAACC+AGG 0.558677 3_3:+73068646 None:intergenic
ATCACTTGCACAACGAAGCA+GGG 0.575010 3_3:-73068631 Msa0470860:CDS
CATGGAAAAGAAAACCGGAA+TGG 0.575984 3_3:+73068000 None:intergenic
AACTTCTGAACAGGATGGGG+TGG 0.581840 3_3:-73068153 Msa0470860:intron
GATTGTGGTGCAACCAGGGA+CGG 0.591641 3_3:+73068651 None:intergenic
CGGTTAGAGGAAGCATCAAG+AGG 0.632608 3_3:+73068086 None:intergenic
TTGATGCTTCCTCTAACCGG+AGG 0.635948 3_3:-73068082 Msa0470860:CDS
TGATGCTTCCTCTAACCGGA+GGG 0.648380 3_3:-73068081 Msa0470860:CDS
TGATCAATCGAGATCAAACG+AGG 0.656317 3_3:-73067979 Msa0470860:CDS
TAATCCTGGTCCGACAATCG+TGG 0.664467 3_3:+73069871 None:intergenic
AAGTGATTGTGGTGCAACCA+GGG 0.678211 3_3:+73068647 None:intergenic
GATCAATCGAGATCAAACGA+GGG 0.743681 3_3:-73067978 Msa0470860:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AACATCATTATATTATTTAT+TGG - chr3_3:73069018-73069037 Msa0470860:intron 10.0%
!!! CAGTAAATTTTAATTTAATT+TGG + chr3_3:73069295-73069314 None:intergenic 10.0%
!! AACATCATTATATTATTTAT+TGG - chr3_3:73069018-73069037 Msa0470860:intron 10.0%
!!! CAGTAAATTTTAATTTAATT+TGG + chr3_3:73069295-73069314 None:intergenic 10.0%
!!! TAATTTGTTTTATCCATAAA+AGG - chr3_3:73068901-73068920 Msa0470860:intron 15.0%
!! AAACCATAATTTAATATATG+TGG - chr3_3:73069626-73069645 Msa0470860:intron 15.0%
!!! TAATTTGTTTTATCCATAAA+AGG - chr3_3:73068901-73068920 Msa0470860:intron 15.0%
!! AAACCATAATTTAATATATG+TGG - chr3_3:73069626-73069645 Msa0470860:intron 15.0%
!!! ACATTTTACTTATGAAATCA+TGG + chr3_3:73068451-73068470 None:intergenic 20.0%
!! TTTCATAAGTAAAATGTCTT+TGG - chr3_3:73068454-73068473 Msa0470860:intron 20.0%
!!! TTTTTTTTGCTTGTATTTGA+CGG + chr3_3:73068500-73068519 None:intergenic 20.0%
!! CTTCACAATAAAATTTAAGA+TGG + chr3_3:73068523-73068542 None:intergenic 20.0%
!! AAGAACTAATAACTATAGTT+TGG - chr3_3:73068789-73068808 Msa0470860:intron 20.0%
!!! GGAGAATTTTATTGTTTAAT+TGG - chr3_3:73068968-73068987 Msa0470860:intron 20.0%
!! TTTATTGTTTAATTGGAATG+TGG - chr3_3:73068975-73068994 Msa0470860:intron 20.0%
!!! TACATGTACATTTTGATTAT+AGG - chr3_3:73069159-73069178 Msa0470860:intron 20.0%
!! ATGCCACATATATTAAATTA+TGG + chr3_3:73069632-73069651 None:intergenic 20.0%
!! TCGTTATTAATTCATAAATC+AGG - chr3_3:73069653-73069672 Msa0470860:intron 20.0%
!! TTATTAATTCATAAATCAGG+AGG - chr3_3:73069656-73069675 Msa0470860:intron 20.0%
!!! ACATTTTACTTATGAAATCA+TGG + chr3_3:73068451-73068470 None:intergenic 20.0%
!! TTTCATAAGTAAAATGTCTT+TGG - chr3_3:73068454-73068473 Msa0470860:intron 20.0%
!!! TTTTTTTTGCTTGTATTTGA+CGG + chr3_3:73068500-73068519 None:intergenic 20.0%
!! CTTCACAATAAAATTTAAGA+TGG + chr3_3:73068523-73068542 None:intergenic 20.0%
!! AAGAACTAATAACTATAGTT+TGG - chr3_3:73068789-73068808 Msa0470860:intron 20.0%
!!! GGAGAATTTTATTGTTTAAT+TGG - chr3_3:73068968-73068987 Msa0470860:intron 20.0%
!! TTTATTGTTTAATTGGAATG+TGG - chr3_3:73068975-73068994 Msa0470860:intron 20.0%
!!! TACATGTACATTTTGATTAT+AGG - chr3_3:73069159-73069178 Msa0470860:intron 20.0%
!! ATGCCACATATATTAAATTA+TGG + chr3_3:73069632-73069651 None:intergenic 20.0%
!! TCGTTATTAATTCATAAATC+AGG - chr3_3:73069653-73069672 Msa0470860:intron 20.0%
!! TTATTAATTCATAAATCAGG+AGG - chr3_3:73069656-73069675 Msa0470860:intron 20.0%
! TGTTACAGAAATTAGAATTG+AGG + chr3_3:73068120-73068139 None:intergenic 25.0%
!! ATAAACAATATCGACTATCA+AGG - chr3_3:73068249-73068268 Msa0470860:intron 25.0%
!! TAAACAATATCGACTATCAA+GGG - chr3_3:73068250-73068269 Msa0470860:intron 25.0%
!!! TTGTATGCATTTACTTTTGT+AGG + chr3_3:73068372-73068391 None:intergenic 25.0%
!!! ATACAAAAAAGTATCCATCA+AGG - chr3_3:73068386-73068405 Msa0470860:intron 25.0%
! AAATATCATGATTTCCTTGA+TGG + chr3_3:73068403-73068422 None:intergenic 25.0%
! TTGATATAGTAATTCGTCTT+GGG + chr3_3:73068610-73068629 None:intergenic 25.0%
! ATTGATATAGTAATTCGTCT+TGG + chr3_3:73068611-73068630 None:intergenic 25.0%
! TGTTAATGTTGTGTATAACT+CGG - chr3_3:73068663-73068682 Msa0470860:intron 25.0%
! CAATTACATCATTATGAGTT+TGG + chr3_3:73068728-73068747 None:intergenic 25.0%
!! TTAGCTTGACGTTAAATTAT+AGG + chr3_3:73068771-73068790 None:intergenic 25.0%
!! GTTTTATCCATAAAAGGAAT+TGG - chr3_3:73068907-73068926 Msa0470860:intron 25.0%
!!! ATGTACATTTTGATTATAGG+TGG - chr3_3:73069162-73069181 Msa0470860:intron 25.0%
! AATATAAGATGCAATATGAG+TGG - chr3_3:73069340-73069359 Msa0470860:intron 25.0%
! CTTACATAAACTAAAACAGA+AGG - chr3_3:73069545-73069564 Msa0470860:intron 25.0%
!!! GTACTTTATTTTTCCAAACA+TGG - chr3_3:73069716-73069735 Msa0470860:intron 25.0%
! TGTTACAGAAATTAGAATTG+AGG + chr3_3:73068120-73068139 None:intergenic 25.0%
!! ATAAACAATATCGACTATCA+AGG - chr3_3:73068249-73068268 Msa0470860:intron 25.0%
!! TAAACAATATCGACTATCAA+GGG - chr3_3:73068250-73068269 Msa0470860:intron 25.0%
!!! TTGTATGCATTTACTTTTGT+AGG + chr3_3:73068372-73068391 None:intergenic 25.0%
!!! ATACAAAAAAGTATCCATCA+AGG - chr3_3:73068386-73068405 Msa0470860:intron 25.0%
! AAATATCATGATTTCCTTGA+TGG + chr3_3:73068403-73068422 None:intergenic 25.0%
! TTGATATAGTAATTCGTCTT+GGG + chr3_3:73068610-73068629 None:intergenic 25.0%
! ATTGATATAGTAATTCGTCT+TGG + chr3_3:73068611-73068630 None:intergenic 25.0%
! TGTTAATGTTGTGTATAACT+CGG - chr3_3:73068663-73068682 Msa0470860:intron 25.0%
! CAATTACATCATTATGAGTT+TGG + chr3_3:73068728-73068747 None:intergenic 25.0%
!! TTAGCTTGACGTTAAATTAT+AGG + chr3_3:73068771-73068790 None:intergenic 25.0%
!! GTTTTATCCATAAAAGGAAT+TGG - chr3_3:73068907-73068926 Msa0470860:intron 25.0%
!!! ATGTACATTTTGATTATAGG+TGG - chr3_3:73069162-73069181 Msa0470860:intron 25.0%
! AATATAAGATGCAATATGAG+TGG - chr3_3:73069340-73069359 Msa0470860:intron 25.0%
! CTTACATAAACTAAAACAGA+AGG - chr3_3:73069545-73069564 Msa0470860:intron 25.0%
!!! GTACTTTATTTTTCCAAACA+TGG - chr3_3:73069716-73069735 Msa0470860:intron 25.0%
! TACTGATAAAAGCATAATCC+TGG + chr3_3:73067984-73068003 None:intergenic 30.0%
TGACGTTAAATTATAGGACA+AGG + chr3_3:73068765-73068784 None:intergenic 30.0%
! AAATCTAAAATGACAAAGCG+TGG + chr3_3:73068835-73068854 None:intergenic 30.0%
! ATCAAGTCCAATTCCTTTTA+TGG + chr3_3:73068917-73068936 None:intergenic 30.0%
TTGCAATTACAGATAGTGTT+TGG - chr3_3:73068941-73068960 Msa0470860:intron 30.0%
AATGCATTCATTTATTGCCA+AGG - chr3_3:73069092-73069111 Msa0470860:intron 30.0%
ATGCATTCATTTATTGCCAA+GGG - chr3_3:73069093-73069112 Msa0470860:intron 30.0%
! TTTATGTTCGTTGCAGTTTT+CGG + chr3_3:73069385-73069404 None:intergenic 30.0%
AAAACTGCAACGAACATAAA+AGG - chr3_3:73069385-73069404 Msa0470860:intron 30.0%
! CGAACATAAAAGGTATGTAT+AGG - chr3_3:73069395-73069414 Msa0470860:intron 30.0%
! CATAAAAGGTATGTATAGGA+AGG - chr3_3:73069399-73069418 Msa0470860:intron 30.0%
TAGTTTATGTAAGAGTCTCA+CGG + chr3_3:73069538-73069557 None:intergenic 30.0%
TTGATCATGGAAAAGAAAAC+CGG + chr3_3:73069846-73069865 None:intergenic 30.0%
! TACTGATAAAAGCATAATCC+TGG + chr3_3:73067984-73068003 None:intergenic 30.0%
TGACGTTAAATTATAGGACA+AGG + chr3_3:73068765-73068784 None:intergenic 30.0%
! AAATCTAAAATGACAAAGCG+TGG + chr3_3:73068835-73068854 None:intergenic 30.0%
! ATCAAGTCCAATTCCTTTTA+TGG + chr3_3:73068917-73068936 None:intergenic 30.0%
TTGCAATTACAGATAGTGTT+TGG - chr3_3:73068941-73068960 Msa0470860:intron 30.0%
AATGCATTCATTTATTGCCA+AGG - chr3_3:73069092-73069111 Msa0470860:intron 30.0%
ATGCATTCATTTATTGCCAA+GGG - chr3_3:73069093-73069112 Msa0470860:intron 30.0%
! TTTATGTTCGTTGCAGTTTT+CGG + chr3_3:73069385-73069404 None:intergenic 30.0%
AAAACTGCAACGAACATAAA+AGG - chr3_3:73069385-73069404 Msa0470860:intron 30.0%
! CGAACATAAAAGGTATGTAT+AGG - chr3_3:73069395-73069414 Msa0470860:intron 30.0%
! CATAAAAGGTATGTATAGGA+AGG - chr3_3:73069399-73069418 Msa0470860:intron 30.0%
TAGTTTATGTAAGAGTCTCA+CGG + chr3_3:73069538-73069557 None:intergenic 30.0%
TTGATCATGGAAAAGAAAAC+CGG + chr3_3:73069846-73069865 None:intergenic 30.0%
TTCAGTGAATACAGCATTCT+GGG + chr3_3:73068019-73068038 None:intergenic 35.0%
TTCACTGAAGAAGCTACAAT+TGG - chr3_3:73068030-73068049 Msa0470860:CDS 35.0%
GAGCCAGGATAAATTATCAA+GGG - chr3_3:73068206-73068225 Msa0470860:intron 35.0%
GAAAAACATGCTTTGTAGAC+TGG - chr3_3:73068569-73068588 Msa0470860:intron 35.0%
ATTCATTTATTGCCAAGGGA+GGG - chr3_3:73069097-73069116 Msa0470860:intron 35.0%
AGTTCATAGTTCCACATAAG+TGG - chr3_3:73069257-73069276 Msa0470860:intron 35.0%
!! TGTTTTTGTCACCACTTATG+TGG + chr3_3:73069271-73069290 None:intergenic 35.0%
GGAAAAATAAAGTACACCCT+CGG + chr3_3:73069711-73069730 None:intergenic 35.0%
AGAATGTTCATGTCCATGTT+TGG + chr3_3:73069732-73069751 None:intergenic 35.0%
! AAAATTTAGCTCATTCCCTC+CGG + chr3_3:73069775-73069794 None:intergenic 35.0%
AAAGAAAACCGGAATGGAAA+CGG + chr3_3:73069835-73069854 None:intergenic 35.0%
TTCAGTGAATACAGCATTCT+GGG + chr3_3:73068019-73068038 None:intergenic 35.0%
TTCACTGAAGAAGCTACAAT+TGG - chr3_3:73068030-73068049 Msa0470860:CDS 35.0%
GAGCCAGGATAAATTATCAA+GGG - chr3_3:73068206-73068225 Msa0470860:intron 35.0%
GAAAAACATGCTTTGTAGAC+TGG - chr3_3:73068569-73068588 Msa0470860:intron 35.0%
ATTCATTTATTGCCAAGGGA+GGG - chr3_3:73069097-73069116 Msa0470860:intron 35.0%
AGTTCATAGTTCCACATAAG+TGG - chr3_3:73069257-73069276 Msa0470860:intron 35.0%
!! TGTTTTTGTCACCACTTATG+TGG + chr3_3:73069271-73069290 None:intergenic 35.0%
GGAAAAATAAAGTACACCCT+CGG + chr3_3:73069711-73069730 None:intergenic 35.0%
AGAATGTTCATGTCCATGTT+TGG + chr3_3:73069732-73069751 None:intergenic 35.0%
! AAAATTTAGCTCATTCCCTC+CGG + chr3_3:73069775-73069794 None:intergenic 35.0%
AAAGAAAACCGGAATGGAAA+CGG + chr3_3:73069835-73069854 None:intergenic 35.0%
CTTCAGTGAATACAGCATTC+TGG + chr3_3:73068020-73068039 None:intergenic 40.0%
TTCAACTTCGTGTTGTCTAG+AGG + chr3_3:73068061-73068080 None:intergenic 40.0%
GGAGCCAGGATAAATTATCA+AGG - chr3_3:73068205-73068224 Msa0470860:intron 40.0%
! CCACCCTTGATAATTTATCC+TGG + chr3_3:73068212-73068231 None:intergenic 40.0%
CCAGGATAAATTATCAAGGG+TGG - chr3_3:73068209-73068228 Msa0470860:intron 40.0%
! ACAATATCGACTATCAAGGG+TGG - chr3_3:73068253-73068272 Msa0470860:intron 40.0%
CAATGAAGCTTGTGAGAACA+AGG + chr3_3:73068546-73068565 None:intergenic 40.0%
CATGCTTTGTAGACTGGAAT+CGG - chr3_3:73068575-73068594 Msa0470860:intron 40.0%
TTACAGATAGTGTTTGGCAG+TGG - chr3_3:73068947-73068966 Msa0470860:intron 40.0%
CATTCATTTATTGCCAAGGG+AGG - chr3_3:73069096-73069115 Msa0470860:intron 40.0%
TTCATTTATTGCCAAGGGAG+GGG - chr3_3:73069098-73069117 Msa0470860:intron 40.0%
CATGGAAAAGAAAACCGGAA+TGG + chr3_3:73069841-73069860 None:intergenic 40.0%
CGTTTGATCTCGATTGATCA+TGG + chr3_3:73069859-73069878 None:intergenic 40.0%
TGATCAATCGAGATCAAACG+AGG - chr3_3:73069859-73069878 Msa0470860:CDS 40.0%
GATCAATCGAGATCAAACGA+GGG - chr3_3:73069860-73069879 Msa0470860:CDS 40.0%
CTTCAGTGAATACAGCATTC+TGG + chr3_3:73068020-73068039 None:intergenic 40.0%
TTCAACTTCGTGTTGTCTAG+AGG + chr3_3:73068061-73068080 None:intergenic 40.0%
GGAGCCAGGATAAATTATCA+AGG - chr3_3:73068205-73068224 Msa0470860:intron 40.0%
! CCACCCTTGATAATTTATCC+TGG + chr3_3:73068212-73068231 None:intergenic 40.0%
CCAGGATAAATTATCAAGGG+TGG - chr3_3:73068209-73068228 Msa0470860:intron 40.0%
! ACAATATCGACTATCAAGGG+TGG - chr3_3:73068253-73068272 Msa0470860:intron 40.0%
CAATGAAGCTTGTGAGAACA+AGG + chr3_3:73068546-73068565 None:intergenic 40.0%
CATGCTTTGTAGACTGGAAT+CGG - chr3_3:73068575-73068594 Msa0470860:intron 40.0%
TTACAGATAGTGTTTGGCAG+TGG - chr3_3:73068947-73068966 Msa0470860:intron 40.0%
CATTCATTTATTGCCAAGGG+AGG - chr3_3:73069096-73069115 Msa0470860:intron 40.0%
TTCATTTATTGCCAAGGGAG+GGG - chr3_3:73069098-73069117 Msa0470860:intron 40.0%
CATGGAAAAGAAAACCGGAA+TGG + chr3_3:73069841-73069860 None:intergenic 40.0%
CGTTTGATCTCGATTGATCA+TGG + chr3_3:73069859-73069878 None:intergenic 40.0%
TGATCAATCGAGATCAAACG+AGG - chr3_3:73069859-73069878 Msa0470860:CDS 40.0%
GATCAATCGAGATCAAACGA+GGG - chr3_3:73069860-73069879 Msa0470860:CDS 40.0%
GATGAGCCATGAAGAGACAT+GGG + chr3_3:73068098-73068117 None:intergenic 45.0%
ACCAATCATGCCCTAGTGAA+TGG - chr3_3:73068161-73068180 Msa0470860:intron 45.0%
TCCATTCACTAGGGCATGAT+TGG + chr3_3:73068165-73068184 None:intergenic 45.0%
AATCATGCCCTAGTGAATGG+AGG - chr3_3:73068164-73068183 Msa0470860:intron 45.0%
CAACGTACCTCCATTCACTA+GGG + chr3_3:73068174-73068193 None:intergenic 45.0%
GTTCTCACAAGCTTCATTGC+TGG - chr3_3:73068547-73068566 Msa0470860:intron 45.0%
AAGTGATTGTGGTGCAACCA+GGG + chr3_3:73069194-73069213 None:intergenic 45.0%
CTTCGTTGTGCAAGTGATTG+TGG + chr3_3:73069205-73069224 None:intergenic 45.0%
AATCACTTGCACAACGAAGC+AGG - chr3_3:73069206-73069225 Msa0470860:intron 45.0%
ATCACTTGCACAACGAAGCA+GGG - chr3_3:73069207-73069226 Msa0470860:intron 45.0%
TTTACTGTCTGTCTCGTTGC+AGG - chr3_3:73069308-73069327 Msa0470860:intron 45.0%
AGGATGCCTAACTTCTGAAC+AGG - chr3_3:73069676-73069695 Msa0470860:intron 45.0%
TGCCTAACTTCTGAACAGGA+TGG - chr3_3:73069680-73069699 Msa0470860:intron 45.0%
GCCTAACTTCTGAACAGGAT+GGG - chr3_3:73069681-73069700 Msa0470860:intron 45.0%
CCTAACTTCTGAACAGGATG+GGG - chr3_3:73069682-73069701 Msa0470860:intron 45.0%
CTCTTGATGCTTCCTCTAAC+CGG - chr3_3:73069753-73069772 Msa0470860:intron 45.0%
TGTCTGCTGCAGACTTAGAT+TGG - chr3_3:73069805-73069824 Msa0470860:intron 45.0%
GATGAGCCATGAAGAGACAT+GGG + chr3_3:73068098-73068117 None:intergenic 45.0%
ACCAATCATGCCCTAGTGAA+TGG - chr3_3:73068161-73068180 Msa0470860:intron 45.0%
TCCATTCACTAGGGCATGAT+TGG + chr3_3:73068165-73068184 None:intergenic 45.0%
AATCATGCCCTAGTGAATGG+AGG - chr3_3:73068164-73068183 Msa0470860:intron 45.0%
CAACGTACCTCCATTCACTA+GGG + chr3_3:73068174-73068193 None:intergenic 45.0%
GTTCTCACAAGCTTCATTGC+TGG - chr3_3:73068547-73068566 Msa0470860:intron 45.0%
AAGTGATTGTGGTGCAACCA+GGG + chr3_3:73069194-73069213 None:intergenic 45.0%
CTTCGTTGTGCAAGTGATTG+TGG + chr3_3:73069205-73069224 None:intergenic 45.0%
AATCACTTGCACAACGAAGC+AGG - chr3_3:73069206-73069225 Msa0470860:intron 45.0%
ATCACTTGCACAACGAAGCA+GGG - chr3_3:73069207-73069226 Msa0470860:intron 45.0%
TTTACTGTCTGTCTCGTTGC+AGG - chr3_3:73069308-73069327 Msa0470860:intron 45.0%
AGGATGCCTAACTTCTGAAC+AGG - chr3_3:73069676-73069695 Msa0470860:intron 45.0%
TGCCTAACTTCTGAACAGGA+TGG - chr3_3:73069680-73069699 Msa0470860:intron 45.0%
GCCTAACTTCTGAACAGGAT+GGG - chr3_3:73069681-73069700 Msa0470860:intron 45.0%
CCTAACTTCTGAACAGGATG+GGG - chr3_3:73069682-73069701 Msa0470860:intron 45.0%
CTCTTGATGCTTCCTCTAAC+CGG - chr3_3:73069753-73069772 Msa0470860:intron 45.0%
TGTCTGCTGCAGACTTAGAT+TGG - chr3_3:73069805-73069824 Msa0470860:intron 45.0%
!! TGTATATTATAAAAATAAAA+AGG - chr3_3:73069062-73069081 Msa0470860:intron 5.0%
!! TGTATATTATAAAAATAAAA+AGG - chr3_3:73069062-73069081 Msa0470860:intron 5.0%
CCAGTTGCAACCACGATTGT+CGG - chr3_3:73067957-73067976 Msa0470860:CDS 50.0%
TAATCCTGGTCCGACAATCG+TGG + chr3_3:73067970-73067989 None:intergenic 50.0%
TGAATACAGCATTCTGGGCG+AGG + chr3_3:73068014-73068033 None:intergenic 50.0%
AAGAGACATGGGATGCGACA+CGG + chr3_3:73068087-73068106 None:intergenic 50.0%
TCGCATCCCATGTCTCTTCA+TGG - chr3_3:73068089-73068108 Msa0470860:CDS 50.0%
GGATGAGCCATGAAGAGACA+TGG + chr3_3:73068099-73068118 None:intergenic 50.0%
GCAACGTACCTCCATTCACT+AGG + chr3_3:73068175-73068194 None:intergenic 50.0%
TTTATCCTGGCTCCATCCCT+GGG + chr3_3:73068199-73068218 None:intergenic 50.0%
ATTTATCCTGGCTCCATCCC+TGG + chr3_3:73068200-73068219 None:intergenic 50.0%
TGGCTGCAGAGTCATGTTTG+TGG + chr3_3:73068815-73068834 None:intergenic 50.0%
ATTTATTGCCAAGGGAGGGG+TGG - chr3_3:73069101-73069120 Msa0470860:intron 50.0%
CAAGTGATTGTGGTGCAACC+AGG + chr3_3:73069195-73069214 None:intergenic 50.0%
CCCCATCCTGTTCAGAAGTT+AGG + chr3_3:73069685-73069704 None:intergenic 50.0%
AACTTCTGAACAGGATGGGG+TGG - chr3_3:73069685-73069704 Msa0470860:intron 50.0%
!! CGGTTAGAGGAAGCATCAAG+AGG + chr3_3:73069755-73069774 None:intergenic 50.0%
TTGATGCTTCCTCTAACCGG+AGG - chr3_3:73069756-73069775 Msa0470860:intron 50.0%
TGATGCTTCCTCTAACCGGA+GGG - chr3_3:73069757-73069776 Msa0470860:intron 50.0%
CCAGTTGCAACCACGATTGT+CGG - chr3_3:73067957-73067976 Msa0470860:CDS 50.0%
TAATCCTGGTCCGACAATCG+TGG + chr3_3:73067970-73067989 None:intergenic 50.0%
TGAATACAGCATTCTGGGCG+AGG + chr3_3:73068014-73068033 None:intergenic 50.0%
AAGAGACATGGGATGCGACA+CGG + chr3_3:73068087-73068106 None:intergenic 50.0%
TCGCATCCCATGTCTCTTCA+TGG - chr3_3:73068089-73068108 Msa0470860:CDS 50.0%
GGATGAGCCATGAAGAGACA+TGG + chr3_3:73068099-73068118 None:intergenic 50.0%
GCAACGTACCTCCATTCACT+AGG + chr3_3:73068175-73068194 None:intergenic 50.0%
TTTATCCTGGCTCCATCCCT+GGG + chr3_3:73068199-73068218 None:intergenic 50.0%
ATTTATCCTGGCTCCATCCC+TGG + chr3_3:73068200-73068219 None:intergenic 50.0%
TGGCTGCAGAGTCATGTTTG+TGG + chr3_3:73068815-73068834 None:intergenic 50.0%
ATTTATTGCCAAGGGAGGGG+TGG - chr3_3:73069101-73069120 Msa0470860:intron 50.0%
CAAGTGATTGTGGTGCAACC+AGG + chr3_3:73069195-73069214 None:intergenic 50.0%
CCCCATCCTGTTCAGAAGTT+AGG + chr3_3:73069685-73069704 None:intergenic 50.0%
AACTTCTGAACAGGATGGGG+TGG - chr3_3:73069685-73069704 Msa0470860:intron 50.0%
!! CGGTTAGAGGAAGCATCAAG+AGG + chr3_3:73069755-73069774 None:intergenic 50.0%
TTGATGCTTCCTCTAACCGG+AGG - chr3_3:73069756-73069775 Msa0470860:intron 50.0%
TGATGCTTCCTCTAACCGGA+GGG - chr3_3:73069757-73069776 Msa0470860:intron 50.0%
CCGACAATCGTGGTTGCAAC+TGG + chr3_3:73067960-73067979 None:intergenic 55.0%
AGAGACATGGGATGCGACAC+GGG + chr3_3:73068086-73068105 None:intergenic 55.0%
! AATGGAGGTACGTTGCACCC+AGG - chr3_3:73068179-73068198 Msa0470860:intron 55.0%
! ATGGAGGTACGTTGCACCCA+GGG - chr3_3:73068180-73068199 Msa0470860:intron 55.0%
ATTATAGGTGGCTCCGTCCC+TGG - chr3_3:73069174-73069193 Msa0470860:intron 55.0%
GATTGTGGTGCAACCAGGGA+CGG + chr3_3:73069190-73069209 None:intergenic 55.0%
AGCTCATTCCCTCCGGTTAG+AGG + chr3_3:73069768-73069787 None:intergenic 55.0%
TTGGTGCGCCGTTTCCATTC+CGG - chr3_3:73069824-73069843 Msa0470860:intron 55.0%
CCGACAATCGTGGTTGCAAC+TGG + chr3_3:73067960-73067979 None:intergenic 55.0%
AGAGACATGGGATGCGACAC+GGG + chr3_3:73068086-73068105 None:intergenic 55.0%
! AATGGAGGTACGTTGCACCC+AGG - chr3_3:73068179-73068198 Msa0470860:intron 55.0%
! ATGGAGGTACGTTGCACCCA+GGG - chr3_3:73068180-73068199 Msa0470860:intron 55.0%
ATTATAGGTGGCTCCGTCCC+TGG - chr3_3:73069174-73069193 Msa0470860:intron 55.0%
GATTGTGGTGCAACCAGGGA+CGG + chr3_3:73069190-73069209 None:intergenic 55.0%
AGCTCATTCCCTCCGGTTAG+AGG + chr3_3:73069768-73069787 None:intergenic 55.0%
TTGGTGCGCCGTTTCCATTC+CGG - chr3_3:73069824-73069843 Msa0470860:intron 55.0%
GCAACCACGATTGTCGGACC+AGG - chr3_3:73067963-73067982 Msa0470860:CDS 60.0%
AGGTACGTTGCACCCAGGGA+TGG - chr3_3:73068184-73068203 Msa0470860:intron 60.0%
AATGATCGCCACCCCTCCCT+TGG + chr3_3:73069112-73069131 None:intergenic 60.0%
GCAACCACGATTGTCGGACC+AGG - chr3_3:73067963-73067982 Msa0470860:CDS 60.0%
AGGTACGTTGCACCCAGGGA+TGG - chr3_3:73068184-73068203 Msa0470860:intron 60.0%
AATGATCGCCACCCCTCCCT+TGG + chr3_3:73069112-73069131 None:intergenic 60.0%
TTGCACCCAGGGATGGAGCC+AGG - chr3_3:73068191-73068210 Msa0470860:intron 65.0%
TGAACAGGATGGGGTGGCCG+AGG - chr3_3:73069691-73069710 Msa0470860:intron 65.0%
GAACAGGATGGGGTGGCCGA+GGG - chr3_3:73069692-73069711 Msa0470860:intron 65.0%
TTGCACCCAGGGATGGAGCC+AGG - chr3_3:73068191-73068210 Msa0470860:intron 65.0%
TGAACAGGATGGGGTGGCCG+AGG - chr3_3:73069691-73069710 Msa0470860:intron 65.0%
GAACAGGATGGGGTGGCCGA+GGG - chr3_3:73069692-73069711 Msa0470860:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 73067946 73069914 73067946 ID=Msa0470860;Name=Msa0470860
chr3_3 mRNA 73067946 73069914 73067946 ID=Msa0470860-mRNA-1;Parent=Msa0470860;Name=Msa0470860-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|3|0|124
chr3_3 exon 73069834 73069914 73069834 ID=Msa0470860-mRNA-1:exon:18462;Parent=Msa0470860-mRNA-1
chr3_3 exon 73068603 73068679 73068603 ID=Msa0470860-mRNA-1:exon:18461;Parent=Msa0470860-mRNA-1
chr3_3 exon 73067946 73068162 73067946 ID=Msa0470860-mRNA-1:exon:18460;Parent=Msa0470860-mRNA-1
chr3_3 CDS 73069834 73069914 73069834 ID=Msa0470860-mRNA-1:cds;Parent=Msa0470860-mRNA-1
chr3_3 CDS 73068603 73068679 73068603 ID=Msa0470860-mRNA-1:cds;Parent=Msa0470860-mRNA-1
chr3_3 CDS 73067946 73068162 73067946 ID=Msa0470860-mRNA-1:cds;Parent=Msa0470860-mRNA-1
Gene Sequence

>Msa0470860

ATGGAAGAGAACCAGTTGCAACCACGATTGTCGGACCAGGATTATGCTTTTATCAGTATCTACGTCCTCGCCCAGAATGCTGTGGCTCCGTCCCTGGTTGCACCACAATCACTTGCACAACGAAGCAGGGAAACTTCTTTGTCTGCTGTACTGTCGAAGATGGGGTGGCCGAGGGTGTACTTTATTTTTCCAAACATGGACATGAACATTCTCCTCTTGATGCTTCCTCTAACCGGAGGGAATGAGCTAAATTTTCTGAAGTTCTTGTCTGCTGCAGACTTAGATTGGTGCGCCGTTTCCATTCCGGTTTTCTTTTCCATGATCAATCGAGATCAAACGAGGGTTTTGCTTGATCCGATGATAGAATTAATGTGA

Protein sequence

>Msa0470860

MEENQLQPRLSDQDYAFISIYVLAQNAVAPSLVAPQSLAQRSRETSLSAVLSKMGWPRVYFIFPNMDMNILLLMLPLTGGNELNFLKFLSAADLDWCAVSIPVFFSMINRDQTRVLLDPMIELM*