Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0470860 | KEH35377.1 | 74.468 | 141 | 18 | 4 | 1 | 124 | 1 | 140 | 1.00e-59 | 190 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0470860 | A0A072V0S2 | 74.468 | 141 | 18 | 4 | 1 | 124 | 1 | 140 | 4.78e-60 | 190 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0044100 | Msa0470860 | 0.861938 | 7.214395e-64 | -8.615850e-47 |
Msa0095540 | Msa0470860 | 0.845108 | 4.987862e-59 | -8.615850e-47 |
Msa0141100 | Msa0470860 | 0.875699 | 2.507882e-68 | -8.615850e-47 |
Msa0183750 | Msa0470860 | 0.861173 | 1.235373e-63 | -8.615850e-47 |
Msa0185380 | Msa0470860 | 0.815848 | 7.493094e-52 | -8.615850e-47 |
Msa0191040 | Msa0470860 | 0.821434 | 4.046099e-53 | -8.615850e-47 |
Msa0220300 | Msa0470860 | 0.811139 | 8.130974e-51 | -8.615850e-47 |
Msa0225600 | Msa0470860 | 0.811399 | 7.137298e-51 | -8.615850e-47 |
Msa0233340 | Msa0470860 | 0.821709 | 3.495039e-53 | -8.615850e-47 |
Msa0374850 | Msa0470860 | 0.866796 | 2.193325e-65 | -8.615850e-47 |
Msa0375090 | Msa0470860 | 0.862121 | 6.341055e-64 | -8.615850e-47 |
Msa0385670 | Msa0470860 | 0.883035 | 6.306999e-71 | -8.615850e-47 |
Msa0435670 | Msa0470860 | 0.850093 | 2.122247e-60 | -8.615850e-47 |
Msa0470340 | Msa0470860 | 0.872439 | 3.177738e-67 | -8.615850e-47 |
Msa0470860 | Msa0479680 | 0.864318 | 1.325788e-64 | -8.615850e-47 |
Msa0470860 | Msa0479700 | 0.856313 | 3.500433e-62 | -8.615850e-47 |
Msa0470860 | Msa0480950 | 0.860821 | 1.580768e-63 | -8.615850e-47 |
Msa0470860 | Msa0481110 | 0.811660 | 6.266227e-51 | -8.615850e-47 |
Msa0470860 | Msa0531430 | 0.877252 | 7.292224e-69 | -8.615850e-47 |
Msa0470860 | Msa0534570 | 0.809907 | 1.500414e-50 | -8.615850e-47 |
Msa0470860 | Msa0534590 | 0.857993 | 1.117551e-62 | -8.615850e-47 |
Msa0470860 | Msa0565600 | 0.868817 | 4.925586e-66 | -8.615850e-47 |
Msa0470860 | Msa0574460 | 0.803252 | 3.809009e-49 | -8.615850e-47 |
Msa0470860 | Msa0590800 | 0.862433 | 5.087274e-64 | -8.615850e-47 |
Msa0470860 | Msa0611380 | 0.859110 | 5.186320e-63 | -8.615850e-47 |
Msa0470860 | Msa0618180 | 0.866821 | 2.153615e-65 | -8.615850e-47 |
Msa0470860 | Msa0618220 | 0.838091 | 3.532355e-57 | -8.615850e-47 |
Msa0470860 | Msa0618290 | 0.803465 | 3.441939e-49 | -8.615850e-47 |
Msa0470860 | Msa0628640 | 0.864705 | 1.003069e-64 | -8.615850e-47 |
Msa0470860 | Msa0631120 | 0.863171 | 3.011964e-64 | -8.615850e-47 |
Msa0470860 | Msa0650070 | 0.817016 | 4.103422e-52 | -8.615850e-47 |
Msa0470860 | Msa0653020 | 0.808969 | 2.384582e-50 | -8.615850e-47 |
Msa0470860 | Msa0666030 | 0.863776 | 1.955219e-64 | -8.615850e-47 |
Msa0470860 | Msa0669340 | 0.860506 | 1.969423e-63 | -8.615850e-47 |
Msa0470860 | Msa0684500 | 0.807130 | 5.873438e-50 | -8.615850e-47 |
Msa0470860 | Msa0692060 | 0.811779 | 5.901938e-51 | -8.615850e-47 |
Msa0470860 | Msa0701970 | 0.857301 | 1.791589e-62 | -8.615850e-47 |
Msa0470860 | Msa0716450 | 0.858960 | 5.751853e-63 | -8.615850e-47 |
Msa0470860 | Msa0717260 | 0.863792 | 1.932683e-64 | -8.615850e-47 |
Msa0470860 | Msa0734230 | 0.817787 | 2.750456e-52 | -8.615850e-47 |
Msa0470860 | Msa0758320 | 0.867103 | 1.750684e-65 | -8.615850e-47 |
Msa0470860 | Msa0775440 | 0.845951 | 2.948204e-59 | -8.615850e-47 |
Msa0470860 | Msa0799030 | 0.858505 | 7.868729e-63 | -8.615850e-47 |
Msa0470860 | Msa0799700 | 0.839656 | 1.390522e-57 | -8.615850e-47 |
Msa0470860 | Msa0812820 | 0.846413 | 2.206600e-59 | -8.615850e-47 |
Msa0470860 | Msa0822990 | 0.801132 | 1.039941e-48 | -8.615850e-47 |
Msa0470860 | Msa0837440 | 0.845265 | 4.522474e-59 | -8.615850e-47 |
Msa0470860 | Msa0837980 | 0.884511 | 1.802256e-71 | -8.615850e-47 |
Msa0470860 | Msa0853320 | 0.846037 | 2.792499e-59 | -8.615850e-47 |
Msa0470860 | Msa0966340 | 0.812669 | 3.773133e-51 | -8.615850e-47 |
Msa0470860 | Msa0966440 | 0.811427 | 7.038712e-51 | -8.615850e-47 |
Msa0470860 | Msa0981010 | 0.810329 | 1.216723e-50 | -8.615850e-47 |
Msa0470860 | Msa1001770 | 0.820011 | 8.592550e-53 | -8.615850e-47 |
Msa0470860 | Msa1002620 | 0.846773 | 1.759389e-59 | -8.615850e-47 |
Msa0470860 | Msa1033560 | 0.801751 | 7.767266e-49 | -8.615850e-47 |
Msa0470860 | Msa1113850 | 0.824101 | 9.686440e-54 | -8.615850e-47 |
Msa0470860 | Msa1160400 | 0.808565 | 2.908988e-50 | -8.615850e-47 |
Msa0470860 | Msa1190120 | 0.872175 | 3.892218e-67 | -8.615850e-47 |
Msa0470860 | Msa1197590 | 0.818229 | 2.186170e-52 | -8.615850e-47 |
Msa0470860 | Msa1203000 | 0.856363 | 3.385276e-62 | -8.615850e-47 |
Msa0470860 | Msa1211550 | 0.845412 | 4.126787e-59 | -8.615850e-47 |
Msa0470860 | Msa1217940 | 0.823395 | 1.417401e-53 | -8.615850e-47 |
Msa0470860 | Msa1219260 | 0.893806 | 4.459314e-75 | -8.615850e-47 |
Msa0470860 | Msa1227950 | 0.849177 | 3.822760e-60 | -8.615850e-47 |
Msa0470860 | Msa1227970 | 0.846030 | 2.805059e-59 | -8.615850e-47 |
Msa0470860 | Msa1255280 | 0.847777 | 9.330816e-60 | -8.615850e-47 |
Msa0470860 | Msa1258050 | 0.831300 | 1.805125e-55 | -8.615850e-47 |
Msa0470860 | Msa1266960 | 0.895229 | 1.169125e-75 | -8.615850e-47 |
Msa0470860 | Msa1291870 | 0.836551 | 8.757244e-57 | -8.615850e-47 |
Msa0470860 | Msa1308130 | 0.841231 | 5.387733e-58 | -8.615850e-47 |
Msa0470860 | Msa1329920 | 0.827674 | 1.373261e-54 | -8.615850e-47 |
Msa0470860 | Msa1339940 | 0.848803 | 4.856365e-60 | -8.615850e-47 |
Msa0470860 | Msa1369700 | 0.845352 | 4.284068e-59 | -8.615850e-47 |
Msa0470860 | Msa1381140 | 0.820539 | 6.504209e-53 | -8.615850e-47 |
Msa0470860 | Msa1395870 | 0.872870 | 2.280666e-67 | -8.615850e-47 |
Msa0470860 | Msa1397250 | 0.829005 | 6.557604e-55 | -8.615850e-47 |
Msa0470860 | Msa1399560 | 0.903061 | 5.114977e-79 | -8.615850e-47 |
Msa0470860 | Msa1401150 | 0.815913 | 7.246463e-52 | -8.615850e-47 |
Msa0470860 | Msa1437190 | 0.871065 | 9.076368e-67 | -8.615850e-47 |
Msa0470860 | Msa1443840 | 0.864937 | 8.485723e-65 | -8.615850e-47 |
Msa0470860 | Msa1452060 | 0.851390 | 9.154144e-61 | -8.615850e-47 |
Msa0470860 | Msa1460380 | 0.863783 | 1.945780e-64 | -8.615850e-47 |
Msa0470860 | Msa1460890 | 0.808767 | 2.634847e-50 | -8.615850e-47 |
Msa0251240 | Msa0470860 | 0.818915 | 1.527328e-52 | -8.615850e-47 |
Msa0266450 | Msa0470860 | 0.812580 | 3.946859e-51 | -8.615850e-47 |
Msa0311690 | Msa0470860 | 0.811118 | 8.213627e-51 | -8.615850e-47 |
Msa0315250 | Msa0470860 | 0.817616 | 3.007032e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 34 sgRNAs with CRISPR-Local
Find 238 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
CTTCAGTGAATACAGCATTC+TGG | 0.307625 | 3_3:+73069821 | None:intergenic |
AGCTCATTCCCTCCGGTTAG+AGG | 0.341992 | 3_3:+73068073 | None:intergenic |
TTGGTGCGCCGTTTCCATTC+CGG | 0.373453 | 3_3:-73068014 | Msa0470860:CDS |
AGAATGTTCATGTCCATGTT+TGG | 0.385757 | 3_3:+73068109 | None:intergenic |
CTCTTGATGCTTCCTCTAAC+CGG | 0.394494 | 3_3:-73068085 | Msa0470860:CDS |
TGTCTGCTGCAGACTTAGAT+TGG | 0.399453 | 3_3:-73068033 | Msa0470860:CDS |
TGAACAGGATGGGGTGGCCG+AGG | 0.409297 | 3_3:-73068147 | Msa0470860:intron |
TTCAGTGAATACAGCATTCT+GGG | 0.409303 | 3_3:+73069822 | None:intergenic |
CGTTTGATCTCGATTGATCA+TGG | 0.411796 | 3_3:+73067982 | None:intergenic |
ATTATAGGTGGCTCCGTCCC+TGG | 0.426772 | 3_3:-73068664 | Msa0470860:intron |
AAAGAAAACCGGAATGGAAA+CGG | 0.435532 | 3_3:+73068006 | None:intergenic |
CCGACAATCGTGGTTGCAAC+TGG | 0.459388 | 3_3:+73069881 | None:intergenic |
TTGATCATGGAAAAGAAAAC+CGG | 0.489124 | 3_3:+73067995 | None:intergenic |
CCAGTTGCAACCACGATTGT+CGG | 0.498957 | 3_3:-73069881 | Msa0470860:CDS |
CTTCGTTGTGCAAGTGATTG+TGG | 0.509528 | 3_3:+73068636 | None:intergenic |
GAACAGGATGGGGTGGCCGA+GGG | 0.510010 | 3_3:-73068146 | Msa0470860:intron |
AATCACTTGCACAACGAAGC+AGG | 0.517094 | 3_3:-73068632 | Msa0470860:CDS |
TACTGATAAAAGCATAATCC+TGG | 0.519988 | 3_3:+73069857 | None:intergenic |
AAAATTTAGCTCATTCCCTC+CGG | 0.520005 | 3_3:+73068066 | None:intergenic |
CATCACATTAATTCTATCAT+CGG | 0.528138 | 3_3:+73067944 | None:intergenic |
TGAATACAGCATTCTGGGCG+AGG | 0.532999 | 3_3:+73069827 | None:intergenic |
GCAACCACGATTGTCGGACC+AGG | 0.544517 | 3_3:-73069875 | Msa0470860:CDS |
CAAGTGATTGTGGTGCAACC+AGG | 0.558677 | 3_3:+73068646 | None:intergenic |
ATCACTTGCACAACGAAGCA+GGG | 0.575010 | 3_3:-73068631 | Msa0470860:CDS |
CATGGAAAAGAAAACCGGAA+TGG | 0.575984 | 3_3:+73068000 | None:intergenic |
AACTTCTGAACAGGATGGGG+TGG | 0.581840 | 3_3:-73068153 | Msa0470860:intron |
GATTGTGGTGCAACCAGGGA+CGG | 0.591641 | 3_3:+73068651 | None:intergenic |
CGGTTAGAGGAAGCATCAAG+AGG | 0.632608 | 3_3:+73068086 | None:intergenic |
TTGATGCTTCCTCTAACCGG+AGG | 0.635948 | 3_3:-73068082 | Msa0470860:CDS |
TGATGCTTCCTCTAACCGGA+GGG | 0.648380 | 3_3:-73068081 | Msa0470860:CDS |
TGATCAATCGAGATCAAACG+AGG | 0.656317 | 3_3:-73067979 | Msa0470860:CDS |
TAATCCTGGTCCGACAATCG+TGG | 0.664467 | 3_3:+73069871 | None:intergenic |
AAGTGATTGTGGTGCAACCA+GGG | 0.678211 | 3_3:+73068647 | None:intergenic |
GATCAATCGAGATCAAACGA+GGG | 0.743681 | 3_3:-73067978 | Msa0470860:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AACATCATTATATTATTTAT+TGG | - | chr3_3:73069018-73069037 | Msa0470860:intron | 10.0% |
!!! | CAGTAAATTTTAATTTAATT+TGG | + | chr3_3:73069295-73069314 | None:intergenic | 10.0% |
!! | AACATCATTATATTATTTAT+TGG | - | chr3_3:73069018-73069037 | Msa0470860:intron | 10.0% |
!!! | CAGTAAATTTTAATTTAATT+TGG | + | chr3_3:73069295-73069314 | None:intergenic | 10.0% |
!!! | TAATTTGTTTTATCCATAAA+AGG | - | chr3_3:73068901-73068920 | Msa0470860:intron | 15.0% |
!! | AAACCATAATTTAATATATG+TGG | - | chr3_3:73069626-73069645 | Msa0470860:intron | 15.0% |
!!! | TAATTTGTTTTATCCATAAA+AGG | - | chr3_3:73068901-73068920 | Msa0470860:intron | 15.0% |
!! | AAACCATAATTTAATATATG+TGG | - | chr3_3:73069626-73069645 | Msa0470860:intron | 15.0% |
!!! | ACATTTTACTTATGAAATCA+TGG | + | chr3_3:73068451-73068470 | None:intergenic | 20.0% |
!! | TTTCATAAGTAAAATGTCTT+TGG | - | chr3_3:73068454-73068473 | Msa0470860:intron | 20.0% |
!!! | TTTTTTTTGCTTGTATTTGA+CGG | + | chr3_3:73068500-73068519 | None:intergenic | 20.0% |
!! | CTTCACAATAAAATTTAAGA+TGG | + | chr3_3:73068523-73068542 | None:intergenic | 20.0% |
!! | AAGAACTAATAACTATAGTT+TGG | - | chr3_3:73068789-73068808 | Msa0470860:intron | 20.0% |
!!! | GGAGAATTTTATTGTTTAAT+TGG | - | chr3_3:73068968-73068987 | Msa0470860:intron | 20.0% |
!! | TTTATTGTTTAATTGGAATG+TGG | - | chr3_3:73068975-73068994 | Msa0470860:intron | 20.0% |
!!! | TACATGTACATTTTGATTAT+AGG | - | chr3_3:73069159-73069178 | Msa0470860:intron | 20.0% |
!! | ATGCCACATATATTAAATTA+TGG | + | chr3_3:73069632-73069651 | None:intergenic | 20.0% |
!! | TCGTTATTAATTCATAAATC+AGG | - | chr3_3:73069653-73069672 | Msa0470860:intron | 20.0% |
!! | TTATTAATTCATAAATCAGG+AGG | - | chr3_3:73069656-73069675 | Msa0470860:intron | 20.0% |
!!! | ACATTTTACTTATGAAATCA+TGG | + | chr3_3:73068451-73068470 | None:intergenic | 20.0% |
!! | TTTCATAAGTAAAATGTCTT+TGG | - | chr3_3:73068454-73068473 | Msa0470860:intron | 20.0% |
!!! | TTTTTTTTGCTTGTATTTGA+CGG | + | chr3_3:73068500-73068519 | None:intergenic | 20.0% |
!! | CTTCACAATAAAATTTAAGA+TGG | + | chr3_3:73068523-73068542 | None:intergenic | 20.0% |
!! | AAGAACTAATAACTATAGTT+TGG | - | chr3_3:73068789-73068808 | Msa0470860:intron | 20.0% |
!!! | GGAGAATTTTATTGTTTAAT+TGG | - | chr3_3:73068968-73068987 | Msa0470860:intron | 20.0% |
!! | TTTATTGTTTAATTGGAATG+TGG | - | chr3_3:73068975-73068994 | Msa0470860:intron | 20.0% |
!!! | TACATGTACATTTTGATTAT+AGG | - | chr3_3:73069159-73069178 | Msa0470860:intron | 20.0% |
!! | ATGCCACATATATTAAATTA+TGG | + | chr3_3:73069632-73069651 | None:intergenic | 20.0% |
!! | TCGTTATTAATTCATAAATC+AGG | - | chr3_3:73069653-73069672 | Msa0470860:intron | 20.0% |
!! | TTATTAATTCATAAATCAGG+AGG | - | chr3_3:73069656-73069675 | Msa0470860:intron | 20.0% |
! | TGTTACAGAAATTAGAATTG+AGG | + | chr3_3:73068120-73068139 | None:intergenic | 25.0% |
!! | ATAAACAATATCGACTATCA+AGG | - | chr3_3:73068249-73068268 | Msa0470860:intron | 25.0% |
!! | TAAACAATATCGACTATCAA+GGG | - | chr3_3:73068250-73068269 | Msa0470860:intron | 25.0% |
!!! | TTGTATGCATTTACTTTTGT+AGG | + | chr3_3:73068372-73068391 | None:intergenic | 25.0% |
!!! | ATACAAAAAAGTATCCATCA+AGG | - | chr3_3:73068386-73068405 | Msa0470860:intron | 25.0% |
! | AAATATCATGATTTCCTTGA+TGG | + | chr3_3:73068403-73068422 | None:intergenic | 25.0% |
! | TTGATATAGTAATTCGTCTT+GGG | + | chr3_3:73068610-73068629 | None:intergenic | 25.0% |
! | ATTGATATAGTAATTCGTCT+TGG | + | chr3_3:73068611-73068630 | None:intergenic | 25.0% |
! | TGTTAATGTTGTGTATAACT+CGG | - | chr3_3:73068663-73068682 | Msa0470860:intron | 25.0% |
! | CAATTACATCATTATGAGTT+TGG | + | chr3_3:73068728-73068747 | None:intergenic | 25.0% |
!! | TTAGCTTGACGTTAAATTAT+AGG | + | chr3_3:73068771-73068790 | None:intergenic | 25.0% |
!! | GTTTTATCCATAAAAGGAAT+TGG | - | chr3_3:73068907-73068926 | Msa0470860:intron | 25.0% |
!!! | ATGTACATTTTGATTATAGG+TGG | - | chr3_3:73069162-73069181 | Msa0470860:intron | 25.0% |
! | AATATAAGATGCAATATGAG+TGG | - | chr3_3:73069340-73069359 | Msa0470860:intron | 25.0% |
! | CTTACATAAACTAAAACAGA+AGG | - | chr3_3:73069545-73069564 | Msa0470860:intron | 25.0% |
!!! | GTACTTTATTTTTCCAAACA+TGG | - | chr3_3:73069716-73069735 | Msa0470860:intron | 25.0% |
! | TGTTACAGAAATTAGAATTG+AGG | + | chr3_3:73068120-73068139 | None:intergenic | 25.0% |
!! | ATAAACAATATCGACTATCA+AGG | - | chr3_3:73068249-73068268 | Msa0470860:intron | 25.0% |
!! | TAAACAATATCGACTATCAA+GGG | - | chr3_3:73068250-73068269 | Msa0470860:intron | 25.0% |
!!! | TTGTATGCATTTACTTTTGT+AGG | + | chr3_3:73068372-73068391 | None:intergenic | 25.0% |
!!! | ATACAAAAAAGTATCCATCA+AGG | - | chr3_3:73068386-73068405 | Msa0470860:intron | 25.0% |
! | AAATATCATGATTTCCTTGA+TGG | + | chr3_3:73068403-73068422 | None:intergenic | 25.0% |
! | TTGATATAGTAATTCGTCTT+GGG | + | chr3_3:73068610-73068629 | None:intergenic | 25.0% |
! | ATTGATATAGTAATTCGTCT+TGG | + | chr3_3:73068611-73068630 | None:intergenic | 25.0% |
! | TGTTAATGTTGTGTATAACT+CGG | - | chr3_3:73068663-73068682 | Msa0470860:intron | 25.0% |
! | CAATTACATCATTATGAGTT+TGG | + | chr3_3:73068728-73068747 | None:intergenic | 25.0% |
!! | TTAGCTTGACGTTAAATTAT+AGG | + | chr3_3:73068771-73068790 | None:intergenic | 25.0% |
!! | GTTTTATCCATAAAAGGAAT+TGG | - | chr3_3:73068907-73068926 | Msa0470860:intron | 25.0% |
!!! | ATGTACATTTTGATTATAGG+TGG | - | chr3_3:73069162-73069181 | Msa0470860:intron | 25.0% |
! | AATATAAGATGCAATATGAG+TGG | - | chr3_3:73069340-73069359 | Msa0470860:intron | 25.0% |
! | CTTACATAAACTAAAACAGA+AGG | - | chr3_3:73069545-73069564 | Msa0470860:intron | 25.0% |
!!! | GTACTTTATTTTTCCAAACA+TGG | - | chr3_3:73069716-73069735 | Msa0470860:intron | 25.0% |
! | TACTGATAAAAGCATAATCC+TGG | + | chr3_3:73067984-73068003 | None:intergenic | 30.0% |
TGACGTTAAATTATAGGACA+AGG | + | chr3_3:73068765-73068784 | None:intergenic | 30.0% | |
! | AAATCTAAAATGACAAAGCG+TGG | + | chr3_3:73068835-73068854 | None:intergenic | 30.0% |
! | ATCAAGTCCAATTCCTTTTA+TGG | + | chr3_3:73068917-73068936 | None:intergenic | 30.0% |
TTGCAATTACAGATAGTGTT+TGG | - | chr3_3:73068941-73068960 | Msa0470860:intron | 30.0% | |
AATGCATTCATTTATTGCCA+AGG | - | chr3_3:73069092-73069111 | Msa0470860:intron | 30.0% | |
ATGCATTCATTTATTGCCAA+GGG | - | chr3_3:73069093-73069112 | Msa0470860:intron | 30.0% | |
! | TTTATGTTCGTTGCAGTTTT+CGG | + | chr3_3:73069385-73069404 | None:intergenic | 30.0% |
AAAACTGCAACGAACATAAA+AGG | - | chr3_3:73069385-73069404 | Msa0470860:intron | 30.0% | |
! | CGAACATAAAAGGTATGTAT+AGG | - | chr3_3:73069395-73069414 | Msa0470860:intron | 30.0% |
! | CATAAAAGGTATGTATAGGA+AGG | - | chr3_3:73069399-73069418 | Msa0470860:intron | 30.0% |
TAGTTTATGTAAGAGTCTCA+CGG | + | chr3_3:73069538-73069557 | None:intergenic | 30.0% | |
TTGATCATGGAAAAGAAAAC+CGG | + | chr3_3:73069846-73069865 | None:intergenic | 30.0% | |
! | TACTGATAAAAGCATAATCC+TGG | + | chr3_3:73067984-73068003 | None:intergenic | 30.0% |
TGACGTTAAATTATAGGACA+AGG | + | chr3_3:73068765-73068784 | None:intergenic | 30.0% | |
! | AAATCTAAAATGACAAAGCG+TGG | + | chr3_3:73068835-73068854 | None:intergenic | 30.0% |
! | ATCAAGTCCAATTCCTTTTA+TGG | + | chr3_3:73068917-73068936 | None:intergenic | 30.0% |
TTGCAATTACAGATAGTGTT+TGG | - | chr3_3:73068941-73068960 | Msa0470860:intron | 30.0% | |
AATGCATTCATTTATTGCCA+AGG | - | chr3_3:73069092-73069111 | Msa0470860:intron | 30.0% | |
ATGCATTCATTTATTGCCAA+GGG | - | chr3_3:73069093-73069112 | Msa0470860:intron | 30.0% | |
! | TTTATGTTCGTTGCAGTTTT+CGG | + | chr3_3:73069385-73069404 | None:intergenic | 30.0% |
AAAACTGCAACGAACATAAA+AGG | - | chr3_3:73069385-73069404 | Msa0470860:intron | 30.0% | |
! | CGAACATAAAAGGTATGTAT+AGG | - | chr3_3:73069395-73069414 | Msa0470860:intron | 30.0% |
! | CATAAAAGGTATGTATAGGA+AGG | - | chr3_3:73069399-73069418 | Msa0470860:intron | 30.0% |
TAGTTTATGTAAGAGTCTCA+CGG | + | chr3_3:73069538-73069557 | None:intergenic | 30.0% | |
TTGATCATGGAAAAGAAAAC+CGG | + | chr3_3:73069846-73069865 | None:intergenic | 30.0% | |
TTCAGTGAATACAGCATTCT+GGG | + | chr3_3:73068019-73068038 | None:intergenic | 35.0% | |
TTCACTGAAGAAGCTACAAT+TGG | - | chr3_3:73068030-73068049 | Msa0470860:CDS | 35.0% | |
GAGCCAGGATAAATTATCAA+GGG | - | chr3_3:73068206-73068225 | Msa0470860:intron | 35.0% | |
GAAAAACATGCTTTGTAGAC+TGG | - | chr3_3:73068569-73068588 | Msa0470860:intron | 35.0% | |
ATTCATTTATTGCCAAGGGA+GGG | - | chr3_3:73069097-73069116 | Msa0470860:intron | 35.0% | |
AGTTCATAGTTCCACATAAG+TGG | - | chr3_3:73069257-73069276 | Msa0470860:intron | 35.0% | |
!! | TGTTTTTGTCACCACTTATG+TGG | + | chr3_3:73069271-73069290 | None:intergenic | 35.0% |
GGAAAAATAAAGTACACCCT+CGG | + | chr3_3:73069711-73069730 | None:intergenic | 35.0% | |
AGAATGTTCATGTCCATGTT+TGG | + | chr3_3:73069732-73069751 | None:intergenic | 35.0% | |
! | AAAATTTAGCTCATTCCCTC+CGG | + | chr3_3:73069775-73069794 | None:intergenic | 35.0% |
AAAGAAAACCGGAATGGAAA+CGG | + | chr3_3:73069835-73069854 | None:intergenic | 35.0% | |
TTCAGTGAATACAGCATTCT+GGG | + | chr3_3:73068019-73068038 | None:intergenic | 35.0% | |
TTCACTGAAGAAGCTACAAT+TGG | - | chr3_3:73068030-73068049 | Msa0470860:CDS | 35.0% | |
GAGCCAGGATAAATTATCAA+GGG | - | chr3_3:73068206-73068225 | Msa0470860:intron | 35.0% | |
GAAAAACATGCTTTGTAGAC+TGG | - | chr3_3:73068569-73068588 | Msa0470860:intron | 35.0% | |
ATTCATTTATTGCCAAGGGA+GGG | - | chr3_3:73069097-73069116 | Msa0470860:intron | 35.0% | |
AGTTCATAGTTCCACATAAG+TGG | - | chr3_3:73069257-73069276 | Msa0470860:intron | 35.0% | |
!! | TGTTTTTGTCACCACTTATG+TGG | + | chr3_3:73069271-73069290 | None:intergenic | 35.0% |
GGAAAAATAAAGTACACCCT+CGG | + | chr3_3:73069711-73069730 | None:intergenic | 35.0% | |
AGAATGTTCATGTCCATGTT+TGG | + | chr3_3:73069732-73069751 | None:intergenic | 35.0% | |
! | AAAATTTAGCTCATTCCCTC+CGG | + | chr3_3:73069775-73069794 | None:intergenic | 35.0% |
AAAGAAAACCGGAATGGAAA+CGG | + | chr3_3:73069835-73069854 | None:intergenic | 35.0% | |
CTTCAGTGAATACAGCATTC+TGG | + | chr3_3:73068020-73068039 | None:intergenic | 40.0% | |
TTCAACTTCGTGTTGTCTAG+AGG | + | chr3_3:73068061-73068080 | None:intergenic | 40.0% | |
GGAGCCAGGATAAATTATCA+AGG | - | chr3_3:73068205-73068224 | Msa0470860:intron | 40.0% | |
! | CCACCCTTGATAATTTATCC+TGG | + | chr3_3:73068212-73068231 | None:intergenic | 40.0% |
CCAGGATAAATTATCAAGGG+TGG | - | chr3_3:73068209-73068228 | Msa0470860:intron | 40.0% | |
! | ACAATATCGACTATCAAGGG+TGG | - | chr3_3:73068253-73068272 | Msa0470860:intron | 40.0% |
CAATGAAGCTTGTGAGAACA+AGG | + | chr3_3:73068546-73068565 | None:intergenic | 40.0% | |
CATGCTTTGTAGACTGGAAT+CGG | - | chr3_3:73068575-73068594 | Msa0470860:intron | 40.0% | |
TTACAGATAGTGTTTGGCAG+TGG | - | chr3_3:73068947-73068966 | Msa0470860:intron | 40.0% | |
CATTCATTTATTGCCAAGGG+AGG | - | chr3_3:73069096-73069115 | Msa0470860:intron | 40.0% | |
TTCATTTATTGCCAAGGGAG+GGG | - | chr3_3:73069098-73069117 | Msa0470860:intron | 40.0% | |
CATGGAAAAGAAAACCGGAA+TGG | + | chr3_3:73069841-73069860 | None:intergenic | 40.0% | |
CGTTTGATCTCGATTGATCA+TGG | + | chr3_3:73069859-73069878 | None:intergenic | 40.0% | |
TGATCAATCGAGATCAAACG+AGG | - | chr3_3:73069859-73069878 | Msa0470860:CDS | 40.0% | |
GATCAATCGAGATCAAACGA+GGG | - | chr3_3:73069860-73069879 | Msa0470860:CDS | 40.0% | |
CTTCAGTGAATACAGCATTC+TGG | + | chr3_3:73068020-73068039 | None:intergenic | 40.0% | |
TTCAACTTCGTGTTGTCTAG+AGG | + | chr3_3:73068061-73068080 | None:intergenic | 40.0% | |
GGAGCCAGGATAAATTATCA+AGG | - | chr3_3:73068205-73068224 | Msa0470860:intron | 40.0% | |
! | CCACCCTTGATAATTTATCC+TGG | + | chr3_3:73068212-73068231 | None:intergenic | 40.0% |
CCAGGATAAATTATCAAGGG+TGG | - | chr3_3:73068209-73068228 | Msa0470860:intron | 40.0% | |
! | ACAATATCGACTATCAAGGG+TGG | - | chr3_3:73068253-73068272 | Msa0470860:intron | 40.0% |
CAATGAAGCTTGTGAGAACA+AGG | + | chr3_3:73068546-73068565 | None:intergenic | 40.0% | |
CATGCTTTGTAGACTGGAAT+CGG | - | chr3_3:73068575-73068594 | Msa0470860:intron | 40.0% | |
TTACAGATAGTGTTTGGCAG+TGG | - | chr3_3:73068947-73068966 | Msa0470860:intron | 40.0% | |
CATTCATTTATTGCCAAGGG+AGG | - | chr3_3:73069096-73069115 | Msa0470860:intron | 40.0% | |
TTCATTTATTGCCAAGGGAG+GGG | - | chr3_3:73069098-73069117 | Msa0470860:intron | 40.0% | |
CATGGAAAAGAAAACCGGAA+TGG | + | chr3_3:73069841-73069860 | None:intergenic | 40.0% | |
CGTTTGATCTCGATTGATCA+TGG | + | chr3_3:73069859-73069878 | None:intergenic | 40.0% | |
TGATCAATCGAGATCAAACG+AGG | - | chr3_3:73069859-73069878 | Msa0470860:CDS | 40.0% | |
GATCAATCGAGATCAAACGA+GGG | - | chr3_3:73069860-73069879 | Msa0470860:CDS | 40.0% | |
GATGAGCCATGAAGAGACAT+GGG | + | chr3_3:73068098-73068117 | None:intergenic | 45.0% | |
ACCAATCATGCCCTAGTGAA+TGG | - | chr3_3:73068161-73068180 | Msa0470860:intron | 45.0% | |
TCCATTCACTAGGGCATGAT+TGG | + | chr3_3:73068165-73068184 | None:intergenic | 45.0% | |
AATCATGCCCTAGTGAATGG+AGG | - | chr3_3:73068164-73068183 | Msa0470860:intron | 45.0% | |
CAACGTACCTCCATTCACTA+GGG | + | chr3_3:73068174-73068193 | None:intergenic | 45.0% | |
GTTCTCACAAGCTTCATTGC+TGG | - | chr3_3:73068547-73068566 | Msa0470860:intron | 45.0% | |
AAGTGATTGTGGTGCAACCA+GGG | + | chr3_3:73069194-73069213 | None:intergenic | 45.0% | |
CTTCGTTGTGCAAGTGATTG+TGG | + | chr3_3:73069205-73069224 | None:intergenic | 45.0% | |
AATCACTTGCACAACGAAGC+AGG | - | chr3_3:73069206-73069225 | Msa0470860:intron | 45.0% | |
ATCACTTGCACAACGAAGCA+GGG | - | chr3_3:73069207-73069226 | Msa0470860:intron | 45.0% | |
TTTACTGTCTGTCTCGTTGC+AGG | - | chr3_3:73069308-73069327 | Msa0470860:intron | 45.0% | |
AGGATGCCTAACTTCTGAAC+AGG | - | chr3_3:73069676-73069695 | Msa0470860:intron | 45.0% | |
TGCCTAACTTCTGAACAGGA+TGG | - | chr3_3:73069680-73069699 | Msa0470860:intron | 45.0% | |
GCCTAACTTCTGAACAGGAT+GGG | - | chr3_3:73069681-73069700 | Msa0470860:intron | 45.0% | |
CCTAACTTCTGAACAGGATG+GGG | - | chr3_3:73069682-73069701 | Msa0470860:intron | 45.0% | |
CTCTTGATGCTTCCTCTAAC+CGG | - | chr3_3:73069753-73069772 | Msa0470860:intron | 45.0% | |
TGTCTGCTGCAGACTTAGAT+TGG | - | chr3_3:73069805-73069824 | Msa0470860:intron | 45.0% | |
GATGAGCCATGAAGAGACAT+GGG | + | chr3_3:73068098-73068117 | None:intergenic | 45.0% | |
ACCAATCATGCCCTAGTGAA+TGG | - | chr3_3:73068161-73068180 | Msa0470860:intron | 45.0% | |
TCCATTCACTAGGGCATGAT+TGG | + | chr3_3:73068165-73068184 | None:intergenic | 45.0% | |
AATCATGCCCTAGTGAATGG+AGG | - | chr3_3:73068164-73068183 | Msa0470860:intron | 45.0% | |
CAACGTACCTCCATTCACTA+GGG | + | chr3_3:73068174-73068193 | None:intergenic | 45.0% | |
GTTCTCACAAGCTTCATTGC+TGG | - | chr3_3:73068547-73068566 | Msa0470860:intron | 45.0% | |
AAGTGATTGTGGTGCAACCA+GGG | + | chr3_3:73069194-73069213 | None:intergenic | 45.0% | |
CTTCGTTGTGCAAGTGATTG+TGG | + | chr3_3:73069205-73069224 | None:intergenic | 45.0% | |
AATCACTTGCACAACGAAGC+AGG | - | chr3_3:73069206-73069225 | Msa0470860:intron | 45.0% | |
ATCACTTGCACAACGAAGCA+GGG | - | chr3_3:73069207-73069226 | Msa0470860:intron | 45.0% | |
TTTACTGTCTGTCTCGTTGC+AGG | - | chr3_3:73069308-73069327 | Msa0470860:intron | 45.0% | |
AGGATGCCTAACTTCTGAAC+AGG | - | chr3_3:73069676-73069695 | Msa0470860:intron | 45.0% | |
TGCCTAACTTCTGAACAGGA+TGG | - | chr3_3:73069680-73069699 | Msa0470860:intron | 45.0% | |
GCCTAACTTCTGAACAGGAT+GGG | - | chr3_3:73069681-73069700 | Msa0470860:intron | 45.0% | |
CCTAACTTCTGAACAGGATG+GGG | - | chr3_3:73069682-73069701 | Msa0470860:intron | 45.0% | |
CTCTTGATGCTTCCTCTAAC+CGG | - | chr3_3:73069753-73069772 | Msa0470860:intron | 45.0% | |
TGTCTGCTGCAGACTTAGAT+TGG | - | chr3_3:73069805-73069824 | Msa0470860:intron | 45.0% | |
!! | TGTATATTATAAAAATAAAA+AGG | - | chr3_3:73069062-73069081 | Msa0470860:intron | 5.0% |
!! | TGTATATTATAAAAATAAAA+AGG | - | chr3_3:73069062-73069081 | Msa0470860:intron | 5.0% |
CCAGTTGCAACCACGATTGT+CGG | - | chr3_3:73067957-73067976 | Msa0470860:CDS | 50.0% | |
TAATCCTGGTCCGACAATCG+TGG | + | chr3_3:73067970-73067989 | None:intergenic | 50.0% | |
TGAATACAGCATTCTGGGCG+AGG | + | chr3_3:73068014-73068033 | None:intergenic | 50.0% | |
AAGAGACATGGGATGCGACA+CGG | + | chr3_3:73068087-73068106 | None:intergenic | 50.0% | |
TCGCATCCCATGTCTCTTCA+TGG | - | chr3_3:73068089-73068108 | Msa0470860:CDS | 50.0% | |
GGATGAGCCATGAAGAGACA+TGG | + | chr3_3:73068099-73068118 | None:intergenic | 50.0% | |
GCAACGTACCTCCATTCACT+AGG | + | chr3_3:73068175-73068194 | None:intergenic | 50.0% | |
TTTATCCTGGCTCCATCCCT+GGG | + | chr3_3:73068199-73068218 | None:intergenic | 50.0% | |
ATTTATCCTGGCTCCATCCC+TGG | + | chr3_3:73068200-73068219 | None:intergenic | 50.0% | |
TGGCTGCAGAGTCATGTTTG+TGG | + | chr3_3:73068815-73068834 | None:intergenic | 50.0% | |
ATTTATTGCCAAGGGAGGGG+TGG | - | chr3_3:73069101-73069120 | Msa0470860:intron | 50.0% | |
CAAGTGATTGTGGTGCAACC+AGG | + | chr3_3:73069195-73069214 | None:intergenic | 50.0% | |
CCCCATCCTGTTCAGAAGTT+AGG | + | chr3_3:73069685-73069704 | None:intergenic | 50.0% | |
AACTTCTGAACAGGATGGGG+TGG | - | chr3_3:73069685-73069704 | Msa0470860:intron | 50.0% | |
!! | CGGTTAGAGGAAGCATCAAG+AGG | + | chr3_3:73069755-73069774 | None:intergenic | 50.0% |
TTGATGCTTCCTCTAACCGG+AGG | - | chr3_3:73069756-73069775 | Msa0470860:intron | 50.0% | |
TGATGCTTCCTCTAACCGGA+GGG | - | chr3_3:73069757-73069776 | Msa0470860:intron | 50.0% | |
CCAGTTGCAACCACGATTGT+CGG | - | chr3_3:73067957-73067976 | Msa0470860:CDS | 50.0% | |
TAATCCTGGTCCGACAATCG+TGG | + | chr3_3:73067970-73067989 | None:intergenic | 50.0% | |
TGAATACAGCATTCTGGGCG+AGG | + | chr3_3:73068014-73068033 | None:intergenic | 50.0% | |
AAGAGACATGGGATGCGACA+CGG | + | chr3_3:73068087-73068106 | None:intergenic | 50.0% | |
TCGCATCCCATGTCTCTTCA+TGG | - | chr3_3:73068089-73068108 | Msa0470860:CDS | 50.0% | |
GGATGAGCCATGAAGAGACA+TGG | + | chr3_3:73068099-73068118 | None:intergenic | 50.0% | |
GCAACGTACCTCCATTCACT+AGG | + | chr3_3:73068175-73068194 | None:intergenic | 50.0% | |
TTTATCCTGGCTCCATCCCT+GGG | + | chr3_3:73068199-73068218 | None:intergenic | 50.0% | |
ATTTATCCTGGCTCCATCCC+TGG | + | chr3_3:73068200-73068219 | None:intergenic | 50.0% | |
TGGCTGCAGAGTCATGTTTG+TGG | + | chr3_3:73068815-73068834 | None:intergenic | 50.0% | |
ATTTATTGCCAAGGGAGGGG+TGG | - | chr3_3:73069101-73069120 | Msa0470860:intron | 50.0% | |
CAAGTGATTGTGGTGCAACC+AGG | + | chr3_3:73069195-73069214 | None:intergenic | 50.0% | |
CCCCATCCTGTTCAGAAGTT+AGG | + | chr3_3:73069685-73069704 | None:intergenic | 50.0% | |
AACTTCTGAACAGGATGGGG+TGG | - | chr3_3:73069685-73069704 | Msa0470860:intron | 50.0% | |
!! | CGGTTAGAGGAAGCATCAAG+AGG | + | chr3_3:73069755-73069774 | None:intergenic | 50.0% |
TTGATGCTTCCTCTAACCGG+AGG | - | chr3_3:73069756-73069775 | Msa0470860:intron | 50.0% | |
TGATGCTTCCTCTAACCGGA+GGG | - | chr3_3:73069757-73069776 | Msa0470860:intron | 50.0% | |
CCGACAATCGTGGTTGCAAC+TGG | + | chr3_3:73067960-73067979 | None:intergenic | 55.0% | |
AGAGACATGGGATGCGACAC+GGG | + | chr3_3:73068086-73068105 | None:intergenic | 55.0% | |
! | AATGGAGGTACGTTGCACCC+AGG | - | chr3_3:73068179-73068198 | Msa0470860:intron | 55.0% |
! | ATGGAGGTACGTTGCACCCA+GGG | - | chr3_3:73068180-73068199 | Msa0470860:intron | 55.0% |
ATTATAGGTGGCTCCGTCCC+TGG | - | chr3_3:73069174-73069193 | Msa0470860:intron | 55.0% | |
GATTGTGGTGCAACCAGGGA+CGG | + | chr3_3:73069190-73069209 | None:intergenic | 55.0% | |
AGCTCATTCCCTCCGGTTAG+AGG | + | chr3_3:73069768-73069787 | None:intergenic | 55.0% | |
TTGGTGCGCCGTTTCCATTC+CGG | - | chr3_3:73069824-73069843 | Msa0470860:intron | 55.0% | |
CCGACAATCGTGGTTGCAAC+TGG | + | chr3_3:73067960-73067979 | None:intergenic | 55.0% | |
AGAGACATGGGATGCGACAC+GGG | + | chr3_3:73068086-73068105 | None:intergenic | 55.0% | |
! | AATGGAGGTACGTTGCACCC+AGG | - | chr3_3:73068179-73068198 | Msa0470860:intron | 55.0% |
! | ATGGAGGTACGTTGCACCCA+GGG | - | chr3_3:73068180-73068199 | Msa0470860:intron | 55.0% |
ATTATAGGTGGCTCCGTCCC+TGG | - | chr3_3:73069174-73069193 | Msa0470860:intron | 55.0% | |
GATTGTGGTGCAACCAGGGA+CGG | + | chr3_3:73069190-73069209 | None:intergenic | 55.0% | |
AGCTCATTCCCTCCGGTTAG+AGG | + | chr3_3:73069768-73069787 | None:intergenic | 55.0% | |
TTGGTGCGCCGTTTCCATTC+CGG | - | chr3_3:73069824-73069843 | Msa0470860:intron | 55.0% | |
GCAACCACGATTGTCGGACC+AGG | - | chr3_3:73067963-73067982 | Msa0470860:CDS | 60.0% | |
AGGTACGTTGCACCCAGGGA+TGG | - | chr3_3:73068184-73068203 | Msa0470860:intron | 60.0% | |
AATGATCGCCACCCCTCCCT+TGG | + | chr3_3:73069112-73069131 | None:intergenic | 60.0% | |
GCAACCACGATTGTCGGACC+AGG | - | chr3_3:73067963-73067982 | Msa0470860:CDS | 60.0% | |
AGGTACGTTGCACCCAGGGA+TGG | - | chr3_3:73068184-73068203 | Msa0470860:intron | 60.0% | |
AATGATCGCCACCCCTCCCT+TGG | + | chr3_3:73069112-73069131 | None:intergenic | 60.0% | |
TTGCACCCAGGGATGGAGCC+AGG | - | chr3_3:73068191-73068210 | Msa0470860:intron | 65.0% | |
TGAACAGGATGGGGTGGCCG+AGG | - | chr3_3:73069691-73069710 | Msa0470860:intron | 65.0% | |
GAACAGGATGGGGTGGCCGA+GGG | - | chr3_3:73069692-73069711 | Msa0470860:intron | 65.0% | |
TTGCACCCAGGGATGGAGCC+AGG | - | chr3_3:73068191-73068210 | Msa0470860:intron | 65.0% | |
TGAACAGGATGGGGTGGCCG+AGG | - | chr3_3:73069691-73069710 | Msa0470860:intron | 65.0% | |
GAACAGGATGGGGTGGCCGA+GGG | - | chr3_3:73069692-73069711 | Msa0470860:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr3_3 | gene | 73067946 | 73069914 | 73067946 | ID=Msa0470860;Name=Msa0470860 |
chr3_3 | mRNA | 73067946 | 73069914 | 73067946 | ID=Msa0470860-mRNA-1;Parent=Msa0470860;Name=Msa0470860-mRNA-1;_AED=0.46;_eAED=0.46;_QI=0|0|0|1|0|0|3|0|124 |
chr3_3 | exon | 73069834 | 73069914 | 73069834 | ID=Msa0470860-mRNA-1:exon:18462;Parent=Msa0470860-mRNA-1 |
chr3_3 | exon | 73068603 | 73068679 | 73068603 | ID=Msa0470860-mRNA-1:exon:18461;Parent=Msa0470860-mRNA-1 |
chr3_3 | exon | 73067946 | 73068162 | 73067946 | ID=Msa0470860-mRNA-1:exon:18460;Parent=Msa0470860-mRNA-1 |
chr3_3 | CDS | 73069834 | 73069914 | 73069834 | ID=Msa0470860-mRNA-1:cds;Parent=Msa0470860-mRNA-1 |
chr3_3 | CDS | 73068603 | 73068679 | 73068603 | ID=Msa0470860-mRNA-1:cds;Parent=Msa0470860-mRNA-1 |
chr3_3 | CDS | 73067946 | 73068162 | 73067946 | ID=Msa0470860-mRNA-1:cds;Parent=Msa0470860-mRNA-1 |
Gene Sequence |
Protein sequence |