AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1001770

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001770 MtrunA17_Chr6g0488881 97.160 669 19 0 1 669 1 669 0.0 1367
Msa1001770 MtrunA17_Chr4g0000131 61.589 755 287 2 1 752 1 755 0.0 1012
Msa1001770 MtrunA17_Chr4g0020031 59.788 756 300 3 1 752 1 756 0.0 990
Msa1001770 MtrunA17_Chr7g0228111 59.656 756 301 3 1 752 1 756 0.0 979
Msa1001770 MtrunA17_Chr5g0396321 60.530 755 295 3 1 753 1 754 0.0 962
Msa1001770 MtrunA17_Chr6g0488821 57.366 767 312 7 1 753 1 766 0.0 929
Msa1001770 MtrunA17_Chr3g0090601 56.259 695 261 4 59 752 34 686 0.0 820
Msa1001770 MtrunA17_Chr8g0342291 59.008 605 239 2 154 757 7 603 0.0 801
Msa1001770 MtrunA17_Chr4g0000191 63.400 500 182 1 254 752 1 500 0.0 694
Msa1001770 MtrunA17_Chr8g0342311 60.196 510 202 1 249 757 11 520 0.0 686
Msa1001770 MtrunA17_Chr7g0238841 56.055 512 213 3 254 753 1 512 0.0 623
Msa1001770 MtrunA17_Chr6g0463651 79.920 249 50 0 488 736 1 249 1.52e-146 429
Msa1001770 MtrunA17_Chr8g0342271 59.259 297 120 1 154 449 15 311 1.65e-137 409
Msa1001770 MtrunA17_Chr6g0463701 74.074 216 56 0 307 522 12 227 2.19e-118 357
Msa1001770 MtrunA17_Chr6g0486411 56.579 304 110 3 452 753 2 285 1.17e-113 345
Msa1001770 MtrunA17_Chr6g0463661 75.294 170 42 0 320 489 1 170 3.36e-93 288
Msa1001770 MtrunA17_Chr7g0238831 50.890 281 124 4 1 269 1 279 8.47e-91 286
Msa1001770 MtrunA17_Chr6g0463721 82.166 157 28 0 1 157 1 157 6.14e-85 267
Msa1001770 MtrunA17_Chr8g0342251 53.659 205 89 1 521 719 1 205 2.85e-77 248
Msa1001770 MtrunA17_Chr6g0486401 54.067 209 94 2 254 460 1 209 8.50e-77 246
Msa1001770 MtrunA17_Chr4g0000181 54.315 197 90 0 64 260 1 197 7.88e-76 243
Msa1001770 MtrunA17_Chr8g0342321 50.532 188 93 0 65 252 3 190 8.05e-68 222
Msa1001770 MtrunA17_Chr6g0486391 55.621 169 74 1 90 258 4 171 4.09e-65 214
Msa1001770 MtrunA17_Chr6g0463691 83.333 120 20 0 606 725 8 127 4.72e-64 209
Msa1001770 MtrunA17_Chr8g0342241 51.685 178 81 1 488 665 2 174 4.27e-57 192
Msa1001770 MtrunA17_Chr8g0342301 50.314 159 77 1 1 157 1 159 4.92e-48 167
Msa1001770 MtrunA17_Chr6g0488871 96.667 60 2 0 703 762 1 60 8.77e-35 126
Msa1001770 MtrunA17_Chr8g0342281 47.015 134 69 1 1 132 1 134 1.98e-34 128
Msa1001770 MtrunA17_Chr6g0463671 83.051 59 10 0 254 312 1 59 2.36e-30 113
Msa1001770 MtrunA17_Chr6g0463711 83.333 54 9 0 254 307 1 54 1.51e-25 100
Msa1001770 MtrunA17_Chr8g0342261 63.793 58 21 0 448 505 31 88 6.78e-21 89.0
Msa1001770 MtrunA17_Chr8g0342331 57.353 68 27 1 1 66 1 68 8.53e-20 84.3
Msa1001770 MtrunA17_Chr6g0486381 56.944 72 27 2 1 68 1 72 1.44e-18 80.9
Msa1001770 MtrunA17_Chr3g0090611 45.679 81 42 1 1 79 1 81 2.28e-17 77.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1001770 AT2G07050.1 60.950 758 293 3 1 756 1 757 0.0 1004
Msa1001770 AT1G78960.2 58.289 760 313 3 1 756 1 760 0.0 961
Msa1001770 AT1G78960.1 58.289 760 313 3 1 756 1 760 0.0 961
Msa1001770 AT1G78960.3 58.289 760 313 3 1 756 1 760 0.0 961
Msa1001770 AT1G78955.1 59.656 756 301 2 1 752 1 756 0.0 961
Msa1001770 AT1G78950.2 58.598 756 309 2 1 752 10 765 0.0 952
Msa1001770 AT1G78950.1 58.598 756 309 2 1 752 1 756 0.0 952
Msa1001770 AT1G78960.4 58.368 723 297 3 1 719 1 723 0.0 914
Msa1001770 AT1G78970.1 57.199 757 317 4 1 753 1 754 0.0 912
Msa1001770 AT1G78970.2 57.199 757 317 4 1 753 1 754 0.0 912
Msa1001770 AT1G78970.3 57.199 757 317 4 1 753 1 754 0.0 912
Msa1001770 AT1G66960.3 55.644 753 330 2 1 749 1 753 0.0 909
Msa1001770 AT1G66960.1 55.644 753 330 2 1 749 1 753 0.0 909
Msa1001770 AT1G66960.4 55.644 753 330 2 1 749 1 753 0.0 909
Msa1001770 AT1G66960.2 55.644 753 330 2 1 749 10 762 0.0 909
Msa1001770 AT2G07050.2 62.048 664 250 2 94 756 4 666 0.0 904
Msa1001770 AT1G78955.4 59.855 690 276 1 64 752 2 691 0.0 888
Msa1001770 AT3G45130.4 57.784 758 313 5 1 754 1 755 0.0 857
Msa1001770 AT3G45130.1 57.784 758 313 5 1 754 1 755 0.0 857
Msa1001770 AT3G45130.5 57.784 758 313 5 1 754 1 755 0.0 857
Msa1001770 AT3G45130.2 57.784 758 313 5 1 754 1 755 0.0 857
Msa1001770 AT3G45130.3 57.784 758 313 5 1 754 1 755 0.0 857
Msa1001770 AT1G78955.2 59.209 657 267 1 64 719 2 658 0.0 832
Msa1001770 AT1G78960.5 60.099 609 242 1 149 756 1 609 0.0 812
Msa1001770 AT1G78500.2 51.187 758 360 5 1 748 1 758 0.0 805
Msa1001770 AT1G78500.1 51.187 758 360 5 1 748 1 758 0.0 805
Msa1001770 AT5G36150.1 49.603 756 377 3 1 752 1 756 0.0 804
Msa1001770 AT5G36150.2 49.603 756 377 3 1 752 1 756 0.0 804
Msa1001770 AT4G15370.2 49.339 756 368 5 1 748 1 749 0.0 784
Msa1001770 AT4G15370.1 49.144 759 368 6 1 748 1 752 0.0 780
Msa1001770 AT5G48010.2 48.489 761 379 6 1 750 1 759 0.0 779
Msa1001770 AT4G15340.1 49.020 765 381 5 1 756 1 765 0.0 778
Msa1001770 AT5G42600.1 48.473 753 382 4 1 748 1 752 0.0 764
Msa1001770 AT1G78955.5 61.446 581 223 1 173 752 1 581 0.0 764
Msa1001770 AT1G78955.3 59.038 603 246 1 64 665 2 604 0.0 761
Msa1001770 AT5G48010.1 47.700 761 377 7 1 750 1 751 0.0 757
Msa1001770 AT3G29255.1 45.080 752 349 7 2 748 6 698 0.0 675
Msa1001770 AT4G15340.2 48.537 581 290 5 1 572 1 581 0.0 577
Msa1001770 AT1G78480.1 34.615 156 87 5 49 197 29 176 1.84e-18 85.1

Find 229 sgRNAs with CRISPR-Local

Find 628 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
ATATATATGTTGAGATAATT+TGG 0.169555 6_4:+85649249 None:intergenic
AATTTGCACGGTTGTCTTCT+AGG 0.195387 6_4:+85639824 None:intergenic
TGGGCTTTGTTGTCCCTTAT+CGG 0.261922 6_4:-85639787 Msa1001770:CDS
ATCCACTTCCACCAGAATTC+TGG 0.268631 6_4:-85642227 Msa1001770:CDS
CTCACTACCCAGGTGCTAAT+TGG 0.269588 6_4:-85639322 Msa1001770:three_prime_UTR
ATGCCCATGTCATATCTATA+TGG 0.269795 6_4:-85642044 Msa1001770:CDS
AGGTGTCGTTAATATTATTA+AGG 0.272115 6_4:-85649288 Msa1001770:five_prime_UTR
TTCCATCATGGGGAAAGTTC+TGG 0.280761 6_4:-85642380 Msa1001770:CDS
CCCGAATCCCTGATTACTTC+TGG 0.281207 6_4:-85641531 Msa1001770:CDS
CAACTACCTGTGAGGCCTTC+AGG 0.291777 6_4:+85641027 None:intergenic
GCCTTGTCTTCACCATCTTC+AGG 0.293538 6_4:+85642453 None:intergenic
CTTCTCTCAGTGATTTGATT+AGG 0.298981 6_4:+85641994 None:intergenic
GGATGAATAGGGGTGAATTT+TGG 0.300808 6_4:+85642198 None:intergenic
AGTTTAACTGCTGGTGGAAT+GGG 0.308591 6_4:+85644383 None:intergenic
TTTGGTAGAAACCAGAATTC+TGG 0.308766 6_4:+85642216 None:intergenic
CAATGGAGAGATGCAGAAAT+TGG 0.310238 6_4:-85642431 Msa1001770:CDS
ATAATATATATACCTTGTTT+TGG 0.312394 6_4:+85639917 None:intergenic
AGAGAAGAAGATATCATAAC+AGG 0.329769 6_4:-85644359 Msa1001770:CDS
TTGTGCTATGACCCTCTATA+TGG 0.332950 6_4:+85642526 None:intergenic
TAACTTCATTCCACGGTGTA+TGG 0.336068 6_4:+85639629 None:intergenic
TCTTGTGGTGTTCCTGCATT+TGG 0.337805 6_4:+85649113 None:intergenic
AGGTATGCACCTGGATGAAT+AGG 0.345041 6_4:+85642186 None:intergenic
GTAATGGCCCTCTATGTTAC+AGG 0.353508 6_4:-85644014 Msa1001770:CDS
TTCGATATGATGAGTAGTTC+AGG 0.355276 6_4:+85639432 None:intergenic
GAGGTCAGAACTTTGTTTGA+TGG 0.356213 6_4:+85649040 None:intergenic
CATAACATATCTTGAATCAT+AGG 0.357423 6_4:+85641763 None:intergenic
TTCAATGAAATGAATTGCTT+TGG 0.360615 6_4:+85640272 None:intergenic
ACAATTCAAGGTGCAGCATT+TGG 0.361763 6_4:+85639350 None:intergenic
ACTCCACAGGTACGGCTGTT+GGG 0.364012 6_4:-85640094 Msa1001770:intron
CTATGATTCAAGATATGTTA+TGG 0.368024 6_4:-85641762 Msa1001770:CDS
AGTTTGTATGCCTCTGAGTT+CGG 0.368801 6_4:+85641562 None:intergenic
AAATTCTTACAGTTGGTTAG+AGG 0.371127 6_4:-85640652 Msa1001770:intron
GTTTGTATGCCTCTGAGTTC+GGG 0.373213 6_4:+85641563 None:intergenic
CCTTGACCATGGTGGTTTAG+TGG 0.374435 6_4:-85642406 Msa1001770:CDS
TTCCAGTTGATTTGATCATA+AGG 0.375182 6_4:+85641957 None:intergenic
AACCTTAGCAATAGTATTCC+GGG 0.376806 6_4:+85641929 None:intergenic
GGATCCCTTGATGAGGTTCT+AGG 0.377958 6_4:-85643993 Msa1001770:CDS
GCCAGAAGTAATCAGGGATT+CGG 0.379265 6_4:+85641530 None:intergenic
TCTGCAAGCCAGAAGTAATC+AGG 0.379292 6_4:+85641523 None:intergenic
CAGTTTAACTGCTGGTGGAA+TGG 0.379805 6_4:+85644382 None:intergenic
TTGTCAAAGCAGCTTCCTAA+TGG 0.380943 6_4:-85639967 Msa1001770:CDS
CTGCCAGAAAATACAAAATT+CGG 0.382313 6_4:+85639255 None:intergenic
ATTTCTGTGAATAACTTCAT+AGG 0.384332 6_4:-85649158 Msa1001770:CDS
ATCGAAACATCTTTCCCATA+TGG 0.386037 6_4:-85639415 Msa1001770:CDS
TTGTTGTCCCTTATCGGTGC+AGG 0.386134 6_4:-85639781 Msa1001770:CDS
TGTCAAAGCAGCTTCCTAAT+GGG 0.387123 6_4:-85639966 Msa1001770:CDS
AATAATGAATGCAGAGCTTT+GGG 0.387482 6_4:-85641145 Msa1001770:intron
TATATATTGCCTTTCTGAAA+AGG 0.390011 6_4:+85639125 None:intergenic
AACCTTATGATCAAATCAAC+TGG 0.400633 6_4:-85641959 Msa1001770:CDS
TTTCCTTAGCTCTATGAGTT+GGG 0.400737 6_4:+85640310 None:intergenic
TAATAATGAATGCAGAGCTT+TGG 0.407402 6_4:-85641146 Msa1001770:intron
TAATGGCGGGTTCCCTGCTT+GGG 0.410324 6_4:-85640682 Msa1001770:CDS
TATGATTCAAGATATGTTAT+GGG 0.411393 6_4:-85641761 Msa1001770:CDS
ATACTCTCCCAGAGCCCATA+TGG 0.417018 6_4:+85639400 None:intergenic
GGTATGCACCTGGATGAATA+GGG 0.417291 6_4:+85642187 None:intergenic
GAGGGTCATAGCACAATGTT+TGG 0.419263 6_4:-85642519 Msa1001770:CDS
CATCTTTCCCATATGGGCTC+TGG 0.420694 6_4:-85639408 Msa1001770:CDS
GTAGCTTTGTGAAGAGATAC+AGG 0.421470 6_4:+85640334 None:intergenic
GATTTGATTAGGTCAGTGAT+AGG 0.421520 6_4:+85642005 None:intergenic
CACTGGCCTGCAGAATCTGC+TGG 0.422487 6_4:-85644269 Msa1001770:CDS
TCTTCTCTCAGTTTAACTGC+TGG 0.428487 6_4:+85644374 None:intergenic
TACTTCTGGCTTGCAGAAGA+TGG 0.431129 6_4:-85641517 Msa1001770:CDS
AAACCTTAGCAATAGTATTC+CGG 0.434367 6_4:+85641928 None:intergenic
TCTCTCAGTTTAACTGCTGG+TGG 0.434390 6_4:+85644377 None:intergenic
ATTTCCTTAGCTCTATGAGT+TGG 0.436325 6_4:+85640309 None:intergenic
AACCTGCCCTGCACCGATAA+GGG 0.436795 6_4:+85639774 None:intergenic
TCCATCATGGGGAAAGTTCT+GGG 0.438199 6_4:-85642379 Msa1001770:CDS
TAACCTGCCCTGCACCGATA+AGG 0.438248 6_4:+85639773 None:intergenic
TTGAAGACACACTGATTGAG+AGG 0.442774 6_4:-85640505 Msa1001770:CDS
CCAGAAGTAATCAGGGATTC+GGG 0.443793 6_4:+85641531 None:intergenic
ATGCAACTACAGGAGATAAC+AGG 0.444350 6_4:-85639476 Msa1001770:intron
GTTTAGTGGCTATTCCATCA+TGG 0.446920 6_4:-85642392 Msa1001770:CDS
TAATGCCTTCTGTCTAAGCT+TGG 0.447789 6_4:+85641690 None:intergenic
AAGATAGCAGAAGGAGGAGA+AGG 0.447791 6_4:-85649185 Msa1001770:CDS
CAAATTTAGTTCAAACTTCG+TGG 0.454847 6_4:-85639807 Msa1001770:CDS
ATAGAATACCAGGATCCATC+AGG 0.456520 6_4:+85640237 None:intergenic
GTAATGGCGGGTTCCCTGCT+TGG 0.457885 6_4:-85640683 Msa1001770:CDS
AAAATGCCAACTGATCTTGT+TGG 0.460164 6_4:-85640768 Msa1001770:CDS
ATTATGTTTGATAGCGCGTT+GGG 0.462799 6_4:-85641593 Msa1001770:CDS
AGCCTCAAAATTCTTACAGT+TGG 0.465115 6_4:-85640659 Msa1001770:CDS
AACCAGAATTCTGGTGGAAG+TGG 0.466445 6_4:+85642225 None:intergenic
TCGAAACATCTTTCCCATAT+GGG 0.466714 6_4:-85639414 Msa1001770:CDS
TACTCCACAGGTACGGCTGT+TGG 0.468900 6_4:-85640095 Msa1001770:intron
TGGCACTTGGTTTGCTGTAG+AGG 0.475158 6_4:-85640055 Msa1001770:CDS
TGCCCATGTCATATCTATAT+GGG 0.475927 6_4:-85642043 Msa1001770:CDS
AGATGGAGATTTCCCACAAC+AGG 0.476470 6_4:-85639586 Msa1001770:intron
CACAAAACCCTGATGGATCC+TGG 0.477094 6_4:-85640245 Msa1001770:intron
AACAGTAGATACCTTTGCAT+TGG 0.479394 6_4:-85641631 Msa1001770:CDS
AACATAAGAAGGAAATTGTT+CGG 0.480544 6_4:-85643965 Msa1001770:CDS
TCAATCTCAGCATGTTCTTG+TGG 0.480961 6_4:+85649098 None:intergenic
ATCAATTCACAGATGGAAGA+TGG 0.483390 6_4:-85639603 Msa1001770:CDS
ACCCAGAACTTTCCCCATGA+TGG 0.487722 6_4:+85642378 None:intergenic
GGCACTTGGTTTGCTGTAGA+GGG 0.487793 6_4:-85640054 Msa1001770:CDS
ATCTTTCCCATATGGGCTCT+GGG 0.491199 6_4:-85639407 Msa1001770:CDS
ATGGGGATTTCTTTATCATG+TGG 0.493396 6_4:-85641743 Msa1001770:CDS
ACTTCATAGGACGTCAACAC+TGG 0.494111 6_4:-85649145 Msa1001770:CDS
GTCCCTTATCGGTGCAGGGC+AGG 0.495376 6_4:-85639776 Msa1001770:intron
ACAATTTCCTTCTTATGTTG+AGG 0.498096 6_4:+85643969 None:intergenic
AATAGGTATGTTGAGTGCAC+TGG 0.502674 6_4:-85640372 Msa1001770:intron
CGCTACAGAGCAGTAATGGC+GGG 0.502708 6_4:-85640695 Msa1001770:CDS
CTCTCGCTACAGAGCAGTAA+TGG 0.505047 6_4:-85640699 Msa1001770:CDS
CATTGATTACAACAATAAGA+AGG 0.505283 6_4:-85644331 Msa1001770:CDS
TCTAGGACCTCAACATAAGA+AGG 0.512830 6_4:-85643976 Msa1001770:CDS
TGAAATGAATTGCTTTGGAA+AGG 0.513073 6_4:+85640277 None:intergenic
TTTAGTGGCTATTCCATCAT+GGG 0.514005 6_4:-85642391 Msa1001770:CDS
TCACGCTATATATAGGTACT+TGG 0.516796 6_4:-85642273 Msa1001770:intron
TAGTGAGTAGTTACAATTCA+AGG 0.517855 6_4:+85639338 None:intergenic
GTGTCTTCAAAGAATTCAGT+TGG 0.517960 6_4:+85640518 None:intergenic
AGATAGCAGAAGGAGGAGAA+GGG 0.517972 6_4:-85649184 Msa1001770:CDS
GAATTTGTGCAGACAAGACT+CGG 0.520633 6_4:+85639372 None:intergenic
AAAGGCCAGCAATTCAGAAA+AGG 0.520870 6_4:+85641715 None:intergenic
CTCCACAGGTACGGCTGTTG+GGG 0.523437 6_4:-85640093 Msa1001770:intron
GACAGAACGAAGATGGTGGA+TGG 0.523858 6_4:-85642554 Msa1001770:intron
ATATCTTGAATCATAGGATG+TGG 0.524227 6_4:+85641769 None:intergenic
TTCAAGCTCATGATGGCCAC+TGG 0.530366 6_4:-85644286 Msa1001770:CDS
GTCTCTGACTGCACCGCAGA+AGG 0.530369 6_4:-85640918 Msa1001770:CDS
CTACACTAATTACCTGTTGT+GGG 0.532832 6_4:+85639574 None:intergenic
ACAGAACGAAGATGGTGGAT+GGG 0.533685 6_4:-85642553 Msa1001770:intron
GCTACACTAATTACCTGTTG+TGG 0.534062 6_4:+85639573 None:intergenic
TATATTGCACTGAGGCTGCT+TGG 0.534774 6_4:-85642483 Msa1001770:CDS
TCTATATGGGAAGAAGTTTG+TGG 0.537189 6_4:-85642030 Msa1001770:CDS
AAATCAACTGGAACAAAGCC+CGG 0.537569 6_4:-85641947 Msa1001770:CDS
TCGATATGATGAGTAGTTCA+GGG 0.538351 6_4:+85639433 None:intergenic
TTTGCAAGGAAGGACTGTTA+CGG 0.538358 6_4:+85640007 None:intergenic
AACTTCATTCCACGGTGTAT+GGG 0.539799 6_4:+85639630 None:intergenic
AAGAACATGCTGAGATTGAA+AGG 0.540342 6_4:-85649094 Msa1001770:CDS
TACTCTCCCAGAGCCCATAT+GGG 0.543860 6_4:+85639401 None:intergenic
TGTTGTCCCTTATCGGTGCA+GGG 0.544685 6_4:-85639780 Msa1001770:CDS
AGATAACAGGAGTATTTATG+AGG 0.545080 6_4:-85639463 Msa1001770:CDS
GTTAATAATCAATTCACAGA+TGG 0.545863 6_4:-85639610 Msa1001770:CDS
TGTAACGTGAGTGAAGAGTA+TGG 0.547729 6_4:-85641077 Msa1001770:CDS
TGACTTCCTGAAGGCCTCAC+AGG 0.548212 6_4:-85641033 Msa1001770:CDS
TGGGGATTTCTTTATCATGT+GGG 0.548896 6_4:-85641742 Msa1001770:CDS
TGGGGAATTTGCTATACGTA+TGG 0.549854 6_4:-85640075 Msa1001770:CDS
GCACTGAGGCTGCTTGGAGA+AGG 0.550449 6_4:-85642477 Msa1001770:CDS
CTTGGAGAAGGACCTGAAGA+TGG 0.550707 6_4:-85642465 Msa1001770:CDS
AAATTTAGTTCAAACTTCGT+GGG 0.551738 6_4:-85639806 Msa1001770:CDS
AGCCCGGAATACTATTGCTA+AGG 0.551892 6_4:-85641931 Msa1001770:intron
TCTCAATGCATGACCAAGGT+TGG 0.552996 6_4:-85640944 Msa1001770:CDS
CAGAACGAAGATGGTGGATG+GGG 0.555253 6_4:-85642552 Msa1001770:CDS
AGAAGATGGCTTGAAAATCC+AGG 0.558427 6_4:-85641503 Msa1001770:intron
CTATATGGGAAGAAGTTTGT+GGG 0.559860 6_4:-85642029 Msa1001770:CDS
TTTGCTATACGTATGGCACT+TGG 0.562241 6_4:-85640068 Msa1001770:CDS
ATTTGATTAGGTCAGTGATA+GGG 0.563688 6_4:+85642006 None:intergenic
TGGAAGTTGAAGATAGCAGA+AGG 0.564446 6_4:-85649194 Msa1001770:CDS
TGATTATTAACTTCATTCCA+CGG 0.564716 6_4:+85639622 None:intergenic
AAAGGGCCAGCAGATTCTGC+AGG 0.566025 6_4:+85644263 None:intergenic
TCCTCAATTCAAGCTCATGA+TGG 0.566026 6_4:-85644293 Msa1001770:CDS
GAAAACACACAAAACCCTGA+TGG 0.566223 6_4:-85640252 Msa1001770:CDS
CAGGTAGTTGAAAATCCATC+CGG 0.568896 6_4:-85641014 Msa1001770:CDS
AAGTTTGAACTAAATTTGCA+CGG 0.573160 6_4:+85639812 None:intergenic
ATTCCACGGTGTATGGGTGT+AGG 0.573394 6_4:+85639636 None:intergenic
GTACATTGCTTTGAACTCAC+CGG 0.573832 6_4:+85640995 None:intergenic
TGGATGGGGATTCCATATAG+AGG 0.575350 6_4:-85642538 Msa1001770:CDS
TGACCTCTTGATGAGAATGC+AGG 0.575657 6_4:-85649024 Msa1001770:intron
TTCTGTCTAAGCTTGGTGAA+AGG 0.576271 6_4:+85641697 None:intergenic
GCCATCATGAGCTTGAATTG+AGG 0.576423 6_4:+85644292 None:intergenic
ATTGATTACAACAATAAGAA+GGG 0.576445 6_4:-85644330 Msa1001770:CDS
CTTCATAGGACGTCAACACT+GGG 0.580277 6_4:-85649144 Msa1001770:CDS
TATTATGTTTGATAGCGCGT+TGG 0.580947 6_4:-85641594 Msa1001770:CDS
AGATGGTGAAGACAAGGCAA+TGG 0.581885 6_4:-85642448 Msa1001770:CDS
AAATTCACCCCTATTCATCC+AGG 0.582742 6_4:-85642195 Msa1001770:intron
TGGGAATTTGATCCAAATGC+AGG 0.583989 6_4:-85649125 Msa1001770:CDS
GTGTACAACCAATTAGCACC+TGG 0.583999 6_4:+85639314 None:intergenic
CAAGGGATCCTGTAACATAG+AGG 0.586621 6_4:+85644006 None:intergenic
ATACCTGCATTCTCATCAAG+AGG 0.587025 6_4:+85649021 None:intergenic
TCATGTGCTTTCCGAAGTGT+AGG 0.587144 6_4:+85641053 None:intergenic
TTTCACCAAGCTTAGACAGA+AGG 0.587774 6_4:-85641695 Msa1001770:CDS
TCTTTCTTCAAGAATATCAT+CGG 0.588040 6_4:-85639193 Msa1001770:three_prime_UTR
ATTGCTTTGAACTCACCGGA+TGG 0.590740 6_4:+85640999 None:intergenic
GTCAAAGCAGCTTCCTAATG+GGG 0.591159 6_4:-85639965 Msa1001770:CDS
GGTAGAAACCAGAATTCTGG+TGG 0.591415 6_4:+85642219 None:intergenic
GAGGTCCTAGAACCTCATCA+AGG 0.592674 6_4:+85643988 None:intergenic
CCACTAAACCACCATGGTCA+AGG 0.595228 6_4:+85642406 None:intergenic
TTGCATTGGAAGTGTAGAGA+AGG 0.596365 6_4:-85641617 Msa1001770:CDS
CTGCAAGCCAGAAGTAATCA+GGG 0.596867 6_4:+85641524 None:intergenic
ATGATTCAAGATATGTTATG+GGG 0.597243 6_4:-85641760 Msa1001770:CDS
CTTCCCATATAGATATGACA+TGG 0.597880 6_4:+85642040 None:intergenic
ACCTGAAGATGGTGAAGACA+AGG 0.599140 6_4:-85642454 Msa1001770:CDS
AAGAGTATGGTCCTACACTT+CGG 0.599344 6_4:-85641064 Msa1001770:CDS
CAGCAGATTCTGCAGGCCAG+TGG 0.600116 6_4:+85644270 None:intergenic
CTGCACCGCAGAAGGACTCA+AGG 0.601671 6_4:-85640910 Msa1001770:intron
ATGGGGAAAGTTCTGGGTCA+CGG 0.605144 6_4:-85642373 Msa1001770:intron
GTTTAACTGCTGGTGGAATG+GGG 0.606958 6_4:+85644384 None:intergenic
AGTCAGAGACTTGCCAACCT+TGG 0.608423 6_4:+85640931 None:intergenic
TCGGTATTTATATAATCACC+AGG 0.608586 6_4:-85643946 Msa1001770:intron
ACACCCAACTCATAGAGCTA+AGG 0.609087 6_4:-85640313 Msa1001770:CDS
TCTCTACACTTCCAATGCAA+AGG 0.614361 6_4:+85641620 None:intergenic
CTTGGAGTTTATGAGTGGCG+AGG 0.615223 6_4:-85642255 Msa1001770:CDS
TCAAAGCAGCTTCCTAATGG+GGG 0.615650 6_4:-85639964 Msa1001770:CDS
AAGGGATCCTGTAACATAGA+GGG 0.615864 6_4:+85644007 None:intergenic
GGAAAATGTTGTGCTACTGT+CGG 0.617544 6_4:-85642076 Msa1001770:CDS
TGAAGACACACTGATTGAGA+GGG 0.617821 6_4:-85640504 Msa1001770:CDS
TTATTTGTCAAGCCAAAACA+AGG 0.619533 6_4:-85639929 Msa1001770:intron
ATGAGGTGACAGAACGAAGA+TGG 0.622105 6_4:-85642561 Msa1001770:intron
AATTAATCATGTGCGTTACG+AGG 0.622234 6_4:-85641659 Msa1001770:CDS
GACACATATGCAAAGGATCG+TGG 0.624587 6_4:-85640971 Msa1001770:CDS
GAAAGCACATGACTTCCTGA+AGG 0.625323 6_4:-85641042 Msa1001770:CDS
GAGCTTTGGGTGTCAAATGT+GGG 0.627157 6_4:-85641132 Msa1001770:CDS
TATCTTGAATCATAGGATGT+GGG 0.628079 6_4:+85641770 None:intergenic
GAGAAGAAGATATCATAACA+GGG 0.628365 6_4:-85644358 Msa1001770:CDS
GTAGAGGGACTAACAACTTG+TGG 0.629594 6_4:-85640039 Msa1001770:CDS
AGGTACTTGGAGTTTATGAG+TGG 0.631997 6_4:-85642260 Msa1001770:CDS
AAGTTGAAGATAGCAGAAGG+AGG 0.632969 6_4:-85649191 Msa1001770:CDS
AGAGCTTTGGGTGTCAAATG+TGG 0.632997 6_4:-85641133 Msa1001770:CDS
AGGTCCTAGAACCTCATCAA+GGG 0.639948 6_4:+85643989 None:intergenic
ATGTACAGACACATATGCAA+AGG 0.641280 6_4:-85640978 Msa1001770:CDS
TAAAACCTTGAGTCCTTCTG+CGG 0.644286 6_4:+85640905 None:intergenic
TGTTACAGGATCCCTTGATG+AGG 0.647790 6_4:-85644000 Msa1001770:CDS
TCGCTACAGAGCAGTAATGG+CGG 0.652702 6_4:-85640696 Msa1001770:CDS
GTATGCACCTGGATGAATAG+GGG 0.653207 6_4:+85642188 None:intergenic
CATTACTGCTCTGTAGCGAG+AGG 0.654544 6_4:+85640700 None:intergenic
TAGAATACCAGGATCCATCA+GGG 0.660292 6_4:+85640238 None:intergenic
TTAGTGGCTATTCCATCATG+GGG 0.661744 6_4:-85642390 Msa1001770:CDS
CAAAGCAGCTTCCTAATGGG+GGG 0.662526 6_4:-85639963 Msa1001770:CDS
AATTGGATCCTTGACCATGG+TGG 0.663800 6_4:-85642414 Msa1001770:CDS
GGATGGGGATTCCATATAGA+GGG 0.664160 6_4:-85642537 Msa1001770:CDS
AGGTGACAGAACGAAGATGG+TGG 0.664546 6_4:-85642558 Msa1001770:intron
TGTACAACCAATTAGCACCT+GGG 0.664652 6_4:+85639315 None:intergenic
TTCCCATATAGATATGACAT+GGG 0.670291 6_4:+85642041 None:intergenic
AGAAGAAGATATCATAACAG+GGG 0.679958 6_4:-85644357 Msa1001770:CDS
TAGCTTTGTGAAGAGATACA+GGG 0.686063 6_4:+85640335 None:intergenic
GGTTGAAGACCCGAACTCAG+AGG 0.694258 6_4:-85641572 Msa1001770:CDS
ACATTCTCAATGCATGACCA+AGG 0.704194 6_4:-85640948 Msa1001770:CDS
ATTGTAACTACTCACTACCC+AGG 0.711259 6_4:-85639332 Msa1001770:three_prime_UTR
GAATAGCCACTAAACCACCA+TGG 0.737768 6_4:+85642400 None:intergenic
AGAAATTGGATCCTTGACCA+TGG 0.742771 6_4:-85642417 Msa1001770:CDS
GATCCTACACCCATACACCG+TGG 0.761975 6_4:-85639639 Msa1001770:CDS
CATTGAGCTATATTGCACTG+AGG 0.768445 6_4:-85642491 Msa1001770:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATAATTAACTTTATTTTACT+CGG + chr6_4:85640660-85640679 None:intergenic 10.0%
!! TTTAATGTAACATTAATTAT+TGG - chr6_4:85640889-85640908 Msa1001770:intron 10.0%
!!! AACTATTAGATTTTAAAATA+GGG + chr6_4:85641004-85641023 None:intergenic 10.0%
!!! AAACTATTAGATTTTAAAAT+AGG + chr6_4:85641005-85641024 None:intergenic 10.0%
!!! ATTTTAAAATCTAATAGTTT+TGG - chr6_4:85641005-85641024 Msa1001770:CDS 10.0%
!! ACAAAATTATAGATATTTAT+AGG - chr6_4:85641440-85641459 Msa1001770:intron 10.0%
!!! TATTTCGTTTTATTTTATTT+CGG - chr6_4:85642023-85642042 Msa1001770:CDS 10.0%
!!! TATTTCGTTTTATTTTATTT+CGG + chr6_4:85642023-85642042 None:intergenic 10.0%
!!! GTTAGAAAAAATTTATTTTA+TGG + chr6_4:85642908-85642927 None:intergenic 10.0%
!!! TTATAAAAACTAGTTTTTTT+AGG - chr6_4:85643799-85643818 Msa1001770:intron 10.0%
!! ATATATATGTTGAGATAATT+TGG + chr6_4:85639158-85639177 None:intergenic 15.0%
!! ACTTGAAATTATATATCTAT+AGG + chr6_4:85639453-85639472 None:intergenic 15.0%
!!! TAAATGCTTTTTTTTTTTGT+CGG + chr6_4:85639813-85639832 None:intergenic 15.0%
!!! AAGAGCAATTTTATTTTTTT+TGG - chr6_4:85640204-85640223 Msa1001770:intron 15.0%
!!! AAGTGAATAAATTTTTTGTA+GGG + chr6_4:85640468-85640487 None:intergenic 15.0%
!!! AAAGTGAATAAATTTTTTGT+AGG + chr6_4:85640469-85640488 None:intergenic 15.0%
!!! TATTATTTGCATTTTTTTAC+CGG - chr6_4:85640493-85640512 Msa1001770:intron 15.0%
!! ATAAAATGCAAATATAATTC+CGG + chr6_4:85640515-85640534 None:intergenic 15.0%
!!! TGAAAACTTTTTACAAAAAA+TGG + chr6_4:85640565-85640584 None:intergenic 15.0%
!! TAAGTCTATTGAAAAAAAAA+AGG + chr6_4:85640934-85640953 None:intergenic 15.0%
!!! ACCATATTTTAATCATTTTA+TGG - chr6_4:85640969-85640988 Msa1001770:CDS 15.0%
!! TCCATAAAATGATTAAAATA+TGG + chr6_4:85640973-85640992 None:intergenic 15.0%
!!! ACTATTAGATTTTAAAATAG+GGG + chr6_4:85641003-85641022 None:intergenic 15.0%
!!! ATTAACCATTTAAAATTTGA+CGG + chr6_4:85641206-85641225 None:intergenic 15.0%
!! TAAATGGTTAATTAAGTAAA+TGG - chr6_4:85641214-85641233 Msa1001770:intron 15.0%
!!! AATGTTGATAGAAAATTTTA+CGG - chr6_4:85641348-85641367 Msa1001770:intron 15.0%
!!! GATCACTATATTTTAAAATT+CGG + chr6_4:85641484-85641503 None:intergenic 15.0%
!!! ACTATAGTTTTACATTTTTT+AGG + chr6_4:85641511-85641530 None:intergenic 15.0%
!!! TCTAATTGTTTATACTTTTT+TGG + chr6_4:85641536-85641555 None:intergenic 15.0%
!! AAAGTATAAACAATTAGAAT+AGG - chr6_4:85641538-85641557 Msa1001770:CDS 15.0%
!! GTTTAGTTATAGAAAAAATT+TGG - chr6_4:85643259-85643278 Msa1001770:intron 15.0%
!!! ATCTTTTTATATACGATTAA+AGG - chr6_4:85643482-85643501 Msa1001770:intron 15.0%
!!! AAAAAAAGTATTTTACTACA+AGG + chr6_4:85643861-85643880 None:intergenic 15.0%
!! TTTATACAAAAGAGAAAATT+TGG - chr6_4:85644227-85644246 Msa1001770:intron 15.0%
!!! AGTTATTTGTTTTTTTTTCA+GGG + chr6_4:85644563-85644582 None:intergenic 15.0%
!! ATATAAGTATATATATAGCA+AGG + chr6_4:85644802-85644821 None:intergenic 15.0%
!! GTTATTACTGAATAATAAAA+TGG + chr6_4:85645573-85645592 None:intergenic 15.0%
!! AAGATATAGATAATATAGAT+TGG + chr6_4:85646516-85646535 None:intergenic 15.0%
!! ATAAAAATACAATATTAACC+TGG + chr6_4:85646922-85646941 None:intergenic 15.0%
!! TAAATATGATTAGTATCTTT+AGG - chr6_4:85646994-85647013 Msa1001770:intron 15.0%
!! AAAATCTGATTCTATTATAT+GGG + chr6_4:85647132-85647151 None:intergenic 15.0%
!!! TAAATGTTAACTATTTTTGT+AGG - chr6_4:85647541-85647560 Msa1001770:intron 15.0%
!!! ATAATATATATACCTTGTTT+TGG + chr6_4:85648490-85648509 None:intergenic 15.0%
!!! TTTTCCTTGTTAATTTAAAT+AGG - chr6_4:85648547-85648566 Msa1001770:intron 15.0%
!! TATACCTATTTAAATTAACA+AGG + chr6_4:85648554-85648573 None:intergenic 15.0%
!! AGAATAGTATATAAAATTGA+TGG + chr6_4:85648869-85648888 None:intergenic 15.0%
!!! AAATGCTTTTTTTTTTTGTC+GGG + chr6_4:85639812-85639831 None:intergenic 20.0%
!!! TTAGCTTGTTTTTACTTATT+TGG + chr6_4:85639985-85640004 None:intergenic 20.0%
!!! AGCAATTTTATTTTTTTTGG+TGG - chr6_4:85640207-85640226 Msa1001770:intron 20.0%
!!! AATTTTATTTTTTTTGGTGG+TGG - chr6_4:85640210-85640229 Msa1001770:intron 20.0%
!! ATATCTGCAATTAAATGAAT+TGG + chr6_4:85640743-85640762 None:intergenic 20.0%
!! TGTAATTTACCTTAAATTTC+AGG - chr6_4:85640769-85640788 Msa1001770:CDS 20.0%
!! AGATAATAACCTGAAATTTA+AGG + chr6_4:85640781-85640800 None:intergenic 20.0%
!!! TTTCTAAATACTTGTACTTT+TGG - chr6_4:85640828-85640847 Msa1001770:intron 20.0%
!!! AATAGACTTAATTGCAATTT+TGG - chr6_4:85640944-85640963 Msa1001770:CDS 20.0%
!!! CTATTAGATTTTAAAATAGG+GGG + chr6_4:85641002-85641021 None:intergenic 20.0%
!!! TAAAACCGTCAAATTTTAAA+TGG - chr6_4:85641198-85641217 Msa1001770:intron 20.0%
!!! ATGTTGATAGAAAATTTTAC+GGG - chr6_4:85641349-85641368 Msa1001770:intron 20.0%
!!! AAAGTGTGATTTTATTTTGT+AGG - chr6_4:85641409-85641428 Msa1001770:intron 20.0%
!!! AAGTGTGATTTTATTTTGTA+GGG - chr6_4:85641410-85641429 Msa1001770:intron 20.0%
!! AATTAACCATAAATCACTAA+AGG + chr6_4:85641747-85641766 None:intergenic 20.0%
!!! AACATCTTGTTTTTATTGAA+AGG - chr6_4:85641873-85641892 Msa1001770:intron 20.0%
!! TTTATTGAAAGGATTAGATT+AGG - chr6_4:85641884-85641903 Msa1001770:intron 20.0%
!! TCTAGAAAATTACTAAGATT+TGG + chr6_4:85642561-85642580 None:intergenic 20.0%
!! TCTAGAAAATTACTAAGATT+TGG - chr6_4:85642561-85642580 Msa1001770:intron 20.0%
!! TTGCTTTCATTTACTTATTT+CGG - chr6_4:85642708-85642727 Msa1001770:intron 20.0%
!!! TTTTCTAACCAAAAGTAATT+AGG - chr6_4:85642919-85642938 Msa1001770:intron 20.0%
!! AAAACACTTCATAGTATATT+TGG + chr6_4:85643096-85643115 None:intergenic 20.0%
!!! AATTTGGTGTACATTTTATA+TGG - chr6_4:85643275-85643294 Msa1001770:intron 20.0%
!! GATGTAATTAATGTGATAAA+TGG - chr6_4:85643321-85643340 Msa1001770:intron 20.0%
!! ATTAATATAACAGTTGTCAT+TGG - chr6_4:85643639-85643658 Msa1001770:intron 20.0%
!! ATTGATTACAACAATAAGAA+GGG - chr6_4:85644074-85644093 Msa1001770:intron 20.0%
!!! TCTTTTGTATAAAGATCAAA+GGG + chr6_4:85644220-85644239 None:intergenic 20.0%
!!! TTTTATATATAAGAAAAGGC+TGG + chr6_4:85644288-85644307 None:intergenic 20.0%
!!! CCAGTTTTATATATAAGAAA+AGG + chr6_4:85644292-85644311 None:intergenic 20.0%
!!! CCTTTTCTTATATATAAAAC+TGG - chr6_4:85644289-85644308 Msa1001770:CDS 20.0%
!!! CAGTTATTTGTTTTTTTTTC+AGG + chr6_4:85644564-85644583 None:intergenic 20.0%
!!! AACAATTATAGTTTTGAAGA+GGG + chr6_4:85644671-85644690 None:intergenic 20.0%
!!! AAACAATTATAGTTTTGAAG+AGG + chr6_4:85644672-85644691 None:intergenic 20.0%
!!! TTCATCTTATTAGTTTTTCA+GGG - chr6_4:85645129-85645148 Msa1001770:intron 20.0%
!! TCAAATGCAATTAAGAAAAA+GGG + chr6_4:85645637-85645656 None:intergenic 20.0%
!! TTCAAATGCAATTAAGAAAA+AGG + chr6_4:85645638-85645657 None:intergenic 20.0%
!! TAATACTTACTAGACAAAAA+GGG + chr6_4:85645710-85645729 None:intergenic 20.0%
!! ATAATACTTACTAGACAAAA+AGG + chr6_4:85645711-85645730 None:intergenic 20.0%
!! TCAAATTAAATATGCATTCA+GGG - chr6_4:85646307-85646326 Msa1001770:intron 20.0%
!! TAGATATATGAAACTGAAAA+TGG - chr6_4:85646584-85646603 Msa1001770:intron 20.0%
!! TATGATTCAAGATATGTTAT+GGG - chr6_4:85646643-85646662 Msa1001770:intron 20.0%
!! AAAATTAAATGAAATGTTGC+AGG + chr6_4:85646963-85646982 None:intergenic 20.0%
!! AAGCTAAAGAAATATAATCA+AGG + chr6_4:85647036-85647055 None:intergenic 20.0%
!! TTGATTCTTTCTCTAATTAT+TGG - chr6_4:85647067-85647086 Msa1001770:intron 20.0%
!! AAATCTGATTCTATTATATG+GGG + chr6_4:85647131-85647150 None:intergenic 20.0%
!! GAAAATCTGATTCTATTATA+TGG + chr6_4:85647133-85647152 None:intergenic 20.0%
!! TCCTTCAAAAAAAAAAATCA+TGG - chr6_4:85647196-85647215 Msa1001770:intron 20.0%
!!! ACCATGATTTTTTTTTTTGA+AGG + chr6_4:85647200-85647219 None:intergenic 20.0%
!!! TTAACAACTGTTAATTTTAG+TGG + chr6_4:85647234-85647253 None:intergenic 20.0%
!!! TTTTTCAAAATATACATGCA+TGG - chr6_4:85647564-85647583 Msa1001770:intron 20.0%
!!! GACTTTCTTTAATTTTTGTT+TGG - chr6_4:85648246-85648265 Msa1001770:intron 20.0%
!! CATAATTTATAATTACCAAG+AGG + chr6_4:85648690-85648709 None:intergenic 20.0%
!!! TGAATGTTTTTGTTACAAAA+AGG - chr6_4:85648734-85648753 Msa1001770:intron 20.0%
!! TAGTATATAAAATTGATGGA+AGG + chr6_4:85648865-85648884 None:intergenic 20.0%
!! AAATTAAAAAATGCAACTAC+AGG - chr6_4:85648918-85648937 Msa1001770:intron 20.0%
!!! AGGTGTCGTTAATATTATTA+AGG - chr6_4:85639116-85639135 Msa1001770:three_prime_UTR 25.0%
! AGAGAATAAAGAAAAAGATG+TGG - chr6_4:85639190-85639209 Msa1001770:three_prime_UTR 25.0%
! ATTTCTGTGAATAACTTCAT+AGG - chr6_4:85639246-85639265 Msa1001770:three_prime_UTR 25.0%
!! TTTGATGGAGAATCTATTTT+TGG + chr6_4:85639352-85639371 None:intergenic 25.0%
!!! TCTGGATTTTCTAGTTATTT+AGG + chr6_4:85639543-85639562 None:intergenic 25.0%
! ACAATGCATTAATATATGCA+AGG - chr6_4:85639772-85639791 Msa1001770:intron 25.0%
!!! AATGCTTTTTTTTTTTGTCG+GGG + chr6_4:85639811-85639830 None:intergenic 25.0%
! TAATCAAAGTAATTAGCTAG+TGG - chr6_4:85639860-85639879 Msa1001770:intron 25.0%
!!! TTGTTTCTGTTTTGGATATA+GGG + chr6_4:85640339-85640358 None:intergenic 25.0%
!!! TTTGTTTCTGTTTTGGATAT+AGG + chr6_4:85640340-85640359 None:intergenic 25.0%
!!! TGTAAAAAGTTTTCAAGTCA+TGG - chr6_4:85640570-85640589 Msa1001770:intron 25.0%
! AATGTGATATATTTACCTGA+TGG - chr6_4:85641079-85641098 Msa1001770:CDS 25.0%
!!! TGTTGATAGAAAATTTTACG+GGG - chr6_4:85641350-85641369 Msa1001770:intron 25.0%
!! ACAAGATGTTAAGTGTTTTA+TGG + chr6_4:85641863-85641882 None:intergenic 25.0%
!!! TTTTATTTTATTTCGGTCCA+CGG - chr6_4:85642030-85642049 Msa1001770:CDS 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG - chr6_4:85642221-85642240 Msa1001770:CDS 25.0%
!!! AAACTTGTTCTTTTCTATCT+AGG + chr6_4:85642221-85642240 None:intergenic 25.0%
! ATATAACTTCTGTAACATCA+AGG + chr6_4:85642767-85642786 None:intergenic 25.0%
! AACACATATATCTAACTCTA+AGG + chr6_4:85643041-85643060 None:intergenic 25.0%
! AATTACATCATTCTCTCTTA+AGG + chr6_4:85643310-85643329 None:intergenic 25.0%
! AGAGAGAAATAGAGATAAAA+TGG - chr6_4:85643401-85643420 Msa1001770:intron 25.0%
! AATGGAATGTTGAATATATG+TGG - chr6_4:85643419-85643438 Msa1001770:intron 25.0%
! ATGGAATGTTGAATATATGT+GGG - chr6_4:85643420-85643439 Msa1001770:intron 25.0%
! TGAATTTATGGTTAAAGAGA+TGG - chr6_4:85643563-85643582 Msa1001770:intron 25.0%
!!! ATTAGTTTTTTCTCTTTGTC+AGG + chr6_4:85643606-85643625 None:intergenic 25.0%
!! TCCAATGTCATTTCTAAATA+TGG - chr6_4:85643949-85643968 Msa1001770:CDS 25.0%
! ACCATATTTAGAAATGACAT+TGG + chr6_4:85643953-85643972 None:intergenic 25.0%
!! CATTGATTACAACAATAAGA+AGG - chr6_4:85644073-85644092 Msa1001770:intron 25.0%
! ATGGTTGAACAAAAAACAAA+GGG + chr6_4:85644161-85644180 None:intergenic 25.0%
! AATGGTTGAACAAAAAACAA+AGG + chr6_4:85644162-85644181 None:intergenic 25.0%
!!! TTTGTTTTTTGTTCAACCAT+TGG - chr6_4:85644161-85644180 Msa1001770:intron 25.0%
!! CTCTTTTGTATAAAGATCAA+AGG + chr6_4:85644221-85644240 None:intergenic 25.0%
! ACTAATTACTATATGCATAC+AGG - chr6_4:85644368-85644387 Msa1001770:CDS 25.0%
! AACATAAGAAGGAAATTGTT+CGG - chr6_4:85644439-85644458 Msa1001770:intron 25.0%
! ATTTGATCTCAATTATTCTG+AGG + chr6_4:85644535-85644554 None:intergenic 25.0%
! TAACTGTAATCCTAACAAAT+TGG - chr6_4:85644578-85644597 Msa1001770:intron 25.0%
! AACTGTAATCCTAACAAATT+GGG - chr6_4:85644579-85644598 Msa1001770:intron 25.0%
!! TATGATTATCCCAATTTGTT+AGG + chr6_4:85644591-85644610 None:intergenic 25.0%
! TTAACATAACTGAATGAGTT+AGG - chr6_4:85644614-85644633 Msa1001770:intron 25.0%
!!! ACAATTATAGTTTTGAAGAG+GGG + chr6_4:85644670-85644689 None:intergenic 25.0%
! TATATATATAGCAAGGAGTA+GGG + chr6_4:85644795-85644814 None:intergenic 25.0%
! TATATATAAGCACTTCATTG+AGG - chr6_4:85644817-85644836 Msa1001770:intron 25.0%
! TTCATTGATACCATGTTATA+TGG + chr6_4:85644990-85645009 None:intergenic 25.0%
!!! GTTCATCTTATTAGTTTTTC+AGG - chr6_4:85645128-85645147 Msa1001770:intron 25.0%
! AGTAATTGCTAAAAACTACA+AGG - chr6_4:85645167-85645186 Msa1001770:intron 25.0%
!! AAGGATGTTTATTTAGGTTT+AGG + chr6_4:85645201-85645220 None:intergenic 25.0%
! AGTGTAAAGGATGTTTATTT+AGG + chr6_4:85645207-85645226 None:intergenic 25.0%
! CAATGTTTGAATTTGATGAA+TGG - chr6_4:85645342-85645361 Msa1001770:intron 25.0%
!!! AATTTGATGAATGGTGTTAT+AGG - chr6_4:85645351-85645370 Msa1001770:intron 25.0%
! AATTAAATAGCACACTAACT+AGG - chr6_4:85645430-85645449 Msa1001770:intron 25.0%
!! ACTAGGATCAATTTAAGTTT+AGG - chr6_4:85645447-85645466 Msa1001770:intron 25.0%
!!! GGTGAAATAATCTTTTTTTG+CGG - chr6_4:85645508-85645527 Msa1001770:intron 25.0%
! AATAACTTATATGCGAATTG+TGG - chr6_4:85645587-85645606 Msa1001770:intron 25.0%
! CAAATGCAATTAAGAAAAAG+GGG + chr6_4:85645636-85645655 None:intergenic 25.0%
!!! ATGCATATTTAATTTGACCA+AGG + chr6_4:85646304-85646323 None:intergenic 25.0%
! GTCAAATTAAATATGCATTC+AGG - chr6_4:85646306-85646325 Msa1001770:intron 25.0%
! CATAACATATCTTGAATCAT+AGG + chr6_4:85646644-85646663 None:intergenic 25.0%
! CTATGATTCAAGATATGTTA+TGG - chr6_4:85646642-85646661 Msa1001770:intron 25.0%
! ATGATTCAAGATATGTTATG+GGG - chr6_4:85646644-85646663 Msa1001770:intron 25.0%
! TTTATTCATTCAACCAACTA+AGG - chr6_4:85646937-85646956 Msa1001770:intron 25.0%
! GTGTTCATTGTGAAATTAAT+AGG - chr6_4:85648015-85648034 Msa1001770:intron 25.0%
! TTCAATGAAATGAATTGCTT+TGG + chr6_4:85648135-85648154 None:intergenic 25.0%
! GTTTAACACAATAGATCATT+AGG + chr6_4:85648222-85648241 None:intergenic 25.0%
! AAGTTTGAACTAAATTTGCA+CGG + chr6_4:85648595-85648614 None:intergenic 25.0%
!! AAATTTAGTTCAAACTTCGT+GGG - chr6_4:85648598-85648617 Msa1001770:intron 25.0%
! TGATTATTAACTTCATTCCA+CGG + chr6_4:85648785-85648804 None:intergenic 25.0%
! GTTAATAATCAATTCACAGA+TGG - chr6_4:85648794-85648813 Msa1001770:intron 25.0%
!! TTTCCGAATTTTGTATTTTC+TGG - chr6_4:85649146-85649165 Msa1001770:CDS 25.0%
! TTTGTAAAAAAACTGTCGAT+TGG - chr6_4:85649172-85649191 Msa1001770:CDS 25.0%
! TCTTTCTTCAAGAATATCAT+CGG - chr6_4:85649211-85649230 Msa1001770:exon 25.0%
!! TAACTTATTCCTTTTCAGAA+AGG - chr6_4:85649270-85649289 Msa1001770:five_prime_UTR 25.0%
!! TATATATTGCCTTTCTGAAA+AGG + chr6_4:85649282-85649301 None:intergenic 25.0%
AGAAAATCCAGAGTTCAAAA+TGG - chr6_4:85639551-85639570 Msa1001770:intron 30.0%
GAAAATCCAGAGTTCAAAAT+GGG - chr6_4:85639552-85639571 Msa1001770:intron 30.0%
CATTAATATATGCAAGGTCT+GGG - chr6_4:85639778-85639797 Msa1001770:CDS 30.0%
ATTAATATATGCAAGGTCTG+GGG - chr6_4:85639779-85639798 Msa1001770:CDS 30.0%
!!! GCTTGTTTTTACTTATTTGG+TGG + chr6_4:85639982-85640001 None:intergenic 30.0%
TTATCGTATGCTACTATCAT+AGG + chr6_4:85640026-85640045 None:intergenic 30.0%
AAAATTGCTCTTCTTTCATC+TGG + chr6_4:85640196-85640215 None:intergenic 30.0%
GACAATGCATTAAATATGCA+AGG + chr6_4:85640255-85640274 None:intergenic 30.0%
!!! GTGTTGTTTTGTTTCTGTTT+TGG + chr6_4:85640347-85640366 None:intergenic 30.0%
!! TGAAGGAGAACACTTTATTT+TGG + chr6_4:85640702-85640721 None:intergenic 30.0%
! GTTGATATTTTTCTACCATC+AGG + chr6_4:85641097-85641116 None:intergenic 30.0%
!!! CTAAAAAGTGTGGTTTTGTA+AGG + chr6_4:85641272-85641291 None:intergenic 30.0%
TTTGGTCTCAAAATGTTTGA+AGG + chr6_4:85641296-85641315 None:intergenic 30.0%
! AAAATTTCCGTCTGAAACTT+TGG + chr6_4:85641314-85641333 None:intergenic 30.0%
TATGTACTCATCTTAACGTA+CGG + chr6_4:85641578-85641597 None:intergenic 30.0%
! AAAAAAGACCTGCATGTTTT+TGG + chr6_4:85641787-85641806 None:intergenic 30.0%
!!! GTCTTTTTTCTCACCATTTT+TGG - chr6_4:85641798-85641817 Msa1001770:intron 30.0%
AGATTAGGTTTGAAGAATTG+TGG - chr6_4:85641899-85641918 Msa1001770:intron 30.0%
!!! TTTATTTTATTTCGGTCCAC+GGG - chr6_4:85642031-85642050 Msa1001770:CDS 30.0%
TAAAAGAAATAACAAACCCG+TGG + chr6_4:85642050-85642069 None:intergenic 30.0%
CGACAAACCTATCAAAATAA+GGG + chr6_4:85642385-85642404 None:intergenic 30.0%
CCAACAAACTTGTGAAAATA+GGG + chr6_4:85642355-85642374 None:intergenic 30.0%
ACCAACAAACTTGTGAAAAT+AGG + chr6_4:85642354-85642373 None:intergenic 30.0%
ACCAACAAACTTGTGAAAAT+AGG - chr6_4:85642354-85642373 Msa1001770:intron 30.0%
CCAACAAACTTGTGAAAATA+GGG - chr6_4:85642355-85642374 Msa1001770:intron 30.0%
CGACAAACCTATCAAAATAA+GGG - chr6_4:85642385-85642404 Msa1001770:CDS 30.0%
CTACATAAGTTCTGCTTATA+TGG - chr6_4:85642479-85642498 Msa1001770:CDS 30.0%
!!! TTTTATTTTATTTCGGCCCA+CGG + chr6_4:85642522-85642541 None:intergenic 30.0%
CAACTTTCATTGCATTCATT+CGG - chr6_4:85642679-85642698 Msa1001770:intron 30.0%
! GTCATAGTCCTAATTACTTT+TGG + chr6_4:85642930-85642949 None:intergenic 30.0%
! AAACCGTATTGGATACTTTT+GGG + chr6_4:85642965-85642984 None:intergenic 30.0%
! TAAACCGTATTGGATACTTT+TGG + chr6_4:85642966-85642985 None:intergenic 30.0%
ATGTGTTACGTTCATTTACT+TGG - chr6_4:85643054-85643073 Msa1001770:intron 30.0%
TGGAATGTTGAATATATGTG+GGG - chr6_4:85643421-85643440 Msa1001770:intron 30.0%
TTGAATATATGTGGGGAAAA+TGG - chr6_4:85643428-85643447 Msa1001770:intron 30.0%
TGAATATATGTGGGGAAAAT+GGG - chr6_4:85643429-85643448 Msa1001770:intron 30.0%
ATTTATGGTTAAAGAGATGG+AGG - chr6_4:85643566-85643585 Msa1001770:intron 30.0%
ATATAACAGTTGTCATTGGA+AGG - chr6_4:85643643-85643662 Msa1001770:intron 30.0%
AGAGAAGAAGATATCATAAC+AGG - chr6_4:85644045-85644064 Msa1001770:intron 30.0%
GAGAAGAAGATATCATAACA+GGG - chr6_4:85644046-85644065 Msa1001770:intron 30.0%
AGAAGAAGATATCATAACAG+GGG - chr6_4:85644047-85644066 Msa1001770:intron 30.0%
AGTTTCAATCGAAGATCAAA+GGG + chr6_4:85644197-85644216 None:intergenic 30.0%
TACTATATGCATACAGGTAA+TGG - chr6_4:85644374-85644393 Msa1001770:CDS 30.0%
ACAATTTCCTTCTTATGTTG+AGG + chr6_4:85644438-85644457 None:intergenic 30.0%
TCGGTATTTATATAATCACC+AGG - chr6_4:85644458-85644477 Msa1001770:intron 30.0%
TGCATGATTTACATAATACC+TGG + chr6_4:85644479-85644498 None:intergenic 30.0%
!!! CAATTATAGTTTTGAAGAGG+GGG + chr6_4:85644669-85644688 None:intergenic 30.0%
! ACATTGTCTGAAGCAAAATA+GGG + chr6_4:85644760-85644779 None:intergenic 30.0%
! AACATTGTCTGAAGCAAAAT+AGG + chr6_4:85644761-85644780 None:intergenic 30.0%
ATATATATAGCAAGGAGTAG+GGG + chr6_4:85644794-85644813 None:intergenic 30.0%
GTATATATATAGCAAGGAGT+AGG + chr6_4:85644796-85644815 None:intergenic 30.0%
TGTCTATTGTTTAGTGAAGA+TGG + chr6_4:85644904-85644923 None:intergenic 30.0%
ACTATCTCTTCCATATAACA+TGG - chr6_4:85644977-85644996 Msa1001770:intron 30.0%
!!! ATTAGTTTTTCAGGGAGAAT+AGG - chr6_4:85645137-85645156 Msa1001770:intron 30.0%
TTCTTTGTGATAGAGTGTAA+AGG + chr6_4:85645220-85645239 None:intergenic 30.0%
!! CACAAAGAAAGCATCATAAT+AGG - chr6_4:85645231-85645250 Msa1001770:intron 30.0%
CACAAACATTGCAAAACTTT+GGG + chr6_4:85645262-85645281 None:intergenic 30.0%
TCACAAACATTGCAAAACTT+TGG + chr6_4:85645263-85645282 None:intergenic 30.0%
AGGATTAAGCTAATTGTGTA+AGG - chr6_4:85645467-85645486 Msa1001770:intron 30.0%
TAAGCTAATTGTGTAAGGTT+TGG - chr6_4:85645472-85645491 Msa1001770:intron 30.0%
AATTAATGCAAGGAAGTCTT+AGG + chr6_4:85645663-85645682 None:intergenic 30.0%
TCAACTCATCGATAAAATGA+TGG - chr6_4:85645742-85645761 Msa1001770:intron 30.0%
TTGACAGTATATGACTTTCT+TGG + chr6_4:85645777-85645796 None:intergenic 30.0%
TTTCAATACCATTTGTGATG+AGG - chr6_4:85645826-85645845 Msa1001770:intron 30.0%
TAAGCAATCACGCTATATAT+AGG - chr6_4:85646124-85646143 Msa1001770:intron 30.0%
ATGGTTGCATATAGAAGTTA+AGG + chr6_4:85646267-85646286 None:intergenic 30.0%
TTCCCATATAGATATGACAT+GGG + chr6_4:85646366-85646385 None:intergenic 30.0%
ATTTGATTAGGTCAGTGATA+GGG + chr6_4:85646401-85646420 None:intergenic 30.0%
AACCTTATGATCAAATCAAC+TGG - chr6_4:85646445-85646464 Msa1001770:intron 30.0%
!! TTCCAGTTGATTTGATCATA+AGG + chr6_4:85646450-85646469 None:intergenic 30.0%
AAACCTTAGCAATAGTATTC+CGG + chr6_4:85646479-85646498 None:intergenic 30.0%
TATCTTGAATCATAGGATGT+GGG + chr6_4:85646637-85646656 None:intergenic 30.0%
ATATCTTGAATCATAGGATG+TGG + chr6_4:85646638-85646657 None:intergenic 30.0%
GAGAAAGAATCAACTAAGAA+AGG + chr6_4:85647060-85647079 None:intergenic 30.0%
TCTAATTATTGGAACTGACT+AGG - chr6_4:85647078-85647097 Msa1001770:intron 30.0%
TAATAATGAATGCAGAGCTT+TGG - chr6_4:85647258-85647277 Msa1001770:intron 30.0%
AATAATGAATGCAGAGCTTT+GGG - chr6_4:85647259-85647278 Msa1001770:intron 30.0%
ATATTCATGAAAACACATGC+AGG - chr6_4:85647596-85647615 Msa1001770:intron 30.0%
TGATCTTGTTGGAGAAAAAT+TGG - chr6_4:85647647-85647666 Msa1001770:intron 30.0%
! AACCAACTGTAAGAATTTTG+AGG + chr6_4:85647750-85647769 None:intergenic 30.0%
AAATTCTTACAGTTGGTTAG+AGG - chr6_4:85647752-85647771 Msa1001770:intron 30.0%
!! TGAAATGAATTGCTTTGGAA+AGG + chr6_4:85648130-85648149 None:intergenic 30.0%
TAACACAATAGATCATTAGG+TGG + chr6_4:85648219-85648238 None:intergenic 30.0%
! AAATTGACAAGCTTTTTGCA+AGG + chr6_4:85648414-85648433 None:intergenic 30.0%
TTATTTGTCAAGCCAAAACA+AGG - chr6_4:85648475-85648494 Msa1001770:intron 30.0%
! CAAATTTAGTTCAAACTTCG+TGG - chr6_4:85648597-85648616 Msa1001770:intron 30.0%
ATTTATAATTACCAAGAGGC+AGG + chr6_4:85648686-85648705 None:intergenic 30.0%
!! AGATAACAGGAGTATTTATG+AGG - chr6_4:85648941-85648960 Msa1001770:intron 30.0%
TAGTGAGTAGTTACAATTCA+AGG + chr6_4:85649069-85649088 None:intergenic 30.0%
CTGCCAGAAAATACAAAATT+CGG + chr6_4:85649152-85649171 None:intergenic 30.0%
AAGAACATGCTGAGATTGAA+AGG - chr6_4:85639310-85639329 Msa1001770:three_prime_UTR 35.0%
! CATTTTTAACAAGTGCCCTT+AGG + chr6_4:85639597-85639616 None:intergenic 35.0%
GCATTAATATATGCAAGGTC+TGG - chr6_4:85639777-85639796 Msa1001770:CDS 35.0%
AAGAGTCCTGTGATACAAAA+TGG - chr6_4:85639950-85639969 Msa1001770:CDS 35.0%
! ATAGGCTTTTGTTAGATGAG+TGG + chr6_4:85640008-85640027 None:intergenic 35.0%
GGAAATGAGCAAAATCAGAT+GGG + chr6_4:85640059-85640078 None:intergenic 35.0%
TGGAAATGAGCAAAATCAGA+TGG + chr6_4:85640060-85640079 None:intergenic 35.0%
GTCAATTAACTCACGTTAAG+TGG + chr6_4:85640080-85640099 None:intergenic 35.0%
!!! TTATTTTTTTTGGTGGTGGC+CGG - chr6_4:85640214-85640233 Msa1001770:intron 35.0%
CATTAAATATGCAAGGTACG+AGG + chr6_4:85640248-85640267 None:intergenic 35.0%
AACACCAGACAGAATAAAAG+CGG - chr6_4:85640362-85640381 Msa1001770:CDS 35.0%
TGAATTGGATACCAAGTATG+AGG + chr6_4:85640728-85640747 None:intergenic 35.0%
GTTTGAAGGACTAAAAAGTG+TGG + chr6_4:85641282-85641301 None:intergenic 35.0%
! TTTGAGACCAAAGTTTCAGA+CGG - chr6_4:85641304-85641323 Msa1001770:intron 35.0%
CATAACTAGATTGCGTTACT+TGG - chr6_4:85641599-85641618 Msa1001770:CDS 35.0%
TCTTTATCCTATGAAGTCGA+TGG + chr6_4:85641686-85641705 None:intergenic 35.0%
ACACGATCTAGTTAATCTAG+GGG + chr6_4:85641724-85641743 None:intergenic 35.0%
GACACGATCTAGTTAATCTA+GGG + chr6_4:85641725-85641744 None:intergenic 35.0%
TCGTGTCCTTTAGTGATTTA+TGG - chr6_4:85641738-85641757 Msa1001770:CDS 35.0%
ATCATTCTCCAAAAACATGC+AGG - chr6_4:85641776-85641795 Msa1001770:CDS 35.0%
GTAACTTTACGTGCCAAAAA+TGG + chr6_4:85641814-85641833 None:intergenic 35.0%
ATTGTGGAAGAGATATAGCA+AGG - chr6_4:85641915-85641934 Msa1001770:intron 35.0%
TTGTGGAAGAGATATAGCAA+GGG - chr6_4:85641916-85641935 Msa1001770:intron 35.0%
! AATCAAAAAGTGTGCCTCTT+AGG + chr6_4:85642456-85642475 None:intergenic 35.0%
! AGATTTTCTCTCAATTCTCG+TGG - chr6_4:85642131-85642150 Msa1001770:intron 35.0%
CCTATCAAAATAAGGGTTTC+CGG + chr6_4:85642392-85642411 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG + chr6_4:85642384-85642403 None:intergenic 35.0%
! CCCTATTTTCACAAGTTTGT+TGG - chr6_4:85642194-85642213 Msa1001770:intron 35.0%
! CCCTATTTTCACAAGTTTGT+TGG + chr6_4:85642194-85642213 None:intergenic 35.0%
GCGACAAACCTATCAAAATA+AGG - chr6_4:85642384-85642403 Msa1001770:CDS 35.0%
!!! CTGGAAACCCTTATTTTGAT+AGG + chr6_4:85642395-85642414 None:intergenic 35.0%
! AGATTTTCTCTCAATTCTGG+TGG + chr6_4:85642421-85642440 None:intergenic 35.0%
! TCGAGATTTTCTCTCAATTC+TGG + chr6_4:85642128-85642147 None:intergenic 35.0%
! AATCAAAAAGTGTGCCTCTT+AGG - chr6_4:85642456-85642475 Msa1001770:CDS 35.0%
TGAAAGAAATAACAAACCCG+TGG - chr6_4:85642502-85642521 Msa1001770:CDS 35.0%
GAAAGAAATAACAAACCCGT+GGG - chr6_4:85642503-85642522 Msa1001770:CDS 35.0%
!!! TTTATTTTATTTCGGCCCAC+GGG + chr6_4:85642521-85642540 None:intergenic 35.0%
TAATAAAACCCTCTTGCATC+AGG - chr6_4:85642610-85642629 Msa1001770:intron 35.0%
AATAAAACCCTCTTGCATCA+GGG - chr6_4:85642611-85642630 Msa1001770:intron 35.0%
!! GTTGAATTGATAGTGCAACA+TGG + chr6_4:85642663-85642682 None:intergenic 35.0%
TACTTATTTCGGTATCACAG+TGG - chr6_4:85642719-85642738 Msa1001770:intron 35.0%
TAACTTCTGTAACATCAAGG+TGG + chr6_4:85642764-85642783 None:intergenic 35.0%
!! TACTTTTGGGAGTCTATTGT+GGG + chr6_4:85642952-85642971 None:intergenic 35.0%
!! ATACTTTTGGGAGTCTATTG+TGG + chr6_4:85642953-85642972 None:intergenic 35.0%
!! ACTCCCAAAAGTATCCAATA+CGG - chr6_4:85642959-85642978 Msa1001770:intron 35.0%
CCAAAAAGCTTAAACCGTAT+TGG + chr6_4:85642976-85642995 None:intergenic 35.0%
! CCAATACGGTTTAAGCTTTT+TGG - chr6_4:85642973-85642992 Msa1001770:intron 35.0%
ACCAAACACATTAGTATTCG+AGG - chr6_4:85643518-85643537 Msa1001770:intron 35.0%
TCCTCGAATACTAATGTGTT+TGG + chr6_4:85643522-85643541 None:intergenic 35.0%
AAACACATTAGTATTCGAGG+AGG - chr6_4:85643521-85643540 Msa1001770:intron 35.0%
! TCTCAACTGGGTTGAATTTA+TGG - chr6_4:85643551-85643570 Msa1001770:intron 35.0%
GAGTTTCAATCGAAGATCAA+AGG + chr6_4:85644198-85644217 None:intergenic 35.0%
ACAAATATCAATACGTCCAG+TGG + chr6_4:85644347-85644366 None:intergenic 35.0%
CTATAATTGTTTGTCGACAC+TGG - chr6_4:85644680-85644699 Msa1001770:intron 35.0%
! ATTGTCTGAAGCAAAATAGG+GGG + chr6_4:85644758-85644777 None:intergenic 35.0%
! CATTGTCTGAAGCAAAATAG+GGG + chr6_4:85644759-85644778 None:intergenic 35.0%
AACATCTTTGATTCTGAGCA+GGG + chr6_4:85644872-85644891 None:intergenic 35.0%
TATCTATGTTACCGATGTGA+AGG + chr6_4:85644958-85644977 None:intergenic 35.0%
! AACTATATGTGTTTCTGCCA+AGG - chr6_4:85645067-85645086 Msa1001770:intron 35.0%
! TGTCTTGAATTTTGAGCTGT+GGG + chr6_4:85645312-85645331 None:intergenic 35.0%
! ATGTCTTGAATTTTGAGCTG+TGG + chr6_4:85645313-85645332 None:intergenic 35.0%
ACTTATATGCGAATTGTGGT+CGG - chr6_4:85645591-85645610 Msa1001770:intron 35.0%
CATGTGTGGAAATTAATGCA+AGG + chr6_4:85645673-85645692 None:intergenic 35.0%
! TCTTTTGTGTGAATCATGTG+TGG + chr6_4:85645687-85645706 None:intergenic 35.0%
! CTCATCGATAAAATGATGGA+AGG - chr6_4:85645746-85645765 Msa1001770:intron 35.0%
TTTAGTGGCTATTCCATCAT+GGG - chr6_4:85646013-85646032 Msa1001770:intron 35.0%
TCACGCTATATATAGGTACT+TGG - chr6_4:85646131-85646150 Msa1001770:intron 35.0%
TTTGGTAGAAACCAGAATTC+TGG + chr6_4:85646191-85646210 None:intergenic 35.0%
ACCTAGGTCCTACATTAATT+TGG - chr6_4:85646237-85646256 Msa1001770:intron 35.0%
CCTAGGTCCTACATTAATTT+GGG - chr6_4:85646238-85646257 Msa1001770:intron 35.0%
! CTAGGTCCTACATTAATTTG+GGG - chr6_4:85646239-85646258 Msa1001770:intron 35.0%
AAGGAACCCCAAATTAATGT+AGG + chr6_4:85646248-85646267 None:intergenic 35.0%
! CAAGGCATTAGACAAGATAA+TGG + chr6_4:85646286-85646305 None:intergenic 35.0%
CATTATCTTGTCTAATGCCT+TGG - chr6_4:85646284-85646303 Msa1001770:intron 35.0%
ATGCCCATGTCATATCTATA+TGG - chr6_4:85646360-85646379 Msa1001770:intron 35.0%
TGCCCATGTCATATCTATAT+GGG - chr6_4:85646361-85646380 Msa1001770:intron 35.0%
CTTCCCATATAGATATGACA+TGG + chr6_4:85646367-85646386 None:intergenic 35.0%
TCTATATGGGAAGAAGTTTG+TGG - chr6_4:85646374-85646393 Msa1001770:intron 35.0%
CTATATGGGAAGAAGTTTGT+GGG - chr6_4:85646375-85646394 Msa1001770:intron 35.0%
GATTTGATTAGGTCAGTGAT+AGG + chr6_4:85646402-85646421 None:intergenic 35.0%
CTTCTCTCAGTGATTTGATT+AGG + chr6_4:85646413-85646432 None:intergenic 35.0%
AACCTTAGCAATAGTATTCC+GGG + chr6_4:85646478-85646497 None:intergenic 35.0%
TGAAAATGGCATGCAATTTC+AGG - chr6_4:85646598-85646617 Msa1001770:intron 35.0%
ATGGGGATTTCTTTATCATG+TGG - chr6_4:85646661-85646680 Msa1001770:intron 35.0%
TGGGGATTTCTTTATCATGT+GGG - chr6_4:85646662-85646681 Msa1001770:intron 35.0%
AATTAATCATGTGCGTTACG+AGG - chr6_4:85646745-85646764 Msa1001770:intron 35.0%
AACAGTAGATACCTTTGCAT+TGG - chr6_4:85646773-85646792 Msa1001770:intron 35.0%
!! TATTATGTTTGATAGCGCGT+TGG - chr6_4:85646810-85646829 Msa1001770:intron 35.0%
!! ATTATGTTTGATAGCGCGTT+GGG - chr6_4:85646811-85646830 Msa1001770:intron 35.0%
ATGTACAGACACATATGCAA+AGG - chr6_4:85647426-85647445 Msa1001770:intron 35.0%
AAAATGCCAACTGATCTTGT+TGG - chr6_4:85647636-85647655 Msa1001770:intron 35.0%
! TTTTCTCCAACAAGATCAGT+TGG + chr6_4:85647645-85647664 None:intergenic 35.0%
AGCCTCAAAATTCTTACAGT+TGG - chr6_4:85647745-85647764 Msa1001770:intron 35.0%
CATGCATGCATAGAATTAGT+TGG + chr6_4:85647847-85647866 None:intergenic 35.0%
GTGTCTTCAAAGAATTCAGT+TGG + chr6_4:85647889-85647908 None:intergenic 35.0%
!! TAGCTTTGTGAAGAGATACA+GGG + chr6_4:85648072-85648091 None:intergenic 35.0%
!! TTTCCTTAGCTCTATGAGTT+GGG + chr6_4:85648097-85648116 None:intergenic 35.0%
!! ATTTCCTTAGCTCTATGAGT+TGG + chr6_4:85648098-85648117 None:intergenic 35.0%
AGAGTAGAAGATAGAATACC+AGG + chr6_4:85648180-85648199 None:intergenic 35.0%
ATCAATTCACAGATGGAAGA+TGG - chr6_4:85648801-85648820 Msa1001770:intron 35.0%
CTACACTAATTACCTGTTGT+GGG + chr6_4:85648833-85648852 None:intergenic 35.0%
TCGATATGATGAGTAGTTCA+GGG + chr6_4:85648974-85648993 None:intergenic 35.0%
TTCGATATGATGAGTAGTTC+AGG + chr6_4:85648975-85648994 None:intergenic 35.0%
ATCGAAACATCTTTCCCATA+TGG - chr6_4:85648989-85649008 Msa1001770:intron 35.0%
TCGAAACATCTTTCCCATAT+GGG - chr6_4:85648990-85649009 Msa1001770:intron 35.0%
TGGAAGTTGAAGATAGCAGA+AGG - chr6_4:85639210-85639229 Msa1001770:three_prime_UTR 40.0%
AAGTTGAAGATAGCAGAAGG+AGG - chr6_4:85639213-85639232 Msa1001770:three_prime_UTR 40.0%
TGGGAATTTGATCCAAATGC+AGG - chr6_4:85639279-85639298 Msa1001770:three_prime_UTR 40.0%
TCAATCTCAGCATGTTCTTG+TGG + chr6_4:85639309-85639328 None:intergenic 40.0%
! GAGGTCAGAACTTTGTTTGA+TGG + chr6_4:85639367-85639386 None:intergenic 40.0%
ATACCTGCATTCTCATCAAG+AGG + chr6_4:85639386-85639405 None:intergenic 40.0%
! GCATAACCCATTTTGAACTC+TGG + chr6_4:85639561-85639580 None:intergenic 40.0%
TGCTATCAAGAGATGACCTA+AGG - chr6_4:85639578-85639597 Msa1001770:intron 40.0%
GCTATCAAGAGATGACCTAA+GGG - chr6_4:85639579-85639598 Msa1001770:intron 40.0%
!! TCTGCTCTCATTGAGTTGAT+TGG + chr6_4:85639922-85639941 None:intergenic 40.0%
ATCAACTCAATGAGAGCAGA+CGG - chr6_4:85639922-85639941 Msa1001770:intron 40.0%
!!! CTTCTGCCATTTTGTATCAC+AGG + chr6_4:85639959-85639978 None:intergenic 40.0%
!! CTCATGCTCAGCTATTTTGA+TGG - chr6_4:85640158-85640177 Msa1001770:intron 40.0%
!!! TATTTTTTTTGGTGGTGGCC+GGG - chr6_4:85640215-85640234 Msa1001770:intron 40.0%
! TGAGCTTAACTCAGTTGGTA+TGG + chr6_4:85640277-85640296 None:intergenic 40.0%
TTCACAAGCCACTGTTATGT+AGG + chr6_4:85640388-85640407 None:intergenic 40.0%
TACCAAGTATGAGGCAATGA+AGG + chr6_4:85640719-85640738 None:intergenic 40.0%
ACGGGGACTTAAAATGCTAA+CGG - chr6_4:85641367-85641386 Msa1001770:intron 40.0%
CATCTTAACGTACGGTATTG+AGG + chr6_4:85641570-85641589 None:intergenic 40.0%
!! GTACTTACCATCGACTTCAT+AGG - chr6_4:85641676-85641695 Msa1001770:CDS 40.0%
GGACACGATCTAGTTAATCT+AGG + chr6_4:85641726-85641745 None:intergenic 40.0%
TTGGCACGTAAAGTTACGTA+TGG - chr6_4:85641817-85641836 Msa1001770:intron 40.0%
TGTGGAAGAGATATAGCAAG+GGG - chr6_4:85641917-85641936 Msa1001770:intron 40.0%
CTCTTAGGCTACATAAGTTC+TGG + chr6_4:85642471-85642490 None:intergenic 40.0%
CAGAACTTATGTAGCCTAAG+AGG - chr6_4:85642079-85642098 Msa1001770:CDS 40.0%
!!! CCGGAAACCCTTATTTTGAT+AGG - chr6_4:85642157-85642176 Msa1001770:intron 40.0%
CAGAACTTATGTAGCCTAAG+AGG + chr6_4:85642079-85642098 None:intergenic 40.0%
ATAAAACCCTCTTGCATCAG+GGG - chr6_4:85642612-85642631 Msa1001770:intron 40.0%
CAGTGGATATGTCAGAATCA+CGG - chr6_4:85642736-85642755 Msa1001770:intron 40.0%
GTTAAAGAGATGGAGGTTCA+AGG - chr6_4:85643573-85643592 Msa1001770:intron 40.0%
AGTTTAACTGCTGGTGGAAT+GGG + chr6_4:85644024-85644043 None:intergenic 40.0%
TCTTCTCTCAGTTTAACTGC+TGG + chr6_4:85644033-85644052 None:intergenic 40.0%
TCCTCAATTCAAGCTCATGA+TGG - chr6_4:85644111-85644130 Msa1001770:intron 40.0%
! TTGCTGATATTGATGACCAC+TGG - chr6_4:85644328-85644347 Msa1001770:CDS 40.0%
! TCTAGGACCTCAACATAAGA+AGG - chr6_4:85644428-85644447 Msa1001770:intron 40.0%
AGGAATGCAAATGTGAGTGA+TGG + chr6_4:85644717-85644736 None:intergenic 40.0%
GGAAGGAGTCAAAGTAGAAA+AGG + chr6_4:85644737-85644756 None:intergenic 40.0%
GGCAAAAATCCCTTTAGATG+AGG - chr6_4:85644838-85644857 Msa1001770:intron 40.0%
ACATCTTTGATTCTGAGCAG+GGG + chr6_4:85644871-85644890 None:intergenic 40.0%
CAACATCTTTGATTCTGAGC+AGG + chr6_4:85644873-85644892 None:intergenic 40.0%
TAAAGCTGCTGCATAGACAT+AGG + chr6_4:85645096-85645115 None:intergenic 40.0%
!! AGCAGCTTTAGAGTATACAG+AGG - chr6_4:85645106-85645125 Msa1001770:intron 40.0%
GATCTGATATCAACTTCCTC+TGG - chr6_4:85645281-85645300 Msa1001770:intron 40.0%
AGGTTTGGATAGACTAAGTG+AGG - chr6_4:85645487-85645506 Msa1001770:intron 40.0%
TTCTGTCACCTCATCACAAA+TGG + chr6_4:85645837-85645856 None:intergenic 40.0%
TTGTGCTATGACCCTCTATA+TGG + chr6_4:85645881-85645900 None:intergenic 40.0%
CATTGAGCTATATTGCACTG+AGG - chr6_4:85645913-85645932 Msa1001770:intron 40.0%
CAATGGAGAGATGCAGAAAT+TGG - chr6_4:85645973-85645992 Msa1001770:intron 40.0%
AGAAATTGGATCCTTGACCA+TGG - chr6_4:85645987-85646006 Msa1001770:intron 40.0%
GTTTAGTGGCTATTCCATCA+TGG - chr6_4:85646012-85646031 Msa1001770:intron 40.0%
TTAGTGGCTATTCCATCATG+GGG - chr6_4:85646014-85646033 Msa1001770:intron 40.0%
AGGTACTTGGAGTTTATGAG+TGG - chr6_4:85646144-85646163 Msa1001770:intron 40.0%
! GGATGAATAGGGGTGAATTT+TGG + chr6_4:85646209-85646228 None:intergenic 40.0%
AAATTCACCCCTATTCATCC+AGG - chr6_4:85646209-85646228 Msa1001770:intron 40.0%
CCCAAATTAATGTAGGACCT+AGG + chr6_4:85646241-85646260 None:intergenic 40.0%
! GGAAAATGTTGTGCTACTGT+CGG - chr6_4:85646328-85646347 Msa1001770:intron 40.0%
AAATCAACTGGAACAAAGCC+CGG - chr6_4:85646457-85646476 Msa1001770:intron 40.0%
AAATGGCATGCAATTTCAGG+AGG - chr6_4:85646601-85646620 Msa1001770:intron 40.0%
AAAGGCCAGCAATTCAGAAA+AGG + chr6_4:85646692-85646711 None:intergenic 40.0%
! TTCTGTCTAAGCTTGGTGAA+AGG + chr6_4:85646710-85646729 None:intergenic 40.0%
TTTCACCAAGCTTAGACAGA+AGG - chr6_4:85646709-85646728 Msa1001770:intron 40.0%
TAATGCCTTCTGTCTAAGCT+TGG + chr6_4:85646717-85646736 None:intergenic 40.0%
TCTCTACACTTCCAATGCAA+AGG + chr6_4:85646787-85646806 None:intergenic 40.0%
! TTGCATTGGAAGTGTAGAGA+AGG - chr6_4:85646787-85646806 Msa1001770:intron 40.0%
AGTTTGTATGCCTCTGAGTT+CGG + chr6_4:85646845-85646864 None:intergenic 40.0%
AGAAGATGGCTTGAAAATCC+AGG - chr6_4:85646901-85646920 Msa1001770:intron 40.0%
TGTAACGTGAGTGAAGAGTA+TGG - chr6_4:85647327-85647346 Msa1001770:intron 40.0%
! AAGAGTATGGTCCTACACTT+CGG - chr6_4:85647340-85647359 Msa1001770:intron 40.0%
! TGGATTTTCAACTACCTGTG+AGG + chr6_4:85647388-85647407 None:intergenic 40.0%
CAGGTAGTTGAAAATCCATC+CGG - chr6_4:85647390-85647409 Msa1001770:intron 40.0%
! GTACATTGCTTTGAACTCAC+CGG + chr6_4:85647412-85647431 None:intergenic 40.0%
ACATTCTCAATGCATGACCA+AGG - chr6_4:85647456-85647475 Msa1001770:intron 40.0%
TAAAACCTTGAGTCCTTCTG+CGG + chr6_4:85647502-85647521 None:intergenic 40.0%
! CATTTTTGACAACAGGAGTG+CGG + chr6_4:85647622-85647641 None:intergenic 40.0%
! CAGTTGGCATTTTTGACAAC+AGG + chr6_4:85647629-85647648 None:intergenic 40.0%
! TTGAAGACACACTGATTGAG+AGG - chr6_4:85647899-85647918 Msa1001770:intron 40.0%
! TGAAGACACACTGATTGAGA+GGG - chr6_4:85647900-85647919 Msa1001770:intron 40.0%
AATAGGTATGTTGAGTGCAC+TGG - chr6_4:85648032-85648051 Msa1001770:intron 40.0%
!! GTAGCTTTGTGAAGAGATAC+AGG + chr6_4:85648073-85648092 None:intergenic 40.0%
GAAAACACACAAAACCCTGA+TGG - chr6_4:85648152-85648171 Msa1001770:intron 40.0%
TAGAATACCAGGATCCATCA+GGG + chr6_4:85648169-85648188 None:intergenic 40.0%
ATAGAATACCAGGATCCATC+AGG + chr6_4:85648170-85648189 None:intergenic 40.0%
TAGTACATACACTACTCCAC+AGG - chr6_4:85648297-85648316 Msa1001770:intron 40.0%
!! TGGGGAATTTGCTATACGTA+TGG - chr6_4:85648329-85648348 Msa1001770:intron 40.0%
! TTTGCTATACGTATGGCACT+TGG - chr6_4:85648336-85648355 Msa1001770:intron 40.0%
TTTGCAAGGAAGGACTGTTA+CGG + chr6_4:85648400-85648419 None:intergenic 40.0%
! TGACAAGCTTTTTGCAAGGA+AGG + chr6_4:85648410-85648429 None:intergenic 40.0%
TTGTCAAAGCAGCTTCCTAA+TGG - chr6_4:85648437-85648456 Msa1001770:intron 40.0%
TGTCAAAGCAGCTTCCTAAT+GGG - chr6_4:85648438-85648457 Msa1001770:intron 40.0%
AATTTGCACGGTTGTCTTCT+AGG + chr6_4:85648583-85648602 None:intergenic 40.0%
AACTTCATTCCACGGTGTAT+GGG + chr6_4:85648777-85648796 None:intergenic 40.0%
TAACTTCATTCCACGGTGTA+TGG + chr6_4:85648778-85648797 None:intergenic 40.0%
GCTACACTAATTACCTGTTG+TGG + chr6_4:85648834-85648853 None:intergenic 40.0%
ATGCAACTACAGGAGATAAC+AGG - chr6_4:85648928-85648947 Msa1001770:intron 40.0%
GAATTTGTGCAGACAAGACT+CGG + chr6_4:85649035-85649054 None:intergenic 40.0%
ACAATTCAAGGTGCAGCATT+TGG + chr6_4:85649057-85649076 None:intergenic 40.0%
ATTGTAACTACTCACTACCC+AGG - chr6_4:85649072-85649091 Msa1001770:CDS 40.0%
TGTACAACCAATTAGCACCT+GGG + chr6_4:85649092-85649111 None:intergenic 40.0%
AAGATAGCAGAAGGAGGAGA+AGG - chr6_4:85639219-85639238 Msa1001770:three_prime_UTR 45.0%
AGATAGCAGAAGGAGGAGAA+GGG - chr6_4:85639220-85639239 Msa1001770:three_prime_UTR 45.0%
ACTTCATAGGACGTCAACAC+TGG - chr6_4:85639259-85639278 Msa1001770:three_prime_UTR 45.0%
CTTCATAGGACGTCAACACT+GGG - chr6_4:85639260-85639279 Msa1001770:three_prime_UTR 45.0%
TCTTGTGGTGTTCCTGCATT+TGG + chr6_4:85639294-85639313 None:intergenic 45.0%
TGACCTCTTGATGAGAATGC+AGG - chr6_4:85639380-85639399 Msa1001770:CDS 45.0%
! CGAGCTTAACTCAGTTGGTA+AGG - chr6_4:85639749-85639768 Msa1001770:intron 45.0%
TCAACTCAATGAGAGCAGAC+GGG - chr6_4:85639923-85639942 Msa1001770:intron 45.0%
!!! ATTTTTTTTGGTGGTGGCCG+GGG - chr6_4:85640216-85640235 Msa1001770:intron 45.0%
!!! TAGGCCGCTTTTATTCTGTC+TGG + chr6_4:85640369-85640388 None:intergenic 45.0%
AAAAGCGGCCTACATAACAG+TGG - chr6_4:85640377-85640396 Msa1001770:intron 45.0%
CTCCTTCATTGCCTCATACT+TGG - chr6_4:85640714-85640733 Msa1001770:CDS 45.0%
!! ATATAGCAAGGGGTTGATGC+AGG - chr6_4:85641927-85641946 Msa1001770:intron 45.0%
CTCTCAATTCTCGTGGATTC+CGG - chr6_4:85642138-85642157 Msa1001770:intron 45.0%
! CAGTTGGTATCAGAGCAGTA+CGG + chr6_4:85642272-85642291 None:intergenic 45.0%
TGATACCAACTGACGCAGTA+CGG - chr6_4:85642280-85642299 Msa1001770:intron 45.0%
!! CTCTCAATTCTGGTGGATTC+TGG + chr6_4:85642414-85642433 None:intergenic 45.0%
! GGTTGTAGCATTTCGAGTCT+GGG + chr6_4:85642642-85642661 None:intergenic 45.0%
! TGGTTGTAGCATTTCGAGTC+TGG + chr6_4:85642643-85642662 None:intergenic 45.0%
AGGAGGTTGAGTATCTCAAC+TGG - chr6_4:85643538-85643557 Msa1001770:intron 45.0%
GGAGGTTGAGTATCTCAACT+GGG - chr6_4:85643539-85643558 Msa1001770:intron 45.0%
GTTTAACTGCTGGTGGAATG+GGG + chr6_4:85644023-85644042 None:intergenic 45.0%
CAGTTTAACTGCTGGTGGAA+TGG + chr6_4:85644025-85644044 None:intergenic 45.0%
TCTCTCAGTTTAACTGCTGG+TGG + chr6_4:85644030-85644049 None:intergenic 45.0%
GCCATCATGAGCTTGAATTG+AGG + chr6_4:85644115-85644134 None:intergenic 45.0%
AAAGGGACTTCACTCACCAA+TGG + chr6_4:85644180-85644199 None:intergenic 45.0%
AGGTCCTAGAACCTCATCAA+GGG + chr6_4:85644418-85644437 None:intergenic 45.0%
!!! GTTTTGAAGAGGGGGATGAA+TGG + chr6_4:85644661-85644680 None:intergenic 45.0%
! TGCAAATGTGAGTGATGGTG+AGG + chr6_4:85644712-85644731 None:intergenic 45.0%
! TCTGAAGCAAAATAGGGGGA+AGG + chr6_4:85644754-85644773 None:intergenic 45.0%
GGAAGGGATCCTCATCTAAA+GGG + chr6_4:85644850-85644869 None:intergenic 45.0%
TTTGATTCTGAGCAGGGGAA+GGG + chr6_4:85644866-85644885 None:intergenic 45.0%
TACCGATGTGAAGGAGGATA+CGG + chr6_4:85644949-85644968 None:intergenic 45.0%
CTATGTTACCGATGTGAAGG+AGG + chr6_4:85644955-85644974 None:intergenic 45.0%
TGCATAGACATAGGCTACCT+TGG + chr6_4:85645087-85645106 None:intergenic 45.0%
ATGAGGTGACAGAACGAAGA+TGG - chr6_4:85645843-85645862 Msa1001770:intron 45.0%
!! ACAGAACGAAGATGGTGGAT+GGG - chr6_4:85645851-85645870 Msa1001770:intron 45.0%
TGGATGGGGATTCCATATAG+AGG - chr6_4:85645866-85645885 Msa1001770:intron 45.0%
GGATGGGGATTCCATATAGA+GGG - chr6_4:85645867-85645886 Msa1001770:intron 45.0%
GAGGGTCATAGCACAATGTT+TGG - chr6_4:85645885-85645904 Msa1001770:intron 45.0%
TATATTGCACTGAGGCTGCT+TGG - chr6_4:85645921-85645940 Msa1001770:intron 45.0%
ACCTGAAGATGGTGAAGACA+AGG - chr6_4:85645950-85645969 Msa1001770:intron 45.0%
AGATGGTGAAGACAAGGCAA+TGG - chr6_4:85645956-85645975 Msa1001770:intron 45.0%
AATTGGATCCTTGACCATGG+TGG - chr6_4:85645990-85646009 Msa1001770:intron 45.0%
GAATAGCCACTAAACCACCA+TGG + chr6_4:85646007-85646026 None:intergenic 45.0%
TTCCATCATGGGGAAAGTTC+TGG - chr6_4:85646024-85646043 Msa1001770:intron 45.0%
TCCATCATGGGGAAAGTTCT+GGG - chr6_4:85646025-85646044 Msa1001770:intron 45.0%
ATCCACTTCCACCAGAATTC+TGG - chr6_4:85646177-85646196 Msa1001770:intron 45.0%
AACCAGAATTCTGGTGGAAG+TGG + chr6_4:85646182-85646201 None:intergenic 45.0%
GGTAGAAACCAGAATTCTGG+TGG + chr6_4:85646188-85646207 None:intergenic 45.0%
GTATGCACCTGGATGAATAG+GGG + chr6_4:85646219-85646238 None:intergenic 45.0%
GGTATGCACCTGGATGAATA+GGG + chr6_4:85646220-85646239 None:intergenic 45.0%
AGGTATGCACCTGGATGAAT+AGG + chr6_4:85646221-85646240 None:intergenic 45.0%
ATTCATCCAGGTGCATACCT+AGG - chr6_4:85646221-85646240 Msa1001770:intron 45.0%
AGCCCGGAATACTATTGCTA+AGG - chr6_4:85646473-85646492 Msa1001770:intron 45.0%
TGCTAAGGTTTGTACGTGTG+TGG - chr6_4:85646488-85646507 Msa1001770:intron 45.0%
! GAGAGCCTTTTCTGAATTGC+TGG - chr6_4:85646684-85646703 Msa1001770:intron 45.0%
GTTTGTATGCCTCTGAGTTC+GGG + chr6_4:85646844-85646863 None:intergenic 45.0%
CCAGAAGTAATCAGGGATTC+GGG + chr6_4:85646876-85646895 None:intergenic 45.0%
GCCAGAAGTAATCAGGGATT+CGG + chr6_4:85646877-85646896 None:intergenic 45.0%
CTGCAAGCCAGAAGTAATCA+GGG + chr6_4:85646883-85646902 None:intergenic 45.0%
TCTGCAAGCCAGAAGTAATC+AGG + chr6_4:85646884-85646903 None:intergenic 45.0%
!! TACTTCTGGCTTGCAGAAGA+TGG - chr6_4:85646887-85646906 Msa1001770:intron 45.0%
GAAATGTTGCAGGCCTTAGT+TGG + chr6_4:85646953-85646972 None:intergenic 45.0%
!! AGAGCTTTGGGTGTCAAATG+TGG - chr6_4:85647271-85647290 Msa1001770:intron 45.0%
!! GAGCTTTGGGTGTCAAATGT+GGG - chr6_4:85647272-85647291 Msa1001770:intron 45.0%
TCATGTGCTTTCCGAAGTGT+AGG + chr6_4:85647354-85647373 None:intergenic 45.0%
! GAAAGCACATGACTTCCTGA+AGG - chr6_4:85647362-85647381 Msa1001770:intron 45.0%
! ATTGCTTTGAACTCACCGGA+TGG + chr6_4:85647408-85647427 None:intergenic 45.0%
GACACATATGCAAAGGATCG+TGG - chr6_4:85647433-85647452 Msa1001770:intron 45.0%
TCTCAATGCATGACCAAGGT+TGG - chr6_4:85647460-85647479 Msa1001770:intron 45.0%
!!! AATTTTGAGGCTCCCAAGCA+GGG + chr6_4:85647737-85647756 None:intergenic 45.0%
ACACCCAACTCATAGAGCTA+AGG - chr6_4:85648091-85648110 Msa1001770:intron 45.0%
CATACACTACTCCACAGGTA+CGG - chr6_4:85648302-85648321 Msa1001770:intron 45.0%
GTAGAGGGACTAACAACTTG+TGG - chr6_4:85648365-85648384 Msa1001770:intron 45.0%
GTCAAAGCAGCTTCCTAATG+GGG - chr6_4:85648439-85648458 Msa1001770:intron 45.0%
TCAAAGCAGCTTCCTAATGG+GGG - chr6_4:85648440-85648459 Msa1001770:intron 45.0%
!! TGGGCTTTGTTGTCCCTTAT+CGG - chr6_4:85648617-85648636 Msa1001770:intron 45.0%
AGATGGAGATTTCCCACAAC+AGG - chr6_4:85648818-85648837 Msa1001770:intron 45.0%
ATCTTTCCCATATGGGCTCT+GGG - chr6_4:85648997-85649016 Msa1001770:intron 45.0%
GTGTACAACCAATTAGCACC+TGG + chr6_4:85649093-85649112 None:intergenic 45.0%
!!! TTAAAATTTGTAATTTTTTA+TGG + chr6_4:85640438-85640457 None:intergenic 5.0%
!!! TTAGAAAAAATTTATTTTAT+GGG + chr6_4:85642907-85642926 None:intergenic 5.0%
!!! TTTCAAATTTTTAAAAAATA+GGG + chr6_4:85643226-85643245 None:intergenic 5.0%
!!! ATTTCAAATTTTTAAAAAAT+AGG + chr6_4:85643227-85643246 None:intergenic 5.0%
!!! AAAATTTGAAATTTATTAAA+AGG - chr6_4:85643235-85643254 Msa1001770:intron 5.0%
!! AATTTAATATAAATTAATCA+TGG - chr6_4:85647163-85647182 Msa1001770:intron 5.0%
AAGGTACGAGGTTGAAACCC+CGG + chr6_4:85640236-85640255 None:intergenic 50.0%
CCTCGTGAGCTTAACTCAGT+TGG + chr6_4:85640282-85640301 None:intergenic 50.0%
CCAACTGAGTTAAGCTCACG+AGG - chr6_4:85640279-85640298 Msa1001770:CDS 50.0%
GTTAGTGTTCGTCTGAACGC+TGG - chr6_4:85643679-85643698 Msa1001770:intron 50.0%
TTCAAGCTCATGATGGCCAC+TGG - chr6_4:85644118-85644137 Msa1001770:intron 50.0%
GAGGTCCTAGAACCTCATCA+AGG + chr6_4:85644419-85644438 None:intergenic 50.0%
GGGAAGGGATCCTCATCTAA+AGG + chr6_4:85644851-85644870 None:intergenic 50.0%
CTTTGATTCTGAGCAGGGGA+AGG + chr6_4:85644867-85644886 None:intergenic 50.0%
CTCCGTATCCTCCTTCACAT+CGG - chr6_4:85644944-85644963 Msa1001770:intron 50.0%
! TGAGCTGTGGGTTATTCCAG+AGG + chr6_4:85645300-85645319 None:intergenic 50.0%
TGCGGTCATCATTGTGCACA+AGG - chr6_4:85645526-85645545 Msa1001770:intron 50.0%
AGGTGACAGAACGAAGATGG+TGG - chr6_4:85645846-85645865 Msa1001770:intron 50.0%
!! GACAGAACGAAGATGGTGGA+TGG - chr6_4:85645850-85645869 Msa1001770:intron 50.0%
!! CAGAACGAAGATGGTGGATG+GGG - chr6_4:85645852-85645871 Msa1001770:intron 50.0%
CTTGGAGAAGGACCTGAAGA+TGG - chr6_4:85645939-85645958 Msa1001770:intron 50.0%
GCCTTGTCTTCACCATCTTC+AGG + chr6_4:85645954-85645973 None:intergenic 50.0%
CCACTAAACCACCATGGTCA+AGG + chr6_4:85646001-85646020 None:intergenic 50.0%
CCTTGACCATGGTGGTTTAG+TGG - chr6_4:85645998-85646017 Msa1001770:intron 50.0%
ACCCAGAACTTTCCCCATGA+TGG + chr6_4:85646029-85646048 None:intergenic 50.0%
!! ATGGGGAAAGTTCTGGGTCA+CGG - chr6_4:85646031-85646050 Msa1001770:intron 50.0%
CTTGGAGTTTATGAGTGGCG+AGG - chr6_4:85646149-85646168 Msa1001770:intron 50.0%
CCCGAATCCCTGATTACTTC+TGG - chr6_4:85646873-85646892 Msa1001770:intron 50.0%
AGTCAGAGACTTGCCAACCT+TGG + chr6_4:85647476-85647495 None:intergenic 50.0%
CATTACTGCTCTGTAGCGAG+AGG + chr6_4:85647707-85647726 None:intergenic 50.0%
CTCTCGCTACAGAGCAGTAA+TGG - chr6_4:85647705-85647724 Msa1001770:intron 50.0%
TCGCTACAGAGCAGTAATGG+CGG - chr6_4:85647708-85647727 Msa1001770:intron 50.0%
!!! GAATTTTGAGGCTCCCAAGC+AGG + chr6_4:85647738-85647757 None:intergenic 50.0%
! CACAAAACCCTGATGGATCC+TGG - chr6_4:85648159-85648178 Msa1001770:intron 50.0%
!! TGGCACTTGGTTTGCTGTAG+AGG - chr6_4:85648349-85648368 Msa1001770:intron 50.0%
!! GGCACTTGGTTTGCTGTAGA+GGG - chr6_4:85648350-85648369 Msa1001770:intron 50.0%
CAAAGCAGCTTCCTAATGGG+GGG - chr6_4:85648441-85648460 Msa1001770:intron 50.0%
TTGTTGTCCCTTATCGGTGC+AGG - chr6_4:85648623-85648642 Msa1001770:intron 50.0%
TGTTGTCCCTTATCGGTGCA+GGG - chr6_4:85648624-85648643 Msa1001770:intron 50.0%
ATTCCACGGTGTATGGGTGT+AGG + chr6_4:85648771-85648790 None:intergenic 50.0%
CATCTTTCCCATATGGGCTC+TGG - chr6_4:85648996-85649015 Msa1001770:intron 50.0%
TACTCTCCCAGAGCCCATAT+GGG + chr6_4:85649006-85649025 None:intergenic 50.0%
ATACTCTCCCAGAGCCCATA+TGG + chr6_4:85649007-85649026 None:intergenic 50.0%
CTCACTACCCAGGTGCTAAT+TGG - chr6_4:85649082-85649101 Msa1001770:CDS 50.0%
CCAACTGAGTTAAGCTCGCG+AGG + chr6_4:85639747-85639766 None:intergenic 55.0%
CCTCGCGAGCTTAACTCAGT+TGG - chr6_4:85639744-85639763 Msa1001770:intron 55.0%
! CAGAGCAGTACGGAAGCGTA+GGG + chr6_4:85642262-85642281 None:intergenic 55.0%
! TCAGAGCAGTACGGAAGCGT+AGG + chr6_4:85642263-85642282 None:intergenic 55.0%
! TGACGCAGTACGGAAGCGTA+GGG - chr6_4:85642290-85642309 Msa1001770:intron 55.0%
AAACCCTCTTGCATCAGGGG+TGG - chr6_4:85642615-85642634 Msa1001770:intron 55.0%
AAAGGGCCAGCAGATTCTGC+AGG + chr6_4:85644144-85644163 None:intergenic 55.0%
TATGCGAATTGTGGTCGGCG+AGG - chr6_4:85645596-85645615 Msa1001770:intron 55.0%
GTAGGACCTAGGTATGCACC+TGG + chr6_4:85646230-85646249 None:intergenic 55.0%
GGTTGAAGACCCGAACTCAG+AGG - chr6_4:85646832-85646851 Msa1001770:intron 55.0%
TGACTTCCTGAAGGCCTCAC+AGG - chr6_4:85647371-85647390 Msa1001770:intron 55.0%
CAACTACCTGTGAGGCCTTC+AGG + chr6_4:85647380-85647399 None:intergenic 55.0%
CGCTACAGAGCAGTAATGGC+GGG - chr6_4:85647709-85647728 Msa1001770:intron 55.0%
!! TAATGGCGGGTTCCCTGCTT+GGG - chr6_4:85647722-85647741 Msa1001770:intron 55.0%
TACTCCACAGGTACGGCTGT+TGG - chr6_4:85648309-85648328 Msa1001770:intron 55.0%
ACTCCACAGGTACGGCTGTT+GGG - chr6_4:85648310-85648329 Msa1001770:intron 55.0%
! AACCTGCCCTGCACCGATAA+GGG + chr6_4:85648633-85648652 None:intergenic 55.0%
! TAACCTGCCCTGCACCGATA+AGG + chr6_4:85648634-85648653 None:intergenic 55.0%
CTAGCTTAGCTCCTGCCTCT+TGG - chr6_4:85648672-85648691 Msa1001770:intron 55.0%
GATCCTACACCCATACACCG+TGG - chr6_4:85648765-85648784 Msa1001770:intron 55.0%
CGCTTCCGTACTGCGTCAGT+TGG + chr6_4:85642288-85642307 None:intergenic 60.0%
! CTGACGCAGTACGGAAGCGT+AGG - chr6_4:85642289-85642308 Msa1001770:intron 60.0%
GGTCCACCCCTGATGCAAGA+GGG + chr6_4:85642621-85642640 None:intergenic 60.0%
CAGCAGATTCTGCAGGCCAG+TGG + chr6_4:85644137-85644156 None:intergenic 60.0%
! CACTGGCCTGCAGAATCTGC+TGG - chr6_4:85644135-85644154 Msa1001770:intron 60.0%
GCACTGAGGCTGCTTGGAGA+AGG - chr6_4:85645927-85645946 Msa1001770:intron 60.0%
GTCTCTGACTGCACCGCAGA+AGG - chr6_4:85647486-85647505 Msa1001770:intron 60.0%
CTGCACCGCAGAAGGACTCA+AGG - chr6_4:85647494-85647513 Msa1001770:intron 60.0%
!! GTAATGGCGGGTTCCCTGCT+TGG - chr6_4:85647721-85647740 Msa1001770:intron 60.0%
CTCCACAGGTACGGCTGTTG+GGG - chr6_4:85648311-85648330 Msa1001770:intron 60.0%
TTCCCCAACAGCCGTACCTG+TGG + chr6_4:85648316-85648335 None:intergenic 60.0%
AGCAGCTTCCTAATGGGGGG+TGG - chr6_4:85648444-85648463 Msa1001770:intron 60.0%
GCAGCTTCCTAATGGGGGGT+GGG - chr6_4:85648445-85648464 Msa1001770:intron 60.0%
CAGCTTCCTAATGGGGGGTG+GGG - chr6_4:85648446-85648465 Msa1001770:intron 60.0%
CTTTCTCCCCACCCCCCATT+AGG + chr6_4:85648455-85648474 None:intergenic 60.0%
GGGTCCACCCCTGATGCAAG+AGG + chr6_4:85642622-85642641 None:intergenic 65.0%
GTCCCTTATCGGTGCAGGGC+AGG - chr6_4:85648628-85648647 Msa1001770:intron 65.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 85639112 85649314 85639112 ID=Msa1001770;Name=Msa1001770
chr6_4 mRNA 85639112 85649314 85639112 ID=Msa1001770-mRNA-1;Parent=Msa1001770;Name=Msa1001770-mRNA-1;_AED=0.11;_eAED=0.11;_QI=95|1|1|1|1|1|15|243|762
chr6_4 exon 85639112 85639486 85639112 ID=Msa1001770-mRNA-1:exon:16900;Parent=Msa1001770-mRNA-1
chr6_4 exon 85639587 85639670 85639587 ID=Msa1001770-mRNA-1:exon:16899;Parent=Msa1001770-mRNA-1
chr6_4 exon 85639777 85639857 85639777 ID=Msa1001770-mRNA-1:exon:16898;Parent=Msa1001770-mRNA-1
chr6_4 exon 85639930 85640107 85639930 ID=Msa1001770-mRNA-1:exon:16897;Parent=Msa1001770-mRNA-1
chr6_4 exon 85640246 85640389 85640246 ID=Msa1001770-mRNA-1:exon:16896;Parent=Msa1001770-mRNA-1
chr6_4 exon 85640503 85640549 85640503 ID=Msa1001770-mRNA-1:exon:16895;Parent=Msa1001770-mRNA-1
chr6_4 exon 85640653 85640808 85640653 ID=Msa1001770-mRNA-1:exon:16894;Parent=Msa1001770-mRNA-1
chr6_4 exon 85640911 85641153 85640911 ID=Msa1001770-mRNA-1:exon:16893;Parent=Msa1001770-mRNA-1
chr6_4 exon 85641504 85641806 85641504 ID=Msa1001770-mRNA-1:exon:16892;Parent=Msa1001770-mRNA-1
chr6_4 exon 85641932 85642098 85641932 ID=Msa1001770-mRNA-1:exon:16891;Parent=Msa1001770-mRNA-1
chr6_4 exon 85642196 85642280 85642196 ID=Msa1001770-mRNA-1:exon:16890;Parent=Msa1001770-mRNA-1
chr6_4 exon 85642374 85642571 85642374 ID=Msa1001770-mRNA-1:exon:16889;Parent=Msa1001770-mRNA-1
chr6_4 exon 85643947 85644036 85643947 ID=Msa1001770-mRNA-1:exon:16888;Parent=Msa1001770-mRNA-1
chr6_4 exon 85644244 85644429 85644244 ID=Msa1001770-mRNA-1:exon:16887;Parent=Msa1001770-mRNA-1
chr6_4 exon 85649025 85649314 85649025 ID=Msa1001770-mRNA-1:exon:16886;Parent=Msa1001770-mRNA-1
chr6_4 five_prime_UTR 85649220 85649314 85649220 ID=Msa1001770-mRNA-1:five_prime_utr;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85649025 85649219 85649025 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85644244 85644429 85644244 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85643947 85644036 85643947 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85642374 85642571 85642374 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85642196 85642280 85642196 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85641932 85642098 85641932 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85641504 85641806 85641504 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85640911 85641153 85640911 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85640653 85640808 85640653 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85640503 85640549 85640503 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85640246 85640389 85640246 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85639930 85640107 85639930 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85639777 85639857 85639777 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85639587 85639670 85639587 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 CDS 85639355 85639486 85639355 ID=Msa1001770-mRNA-1:cds;Parent=Msa1001770-mRNA-1
chr6_4 three_prime_UTR 85639112 85639354 85639112 ID=Msa1001770-mRNA-1:three_prime_utr;Parent=Msa1001770-mRNA-1
Gene Sequence

>Msa1001770

ATGTGGAAGTTGAAGATAGCAGAAGGAGGAGAAGGGTTGATTTCTGTGAATAACTTCATAGGACGTCAACACTGGGAATTTGATCCAAATGCAGGAACACCACAAGAACATGCTGAGATTGAAAGGCTACGCATTCAATTCACCAAAAATAGATTCTCCATCAAACAAAGTTCTGACCTCTTGATGAGAATGCAGCTAAAAAAAGAGAATCAATGTAGCCCCATTCCACCAGCAGTTAAACTGAGAGAAGAAGATATCATAACAGGGGAAGCATTGATTACAACAATAAGAAGGGCTACAAGTTTCTATTCCTCAATTCAAGCTCATGATGGCCACTGGCCTGCAGAATCTGCTGGCCCTTTGTTTTTTGTTCAACCATTGGTAATGGCCCTCTATGTTACAGGATCCCTTGATGAGGTTCTAGGACCTCAACATAAGAAGGAAATTGTTCGGTATTTATATAATCACCAGAACGAAGATGGTGGATGGGGATTCCATATAGAGGGTCATAGCACAATGTTTGGATCAGCATTGAGCTATATTGCACTGAGGCTGCTTGGAGAAGGACCTGAAGATGGTGAAGACAAGGCAATGGAGAGATGCAGAAATTGGATCCTTGACCATGGTGGTTTAGTGGCTATTCCATCATGGGGAAAGTTCTGGGTCACGGTACTTGGAGTTTATGAGTGGCGAGGCTGCAATCCACTTCCACCAGAATTCTGGTTTCTACCAAAATTCACCCCTATTCATCCAGGGAAAATGTTGTGCTACTGTCGGTTAGTTTACATGCCCATGTCATATCTATATGGGAAGAAGTTTGTGGGCCCTATCACTGACCTAATCAAATCACTGAGAGAAGAACTGTACAATCAACCTTATGATCAAATCAACTGGAACAAAGCCCGGAATACTATTGCTAAGGAGGATCTGTACTACCCACATCCTATGATTCAAGATATGTTATGGGGATTTCTTTATCATGTGGGAGAGCCTTTTCTGAATTGCTGGCCTTTCACCAAGCTTAGACAGAAGGCATTAGAAATTGCAATTAATCATGTGCGTTACGAGGATGAGAACAGTAGATACCTTTGCATTGGAAGTGTAGAGAAGGTATTATGTTTGATAGCGCGTTGGGTTGAAGACCCGAACTCAGAGGCATACAAACTTCATTTAGCCCGAATCCCTGATTACTTCTGGCTTGCAGAAGATGGCTTGAAAATCCAGAGCTTTGGGTGTCAAATGTGGGATGCAGCATTTGCTATACAAGCAATACTTGCTTGTAACGTGAGTGAAGAGTATGGTCCTACACTTCGGAAAGCACATGACTTCCTGAAGGCCTCACAGGTAGTTGAAAATCCATCCGGTGAGTTCAAAGCAATGTACAGACACATATGCAAAGGATCGTGGACATTCTCAATGCATGACCAAGGTTGGCAAGTCTCTGACTGCACCGCAGAAGGACTCAAGGCCGCACTCCTGTTGTCAAAAATGCCAACTGATCTTGTTGGAGAAAAATTGGAAACAGAGCGACTCTACGATGCTGTTAATGTCATCCTCTCGCTACAGAGCAGTAATGGCGGGTTCCCTGCTTGGGAGCCTCAAAATTCTTACAGTTGGTTAGAGAAATTCAATCCAACTGAATTCTTTGAAGACACACTGATTGAGAGGGAGTATGTTGAGTGCACTGGTTCTGCAATGCAAGCCCTGTATCTCTTCACAAAGCTACACCCAACTCATAGAGCTAAGGAAATACATCACTGCCTTTCCAAAGCAATTCATTTCATTGAAAACACACAAAACCCTGATGGATCCTGGTACGGCTGTTGGGGAATTTGCTATACGTATGGCACTTGGTTTGCTGTAGAGGGACTAACAACTTGTGGAAAGAATTACCGTAACAGTCCTTCCTTGCAAAAAGCTTGTCAATTTTTATTGTCAAAGCAGCTTCCTAATGGGGGGTGGGGAGAAAGTTATTTGTCAAGCCAAAACAAGGTATATACAAACCTAGAAGACAACCGTGCAAATTTAGTTCAAACTTCGTGGGCTTTGTTGTCCCTTATCGGTGCAGGGCAGGCTGATATAGATCCTACACCCATACACCGTGGAATGAAGTTAATAATCAATTCACAGATGGAAGATGGAGATTTCCCACAACAGGAGATAACAGGAGTATTTATGAGGAATTGTACCCTGAACTACTCATCATATCGAAACATCTTTCCCATATGGGCTCTGGGAGAGTATCGTCACCGAGTCTTGTCTGCACAAATTCCAAATGCTGCACCTTGA
Protein sequence

>Msa1001770

MWKLKIAEGGEGLISVNNFIGRQHWEFDPNAGTPQEHAEIERLRIQFTKNRFSIKQSSDLLMRMQLKKENQCSPIPPAVKLREEDIITGEALITTIRRATSFYSSIQAHDGHWPAESAGPLFFVQPLVMALYVTGSLDEVLGPQHKKEIVRYLYNHQNEDGGWGFHIEGHSTMFGSALSYIALRLLGEGPEDGEDKAMERCRNWILDHGGLVAIPSWGKFWVTVLGVYEWRGCNPLPPEFWFLPKFTPIHPGKMLCYCRLVYMPMSYLYGKKFVGPITDLIKSLREELYNQPYDQINWNKARNTIAKEDLYYPHPMIQDMLWGFLYHVGEPFLNCWPFTKLRQKALEIAINHVRYEDENSRYLCIGSVEKVLCLIARWVEDPNSEAYKLHLARIPDYFWLAEDGLKIQSFGCQMWDAAFAIQAILACNVSEEYGPTLRKAHDFLKASQVVENPSGEFKAMYRHICKGSWTFSMHDQGWQVSDCTAEGLKAALLLSKMPTDLVGEKLETERLYDAVNVILSLQSSNGGFPAWEPQNSYSWLEKFNPTEFFEDTLIEREYVECTGSAMQALYLFTKLHPTHRAKEIHHCLSKAIHFIENTQNPDGSWYGCWGICYTYGTWFAVEGLTTCGKNYRNSPSLQKACQFLLSKQLPNGGWGESYLSSQNKVYTNLEDNRANLVQTSWALLSLIGAGQADIDPTPIHRGMKLIINSQMEDGDFPQQEITGVFMRNCTLNYSSYRNIFPIWALGEYRHRVLSAQIPNAAP*