AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0470340


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score

Find 33 sgRNAs with CRISPR-Local

Find 199 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTCAGTGAATACAGCATTC+TGG 0.307625 3_3:+72422905 None:intergenic
AGCTCATTCCCTCCGGTTAG+AGG 0.341992 3_3:+72420641 None:intergenic
TTGGTGCGCCATTTCCATTC+CGG 0.361769 3_3:-72420582 Msa0470340:CDS
AGAATGTTCATGTCCATGTT+TGG 0.385757 3_3:+72420677 None:intergenic
CTCTTGATGCTTCCTCTAAC+CGG 0.394494 3_3:-72420653 Msa0470340:CDS
TGTCTGCTGCAGACTTAGAT+TGG 0.399453 3_3:-72420601 Msa0470340:CDS
TGAACAGGATGGGGTGGCCG+AGG 0.409297 3_3:-72420715 Msa0470340:intron
TTCAGTGAATACAGCATTCT+GGG 0.409303 3_3:+72422906 None:intergenic
CGTTTGATCTCGATTGATCA+TGG 0.411796 3_3:+72420550 None:intergenic
CCAGTTGCAACCACGATTGT+TGG 0.419959 3_3:-72422965 Msa0470340:CDS
ATTATAGGTGGCTCCGTCCC+TGG 0.426772 3_3:-72421229 Msa0470340:intron
AAAGAAAACCGGAATGGAAA+TGG 0.435071 3_3:+72420574 None:intergenic
CCAACAATCGTGGTTGCAAC+TGG 0.460178 3_3:+72422965 None:intergenic
TTGATCATGGAAAAGAAAAC+CGG 0.489124 3_3:+72420563 None:intergenic
CTTCGTTGTGCAAGTGATTG+TGG 0.509528 3_3:+72421201 None:intergenic
GAACAGGATGGGGTGGCCGA+GGG 0.510010 3_3:-72420714 Msa0470340:intron
AATCACTTGCACAACGAAGC+AGG 0.517094 3_3:-72421197 Msa0470340:CDS
TACTGATAAAAGCATAATCC+TGG 0.519988 3_3:+72422941 None:intergenic
AAAATTTAGCTCATTCCCTC+CGG 0.520005 3_3:+72420634 None:intergenic
TGAATACAGCATTCTGGGCG+AGG 0.532999 3_3:+72422911 None:intergenic
CAAGTGATTGTGGTGCAACC+AGG 0.558677 3_3:+72421211 None:intergenic
ATCACTTGCACAACGAAGCA+GGG 0.575010 3_3:-72421196 Msa0470340:CDS
CATGGAAAAGAAAACCGGAA+TGG 0.575984 3_3:+72420568 None:intergenic
GCAACCACGATTGTTGGACC+AGG 0.579692 3_3:-72422959 Msa0470340:CDS
AACTTCTGAACAGGATGGGG+TGG 0.581840 3_3:-72420721 Msa0470340:intron
GATTGTGGTGCAACCAGGGA+CGG 0.591641 3_3:+72421216 None:intergenic
CGGTTAGAGGAAGCATCAAG+AGG 0.632608 3_3:+72420654 None:intergenic
TTGATGCTTCCTCTAACCGG+AGG 0.635948 3_3:-72420650 Msa0470340:CDS
TGATGCTTCCTCTAACCGGA+GGG 0.648380 3_3:-72420649 Msa0470340:CDS
TGATCAATCGAGATCAAACG+AGG 0.656317 3_3:-72420547 Msa0470340:CDS
TAATCCTGGTCCAACAATCG+TGG 0.660315 3_3:+72422955 None:intergenic
AAGTGATTGTGGTGCAACCA+GGG 0.678211 3_3:+72421212 None:intergenic
GATCAATCGAGATCAAACGA+GGG 0.743681 3_3:-72420546 Msa0470340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! CAGTAAATTTTAATTTAATT+TGG + chr3_3:72422382-72422401 None:intergenic 10.0%
!! AACTTCAAAAATATCAATAA+TGG - chr3_3:72421265-72421284 Msa0470340:intron 15.0%
!! TTATATATGAAAAGCTTAAT+AGG - chr3_3:72421296-72421315 Msa0470340:intron 15.0%
!! AATTTAACATTTGATTGATA+TGG + chr3_3:72421737-72421756 None:intergenic 15.0%
!!! TAATTTGTTTTATCCATAAA+AGG - chr3_3:72422008-72422027 Msa0470340:intron 15.0%
!! AACATCATTATATTATCTAT+TGG - chr3_3:72422125-72422144 Msa0470340:intron 15.0%
!! TCATTATTAATTCATAAATC+AGG - chr3_3:72422737-72422756 Msa0470340:intron 15.0%
!!! CATAAAATAGGCTTTTAAAT+AGG + chr3_3:72421072-72421091 None:intergenic 20.0%
!!! TAATAAGTTTTGACCTATTT+AGG + chr3_3:72421125-72421144 None:intergenic 20.0%
!! AAATAGGTCAAAACTTATTA+AGG - chr3_3:72421125-72421144 Msa0470340:intron 20.0%
!! TAAATAATGAATTCTTACGA+AGG - chr3_3:72421175-72421194 Msa0470340:CDS 20.0%
!! TTATTTAGTAGCTGATATAT+TGG + chr3_3:72421211-72421230 None:intergenic 20.0%
!!! ACATTTTACTTATGAAATCA+TGG + chr3_3:72421565-72421584 None:intergenic 20.0%
!! TTTCATAAGTAAAATGTCTT+TGG - chr3_3:72421568-72421587 Msa0470340:intron 20.0%
!!! TTTTTTTTGCTTGTATTTGA+CGG + chr3_3:72421614-72421633 None:intergenic 20.0%
!! TTAGCTTAACGTTAAATTAT+AGG + chr3_3:72421884-72421903 None:intergenic 20.0%
!!! GGAGAATTTTATTGTTTAAT+TGG - chr3_3:72422075-72422094 Msa0470340:intron 20.0%
!! TTTATTGTTTAATTGGAATG+TGG - chr3_3:72422082-72422101 Msa0470340:intron 20.0%
!!! TAGAAGTACATTTTGATTAT+AGG - chr3_3:72422246-72422265 Msa0470340:intron 20.0%
!! AATATAAGATACAATATGAG+TGG - chr3_3:72422427-72422446 Msa0470340:intron 20.0%
!! TTATTAATTCATAAATCAGG+AGG - chr3_3:72422740-72422759 Msa0470340:intron 20.0%
! TGTTACAGAAATTAGAATTG+AGG + chr3_3:72420688-72420707 None:intergenic 25.0%
!!! ATGTATGCATTTACTTTTGT+AGG + chr3_3:72420896-72420915 None:intergenic 25.0%
! ACAAAAGTAAATGCATACAT+AGG - chr3_3:72420896-72420915 Msa0470340:intron 25.0%
! CAAAAGTAAATGCATACATA+GGG - chr3_3:72420897-72420916 Msa0470340:intron 25.0%
! AAAAGTAAATGCATACATAG+GGG - chr3_3:72420898-72420917 Msa0470340:intron 25.0%
!!! TATAATTTTTGAAGTAGGTC+AGG + chr3_3:72420965-72420984 None:intergenic 25.0%
! TGACCTACTTCAAAAATTAT+AGG - chr3_3:72420964-72420983 Msa0470340:intron 25.0%
!! TAAAAGCCTATTTTATGCTA+AGG - chr3_3:72421075-72421094 Msa0470340:intron 25.0%
! CTAAATAACCAATCATATGA+AGG - chr3_3:72421223-72421242 Msa0470340:CDS 25.0%
! TAAGGCCTATTTAATTAAAC+AGG + chr3_3:72421367-72421386 None:intergenic 25.0%
!!! ATACTTTTTTGTATGCATAG+GGG + chr3_3:72421492-72421511 None:intergenic 25.0%
!!! GATACTTTTTTGTATGCATA+GGG + chr3_3:72421493-72421512 None:intergenic 25.0%
!!! ATACAAAAAAGTATCCATCA+AGG - chr3_3:72421498-72421517 Msa0470340:intron 25.0%
! AAATATCATGATTTCCTTGA+TGG + chr3_3:72421515-72421534 None:intergenic 25.0%
! TGTTAATGTTGTGTATAACT+CGG - chr3_3:72421776-72421795 Msa0470340:intron 25.0%
! CAATTACATCATTATGAGTT+TGG + chr3_3:72421841-72421860 None:intergenic 25.0%
! TAACGTTAAATTATAGGACA+AGG + chr3_3:72421878-72421897 None:intergenic 25.0%
! TAAGCTAAGAACTAATAGTT+TGG - chr3_3:72421896-72421915 Msa0470340:intron 25.0%
!! AAATTTAAAATGACAAAGCG+TGG + chr3_3:72421942-72421961 None:intergenic 25.0%
!! GTTTTATCCATAAAAGGAAT+TGG - chr3_3:72422014-72422033 Msa0470340:intron 25.0%
!!! AAGTACATTTTGATTATAGG+TGG - chr3_3:72422249-72422268 Msa0470340:intron 25.0%
! CTTACATAAACTAAAACAGA+AGG - chr3_3:72422632-72422651 Msa0470340:intron 25.0%
! ACACCATAATTTAATGTATG+TGG - chr3_3:72422710-72422729 Msa0470340:intron 25.0%
! ATGCCACATACATTAAATTA+TGG + chr3_3:72422716-72422735 None:intergenic 25.0%
!!! GTACTTTATTTTTCCAAACA+TGG - chr3_3:72422800-72422819 Msa0470340:intron 25.0%
! TACTGATAAAAGCATAATCC+TGG + chr3_3:72420552-72420571 None:intergenic 30.0%
!!! AGGCCTATAATTTTTGAAGT+AGG + chr3_3:72420970-72420989 None:intergenic 30.0%
! TAGGCTTTTAAATAGGCTTT+CGG + chr3_3:72421065-72421084 None:intergenic 30.0%
ATTTAAGCCAACTCCTAAAT+AGG - chr3_3:72421109-72421128 Msa0470340:intron 30.0%
AACAAAAGCCTTCATATGAT+TGG + chr3_3:72421234-72421253 None:intergenic 30.0%
ATATGAAAAGCTTAATAGGC+CGG - chr3_3:72421300-72421319 Msa0470340:intron 30.0%
!!! GGATACTTTTTTGTATGCAT+AGG + chr3_3:72421494-72421513 None:intergenic 30.0%
TTGATATGGTAATTCGTCTT+GGG + chr3_3:72421723-72421742 None:intergenic 30.0%
ATTGATATGGTAATTCGTCT+TGG + chr3_3:72421724-72421743 None:intergenic 30.0%
! ATCAAGTCCAATTCCTTTTA+TGG + chr3_3:72422024-72422043 None:intergenic 30.0%
TTGCAATTACAGATAGTGTT+TGG - chr3_3:72422048-72422067 Msa0470340:intron 30.0%
AATGCATTCATTTATTGCCA+AGG - chr3_3:72422195-72422214 Msa0470340:intron 30.0%
ATGCATTCATTTATTGCCAA+GGG - chr3_3:72422196-72422215 Msa0470340:intron 30.0%
! TTTATGTTCGTTGCAGTTTT+CGG + chr3_3:72422472-72422491 None:intergenic 30.0%
AAAACTGCAACGAACATAAA+AGG - chr3_3:72422472-72422491 Msa0470340:intron 30.0%
! CGAACATAAAAGGTATGTAT+AGG - chr3_3:72422482-72422501 Msa0470340:intron 30.0%
! CATAAAAGGTATGTATAGGA+AGG - chr3_3:72422486-72422505 Msa0470340:intron 30.0%
TAGTTTATGTAAGAGTCTCA+CGG + chr3_3:72422625-72422644 None:intergenic 30.0%
TTGATCATGGAAAAGAAAAC+CGG + chr3_3:72422930-72422949 None:intergenic 30.0%
TTCAGTGAATACAGCATTCT+GGG + chr3_3:72420587-72420606 None:intergenic 35.0%
TTCACTGAAGAAGCTACAAT+TGG - chr3_3:72420598-72420617 Msa0470340:CDS 35.0%
GAGCCAGGATAAATTATCAA+GGG - chr3_3:72420774-72420793 Msa0470340:intron 35.0%
AAAAATTATAGGCCTGAGTC+TGG - chr3_3:72420975-72420994 Msa0470340:intron 35.0%
! AGGCTTTTAAATAGGCTTTC+GGG + chr3_3:72421064-72421083 None:intergenic 35.0%
GTCAGACCTTAGCATAAAAT+AGG + chr3_3:72421084-72421103 None:intergenic 35.0%
!! GTTTTGACCTATTTAGGAGT+TGG + chr3_3:72421119-72421138 None:intergenic 35.0%
CCTATTTAATTAAACAGGCC+AGG + chr3_3:72421362-72421381 None:intergenic 35.0%
CCTGGCCTGTTTAATTAAAT+AGG - chr3_3:72421359-72421378 Msa0470340:intron 35.0%
! TCAGGCTCAAGCTTTTTATA+AGG + chr3_3:72421385-72421404 None:intergenic 35.0%
ACCTTGTTAATAAACGAGCT+GGG - chr3_3:72421404-72421423 Msa0470340:intron 35.0%
! AGCCTATTTAAAGCCTAGTT+CGG + chr3_3:72421430-72421449 None:intergenic 35.0%
!! AACTAGGCTTTAAATAGGCT+AGG - chr3_3:72421430-72421449 Msa0470340:intron 35.0%
!!! TTTTTTGTATGCATAGGGGT+GGG + chr3_3:72421488-72421507 None:intergenic 35.0%
! GGAAAAACATGCTTTTAGAC+TGG - chr3_3:72421682-72421701 Msa0470340:intron 35.0%
! ACATGCTTTTAGACTGGAAT+CGG - chr3_3:72421688-72421707 Msa0470340:intron 35.0%
ATTCATTTATTGCCAAGGGA+GGG - chr3_3:72422200-72422219 Msa0470340:intron 35.0%
!! TGTTTTTGTCACCACTTATG+TGG + chr3_3:72422358-72422377 None:intergenic 35.0%
GGAAAAATAAAGTACACCCT+CGG + chr3_3:72422795-72422814 None:intergenic 35.0%
AGAATGTTCATGTCCATGTT+TGG + chr3_3:72422816-72422835 None:intergenic 35.0%
! AAAATTTAGCTCATTCCCTC+CGG + chr3_3:72422859-72422878 None:intergenic 35.0%
AAAGAAAACCGGAATGGAAA+TGG + chr3_3:72422919-72422938 None:intergenic 35.0%
CTTCAGTGAATACAGCATTC+TGG + chr3_3:72420588-72420607 None:intergenic 40.0%
TTCATCTTCGTGTTGTCTAG+AGG + chr3_3:72420629-72420648 None:intergenic 40.0%
GGAGCCAGGATAAATTATCA+AGG - chr3_3:72420773-72420792 Msa0470340:intron 40.0%
! CCACCCTTGATAATTTATCC+TGG + chr3_3:72420780-72420799 None:intergenic 40.0%
CCAGGATAAATTATCAAGGG+TGG - chr3_3:72420777-72420796 Msa0470340:intron 40.0%
AGTAAATGCATACATAGGGG+TGG - chr3_3:72420901-72420920 Msa0470340:intron 40.0%
!!! TTTTGAAGTAGGTCAGGCTT+AGG + chr3_3:72420959-72420978 None:intergenic 40.0%
! GCTTCATCAGGCCTTTAAAA+AGG + chr3_3:72421042-72421061 None:intergenic 40.0%
AAAAGCCTATTAAGCCCATC+AGG + chr3_3:72421326-72421345 None:intergenic 40.0%
TAATTAAACAGGCCAGGCTA+AGG + chr3_3:72421356-72421375 None:intergenic 40.0%
GCTCGTTTATTAACAAGGTC+AGG + chr3_3:72421403-72421422 None:intergenic 40.0%
GACCTTGTTAATAAACGAGC+TGG - chr3_3:72421403-72421422 Msa0470340:intron 40.0%
!!! CTTTTTTGTATGCATAGGGG+TGG + chr3_3:72421489-72421508 None:intergenic 40.0%
TTACAGATAGTGTTTGGCAG+TGG - chr3_3:72422054-72422073 Msa0470340:intron 40.0%
CATTCATTTATTGCCAAGGG+AGG - chr3_3:72422199-72422218 Msa0470340:intron 40.0%
TTCATTTATTGCCAAGGGAG+GGG - chr3_3:72422201-72422220 Msa0470340:intron 40.0%
AGTTCATGGTTCCACATAAG+TGG - chr3_3:72422344-72422363 Msa0470340:intron 40.0%
CATGGAAAAGAAAACCGGAA+TGG + chr3_3:72422925-72422944 None:intergenic 40.0%
CGTTTGATCTCGATTGATCA+TGG + chr3_3:72422943-72422962 None:intergenic 40.0%
TGATCAATCGAGATCAAACG+AGG - chr3_3:72422943-72422962 Msa0470340:CDS 40.0%
GATCAATCGAGATCAAACGA+GGG - chr3_3:72422944-72422963 Msa0470340:CDS 40.0%
TAATCCTGGTCCAACAATCG+TGG + chr3_3:72420538-72420557 None:intergenic 45.0%
GATGAGCCATGAAGAGACAT+GGG + chr3_3:72420666-72420685 None:intergenic 45.0%
ACCAATCATGCCCTAGTGAA+TGG - chr3_3:72420729-72420748 Msa0470340:intron 45.0%
TCCATTCACTAGGGCATGAT+TGG + chr3_3:72420733-72420752 None:intergenic 45.0%
AATCATGCCCTAGTGAATGG+AGG - chr3_3:72420732-72420751 Msa0470340:intron 45.0%
CAACGTACCTCCATTCACTA+GGG + chr3_3:72420742-72420761 None:intergenic 45.0%
TGCATACATAGGGGTGGAAA+TGG - chr3_3:72420907-72420926 Msa0470340:intron 45.0%
GCATACATAGGGGTGGAAAT+GGG - chr3_3:72420908-72420927 Msa0470340:intron 45.0%
! ATCAGGCCTTTAAAAAGGCC+AGG + chr3_3:72421037-72421056 None:intergenic 45.0%
!!! CTTTTTTGCAAGCCTTAGCC+TGG - chr3_3:72421341-72421360 Msa0470340:intron 45.0%
GCCCAGCTCGTTTATTAACA+AGG + chr3_3:72421408-72421427 None:intergenic 45.0%
!! GGCCGAACTAGGCTTTAAAT+AGG - chr3_3:72421425-72421444 Msa0470340:intron 45.0%
CTTTAAATAGGCTAGGCCGT+AGG - chr3_3:72421437-72421456 Msa0470340:intron 45.0%
CCATGAAGCTTGTGAGAACA+AGG + chr3_3:72421660-72421679 None:intergenic 45.0%
CCTTGTTCTCACAAGCTTCA+TGG - chr3_3:72421657-72421676 Msa0470340:intron 45.0%
AAGTGATTGTGGTGCAACCA+GGG + chr3_3:72422281-72422300 None:intergenic 45.0%
CTTCGTTGTGCAAGTGATTG+TGG + chr3_3:72422292-72422311 None:intergenic 45.0%
AATCACTTGCACAACGAAGC+AGG - chr3_3:72422293-72422312 Msa0470340:intron 45.0%
ATCACTTGCACAACGAAGCA+GGG - chr3_3:72422294-72422313 Msa0470340:intron 45.0%
TGCTGTACTGTCGAAGTTCA+TGG - chr3_3:72422330-72422349 Msa0470340:intron 45.0%
TTTACTGTCTGTCTCGTTGC+AGG - chr3_3:72422395-72422414 Msa0470340:intron 45.0%
AGGATGCCTAACTTCTGAAC+AGG - chr3_3:72422760-72422779 Msa0470340:intron 45.0%
TGCCTAACTTCTGAACAGGA+TGG - chr3_3:72422764-72422783 Msa0470340:intron 45.0%
GCCTAACTTCTGAACAGGAT+GGG - chr3_3:72422765-72422784 Msa0470340:intron 45.0%
CCTAACTTCTGAACAGGATG+GGG - chr3_3:72422766-72422785 Msa0470340:intron 45.0%
CTCTTGATGCTTCCTCTAAC+CGG - chr3_3:72422837-72422856 Msa0470340:intron 45.0%
TGTCTGCTGCAGACTTAGAT+TGG - chr3_3:72422889-72422908 Msa0470340:intron 45.0%
!! TGTATATTATAAAAATAAAA+AGG - chr3_3:72422165-72422184 Msa0470340:intron 5.0%
CCAACAATCGTGGTTGCAAC+TGG + chr3_3:72420528-72420547 None:intergenic 50.0%
CCAGTTGCAACCACGATTGT+TGG - chr3_3:72420525-72420544 Msa0470340:CDS 50.0%
TGAATACAGCATTCTGGGCG+AGG + chr3_3:72420582-72420601 None:intergenic 50.0%
AAGAGACATGGGATGCGACA+CGG + chr3_3:72420655-72420674 None:intergenic 50.0%
TCGCATCCCATGTCTCTTCA+TGG - chr3_3:72420657-72420676 Msa0470340:CDS 50.0%
GGATGAGCCATGAAGAGACA+TGG + chr3_3:72420667-72420686 None:intergenic 50.0%
GCAACGTACCTCCATTCACT+AGG + chr3_3:72420743-72420762 None:intergenic 50.0%
!! ATGAGCCTATGGCGGGTAAT+AGG + chr3_3:72421001-72421020 None:intergenic 50.0%
CTCGAAAATGAGCCTATGGC+GGG + chr3_3:72421008-72421027 None:intergenic 50.0%
CCTCGAAAATGAGCCTATGG+CGG + chr3_3:72421009-72421028 None:intergenic 50.0%
AGGCCTCGAAAATGAGCCTA+TGG + chr3_3:72421012-72421031 None:intergenic 50.0%
!! GCCTGACCTGGCCTTTTTAA+AGG - chr3_3:72421028-72421047 Msa0470340:intron 50.0%
! GCCTTTAAAAAGGCCAGGTC+AGG + chr3_3:72421032-72421051 None:intergenic 50.0%
ATAGGCTTTCGGGCTTCATC+AGG + chr3_3:72421054-72421073 None:intergenic 50.0%
GTATGCATAGGGGTGGGAAT+AGG + chr3_3:72421482-72421501 None:intergenic 50.0%
GTTCTCACAAGCTTCATGGC+TGG - chr3_3:72421661-72421680 Msa0470340:intron 50.0%
ATTTATTGCCAAGGGAGGGG+TGG - chr3_3:72422204-72422223 Msa0470340:intron 50.0%
CAAGTGATTGTGGTGCAACC+AGG + chr3_3:72422282-72422301 None:intergenic 50.0%
CCCCATCCTGTTCAGAAGTT+AGG + chr3_3:72422769-72422788 None:intergenic 50.0%
AACTTCTGAACAGGATGGGG+TGG - chr3_3:72422769-72422788 Msa0470340:intron 50.0%
!! CGGTTAGAGGAAGCATCAAG+AGG + chr3_3:72422839-72422858 None:intergenic 50.0%
TTGATGCTTCCTCTAACCGG+AGG - chr3_3:72422840-72422859 Msa0470340:intron 50.0%
TGATGCTTCCTCTAACCGGA+GGG - chr3_3:72422841-72422860 Msa0470340:intron 50.0%
TTGGTGCGCCATTTCCATTC+CGG - chr3_3:72422908-72422927 Msa0470340:intron 50.0%
GCAACCACGATTGTTGGACC+AGG - chr3_3:72420531-72420550 Msa0470340:CDS 55.0%
AGAGACATGGGATGCGACAC+GGG + chr3_3:72420654-72420673 None:intergenic 55.0%
! AATGGAGGTACGTTGCACCC+AGG - chr3_3:72420747-72420766 Msa0470340:intron 55.0%
! ATGGAGGTACGTTGCACCCA+GGG - chr3_3:72420748-72420767 Msa0470340:intron 55.0%
TTTATCCTGGCTCCGTCCCT+GGG + chr3_3:72420767-72420786 None:intergenic 55.0%
ATTTATCCTGGCTCCGTCCC+TGG + chr3_3:72420768-72420787 None:intergenic 55.0%
! CATAGGGGTGGAAATGGGCT+AGG - chr3_3:72420913-72420932 Msa0470340:intron 55.0%
GGCTTAGGCCTTACAAAGCC+CGG + chr3_3:72420944-72420963 None:intergenic 55.0%
TCTGGCCTATTACCCGCCAT+AGG - chr3_3:72420993-72421012 Msa0470340:intron 55.0%
! CCGCCATAGGCTCATTTTCG+AGG - chr3_3:72421006-72421025 Msa0470340:intron 55.0%
!! CTCATTTTCGAGGCCTGACC+TGG - chr3_3:72421016-72421035 Msa0470340:intron 55.0%
AGCTTAATAGGCCGGCCTGA+TGG - chr3_3:72421308-72421327 Msa0470340:intron 55.0%
GCTTAATAGGCCGGCCTGAT+GGG - chr3_3:72421309-72421328 Msa0470340:intron 55.0%
GCCTATTAAGCCCATCAGGC+CGG + chr3_3:72421322-72421341 None:intergenic 55.0%
TAAACGAGCTGGGCCGAACT+AGG - chr3_3:72421414-72421433 Msa0470340:intron 55.0%
TGGCTGCAGAGTCATGCTTG+TGG + chr3_3:72421922-72421941 None:intergenic 55.0%
ATTATAGGTGGCTCCGTCCC+TGG - chr3_3:72422261-72422280 Msa0470340:intron 55.0%
GATTGTGGTGCAACCAGGGA+CGG + chr3_3:72422277-72422296 None:intergenic 55.0%
AGCTCATTCCCTCCGGTTAG+AGG + chr3_3:72422852-72422871 None:intergenic 55.0%
AGGTACGTTGCACCCAGGGA+CGG - chr3_3:72420752-72420771 Msa0470340:intron 60.0%
GCGGGTAATAGGCCAGACTC+AGG + chr3_3:72420990-72421009 None:intergenic 60.0%
!! GCCGGCCTGATGGGCTTAAT+AGG - chr3_3:72421318-72421337 Msa0470340:intron 60.0%
ATAGGCCAGGTCGTCCGACA+GGG + chr3_3:72421464-72421483 None:intergenic 60.0%
AATAGGCCAGGTCGTCCGAC+AGG + chr3_3:72421465-72421484 None:intergenic 60.0%
CATAGGGGTGGGAATAGGCC+AGG + chr3_3:72421477-72421496 None:intergenic 60.0%
AATGATCGCCACCCCTCCCT+TGG + chr3_3:72422215-72422234 None:intergenic 60.0%
!! GGGGTGGAAATGGGCTAGGC+CGG - chr3_3:72420917-72420936 Msa0470340:intron 65.0%
!! GGGTGGAAATGGGCTAGGCC+GGG - chr3_3:72420918-72420937 Msa0470340:intron 65.0%
AGGCCTTACAAAGCCCGGCC+CGG + chr3_3:72420939-72420958 None:intergenic 65.0%
TAGGCCAGGTCGTCCGACAG+GGG + chr3_3:72421463-72421482 None:intergenic 65.0%
TGAACAGGATGGGGTGGCCG+AGG - chr3_3:72422775-72422794 Msa0470340:intron 65.0%
GAACAGGATGGGGTGGCCGA+GGG - chr3_3:72422776-72422795 Msa0470340:intron 65.0%
TTGCACCCAGGGACGGAGCC+AGG - chr3_3:72420759-72420778 Msa0470340:intron 70.0%
!! GGAAATGGGCTAGGCCGGGC+CGG - chr3_3:72420922-72420941 Msa0470340:intron 70.0%
!! GAAATGGGCTAGGCCGGGCC+GGG - chr3_3:72420923-72420942 Msa0470340:intron 70.0%
! AGGCCGGGCCGGGCTTTGTA+AGG - chr3_3:72420933-72420952 Msa0470340:intron 70.0%
GCTAGGCCGTAGGCCCCTGT+CGG - chr3_3:72421447-72421466 Msa0470340:intron 70.0%
GGTCGTCCGACAGGGGCCTA+CGG + chr3_3:72421456-72421475 None:intergenic 70.0%
TAGGCCCCTGTCGGACGACC+TGG - chr3_3:72421456-72421475 Msa0470340:intron 70.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 72420514 72422998 72420514 ID=Msa0470340;Name=Msa0470340
chr3_3 mRNA 72420514 72422998 72420514 ID=Msa0470340-mRNA-1;Parent=Msa0470340;Name=Msa0470340-mRNA-1;_AED=0.45;_eAED=0.45;_QI=0|0|0|1|0|0|3|0|124
chr3_3 exon 72422918 72422998 72422918 ID=Msa0470340-mRNA-1:exon:18118;Parent=Msa0470340-mRNA-1
chr3_3 exon 72421168 72421244 72421168 ID=Msa0470340-mRNA-1:exon:18117;Parent=Msa0470340-mRNA-1
chr3_3 exon 72420514 72420730 72420514 ID=Msa0470340-mRNA-1:exon:18116;Parent=Msa0470340-mRNA-1
chr3_3 CDS 72422918 72422998 72422918 ID=Msa0470340-mRNA-1:cds;Parent=Msa0470340-mRNA-1
chr3_3 CDS 72421168 72421244 72421168 ID=Msa0470340-mRNA-1:cds;Parent=Msa0470340-mRNA-1
chr3_3 CDS 72420514 72420730 72420514 ID=Msa0470340-mRNA-1:cds;Parent=Msa0470340-mRNA-1
Gene Sequence

>Msa0470340

ATGGAAGAGAACCAGTTGCAACCACGATTGTTGGACCAGGATTATGCTTTTATCAGTATCTACGTCCTCGCCCAGAATGCTGTGGCTCCGTCCCTGGTTGCACCACAATCACTTGCACAACGAAGCAGGGAAACTTCTTTGTCTGCTGTACTGTCGAAGATGGGGTGGCCGAGGGTGTACTTTATTTTTCCAAACATGGACATGAACATTCTCCTCTTGATGCTTCCTCTAACCGGAGGGAATGAGCTAAATTTTCTGAAGTTCTTGTCTGCTGCAGACTTAGATTGGTGCGCCATTTCCATTCCGGTTTTCTTTTCCATGATCAATCGAGATCAAACGAGGGTTTTGCTTGATCTGATGATAGAATTAATGTGA

Protein sequence

>Msa0470340

MEENQLQPRLLDQDYAFISIYVLAQNAVAPSLVAPQSLAQRSRETSLSAVLSKMGWPRVYFIFPNMDMNILLLMLPLTGGNELNFLKFLSAADLDWCAISIPVFFSMINRDQTRVLLDLMIELM*