Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183750 | XP_013470277.1 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183750 | A0A072W228 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0036960 | Msa0183750 | 0.816900 | 4.356318e-52 | -8.615850e-47 |
| Msa0044100 | Msa0183750 | 0.962107 | 1.744793e-120 | -8.615850e-47 |
| Msa0095540 | Msa0183750 | 0.825028 | 5.859837e-54 | -8.615850e-47 |
| Msa0141100 | Msa0183750 | 0.866212 | 3.361852e-65 | -8.615850e-47 |
| Msa0164660 | Msa0183750 | 0.822895 | 1.854270e-53 | -8.615850e-47 |
| Msa0165430 | Msa0183750 | 0.801012 | 1.100721e-48 | -8.615850e-47 |
| Msa0183750 | Msa0185380 | 0.821054 | 4.950400e-53 | -8.615850e-47 |
| Msa0183750 | Msa0185480 | 0.823995 | 1.025767e-53 | -8.615850e-47 |
| Msa0183750 | Msa0185640 | -0.829939 | 3.887411e-55 | -8.615850e-47 |
| Msa0183750 | Msa0191040 | 0.834774 | 2.468054e-56 | -8.615850e-47 |
| Msa0183750 | Msa0203640 | 0.803217 | 3.874341e-49 | -8.615850e-47 |
| Msa0183750 | Msa0220300 | 0.830979 | 2.164355e-55 | -8.615850e-47 |
| Msa0183750 | Msa0233340 | 0.834937 | 2.245208e-56 | -8.615850e-47 |
| Msa0183750 | Msa0251240 | 0.817448 | 3.280005e-52 | -8.615850e-47 |
| Msa0183750 | Msa0266450 | 0.801492 | 8.775517e-49 | -8.615850e-47 |
| Msa0183750 | Msa0311690 | 0.829302 | 5.555588e-55 | -8.615850e-47 |
| Msa0183750 | Msa0342340 | -0.823064 | 1.693632e-53 | -8.615850e-47 |
| Msa0183750 | Msa0371540 | 0.801472 | 8.859148e-49 | -8.615850e-47 |
| Msa0183750 | Msa0374850 | 0.860826 | 1.575136e-63 | -8.615850e-47 |
| Msa0183750 | Msa0375090 | 0.859389 | 4.279300e-63 | -8.615850e-47 |
| Msa0183750 | Msa0385670 | 0.835289 | 1.830295e-56 | -8.615850e-47 |
| Msa0183750 | Msa0418000 | 0.837807 | 4.178923e-57 | -8.615850e-47 |
| Msa0183750 | Msa0419620 | -0.802608 | 5.174004e-49 | -8.615850e-47 |
| Msa0183750 | Msa0435670 | 0.813105 | 3.028679e-51 | -8.615850e-47 |
| Msa0183750 | Msa0465680 | -0.802114 | 6.540126e-49 | -8.615850e-47 |
| Msa0183750 | Msa0466060 | 0.805219 | 1.483535e-49 | -8.615850e-47 |
| Msa0183750 | Msa0470340 | 0.857132 | 2.009382e-62 | -8.615850e-47 |
| Msa0183750 | Msa0470860 | 0.861173 | 1.235373e-63 | -8.615850e-47 |
| Msa0183750 | Msa0479680 | 0.805692 | 1.180574e-49 | -8.615850e-47 |
| Msa0183750 | Msa0479700 | 0.808283 | 3.342666e-50 | -8.615850e-47 |
| Msa0183750 | Msa0480950 | 0.838236 | 3.242126e-57 | -8.615850e-47 |
| Msa0183750 | Msa0517340 | 0.805357 | 1.387869e-49 | -8.615850e-47 |
| Msa0183750 | Msa0531430 | 0.898972 | 3.139277e-77 | -8.615850e-47 |
| Msa0183750 | Msa0534570 | 0.836871 | 7.256373e-57 | -8.615850e-47 |
| Msa0183750 | Msa0534590 | 0.859637 | 3.604643e-63 | -8.615850e-47 |
| Msa0183750 | Msa0557680 | 0.826792 | 2.233622e-54 | -8.615850e-47 |
| Msa0183750 | Msa0565600 | 0.878041 | 3.870086e-69 | -8.615850e-47 |
| Msa0183750 | Msa0590800 | 0.848239 | 6.956982e-60 | -8.615850e-47 |
| Msa0183750 | Msa0611380 | 0.875021 | 4.278781e-68 | -8.615850e-47 |
| Msa0183750 | Msa0618180 | 0.850254 | 1.912908e-60 | -8.615850e-47 |
| Msa0183750 | Msa0618220 | 0.837078 | 6.426958e-57 | -8.615850e-47 |
| Msa0183750 | Msa0618290 | 0.803028 | 4.239223e-49 | -8.615850e-47 |
| Msa0183750 | Msa0619990 | 0.809945 | 1.472222e-50 | -8.615850e-47 |
| Msa0183750 | Msa0621890 | 0.816816 | 4.551144e-52 | -8.615850e-47 |
| Msa0183750 | Msa0628640 | 0.890063 | 1.381538e-73 | -8.615850e-47 |
| Msa0183750 | Msa0631120 | 0.862447 | 5.037118e-64 | -8.615850e-47 |
| Msa0183750 | Msa0653020 | 0.820992 | 5.115252e-53 | -8.615850e-47 |
| Msa0183750 | Msa0666030 | 0.867624 | 1.192721e-65 | -8.615850e-47 |
| Msa0183750 | Msa0669340 | 0.866013 | 3.889376e-65 | -8.615850e-47 |
| Msa0183750 | Msa0701770 | 0.829742 | 4.341122e-55 | -8.615850e-47 |
| Msa0183750 | Msa0701970 | 0.857644 | 1.418825e-62 | -8.615850e-47 |
| Msa0183750 | Msa0716450 | 0.887655 | 1.179413e-72 | -8.615850e-47 |
| Msa0183750 | Msa0717260 | 0.868101 | 8.381749e-66 | -8.615850e-47 |
| Msa0183750 | Msa0734230 | 0.824870 | 6.385767e-54 | -8.615850e-47 |
| Msa0183750 | Msa0749550 | 0.809542 | 1.796964e-50 | -8.615850e-47 |
| Msa0183750 | Msa0758320 | 0.856144 | 3.923945e-62 | -8.615850e-47 |
| Msa0183750 | Msa0766100 | -0.801574 | 8.444480e-49 | -8.615850e-47 |
| Msa0183750 | Msa0773610 | 0.819921 | 9.010313e-53 | -8.615850e-47 |
| Msa0183750 | Msa0775440 | 0.839801 | 1.274751e-57 | -8.615850e-47 |
| Msa0183750 | Msa0799030 | 0.882650 | 8.717688e-71 | -8.615850e-47 |
| Msa0183750 | Msa0799700 | 0.816487 | 5.391212e-52 | -8.615850e-47 |
| Msa0183750 | Msa0812820 | 0.852629 | 4.071278e-61 | -8.615850e-47 |
| Msa0183750 | Msa0837440 | 0.856199 | 3.780830e-62 | -8.615850e-47 |
| Msa0183750 | Msa0837980 | 0.859294 | 4.569443e-63 | -8.615850e-47 |
| Msa0183750 | Msa0837990 | 0.808715 | 2.703176e-50 | -8.615850e-47 |
| Msa0183750 | Msa0845590 | -0.808499 | 3.005036e-50 | -8.615850e-47 |
| Msa0183750 | Msa0853320 | 0.847932 | 8.456489e-60 | -8.615850e-47 |
| Msa0183750 | Msa0896210 | 0.802099 | 6.588884e-49 | -8.615850e-47 |
| Msa0183750 | Msa0944770 | 0.822674 | 2.087231e-53 | -8.615850e-47 |
| Msa0183750 | Msa0965520 | 0.813472 | 2.515763e-51 | -8.615850e-47 |
| Msa0183750 | Msa0966340 | 0.810490 | 1.123319e-50 | -8.615850e-47 |
| Msa0183750 | Msa0966440 | 0.813820 | 2.109259e-51 | -8.615850e-47 |
| Msa0183750 | Msa0981010 | 0.852748 | 3.765318e-61 | -8.615850e-47 |
| Msa0183750 | Msa1000020 | 0.812964 | 3.252988e-51 | -8.615850e-47 |
| Msa0183750 | Msa1001770 | 0.820943 | 5.250024e-53 | -8.615850e-47 |
| Msa0183750 | Msa1002620 | 0.867675 | 1.149326e-65 | -8.615850e-47 |
| Msa0183750 | Msa1007610 | -0.806776 | 6.979532e-50 | -8.615850e-47 |
| Msa0183750 | Msa1009000 | 0.804002 | 2.662425e-49 | -8.615850e-47 |
| Msa0183750 | Msa1055280 | 0.812678 | 3.756727e-51 | -8.615850e-47 |
| Msa0183750 | Msa1098560 | 0.806722 | 7.166120e-50 | -8.615850e-47 |
| Msa0183750 | Msa1113850 | 0.805004 | 1.645390e-49 | -8.615850e-47 |
| Msa0183750 | Msa1133660 | 0.801627 | 8.236886e-49 | -8.615850e-47 |
| Msa0183750 | Msa1160400 | 0.803792 | 2.943000e-49 | -8.615850e-47 |
| Msa0183750 | Msa1172590 | 0.800383 | 1.478919e-48 | -8.615850e-47 |
| Msa0183750 | Msa1190120 | 0.861648 | 8.848758e-64 | -8.615850e-47 |
| Msa0183750 | Msa1203000 | 0.845322 | 4.364969e-59 | -8.615850e-47 |
| Msa0183750 | Msa1204980 | -0.815796 | 7.693724e-52 | -8.615850e-47 |
| Msa0183750 | Msa1205010 | -0.822051 | 2.912902e-53 | -8.615850e-47 |
| Msa0183750 | Msa1211550 | 0.844293 | 8.267405e-59 | -8.615850e-47 |
| Msa0183750 | Msa1217940 | 0.800640 | 1.310707e-48 | -8.615850e-47 |
| Msa0183750 | Msa1219260 | 0.849032 | 4.193520e-60 | -8.615850e-47 |
| Msa0183750 | Msa1220230 | 0.804701 | 1.903407e-49 | -8.615850e-47 |
| Msa0183750 | Msa1223460 | 0.801034 | 1.089235e-48 | -8.615850e-47 |
| Msa0183750 | Msa1227950 | 0.835739 | 1.408466e-56 | -8.615850e-47 |
| Msa0183750 | Msa1227970 | 0.838205 | 3.301770e-57 | -8.615850e-47 |
| Msa0183750 | Msa1255280 | 0.830875 | 2.295227e-55 | -8.615850e-47 |
| Msa0183750 | Msa1256540 | -0.823420 | 1.398474e-53 | -8.615850e-47 |
| Msa0183750 | Msa1258050 | 0.821770 | 3.384325e-53 | -8.615850e-47 |
| Msa0183750 | Msa1265960 | 0.810424 | 1.160844e-50 | -8.615850e-47 |
| Msa0183750 | Msa1266960 | 0.851376 | 9.241109e-61 | -8.615850e-47 |
| Msa0183750 | Msa1271280 | 0.801202 | 1.006470e-48 | -8.615850e-47 |
| Msa0183750 | Msa1296960 | -0.836076 | 1.156742e-56 | -8.615850e-47 |
| Msa0183750 | Msa1308130 | 0.821056 | 4.946504e-53 | -8.615850e-47 |
| Msa0183750 | Msa1321000 | 0.804719 | 1.887116e-49 | -8.615850e-47 |
| Msa0183750 | Msa1329990 | 0.800229 | 1.589249e-48 | -8.615850e-47 |
| Msa0183750 | Msa1339940 | 0.851521 | 8.407663e-61 | -8.615850e-47 |
| Msa0183750 | Msa1342430 | 0.819185 | 1.326352e-52 | -8.615850e-47 |
| Msa0183750 | Msa1343820 | 0.829531 | 4.886523e-55 | -8.615850e-47 |
| Msa0183750 | Msa1355260 | 0.806845 | 6.750775e-50 | -8.615850e-47 |
| Msa0183750 | Msa1369700 | 0.956073 | 6.955816e-114 | -8.615850e-47 |
| Msa0183750 | Msa1381140 | 0.823282 | 1.506562e-53 | -8.615850e-47 |
| Msa0183750 | Msa1395870 | 0.815131 | 1.081564e-51 | -8.615850e-47 |
| Msa0183750 | Msa1397250 | 0.811677 | 6.212320e-51 | -8.615850e-47 |
| Msa0183750 | Msa1399560 | 0.852630 | 4.070295e-61 | -8.615850e-47 |
| Msa0183750 | Msa1405180 | 0.807135 | 5.859574e-50 | -8.615850e-47 |
| Msa0183750 | Msa1423450 | 0.824841 | 6.485468e-54 | -8.615850e-47 |
| Msa0183750 | Msa1431000 | 0.816049 | 6.756330e-52 | -8.615850e-47 |
| Msa0183750 | Msa1437190 | 0.976482 | 6.565454e-142 | -8.615850e-47 |
| Msa0183750 | Msa1443840 | 0.859304 | 4.536320e-63 | -8.615850e-47 |
| Msa0183750 | Msa1452060 | 0.850724 | 1.411001e-60 | -8.615850e-47 |
| Msa0183750 | Msa1460380 | 0.968210 | 2.356773e-128 | -8.615850e-47 |
| Msa0183750 | Msa1460890 | 0.823131 | 1.634062e-53 | -8.615850e-47 |
| Msa0183750 | Msa1464560 | 0.803168 | 3.965070e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183750 | MtrunA17_Chr1g0210721 | 92.230 | 296 | 23 | 0 | 1 | 296 | 1 | 296 | 0.0 | 569 |
| Msa0183750 | MtrunA17_Chr1g0210731 | 66.234 | 308 | 90 | 5 | 4 | 300 | 1 | 305 | 3.11e-138 | 392 |
| Msa0183750 | MtrunA17_Chr2g0287431 | 45.608 | 296 | 149 | 3 | 1 | 288 | 1 | 292 | 6.91e-82 | 250 |
| Msa0183750 | MtrunA17_Chr4g0033971 | 29.183 | 257 | 159 | 6 | 6 | 248 | 6 | 253 | 1.61e-29 | 114 |
| Msa0183750 | MtrunA17_Chr5g0409571 | 26.545 | 275 | 185 | 6 | 1 | 266 | 1 | 267 | 2.31e-21 | 91.3 |
| Msa0183750 | MtrunA17_Chr8g0369411 | 25.940 | 266 | 178 | 7 | 6 | 261 | 6 | 262 | 3.39e-19 | 85.1 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0183750 | AT1G55230.1 | 47.987 | 298 | 137 | 7 | 1 | 287 | 1 | 291 | 1.25e-91 | 274 |
| Msa0183750 | AT1G55240.1 | 45.517 | 290 | 147 | 4 | 6 | 287 | 6 | 292 | 2.25e-85 | 259 |
| Msa0183750 | AT5G19870.1 | 42.857 | 280 | 148 | 2 | 1 | 272 | 1 | 276 | 5.34e-79 | 241 |
| Msa0183750 | AT1G49470.1 | 28.904 | 301 | 184 | 8 | 6 | 287 | 6 | 295 | 7.07e-26 | 104 |
| Msa0183750 | AT1G32127.2 | 28.571 | 245 | 158 | 5 | 1 | 236 | 1 | 237 | 3.64e-20 | 88.2 |
| Msa0183750 | AT1G32127.1 | 28.571 | 245 | 158 | 5 | 1 | 236 | 1 | 237 | 3.64e-20 | 88.2 |
Find 59 sgRNAs with CRISPR-Local
Find 136 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TTGATTATGGCTATAATTTA+TGG | 0.111898 | 1_4:-72741771 | Msa0183750:CDS |
| CTCTAAGTATCTACTTATTT+TGG | 0.153608 | 1_4:+72742397 | None:intergenic |
| CCAACACTTCATTACCCTTT+TGG | 0.220978 | 1_4:-72742427 | Msa0183750:CDS |
| CAATTCAGCTGGTTCTTTAT+TGG | 0.239215 | 1_4:-72741822 | Msa0183750:CDS |
| GGTTTAGTGCTTTCTATATC+TGG | 0.242800 | 1_4:-72741948 | Msa0183750:CDS |
| TCAACCCAAAGGTTGCTTCT+TGG | 0.301483 | 1_4:-72741922 | Msa0183750:CDS |
| GGCTGAGAAGATTGCGCAAC+TGG | 0.317645 | 1_4:+72742358 | None:intergenic |
| AGGTTTGTTCATTATGTTCA+TGG | 0.326708 | 1_4:-72741970 | Msa0183750:CDS |
| TGTGTTCAACTTGGTGGATA+TGG | 0.336618 | 1_4:+72742291 | None:intergenic |
| GTTACAACCCTTATGGGAAT+TGG | 0.339254 | 1_4:-72742047 | Msa0183750:CDS |
| AGTGTCTTTCTACTTGATTA+TGG | 0.354291 | 1_4:-72741784 | Msa0183750:CDS |
| TTGCTTGCAGCTATAGCATT+TGG | 0.358644 | 1_4:-72742167 | Msa0183750:CDS |
| TTTGTTTCTATCAAGAATTA+TGG | 0.364986 | 1_4:+72742229 | None:intergenic |
| ATATTCCAAGAAGCAACCTT+TGG | 0.390404 | 1_4:+72741917 | None:intergenic |
| TGGAAAACCAATTCCCATAA+GGG | 0.397131 | 1_4:+72742040 | None:intergenic |
| TTGGAAAACCAATTCCCATA+AGG | 0.421443 | 1_4:+72742039 | None:intergenic |
| AGAAGTCACATGGGGATAGA+AGG | 0.425426 | 1_4:-72742113 | Msa0183750:CDS |
| CCAGATGATTTCTACTAGAA+TGG | 0.432826 | 1_4:-72741661 | Msa0183750:CDS |
| TGGTGAATCTTCAATTCAGC+TGG | 0.442803 | 1_4:-72741833 | Msa0183750:CDS |
| GTGGATATGGTTGGTAGGAA+TGG | 0.447015 | 1_4:+72742304 | None:intergenic |
| CCATTCTAGTAGAAATCATC+TGG | 0.450188 | 1_4:+72741661 | None:intergenic |
| GGTTTGTTCATTATGTTCAT+GGG | 0.458171 | 1_4:-72741969 | Msa0183750:CDS |
| TATTCCAAGAAGCAACCTTT+GGG | 0.461299 | 1_4:+72741918 | None:intergenic |
| TATGCATCGTGCTGTTTCAT+TGG | 0.468772 | 1_4:-72741853 | Msa0183750:CDS |
| AAGGAGATCAACTTATGGTT+AGG | 0.470541 | 1_4:-72741893 | Msa0183750:CDS |
| GGTTAGGTGCAATGATGAAA+AGG | 0.480561 | 1_4:-72741877 | Msa0183750:CDS |
| AGGCACTATGATTGCATTGG+AGG | 0.487729 | 1_4:-72742534 | None:intergenic |
| GGTTGCTTCTTGGAATATGA+AGG | 0.488311 | 1_4:-72741912 | Msa0183750:CDS |
| GGAGTTTGAGGTAGTTGAAG+AGG | 0.502910 | 1_4:+72742465 | None:intergenic |
| ATATGAAGGAGATCAACTTA+TGG | 0.508152 | 1_4:-72741898 | Msa0183750:CDS |
| AACAAACAAAGTGGAGTTTG+AGG | 0.514586 | 1_4:+72742453 | None:intergenic |
| TGAACATAATGAACAAACCT+TGG | 0.523714 | 1_4:+72741973 | None:intergenic |
| TGTGACTTCTTGAATGAAGA+TGG | 0.525692 | 1_4:+72742126 | None:intergenic |
| ATCTTCGAAGCTTCTAGTAA+TGG | 0.527933 | 1_4:-72742329 | Msa0183750:CDS |
| CCAAAAGGGTAATGAAGTGT+TGG | 0.529229 | 1_4:+72742427 | None:intergenic |
| TGGAAGTGTGTTCAACTTGG+TGG | 0.532303 | 1_4:+72742285 | None:intergenic |
| TCTGTTAGCATGATCTTCCA+AGG | 0.532759 | 1_4:-72741990 | Msa0183750:CDS |
| GGAGTGCGATTCACTGATGA+AGG | 0.536386 | 1_4:-72741739 | Msa0183750:CDS |
| TCTAGGCACTATGATTGCAT+TGG | 0.541099 | 1_4:-72742537 | None:intergenic |
| TTGGAGGGACATATATGCAT+GGG | 0.547892 | 1_4:-72742518 | Msa0183750:CDS |
| GGCACTATGATTGCATTGGA+GGG | 0.559391 | 1_4:-72742533 | None:intergenic |
| CTTAGAGCTTTATTTCATTG+TGG | 0.561652 | 1_4:-72742381 | Msa0183750:CDS |
| TTCAACTTGGTGGATATGGT+TGG | 0.563681 | 1_4:+72742295 | None:intergenic |
| TATGAAGAAAGACACAGTAA+TGG | 0.570471 | 1_4:+72742265 | None:intergenic |
| AAGGAGGAACAGTACGGTGA+AGG | 0.576386 | 1_4:-72741720 | Msa0183750:CDS |
| ACTTGGTGGATATGGTTGGT+AGG | 0.580887 | 1_4:+72742299 | None:intergenic |
| TCTATCAAGAATTATGGCAA+AGG | 0.582723 | 1_4:+72742235 | None:intergenic |
| GAACAGTACGGTGAAGGCGA+TGG | 0.598192 | 1_4:-72741714 | Msa0183750:CDS |
| ATATCTGGTTATCAACCCAA+AGG | 0.602519 | 1_4:-72741933 | Msa0183750:CDS |
| TCTTCATTCAAGAAGTCACA+TGG | 0.616300 | 1_4:-72742123 | Msa0183750:CDS |
| ATTGGAGGGACATATATGCA+TGG | 0.620076 | 1_4:-72742519 | Msa0183750:CDS |
| TAATGGAAGTGTGTTCAACT+TGG | 0.624797 | 1_4:+72742282 | None:intergenic |
| TGTTGGAAGAACAAACAAAG+TGG | 0.643408 | 1_4:+72742444 | None:intergenic |
| CTTCATTCAAGAAGTCACAT+GGG | 0.655694 | 1_4:-72742122 | Msa0183750:CDS |
| TGGAGGGACATATATGCATG+GGG | 0.665069 | 1_4:-72742517 | Msa0183750:CDS |
| GTGCGATTCACTGATGAAGG+AGG | 0.666959 | 1_4:-72741736 | Msa0183750:CDS |
| AGAAGCTTCGAAGATTTCTG+CGG | 0.668279 | 1_4:+72742337 | None:intergenic |
| CTGATGAAGGAGGAACAGTA+CGG | 0.675878 | 1_4:-72741726 | Msa0183750:CDS |
| TTCATTCAAGAAGTCACATG+GGG | 0.680400 | 1_4:-72742121 | Msa0183750:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTGTTTCTATCAAGAATTA+TGG | + | chr1_4:72741948-72741967 | None:intergenic | 20.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | - | chr1_4:72742403-72742422 | Msa0183750:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | - | chr1_4:72742414-72742433 | Msa0183750:CDS | 20.0% |
| !!! | TTTGTTTCTATCAAGAATTA+TGG | + | chr1_4:72741948-72741967 | None:intergenic | 20.0% |
| !! | TTGATTATGGCTATAATTTA+TGG | - | chr1_4:72742403-72742422 | Msa0183750:CDS | 20.0% |
| !! | TATAATTTATGGTGAAAAAG+TGG | - | chr1_4:72742414-72742433 | Msa0183750:CDS | 20.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | + | chr1_4:72741776-72741795 | None:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | + | chr1_4:72741777-72741796 | None:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | + | chr1_4:72741780-72741799 | None:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCAT+TGG | + | chr1_4:72742157-72742176 | None:intergenic | 25.0% |
| !!! | AAGTATCTACTTATTTTGGT+GGG | + | chr1_4:72741776-72741795 | None:intergenic | 25.0% |
| !!! | TAAGTATCTACTTATTTTGG+TGG | + | chr1_4:72741777-72741796 | None:intergenic | 25.0% |
| !! | CTCTAAGTATCTACTTATTT+TGG | + | chr1_4:72741780-72741799 | None:intergenic | 25.0% |
| ! | AAACATACCAAAAAACTCAT+TGG | + | chr1_4:72742157-72742176 | None:intergenic | 25.0% |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | - | chr1_4:72741684-72741703 | Msa0183750:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | - | chr1_4:72741793-72741812 | Msa0183750:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | + | chr1_4:72741912-72741931 | None:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | + | chr1_4:72741942-72741961 | None:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | - | chr1_4:72742100-72742119 | Msa0183750:CDS | 30.0% |
| ! | TGGTTTTCCAATGAGTTTTT+TGG | - | chr1_4:72742147-72742166 | Msa0183750:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | + | chr1_4:72742204-72742223 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | - | chr1_4:72742204-72742223 | Msa0183750:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | - | chr1_4:72742205-72742224 | Msa0183750:CDS | 30.0% |
| ATATGAAGGAGATCAACTTA+TGG | - | chr1_4:72742276-72742295 | Msa0183750:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | - | chr1_4:72742390-72742409 | Msa0183750:CDS | 30.0% | |
| ! | TTTTCTTTGTACTTGGTTTC+TGG | - | chr1_4:72741684-72741703 | Msa0183750:CDS | 30.0% |
| !! | CTTAGAGCTTTATTTCATTG+TGG | - | chr1_4:72741793-72741812 | Msa0183750:CDS | 30.0% |
| TATGAAGAAAGACACAGTAA+TGG | + | chr1_4:72741912-72741931 | None:intergenic | 30.0% | |
| TCTATCAAGAATTATGGCAA+AGG | + | chr1_4:72741942-72741961 | None:intergenic | 30.0% | |
| !!! | TTGCAAGTTTTGATTCTGAT+AGG | - | chr1_4:72742100-72742119 | Msa0183750:CDS | 30.0% |
| ! | TGGTTTTCCAATGAGTTTTT+TGG | - | chr1_4:72742147-72742166 | Msa0183750:CDS | 30.0% |
| TGAACATAATGAACAAACCT+TGG | + | chr1_4:72742204-72742223 | None:intergenic | 30.0% | |
| ! | AGGTTTGTTCATTATGTTCA+TGG | - | chr1_4:72742204-72742223 | Msa0183750:CDS | 30.0% |
| ! | GGTTTGTTCATTATGTTCAT+GGG | - | chr1_4:72742205-72742224 | Msa0183750:CDS | 30.0% |
| ATATGAAGGAGATCAACTTA+TGG | - | chr1_4:72742276-72742295 | Msa0183750:CDS | 30.0% | |
| AGTGTCTTTCTACTTGATTA+TGG | - | chr1_4:72742390-72742409 | Msa0183750:CDS | 30.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | - | chr1_4:72741677-72741696 | Msa0183750:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | + | chr1_4:72741724-72741743 | None:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | + | chr1_4:72741733-72741752 | None:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | + | chr1_4:72741764-72741783 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | + | chr1_4:72741765-72741784 | None:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | - | chr1_4:72741845-72741864 | Msa0183750:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | + | chr1_4:72741895-72741914 | None:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | + | chr1_4:72742051-72742070 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | - | chr1_4:72742051-72742070 | Msa0183750:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | - | chr1_4:72742052-72742071 | Msa0183750:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | - | chr1_4:72742053-72742072 | Msa0183750:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | - | chr1_4:72742120-72742139 | Msa0183750:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | - | chr1_4:72742121-72742140 | Msa0183750:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | + | chr1_4:72742137-72742156 | None:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | + | chr1_4:72742138-72742157 | None:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | - | chr1_4:72742226-72742245 | Msa0183750:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | - | chr1_4:72742241-72742260 | Msa0183750:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | + | chr1_4:72742259-72742278 | None:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | + | chr1_4:72742260-72742279 | None:intergenic | 35.0% | |
| AAGGAGATCAACTTATGGTT+AGG | - | chr1_4:72742281-72742300 | Msa0183750:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | - | chr1_4:72742352-72742371 | Msa0183750:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | + | chr1_4:72742516-72742535 | None:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | - | chr1_4:72742513-72742532 | Msa0183750:CDS | 35.0% | |
| !! | GGGTTTGTTTTCTTTGTACT+TGG | - | chr1_4:72741677-72741696 | Msa0183750:CDS | 35.0% |
| AACAAACAAAGTGGAGTTTG+AGG | + | chr1_4:72741724-72741743 | None:intergenic | 35.0% | |
| TGTTGGAAGAACAAACAAAG+TGG | + | chr1_4:72741733-72741752 | None:intergenic | 35.0% | |
| !! | ATTTTGGTGGGAAACCAAAA+GGG | + | chr1_4:72741764-72741783 | None:intergenic | 35.0% |
| !!! | TATTTTGGTGGGAAACCAAA+AGG | + | chr1_4:72741765-72741784 | None:intergenic | 35.0% |
| ATCTTCGAAGCTTCTAGTAA+TGG | - | chr1_4:72741845-72741864 | Msa0183750:CDS | 35.0% | |
| ! | TAATGGAAGTGTGTTCAACT+TGG | + | chr1_4:72741895-72741914 | None:intergenic | 35.0% |
| TGTGACTTCTTGAATGAAGA+TGG | + | chr1_4:72742051-72742070 | None:intergenic | 35.0% | |
| TCTTCATTCAAGAAGTCACA+TGG | - | chr1_4:72742051-72742070 | Msa0183750:CDS | 35.0% | |
| CTTCATTCAAGAAGTCACAT+GGG | - | chr1_4:72742052-72742071 | Msa0183750:CDS | 35.0% | |
| TTCATTCAAGAAGTCACATG+GGG | - | chr1_4:72742053-72742072 | Msa0183750:CDS | 35.0% | |
| !!! | AGGTTTTGTTACAACCCTTA+TGG | - | chr1_4:72742120-72742139 | Msa0183750:CDS | 35.0% |
| !!! | GGTTTTGTTACAACCCTTAT+GGG | - | chr1_4:72742121-72742140 | Msa0183750:CDS | 35.0% |
| TGGAAAACCAATTCCCATAA+GGG | + | chr1_4:72742137-72742156 | None:intergenic | 35.0% | |
| TTGGAAAACCAATTCCCATA+AGG | + | chr1_4:72742138-72742157 | None:intergenic | 35.0% | |
| GGTTTAGTGCTTTCTATATC+TGG | - | chr1_4:72742226-72742245 | Msa0183750:CDS | 35.0% | |
| ATATCTGGTTATCAACCCAA+AGG | - | chr1_4:72742241-72742260 | Msa0183750:CDS | 35.0% | |
| TATTCCAAGAAGCAACCTTT+GGG | + | chr1_4:72742259-72742278 | None:intergenic | 35.0% | |
| ATATTCCAAGAAGCAACCTT+TGG | + | chr1_4:72742260-72742279 | None:intergenic | 35.0% | |
| AAGGAGATCAACTTATGGTT+AGG | - | chr1_4:72742281-72742300 | Msa0183750:CDS | 35.0% | |
| ! | CAATTCAGCTGGTTCTTTAT+TGG | - | chr1_4:72742352-72742371 | Msa0183750:CDS | 35.0% |
| CCATTCTAGTAGAAATCATC+TGG | + | chr1_4:72742516-72742535 | None:intergenic | 35.0% | |
| CCAGATGATTTCTACTAGAA+TGG | - | chr1_4:72742513-72742532 | Msa0183750:CDS | 35.0% | |
| ATTGGAGGGACATATATGCA+TGG | - | chr1_4:72741655-72741674 | Msa0183750:CDS | 40.0% | |
| TTGGAGGGACATATATGCAT+GGG | - | chr1_4:72741656-72741675 | Msa0183750:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | + | chr1_4:72741750-72741769 | None:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | - | chr1_4:72741747-72741766 | Msa0183750:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | + | chr1_4:72741840-72741859 | None:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | + | chr1_4:72741882-72741901 | None:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | + | chr1_4:72741886-72741905 | None:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | - | chr1_4:72742007-72742026 | Msa0183750:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | - | chr1_4:72742127-72742146 | Msa0183750:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | - | chr1_4:72742184-72742203 | Msa0183750:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | - | chr1_4:72742262-72742281 | Msa0183750:CDS | 40.0% | |
| GGTTAGGTGCAATGATGAAA+AGG | - | chr1_4:72742297-72742316 | Msa0183750:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | - | chr1_4:72742321-72742340 | Msa0183750:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | - | chr1_4:72742341-72742360 | Msa0183750:CDS | 40.0% | |
| ATTGGAGGGACATATATGCA+TGG | - | chr1_4:72741655-72741674 | Msa0183750:CDS | 40.0% | |
| TTGGAGGGACATATATGCAT+GGG | - | chr1_4:72741656-72741675 | Msa0183750:CDS | 40.0% | |
| CCAAAAGGGTAATGAAGTGT+TGG | + | chr1_4:72741750-72741769 | None:intergenic | 40.0% | |
| ! | CCAACACTTCATTACCCTTT+TGG | - | chr1_4:72741747-72741766 | Msa0183750:CDS | 40.0% |
| AGAAGCTTCGAAGATTTCTG+CGG | + | chr1_4:72741840-72741859 | None:intergenic | 40.0% | |
| ! | TTCAACTTGGTGGATATGGT+TGG | + | chr1_4:72741882-72741901 | None:intergenic | 40.0% |
| ! | TGTGTTCAACTTGGTGGATA+TGG | + | chr1_4:72741886-72741905 | None:intergenic | 40.0% |
| TTGCTTGCAGCTATAGCATT+TGG | - | chr1_4:72742007-72742026 | Msa0183750:CDS | 40.0% | |
| GTTACAACCCTTATGGGAAT+TGG | - | chr1_4:72742127-72742146 | Msa0183750:CDS | 40.0% | |
| TCTGTTAGCATGATCTTCCA+AGG | - | chr1_4:72742184-72742203 | Msa0183750:CDS | 40.0% | |
| GGTTGCTTCTTGGAATATGA+AGG | - | chr1_4:72742262-72742281 | Msa0183750:CDS | 40.0% | |
| GGTTAGGTGCAATGATGAAA+AGG | - | chr1_4:72742297-72742316 | Msa0183750:CDS | 40.0% | |
| !! | TATGCATCGTGCTGTTTCAT+TGG | - | chr1_4:72742321-72742340 | Msa0183750:CDS | 40.0% |
| TGGTGAATCTTCAATTCAGC+TGG | - | chr1_4:72742341-72742360 | Msa0183750:CDS | 40.0% | |
| TGGAGGGACATATATGCATG+GGG | - | chr1_4:72741657-72741676 | Msa0183750:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | + | chr1_4:72741712-72741731 | None:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | + | chr1_4:72741873-72741892 | None:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | + | chr1_4:72741878-72741897 | None:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | + | chr1_4:72741892-72741911 | None:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | - | chr1_4:72742061-72742080 | Msa0183750:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | - | chr1_4:72742252-72742271 | Msa0183750:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | - | chr1_4:72742448-72742467 | Msa0183750:CDS | 45.0% | |
| TGGAGGGACATATATGCATG+GGG | - | chr1_4:72741657-72741676 | Msa0183750:CDS | 45.0% | |
| ! | GGAGTTTGAGGTAGTTGAAG+AGG | + | chr1_4:72741712-72741731 | None:intergenic | 45.0% |
| !! | GTGGATATGGTTGGTAGGAA+TGG | + | chr1_4:72741873-72741892 | None:intergenic | 45.0% |
| ! | ACTTGGTGGATATGGTTGGT+AGG | + | chr1_4:72741878-72741897 | None:intergenic | 45.0% |
| ! | TGGAAGTGTGTTCAACTTGG+TGG | + | chr1_4:72741892-72741911 | None:intergenic | 45.0% |
| AGAAGTCACATGGGGATAGA+AGG | - | chr1_4:72742061-72742080 | Msa0183750:CDS | 45.0% | |
| TCAACCCAAAGGTTGCTTCT+TGG | - | chr1_4:72742252-72742271 | Msa0183750:CDS | 45.0% | |
| CTGATGAAGGAGGAACAGTA+CGG | - | chr1_4:72742448-72742467 | Msa0183750:CDS | 45.0% | |
| GGAGTGCGATTCACTGATGA+AGG | - | chr1_4:72742435-72742454 | Msa0183750:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | - | chr1_4:72742438-72742457 | Msa0183750:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | - | chr1_4:72742454-72742473 | Msa0183750:CDS | 50.0% | |
| GGAGTGCGATTCACTGATGA+AGG | - | chr1_4:72742435-72742454 | Msa0183750:CDS | 50.0% | |
| GTGCGATTCACTGATGAAGG+AGG | - | chr1_4:72742438-72742457 | Msa0183750:CDS | 50.0% | |
| AAGGAGGAACAGTACGGTGA+AGG | - | chr1_4:72742454-72742473 | Msa0183750:CDS | 50.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | + | chr1_4:72741819-72741838 | None:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | - | chr1_4:72742460-72742479 | Msa0183750:CDS | 55.0% | |
| GGCTGAGAAGATTGCGCAAC+TGG | + | chr1_4:72741819-72741838 | None:intergenic | 55.0% | |
| GAACAGTACGGTGAAGGCGA+TGG | - | chr1_4:72742460-72742479 | Msa0183750:CDS | 55.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_4 | gene | 72741647 | 72742549 | 72741647 | ID=Msa0183750;Name=Msa0183750 |
| chr1_4 | mRNA | 72741647 | 72742549 | 72741647 | ID=Msa0183750-mRNA-1;Parent=Msa0183750;Name=Msa0183750-mRNA-1;_AED=0.26;_eAED=0.26;_QI=0|-1|0|1|-1|1|1|0|300 |
| chr1_4 | exon | 72741647 | 72742549 | 72741647 | ID=Msa0183750-mRNA-1:exon:24686;Parent=Msa0183750-mRNA-1 |
| chr1_4 | CDS | 72741647 | 72742549 | 72741647 | ID=Msa0183750-mRNA-1:cds;Parent=Msa0183750-mRNA-1 |
| Gene Sequence |
| Protein sequence |
