AlfalfaGEDB | Msa0701970

M. sativa cultivar zhongmu-4 / Msa0701970

KEGG: -
GO: GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944
PFAM: PF00657.25

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701970	RHN42718.1	81.766	351	11	1	1	298	56	406	0.0	568

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701970	sp\|Q9C7N4\|GDL15_ARATH	39.891	366	149	9	1	298	1	363	8.61e-80	249

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701970	A0A396GQT2	81.766	351	11	1	1	298	56	406	0.0	568

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0044100	Msa0701970	0.841756	3.917987e-58	-8.615850e-47
Msa0095540	Msa0701970	0.813368	2.652507e-51	-8.615850e-47
Msa0141100	Msa0701970	0.864882	8.828701e-65	-8.615850e-47
Msa0183750	Msa0701970	0.857644	1.418825e-62	-8.615850e-47
Msa0185380	Msa0701970	0.801993	6.925623e-49	-8.615850e-47
Msa0191040	Msa0701970	0.801402	9.157247e-49	-8.615850e-47
Msa0220300	Msa0701970	0.807043	6.128308e-50	-8.615850e-47
Msa0233340	Msa0701970	0.801792	7.619652e-49	-8.615850e-47
Msa0251240	Msa0701970	0.802580	5.243429e-49	-8.615850e-47
Msa0311690	Msa0701970	0.802289	6.020876e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701970	MtrunA17_Chr8g0380031	81.766	351	11	1	1	298	56	406	0.0	568
Msa0701970	MtrunA17_Chr2g0284951	50.139	359	112	8	1	297	1	354	2.20e-104	309
Msa0701970	MtrunA17_Chr2g0284991	48.611	360	121	8	1	297	1	359	7.07e-101	300
Msa0701970	MtrunA17_Chr2g0284921	46.281	363	128	10	1	298	1	361	2.92e-94	283
Msa0701970	MtrunA17_Chr2g0285001	45.983	361	130	9	1	297	1	360	2.84e-92	278
Msa0701970	MtrunA17_Chr3g0085881	45.098	357	131	8	1	297	1	352	5.32e-92	277
Msa0701970	MtrunA17_Chr2g0284941	45.404	359	113	8	1	297	1	338	6.66e-89	269
Msa0701970	MtrunA17_Chr3g0086641	41.274	361	146	6	1	298	13	370	1.80e-86	263
Msa0701970	MtrunA17_Chr8g0380041	41.813	342	134	6	21	298	23	363	1.01e-81	251
Msa0701970	MtrunA17_Chr2g0285061	40.950	337	135	5	26	298	29	365	1.35e-79	245

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0701970	AT1G29670.1	39.891	366	149	9	1	298	1	363	8.75e-81	249
Msa0701970	AT1G29670.2	39.891	366	149	9	1	298	69	431	8.12e-80	248
Msa0701970	AT1G29660.1	36.415	357	159	6	6	298	12	364	3.96e-77	239
Msa0701970	AT4G18970.1	39.412	340	142	5	23	298	22	361	8.07e-77	238
Msa0701970	AT4G18970.2	39.412	340	142	5	23	298	22	361	7.14e-76	238
Msa0701970	AT5G45670.1	37.921	356	155	6	9	298	7	362	1.05e-75	236
Msa0701970	AT1G33811.1	37.673	361	154	11	7	298	12	370	3.65e-69	219
Msa0701970	AT2G19010.1	35.860	343	162	8	8	297	10	347	8.99e-60	194
Msa0701970	AT2G19010.2	35.860	343	162	8	8	297	40	377	4.50e-59	193
Msa0701970	AT1G71691.2	37.015	335	144	8	27	298	53	383	1.28e-57	190

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Find 85 sgRNAs with CRISPR-Local

Find 228 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGTTAATTACAGGCCTTA+TGG	0.291310	4_4:+73420399	Msa0701970:CDS
AAATGAAAAGACATGGAACT+TGG	0.425433	4_4:-73420323	None:intergenic
AAGTTAATTACAGGCCTTAT+GGG	0.326292	4_4:+73420400	Msa0701970:CDS
AATCTTCCCGTAGGACCAGC+AGG	0.519591	4_4:-73420432	None:intergenic
AATGAAAAGACATGGAACTT+GGG	0.513164	4_4:-73420322	None:intergenic
AATTATGCATCCGGTGCAGC+AGG	0.432883	4_4:+73420903	Msa0701970:CDS
AATTTGTTGACCACCTCAGT+TGG	0.533120	4_4:-73423622	None:intergenic
ACAAGACGACAGATATCCAT+TGG	0.523223	4_4:-73423691	None:intergenic
ACTGTTAATGAAGATGAATT+TGG	0.317652	4_4:-73422726	None:intergenic
AGGGTCCAGATATCAGCATG+GGG	0.720526	4_4:+73421128	Msa0701970:intron

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGGATCATAAGACTAAGTTA+TGG	+	chr4_4:73420250-73420269	Msa0701970:CDS	30.0%
TCATAAGACTAAGTTATGGA+TGG	+	chr4_4:73420254-73420273	Msa0701970:CDS	30.0%
AATGAAAAGACATGGAACTT+GGG	-	chr4_4:73420325-73420344	None:intergenic	30.0%
AAATGAAAAGACATGGAACT+TGG	-	chr4_4:73420326-73420345	None:intergenic	30.0%
TCTCCAAAAATGAAAAGACA+TGG	-	chr4_4:73420333-73420352	None:intergenic	30.0%
ATAAGGCCTGTAATTAACTT+TGG	-	chr4_4:73420400-73420419	None:intergenic	30.0%
AAAGTTAATTACAGGCCTTA+TGG	+	chr4_4:73420399-73420418	Msa0701970:CDS	30.0%
TGATTATGTCAACTGAAGTA+CGG	-	chr4_4:73420467-73420486	None:intergenic	30.0%
TCCAAAATTGCTAAGAAACT+TGG	+	chr4_4:73421181-73421200	Msa0701970:CDS	30.0%
AAAAACTAATTTAACTGGGG+CGG	-	chr4_4:73421537-73421556	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr4_4	gene	73420209	73424035	73420209	ID=Msa0701970;Name=Msa0701970
chr4_4	mRNA	73420209	73424035	73420209	ID=Msa0701970-mRNA-1;Parent=Msa0701970;Name=Msa0701970-mRNA-1;_AED=0.29;_eAED=0.29;_QI=40\|0.75\|0.8\|1\|1\|1\|5\|312\|298
chr4_4	exon	73420209	73420486	73420209	ID=Msa0701970-mRNA-1:exon:22594;Parent=Msa0701970-mRNA-1
chr4_4	exon	73420829	73420953	73420829	ID=Msa0701970-mRNA-1:exon:22595;Parent=Msa0701970-mRNA-1
chr4_4	exon	73421130	73421213	73421130	ID=Msa0701970-mRNA-1:exon:22596;Parent=Msa0701970-mRNA-1
chr4_4	exon	73422536	73422782	73422536	ID=Msa0701970-mRNA-1:exon:22597;Parent=Msa0701970-mRNA-1
chr4_4	exon	73423521	73424035	73423521	ID=Msa0701970-mRNA-1:exon:22598;Parent=Msa0701970-mRNA-1
chr4_4	five_prime_UTR	73420209	73420248	73420209	ID=Msa0701970-mRNA-1:five_prime_utr;Parent=Msa0701970-mRNA-1
chr4_4	CDS	73420249	73420486	73420249	ID=Msa0701970-mRNA-1:cds;Parent=Msa0701970-mRNA-1
chr4_4	CDS	73420829	73420953	73420829	ID=Msa0701970-mRNA-1:cds;Parent=Msa0701970-mRNA-1
chr4_4	CDS	73421130	73421213	73421130	ID=Msa0701970-mRNA-1:cds;Parent=Msa0701970-mRNA-1
chr4_4	CDS	73422536	73422782	73422536	ID=Msa0701970-mRNA-1:cds;Parent=Msa0701970-mRNA-1
chr4_4	CDS	73423521	73423723	73423521	ID=Msa0701970-mRNA-1:cds;Parent=Msa0701970-mRNA-1
chr4_4	three_prime_UTR	73423724	73424035	73423724	ID=Msa0701970-mRNA-1:three_prime_utr;Parent=Msa0701970-mRNA-1

Gene Sequence

>Msa0701970

ATGGATCATAAGACTAAGTTATGGATGGTGCTTTTCTTCTTCTCAAGTGCAACATATTGTGTTGTTGGGAAGCCCCAAGTTCCATGTCTTTTCATTTTTGGAGATTCTTTATCGGACAGTGGAAACAACAATAACCTAGCTACCGATGCCAAAGTTAATTACAGGCCTTATGGGATTGATTTTCCTGCTGGTCCTACGGGAAGATTTACCAATGGCCGTACTTCAGTTGACATAATCACTGAACTTTTGGGATTTGACCATTTTATCCCACCTTATGCAAATACCCATGGTGCAGACATAGTTCAAGGTGTTAATTATGCATCCGGTGCAGCAGGGATCCGCAATGAGACTGGAACACACTTGGGTCCAGATATCAGCATGGGGTTGCAGTTACAACATCACACAGACATTGTTTCCAAAATTGCTAAGAAACTTGGATATGACAAAGCTATACATGGGCTTGGAGCAAGAAAGTTTTCTTTAGTTGGATTAGGCCTATTAGGTTGCGTTCCACATGAAATTTCTACCCATGGGAAAAATGATTCAAGGTGTATTCAAGAGGAGAATAATGCAGCACTACTTTTCAATGACAAACTTAAAGCCCTCGTTGATCGTTTGAATAAAGAATTAACTGATTCCAAATTCATCTTCATTAACAGTGCTGTCATAAGACATAGTCAGTTAAAGCTACCAGATCTTGTGAAATGTTGCAAAGTGGGGTCAAACGGACAGTGTATCCCTAATACGAAACCGTGCAAAGCAAGAAACCTACATCCATTTTTTGATGCATTTCATCCAACTGAGGTGGTCAACAAATTGTCTGCAAACTTAGCTTATAATGCTCCTGCTCCATCCTTTGCATATCCAATGGATATCTGTCGTCTTGTTAAATTGTAA

Protein sequence

>Msa0701970

MDHKTKLWMVLFFFSSATYCVVGKPQVPCLFIFGDSLSDSGNNNNLATDAKVNYRPYGIDFPAGPTGRFTNGRTSVDIITELLGFDHFIPPYANTHGADIVQGVNYASGAAGIRNETGTHLGPDISMGLQLQHHTDIVSKIAKKLGYDKAIHGLGARKFSLVGLGLLGCVPHEISTHGKNDSRCIQEENNAALLFNDKLKALVDRLNKELTDSKFIFINSAVIRHSQLKLPDLVKCCKVGSNGQCIPNTKPCKARNLHPFFDAFHPTEVVNKLSANLAYNAPAPSFAYPMDICRLVKL*