AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0966440

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966440 MtrunA17_Chr6g0488881 97.360 606 16 0 1 606 64 669 0.0 1241
Msa0966440 MtrunA17_Chr4g0000131 62.464 690 258 1 1 689 66 755 0.0 943
Msa0966440 MtrunA17_Chr4g0020031 60.347 691 272 2 1 689 66 756 0.0 918
Msa0966440 MtrunA17_Chr7g0228111 60.203 691 273 2 1 689 66 756 0.0 908
Msa0966440 MtrunA17_Chr5g0396321 60.492 691 271 2 1 690 65 754 0.0 883
Msa0966440 MtrunA17_Chr6g0488821 59.118 680 272 5 16 690 88 766 0.0 864
Msa0966440 MtrunA17_Chr3g0090601 56.851 686 258 3 5 689 38 686 0.0 818
Msa0966440 MtrunA17_Chr8g0342291 59.174 605 238 2 91 694 7 603 0.0 802
Msa0966440 MtrunA17_Chr4g0000191 63.600 500 181 1 191 689 1 500 0.0 696
Msa0966440 MtrunA17_Chr8g0342311 60.196 510 202 1 186 694 11 520 0.0 686
Msa0966440 MtrunA17_Chr7g0238841 56.250 512 212 3 191 690 1 512 0.0 625
Msa0966440 MtrunA17_Chr6g0463651 80.321 249 49 0 425 673 1 249 1.05e-147 430
Msa0966440 MtrunA17_Chr8g0342271 59.259 297 120 1 91 386 15 311 3.21e-138 409
Msa0966440 MtrunA17_Chr6g0463701 74.074 216 56 0 244 459 12 227 4.30e-119 356
Msa0966440 MtrunA17_Chr6g0486411 56.908 304 109 3 389 690 2 285 9.57e-115 346
Msa0966440 MtrunA17_Chr6g0463661 75.294 170 42 0 257 426 1 170 1.09e-93 288
Msa0966440 MtrunA17_Chr8g0342251 54.146 205 88 1 458 656 1 205 1.90e-78 249
Msa0966440 MtrunA17_Chr6g0486401 54.067 209 94 2 191 397 1 209 3.80e-77 246
Msa0966440 MtrunA17_Chr4g0000181 54.315 197 90 0 1 197 1 197 3.00e-76 243
Msa0966440 MtrunA17_Chr8g0342321 50.532 188 93 0 2 189 3 190 3.34e-68 221
Msa0966440 MtrunA17_Chr7g0238831 53.763 186 84 2 21 206 96 279 2.83e-66 221
Msa0966440 MtrunA17_Chr6g0486391 55.621 169 74 1 27 195 4 171 1.34e-65 214
Msa0966440 MtrunA17_Chr6g0463691 84.167 120 19 0 543 662 8 127 6.17e-65 211
Msa0966440 MtrunA17_Chr8g0342241 51.685 178 81 1 425 602 2 174 2.73e-57 192
Msa0966440 MtrunA17_Chr6g0463721 80.851 94 18 0 1 94 64 157 1.81e-45 160
Msa0966440 MtrunA17_Chr6g0488871 96.667 60 2 0 640 699 1 60 7.58e-35 126
Msa0966440 MtrunA17_Chr6g0463671 83.051 59 10 0 191 249 1 59 3.17e-30 113
Msa0966440 MtrunA17_Chr6g0463711 83.333 54 9 0 191 244 1 54 1.50e-25 100
Msa0966440 MtrunA17_Chr8g0342261 63.793 58 21 0 385 442 31 88 6.35e-21 89.0
Msa0966440 MtrunA17_Chr8g0342301 50.000 80 40 0 15 94 80 159 9.28e-21 90.1
Msa0966440 MtrunA17_Chr8g0342281 42.029 69 40 0 1 69 66 134 5.46e-12 63.9
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0966440 AT2G07050.1 61.095 694 268 2 1 693 65 757 0.0 928
Msa0966440 AT2G07050.2 62.199 664 249 2 31 693 4 666 0.0 904
Msa0966440 AT1G78960.2 58.357 694 288 1 1 693 67 760 0.0 893
Msa0966440 AT1G78960.1 58.357 694 288 1 1 693 67 760 0.0 893
Msa0966440 AT1G78960.3 58.357 694 288 1 1 693 67 760 0.0 893
Msa0966440 AT1G78955.1 60.145 690 274 1 1 689 67 756 0.0 891
Msa0966440 AT1G78955.4 60.000 690 275 1 1 689 2 691 0.0 889
Msa0966440 AT1G78950.2 59.420 690 279 1 1 689 76 765 0.0 886
Msa0966440 AT1G78950.1 59.420 690 279 1 1 689 67 756 0.0 885
Msa0966440 AT1G78970.1 57.453 691 290 2 1 690 67 754 0.0 847
Msa0966440 AT1G78970.2 57.453 691 290 2 1 690 67 754 0.0 847
Msa0966440 AT1G78970.3 57.453 691 290 2 1 690 67 754 0.0 847
Msa0966440 AT1G66960.3 56.186 687 300 1 1 686 67 753 0.0 846
Msa0966440 AT1G66960.1 56.186 687 300 1 1 686 67 753 0.0 846
Msa0966440 AT1G66960.4 56.186 687 300 1 1 686 67 753 0.0 846
Msa0966440 AT1G66960.2 56.186 687 300 1 1 686 76 762 0.0 845
Msa0966440 AT1G78960.4 58.447 657 272 1 1 656 67 723 0.0 844
Msa0966440 AT1G78955.2 59.361 657 266 1 1 656 2 658 0.0 834
Msa0966440 AT1G78960.5 60.263 609 241 1 86 693 1 609 0.0 813
Msa0966440 AT3G45130.2 59.031 681 275 3 14 691 76 755 0.0 798
Msa0966440 AT3G45130.4 59.031 681 275 3 14 691 76 755 0.0 798
Msa0966440 AT3G45130.1 59.031 681 275 3 14 691 76 755 0.0 798
Msa0966440 AT3G45130.5 59.031 681 275 3 14 691 76 755 0.0 798
Msa0966440 AT3G45130.3 59.031 681 275 3 14 691 76 755 0.0 798
Msa0966440 AT1G78955.5 61.618 581 222 1 110 689 1 581 0.0 764
Msa0966440 AT1G78955.3 59.204 603 245 1 1 602 2 604 0.0 762
Msa0966440 AT1G78500.2 51.445 692 329 3 1 685 67 758 0.0 747
Msa0966440 AT1G78500.1 51.445 692 329 3 1 685 67 758 0.0 747
Msa0966440 AT5G36150.1 49.855 690 345 1 1 689 67 756 0.0 745
Msa0966440 AT5G36150.2 49.855 690 345 1 1 689 67 756 0.0 745
Msa0966440 AT5G48010.2 48.633 695 347 4 1 687 67 759 0.0 721
Msa0966440 AT4G15370.2 49.420 690 337 4 1 685 67 749 0.0 720
Msa0966440 AT4G15370.1 49.206 693 337 5 1 685 67 752 0.0 717
Msa0966440 AT4G15340.1 48.784 699 352 3 1 693 67 765 0.0 714
Msa0966440 AT5G42600.1 48.834 686 348 3 2 685 68 752 0.0 707
Msa0966440 AT5G48010.1 47.770 695 345 5 1 687 67 751 0.0 698
Msa0966440 AT3G29255.1 47.158 651 312 3 37 685 78 698 0.0 637
Msa0966440 AT4G15340.2 47.961 515 262 3 1 509 67 581 4.00e-175 513
Msa0966440 AT1G78480.1 53.968 63 29 0 72 134 114 176 3.18e-18 84.0

Find 213 sgRNAs with CRISPR-Local

Find 388 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATTTGCACGGTTGTCTTCT+AGG 0.195387 6_3:-94637006 None:intergenic
TGGGCTTTGTTGTCCCTTAT+CGG 0.261922 6_3:+94637043 Msa0966440:CDS
ATCCACTTCCACCAGAATTC+TGG 0.268631 6_3:+94634603 Msa0966440:CDS
CTCACTACCCAGGTGCTAAT+TGG 0.269588 6_3:+94637508 Msa0966440:three_prime_UTR
ATGCCCATGTCATATCTATA+TGG 0.269795 6_3:+94634786 Msa0966440:CDS
TTCCATCATGGGGAAAGTTC+TGG 0.280761 6_3:+94634450 Msa0966440:CDS
CCCGAATCCCTGATTACTTC+TGG 0.281207 6_3:+94635299 Msa0966440:CDS
CAACTACCTGTGAGGCCTTC+AGG 0.291777 6_3:-94635803 None:intergenic
GCCTTGTCTTCACCATCTTC+AGG 0.293538 6_3:-94634377 None:intergenic
CTTCTCTCAGTGATTTGATT+AGG 0.298981 6_3:-94634836 None:intergenic
GGATGAATAGGGGTGAATTT+TGG 0.300808 6_3:-94634632 None:intergenic
AGTTTAACTGCTGGTGGAAT+GGG 0.308591 6_3:-94632482 None:intergenic
TTTGGTAGAAACCAGAATTC+TGG 0.308766 6_3:-94634614 None:intergenic
CAATGGAGAGATGCAGAAAT+TGG 0.310238 6_3:+94634399 Msa0966440:CDS
ATAATATATATACCTTGTTT+TGG 0.312394 6_3:-94636913 None:intergenic
AGAGAAGAAGATATCATAAC+AGG 0.329769 6_3:+94632506 Msa0966440:CDS
TTGTGCTATGACCCTCTATA+TGG 0.332950 6_3:-94634304 None:intergenic
TAACTTCATTCCACGGTGTA+TGG 0.336068 6_3:-94637201 None:intergenic
AGGTATGCACCTGGATGAAT+AGG 0.345041 6_3:-94634644 None:intergenic
GTAATGGCCCTCTATGTTAC+AGG 0.353508 6_3:+94632835 Msa0966440:CDS
TTCGATATGATGAGTAGTTC+AGG 0.355276 6_3:-94637398 None:intergenic
CATAACATATCTTGAATCAT+AGG 0.357423 6_3:-94635067 None:intergenic
TTCAATGAAATGAATTGCTT+TGG 0.360615 6_3:-94636558 None:intergenic
ACAATTCAAGGTGCAGCATT+TGG 0.361763 6_3:-94637480 None:intergenic
ACTCCACAGGTACGGCTGTT+GGG 0.364012 6_3:+94636736 Msa0966440:intron
CTATGATTCAAGATATGTTA+TGG 0.368024 6_3:+94635068 Msa0966440:CDS
AGTTTGTATGCCTCTGAGTT+CGG 0.368801 6_3:-94635268 None:intergenic
AAATTCTTACAGTTGGTTAG+AGG 0.371127 6_3:+94636178 Msa0966440:CDS
GTTTGTATGCCTCTGAGTTC+GGG 0.373213 6_3:-94635267 None:intergenic
CCTTGACCATGGTGGTTTAG+TGG 0.374435 6_3:+94634424 Msa0966440:CDS
TTCCAGTTGATTTGATCATA+AGG 0.375182 6_3:-94634873 None:intergenic
AACCTTAGCAATAGTATTCC+GGG 0.376806 6_3:-94634901 None:intergenic
GGATCCCTTGATGAGGTTCT+AGG 0.377958 6_3:+94632856 Msa0966440:CDS
GCCAGAAGTAATCAGGGATT+CGG 0.379265 6_3:-94635300 None:intergenic
TCTGCAAGCCAGAAGTAATC+AGG 0.379292 6_3:-94635307 None:intergenic
CAGTTTAACTGCTGGTGGAA+TGG 0.379805 6_3:-94632483 None:intergenic
TTGTCAAAGCAGCTTCCTAA+TGG 0.380943 6_3:+94636863 Msa0966440:CDS
CTGCCAGAAAATACAAAATT+CGG 0.382313 6_3:-94637575 None:intergenic
ATCGAAACATCTTTCCCATA+TGG 0.386037 6_3:+94637415 Msa0966440:CDS
TTGTTGTCCCTTATCGGTGC+AGG 0.386134 6_3:+94637049 Msa0966440:CDS
TGTCAAAGCAGCTTCCTAAT+GGG 0.387123 6_3:+94636864 Msa0966440:CDS
AATAATGAATGCAGAGCTTT+GGG 0.387482 6_3:+94635685 Msa0966440:intron
TATATATTGCGTTTCTGAAA+AGG 0.392904 6_3:-94637705 None:intergenic
AACCTTATGATCAAATCAAC+TGG 0.400633 6_3:+94634871 Msa0966440:CDS
TTTCCTTAGCTCTATGAGTT+GGG 0.400737 6_3:-94636520 None:intergenic
TAATAATGAATGCAGAGCTT+TGG 0.407402 6_3:+94635684 Msa0966440:intron
TAATGGCGGGTTCCCTGCTT+GGG 0.410324 6_3:+94636148 Msa0966440:CDS
TATGATTCAAGATATGTTAT+GGG 0.411393 6_3:+94635069 Msa0966440:CDS
ATACTCTCCCAGAGCCCATA+TGG 0.417018 6_3:-94637430 None:intergenic
GGTATGCACCTGGATGAATA+GGG 0.417291 6_3:-94634643 None:intergenic
GAGGGTCATAGCACAATGTT+TGG 0.419263 6_3:+94634311 Msa0966440:CDS
CATCTTTCCCATATGGGCTC+TGG 0.420694 6_3:+94637422 Msa0966440:CDS
GTAGCTTTGTGAAGAGATAC+AGG 0.421470 6_3:-94636496 None:intergenic
GATTTGATTAGGTCAGTGAT+AGG 0.421520 6_3:-94634825 None:intergenic
CACTGGCCTGCAGAATCTGC+TGG 0.422487 6_3:+94632596 Msa0966440:CDS
TCTTCTCTCAGTTTAACTGC+TGG 0.428487 6_3:-94632491 None:intergenic
TACTTCTGGCTTGCAGAAGA+TGG 0.431129 6_3:+94635313 Msa0966440:CDS
AAACCTTAGCAATAGTATTC+CGG 0.434367 6_3:-94634902 None:intergenic
TCTCTCAGTTTAACTGCTGG+TGG 0.434390 6_3:-94632488 None:intergenic
ATTTCCTTAGCTCTATGAGT+TGG 0.436325 6_3:-94636521 None:intergenic
AACCTGCCCTGCACCGATAA+GGG 0.436795 6_3:-94637056 None:intergenic
TCCATCATGGGGAAAGTTCT+GGG 0.438199 6_3:+94634451 Msa0966440:CDS
TAACCTGCCCTGCACCGATA+AGG 0.438248 6_3:-94637057 None:intergenic
TTGAAGACACACTGATTGAG+AGG 0.442774 6_3:+94636325 Msa0966440:CDS
CCAGAAGTAATCAGGGATTC+GGG 0.443793 6_3:-94635299 None:intergenic
ATGCAACTACAGGAGATAAC+AGG 0.444350 6_3:+94637354 Msa0966440:intron
GTTTAGTGGCTATTCCATCA+TGG 0.446920 6_3:+94634438 Msa0966440:CDS
TAATGCCTTCTGTCTAAGCT+TGG 0.447789 6_3:-94635140 None:intergenic
CAAATTTAGTTCAAACTTCG+TGG 0.454847 6_3:+94637023 Msa0966440:CDS
ATAGAATACCAGGATCCATC+AGG 0.456520 6_3:-94636593 None:intergenic
GTAATGGCGGGTTCCCTGCT+TGG 0.457885 6_3:+94636147 Msa0966440:CDS
AAAATGCCAACTGATCTTGT+TGG 0.460164 6_3:+94636062 Msa0966440:CDS
ATTATGTTTGATAGCGCGTT+GGG 0.462799 6_3:+94635237 Msa0966440:CDS
AGCCTCAAAATTCTTACAGT+TGG 0.465115 6_3:+94636171 Msa0966440:CDS
AACCAGAATTCTGGTGGAAG+TGG 0.466445 6_3:-94634605 None:intergenic
TCGAAACATCTTTCCCATAT+GGG 0.466714 6_3:+94637416 Msa0966440:CDS
TACTCCACAGGTACGGCTGT+TGG 0.468900 6_3:+94636735 Msa0966440:intron
TGGCACTTGGTTTGCTGTAG+AGG 0.475158 6_3:+94636775 Msa0966440:CDS
TGCCCATGTCATATCTATAT+GGG 0.475927 6_3:+94634787 Msa0966440:CDS
AGATGGAGATTTCCCACAAC+AGG 0.476470 6_3:+94637244 Msa0966440:CDS
CACAAAACCCTGATGGATCC+TGG 0.477094 6_3:+94636585 Msa0966440:CDS
AACAGTAGATACCTTTGCAT+TGG 0.479394 6_3:+94635199 Msa0966440:CDS
AACATAAGAAGGAAATTGTT+CGG 0.480544 6_3:+94632884 Msa0966440:CDS
ATCAATTCACAGATGGAAGA+TGG 0.483390 6_3:+94637227 Msa0966440:CDS
ACCCAGAACTTTCCCCATGA+TGG 0.487722 6_3:-94634452 None:intergenic
GGCACTTGGTTTGCTGTAGA+GGG 0.487793 6_3:+94636776 Msa0966440:CDS
ATCTTTCCCATATGGGCTCT+GGG 0.491199 6_3:+94637423 Msa0966440:CDS
ATGGGGATTTCTTTATCATG+TGG 0.493396 6_3:+94635087 Msa0966440:CDS
GTCCCTTATCGGTGCAGGGC+AGG 0.495376 6_3:+94637054 Msa0966440:CDS
ACAATTTCCTTCTTATGTTG+AGG 0.498096 6_3:-94632880 None:intergenic
AATAGGTATGTTGAGTGCAC+TGG 0.502674 6_3:+94636458 Msa0966440:intron
CGCTACAGAGCAGTAATGGC+GGG 0.502708 6_3:+94636135 Msa0966440:CDS
CTCTCGCTACAGAGCAGTAA+TGG 0.505047 6_3:+94636131 Msa0966440:CDS
CATTGATTACAACAATAAGA+AGG 0.505283 6_3:+94632534 Msa0966440:CDS
TCTAGGACCTCAACATAAGA+AGG 0.512830 6_3:+94632873 Msa0966440:CDS
TGAAATGAATTGCTTTGGAA+AGG 0.513073 6_3:-94636553 None:intergenic
TTTAGTGGCTATTCCATCAT+GGG 0.514005 6_3:+94634439 Msa0966440:CDS
TCACGCTATATATAGGTACT+TGG 0.516796 6_3:+94634557 Msa0966440:intron
TAGTGAGTAGTTACAATTCA+AGG 0.517855 6_3:-94637492 None:intergenic
GTGTCTTCAAAGAATTCAGT+TGG 0.517960 6_3:-94636312 None:intergenic
GAATTTGTGCAGACAAGACT+CGG 0.520633 6_3:-94637458 None:intergenic
AAAGGCCAGCAATTCAGAAA+AGG 0.520870 6_3:-94635115 None:intergenic
CTCCACAGGTACGGCTGTTG+GGG 0.523437 6_3:+94636737 Msa0966440:intron
GACAGAACGAAGATGGTGGA+TGG 0.523858 6_3:+94634276 Msa0966440:intron
ATATCTTGAATCATAGGATG+TGG 0.524227 6_3:-94635061 None:intergenic
TTCAAGCTCATGATGGCCAC+TGG 0.530366 6_3:+94632579 Msa0966440:CDS
GTCTCTGACTGCACCGCAGA+AGG 0.530369 6_3:+94635912 Msa0966440:CDS
CTACACTAATTACCTGTTGT+GGG 0.532832 6_3:-94637256 None:intergenic
ACAGAACGAAGATGGTGGAT+GGG 0.533685 6_3:+94634277 Msa0966440:intron
GCTACACTAATTACCTGTTG+TGG 0.534062 6_3:-94637257 None:intergenic
TATATTGCACTGAGGCTGCT+TGG 0.534774 6_3:+94634347 Msa0966440:CDS
TCTATATGGGAAGAAGTTTG+TGG 0.537189 6_3:+94634800 Msa0966440:CDS
AAATCAACTGGAACAAAGCC+CGG 0.537569 6_3:+94634883 Msa0966440:CDS
TCGATATGATGAGTAGTTCA+GGG 0.538351 6_3:-94637397 None:intergenic
TTTGCAAGGAAGGACTGTTA+CGG 0.538358 6_3:-94636823 None:intergenic
AACTTCATTCCACGGTGTAT+GGG 0.539799 6_3:-94637200 None:intergenic
TACTCTCCCAGAGCCCATAT+GGG 0.543860 6_3:-94637429 None:intergenic
TGTTGTCCCTTATCGGTGCA+GGG 0.544685 6_3:+94637050 Msa0966440:CDS
AGATAACAGGAGTATTTATG+AGG 0.545080 6_3:+94637367 Msa0966440:CDS
GTTAATAATCAATTCACAGA+TGG 0.545863 6_3:+94637220 Msa0966440:CDS
TGTAACGTGAGTGAAGAGTA+TGG 0.547729 6_3:+94635753 Msa0966440:CDS
TGACTTCCTGAAGGCCTCAC+AGG 0.548212 6_3:+94635797 Msa0966440:CDS
TGGGGATTTCTTTATCATGT+GGG 0.548896 6_3:+94635088 Msa0966440:CDS
TGGGGAATTTGCTATACGTA+TGG 0.549854 6_3:+94636755 Msa0966440:CDS
GCACTGAGGCTGCTTGGAGA+AGG 0.550449 6_3:+94634353 Msa0966440:CDS
CTTGGAGAAGGACCTGAAGA+TGG 0.550707 6_3:+94634365 Msa0966440:CDS
AAATTTAGTTCAAACTTCGT+GGG 0.551738 6_3:+94637024 Msa0966440:CDS
AGCCCGGAATACTATTGCTA+AGG 0.551892 6_3:+94634899 Msa0966440:CDS
TCTCAATGCATGACCAAGGT+TGG 0.552996 6_3:+94635886 Msa0966440:CDS
CAGAACGAAGATGGTGGATG+GGG 0.555253 6_3:+94634278 Msa0966440:intron
AGAAGATGGCTTGAAAATCC+AGG 0.558427 6_3:+94635327 Msa0966440:CDS
CTATATGGGAAGAAGTTTGT+GGG 0.559860 6_3:+94634801 Msa0966440:CDS
TTTGCTATACGTATGGCACT+TGG 0.562241 6_3:+94636762 Msa0966440:CDS
ATTTGATTAGGTCAGTGATA+GGG 0.563688 6_3:-94634824 None:intergenic
TGATTATTAACTTCATTCCA+CGG 0.564716 6_3:-94637208 None:intergenic
AAAGGGCCAGCAGATTCTGC+AGG 0.566025 6_3:-94632602 None:intergenic
TCCTCAATTCAAGCTCATGA+TGG 0.566026 6_3:+94632572 Msa0966440:CDS
GAAAACACACAAAACCCTGA+TGG 0.566223 6_3:+94636578 Msa0966440:CDS
CAGGTAGTTGAAAATCCATC+CGG 0.568896 6_3:+94635816 Msa0966440:CDS
AAGTTTGAACTAAATTTGCA+CGG 0.573160 6_3:-94637018 None:intergenic
ATTCCACGGTGTATGGGTGT+AGG 0.573394 6_3:-94637194 None:intergenic
GTACATTGCTTTGAACTCAC+CGG 0.573832 6_3:-94635835 None:intergenic
TGGATGGGGATTCCATATAG+AGG 0.575350 6_3:+94634292 Msa0966440:CDS
TTCTGTCTAAGCTTGGTGAA+AGG 0.576271 6_3:-94635133 None:intergenic
GCCATCATGAGCTTGAATTG+AGG 0.576423 6_3:-94632573 None:intergenic
ATTGATTACAACAATAAGAA+GGG 0.576445 6_3:+94632535 Msa0966440:CDS
TATTATGTTTGATAGCGCGT+TGG 0.580947 6_3:+94635236 Msa0966440:CDS
AGATGGTGAAGACAAGGCAA+TGG 0.581885 6_3:+94634382 Msa0966440:CDS
AAATTCACCCCTATTCATCC+AGG 0.582742 6_3:+94634635 Msa0966440:CDS
GTGTACAACCAATTAGCACC+TGG 0.583999 6_3:-94637516 None:intergenic
CAAGGGATCCTGTAACATAG+AGG 0.586621 6_3:-94632843 None:intergenic
TCATGTGCTTTCCGAAGTGT+AGG 0.587144 6_3:-94635777 None:intergenic
TTTCACCAAGCTTAGACAGA+AGG 0.587774 6_3:+94635135 Msa0966440:CDS
TCTTTCTTCAAGAATATCAT+CGG 0.588040 6_3:+94637637 Msa0966440:three_prime_UTR
ATTGCTTTGAACTCACCGGA+TGG 0.590740 6_3:-94635831 None:intergenic
GTCAAAGCAGCTTCCTAATG+GGG 0.591159 6_3:+94636865 Msa0966440:CDS
GGTAGAAACCAGAATTCTGG+TGG 0.591415 6_3:-94634611 None:intergenic
GAGGTCCTAGAACCTCATCA+AGG 0.592674 6_3:-94632861 None:intergenic
CCACTAAACCACCATGGTCA+AGG 0.595228 6_3:-94634424 None:intergenic
TTGCATTGGAAGTGTAGAGA+AGG 0.596365 6_3:+94635213 Msa0966440:CDS
CTGCAAGCCAGAAGTAATCA+GGG 0.596867 6_3:-94635306 None:intergenic
ATGATTCAAGATATGTTATG+GGG 0.597243 6_3:+94635070 Msa0966440:CDS
CTTCCCATATAGATATGACA+TGG 0.597880 6_3:-94634790 None:intergenic
ACCTGAAGATGGTGAAGACA+AGG 0.599140 6_3:+94634376 Msa0966440:CDS
AAGAGTATGGTCCTACACTT+CGG 0.599344 6_3:+94635766 Msa0966440:CDS
CAGCAGATTCTGCAGGCCAG+TGG 0.600116 6_3:-94632595 None:intergenic
CTGCACCGCAGAAGGACTCA+AGG 0.601671 6_3:+94635920 Msa0966440:CDS
ATGGGGAAAGTTCTGGGTCA+CGG 0.605144 6_3:+94634457 Msa0966440:CDS
GTTTAACTGCTGGTGGAATG+GGG 0.606958 6_3:-94632481 None:intergenic
AGTCAGAGACTTGCCAACCT+TGG 0.608423 6_3:-94635899 None:intergenic
TCGGTATTTATATAATCACC+AGG 0.608586 6_3:+94632903 Msa0966440:CDS
ACACCCAACTCATAGAGCTA+AGG 0.609087 6_3:+94636517 Msa0966440:CDS
TCTCTACACTTCCAATGCAA+AGG 0.614361 6_3:-94635210 None:intergenic
CTTGGAGTTTATGAGTGGCG+AGG 0.615223 6_3:+94634575 Msa0966440:CDS
TCAAAGCAGCTTCCTAATGG+GGG 0.615650 6_3:+94636866 Msa0966440:CDS
AAGGGATCCTGTAACATAGA+GGG 0.615864 6_3:-94632842 None:intergenic
GTAGAGGGACTAACAGCTTG+TGG 0.616366 6_3:+94636791 Msa0966440:CDS
GGAAAATGTTGTGCTACTGT+CGG 0.617544 6_3:+94634754 Msa0966440:CDS
TGAAGACACACTGATTGAGA+GGG 0.617821 6_3:+94636326 Msa0966440:CDS
TTATTTGTCAAGCCAAAACA+AGG 0.619533 6_3:+94636901 Msa0966440:CDS
ATGAGGTGACAGAACGAAGA+TGG 0.622105 6_3:+94634269 Msa0966440:intron
AATTAATCATGTGCGTTACG+AGG 0.622234 6_3:+94635171 Msa0966440:CDS
GACACATATGCAAAGGATCG+TGG 0.624587 6_3:+94635859 Msa0966440:CDS
GAAAGCACATGACTTCCTGA+AGG 0.625323 6_3:+94635788 Msa0966440:CDS
GAGCTTTGGGTGTCAAATGT+GGG 0.627157 6_3:+94635698 Msa0966440:intron
TATCTTGAATCATAGGATGT+GGG 0.628079 6_3:-94635060 None:intergenic
GAGAAGAAGATATCATAACA+GGG 0.628365 6_3:+94632507 Msa0966440:CDS
AGGTACTTGGAGTTTATGAG+TGG 0.631997 6_3:+94634570 Msa0966440:intron
AGAGCTTTGGGTGTCAAATG+TGG 0.632997 6_3:+94635697 Msa0966440:intron
AGGTCCTAGAACCTCATCAA+GGG 0.639948 6_3:-94632860 None:intergenic
ATGTACAGACACATATGCAA+AGG 0.641280 6_3:+94635852 Msa0966440:CDS
TAAAACCTTGAGTCCTTCTG+CGG 0.644286 6_3:-94635925 None:intergenic
TGTTACAGGATCCCTTGATG+AGG 0.647790 6_3:+94632849 Msa0966440:CDS
TCGCTACAGAGCAGTAATGG+CGG 0.652702 6_3:+94636134 Msa0966440:CDS
GTATGCACCTGGATGAATAG+GGG 0.653207 6_3:-94634642 None:intergenic
CATTACTGCTCTGTAGCGAG+AGG 0.654544 6_3:-94636130 None:intergenic
TAGAATACCAGGATCCATCA+GGG 0.660292 6_3:-94636592 None:intergenic
TTAGTGGCTATTCCATCATG+GGG 0.661744 6_3:+94634440 Msa0966440:CDS
CAAAGCAGCTTCCTAATGGG+GGG 0.662526 6_3:+94636867 Msa0966440:CDS
AATTGGATCCTTGACCATGG+TGG 0.663800 6_3:+94634416 Msa0966440:CDS
GGATGGGGATTCCATATAGA+GGG 0.664160 6_3:+94634293 Msa0966440:CDS
AGGTGACAGAACGAAGATGG+TGG 0.664546 6_3:+94634272 Msa0966440:intron
TGTACAACCAATTAGCACCT+GGG 0.664652 6_3:-94637515 None:intergenic
TTCCCATATAGATATGACAT+GGG 0.670291 6_3:-94634789 None:intergenic
AGAAGAAGATATCATAACAG+GGG 0.679958 6_3:+94632508 Msa0966440:CDS
TAGCTTTGTGAAGAGATACA+GGG 0.686063 6_3:-94636495 None:intergenic
GGTTGAAGACCCGAACTCAG+AGG 0.694258 6_3:+94635258 Msa0966440:CDS
ACATTCTCAATGCATGACCA+AGG 0.704194 6_3:+94635882 Msa0966440:CDS
ATTGTAACTACTCACTACCC+AGG 0.711259 6_3:+94637498 Msa0966440:three_prime_UTR
GAATAGCCACTAAACCACCA+TGG 0.737768 6_3:-94634430 None:intergenic
AGAAATTGGATCCTTGACCA+TGG 0.742771 6_3:+94634413 Msa0966440:CDS
GATCCTACACCCATACACCG+TGG 0.761975 6_3:+94637191 Msa0966440:CDS
CATTGAGCTATATTGCACTG+AGG 0.768445 6_3:+94634339 Msa0966440:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTATACAAAAGAGAAAATT+TGG + chr6_3:94632688-94632707 Msa0966440:intron 15.0%
!!! GTTATTTGTTTTTTTTTTCA+GGG - chr6_3:94633008-94633027 None:intergenic 15.0%
!!! AGTTATTTGTTTTTTTTTTC+AGG - chr6_3:94633009-94633028 None:intergenic 15.0%
!! ATATAAGTATATATATAGCA+AGG - chr6_3:94633243-94633262 None:intergenic 15.0%
!! GTTATTACTGAATAATAAAA+TGG - chr6_3:94634003-94634022 None:intergenic 15.0%
!! AAGATATAGATAATATAGAT+TGG - chr6_3:94634942-94634961 None:intergenic 15.0%
!! ATAAAAATACAATATTAACC+TGG - chr6_3:94635348-94635367 None:intergenic 15.0%
!! TAAATATGATTAGTATCTTT+AGG + chr6_3:94635420-94635439 Msa0966440:intron 15.0%
!! AAAATCTGATTCTATTATAT+GGG - chr6_3:94635558-94635577 None:intergenic 15.0%
!!! TAAATGTTAACTATTTTTGT+AGG + chr6_3:94635967-94635986 Msa0966440:intron 15.0%
!!! ATAATATATATACCTTGTTT+TGG - chr6_3:94636916-94636935 None:intergenic 15.0%
!!! TTTTCCTTGTTAATTTAAAT+AGG + chr6_3:94636973-94636992 Msa0966440:intron 15.0%
!! TATACCTATTTAAATTAACA+AGG - chr6_3:94636980-94636999 None:intergenic 15.0%
!! AGAATAGTATATAAAATTGA+TGG - chr6_3:94637295-94637314 None:intergenic 15.0%
!! ATTGATTACAACAATAAGAA+GGG + chr6_3:94632535-94632554 Msa0966440:CDS 20.0%
!!! TCTTTTGTATAAAGATCAAA+GGG - chr6_3:94632681-94632700 None:intergenic 20.0%
!!! TTTTATATATAAGAAAAGGC+TGG - chr6_3:94632733-94632752 None:intergenic 20.0%
!!! CCAGTTTTATATATAAGAAA+AGG - chr6_3:94632737-94632756 None:intergenic 20.0%
!!! CCTTTTCTTATATATAAAAC+TGG + chr6_3:94632734-94632753 Msa0966440:intron 20.0%
!!! AACAATTATAGTTTTGAAGA+GGG - chr6_3:94633112-94633131 None:intergenic 20.0%
!!! AAACAATTATAGTTTTGAAG+AGG - chr6_3:94633113-94633132 None:intergenic 20.0%
!!! TTCATCTTATTAGTTTTTCA+GGG + chr6_3:94633559-94633578 Msa0966440:intron 20.0%
!! AGTAATTGCTAAAAAATACA+AGG + chr6_3:94633597-94633616 Msa0966440:intron 20.0%
!! TCAAATGCAATTAAGAAAAA+GGG - chr6_3:94634067-94634086 None:intergenic 20.0%
!! TTCAAATGCAATTAAGAAAA+AGG - chr6_3:94634068-94634087 None:intergenic 20.0%
!! TAATACTTACTAGACAAAAA+GGG - chr6_3:94634136-94634155 None:intergenic 20.0%
!! ATAATACTTACTAGACAAAA+AGG - chr6_3:94634137-94634156 None:intergenic 20.0%
!! TCAAATTAAATATGCATTCA+GGG + chr6_3:94634733-94634752 Msa0966440:intron 20.0%
!! TAGATATATGAAACTGAAAA+TGG + chr6_3:94635010-94635029 Msa0966440:intron 20.0%
!! TATGATTCAAGATATGTTAT+GGG + chr6_3:94635069-94635088 Msa0966440:CDS 20.0%
!! AAAATTAAATGAAATGTTGC+AGG - chr6_3:94635389-94635408 None:intergenic 20.0%
!! AAGCTAAAGAAATATAATCA+AGG - chr6_3:94635462-94635481 None:intergenic 20.0%
!! TTGATTCTTTCTCTAATTAT+TGG + chr6_3:94635493-94635512 Msa0966440:intron 20.0%
!! AAATCTGATTCTATTATATG+GGG - chr6_3:94635557-94635576 None:intergenic 20.0%
!! GAAAATCTGATTCTATTATA+TGG - chr6_3:94635559-94635578 None:intergenic 20.0%
!! TCCTTCAAAAAAAAAAATCA+TGG + chr6_3:94635622-94635641 Msa0966440:intron 20.0%
!!! ACCATGATTTTTTTTTTTGA+AGG - chr6_3:94635626-94635645 None:intergenic 20.0%
!!! TTAACAACTGTTAATTTTAG+TGG - chr6_3:94635660-94635679 None:intergenic 20.0%
!!! TTTTTCAAAATATACATGCA+TGG + chr6_3:94635990-94636009 Msa0966440:intron 20.0%
!!! GACTTTCTTTAATTTTTGTT+TGG + chr6_3:94636672-94636691 Msa0966440:intron 20.0%
!! CATAATTTATAATTACCAAG+AGG - chr6_3:94637116-94637135 None:intergenic 20.0%
!!! TGAATGTTTTTGTTACAAAA+AGG + chr6_3:94637160-94637179 Msa0966440:intron 20.0%
!! TAGTATATAAAATTGATGGA+AGG - chr6_3:94637291-94637310 None:intergenic 20.0%
!! AAATTAAAAAATGCAACTAC+AGG + chr6_3:94637344-94637363 Msa0966440:intron 20.0%
!! CATTGATTACAACAATAAGA+AGG + chr6_3:94632534-94632553 Msa0966440:CDS 25.0%
! ATGGTTGAACAAAAAACAAA+GGG - chr6_3:94632622-94632641 None:intergenic 25.0%
! AATGGTTGAACAAAAAACAA+AGG - chr6_3:94632623-94632642 None:intergenic 25.0%
!!! TTTGTTTTTTGTTCAACCAT+TGG + chr6_3:94632622-94632641 Msa0966440:CDS 25.0%
!! CTCTTTTGTATAAAGATCAA+AGG - chr6_3:94632682-94632701 None:intergenic 25.0%
! ACTAATTACTATATGCATAC+AGG + chr6_3:94632813-94632832 Msa0966440:intron 25.0%
! AACATAAGAAGGAAATTGTT+CGG + chr6_3:94632884-94632903 Msa0966440:CDS 25.0%
! ATTTGATCTCAATTATTCTG+AGG - chr6_3:94632980-94632999 None:intergenic 25.0%
! TAACTGTAATCCTAACAAAT+TGG + chr6_3:94633024-94633043 Msa0966440:intron 25.0%
! AACTGTAATCCTAACAAATT+GGG + chr6_3:94633025-94633044 Msa0966440:intron 25.0%
!! TATGATTATCCCAATTTGTT+AGG - chr6_3:94633037-94633056 None:intergenic 25.0%
!!! ACAATTATAGTTTTGAAGAG+GGG - chr6_3:94633111-94633130 None:intergenic 25.0%
! TATATATATAGCAAGGAGTA+GGG - chr6_3:94633236-94633255 None:intergenic 25.0%
! TATATATAAGCACTTCATTG+AGG + chr6_3:94633258-94633277 Msa0966440:intron 25.0%
!!! GTTCATCTTATTAGTTTTTC+AGG + chr6_3:94633558-94633577 Msa0966440:intron 25.0%
!! AAGGATGTTTATTTAGGTTT+AGG - chr6_3:94633631-94633650 None:intergenic 25.0%
! AGTGTAAAGGATGTTTATTT+AGG - chr6_3:94633637-94633656 None:intergenic 25.0%
! CAATGTTTGAATTTGATGAA+TGG + chr6_3:94633772-94633791 Msa0966440:intron 25.0%
!!! AATTTGATGAATGGTGTTAT+AGG + chr6_3:94633781-94633800 Msa0966440:intron 25.0%
!!! GGTGAAATAATCTTTTTTTG+CGG + chr6_3:94633938-94633957 Msa0966440:intron 25.0%
! AATAACTTATATGCGAATTG+TGG + chr6_3:94634017-94634036 Msa0966440:intron 25.0%
! CAAATGCAATTAAGAAAAAG+GGG - chr6_3:94634066-94634085 None:intergenic 25.0%
!!! ATGCATATTTAATTTGACCA+AGG - chr6_3:94634730-94634749 None:intergenic 25.0%
! GTCAAATTAAATATGCATTC+AGG + chr6_3:94634732-94634751 Msa0966440:intron 25.0%
! CATAACATATCTTGAATCAT+AGG - chr6_3:94635070-94635089 None:intergenic 25.0%
! CTATGATTCAAGATATGTTA+TGG + chr6_3:94635068-94635087 Msa0966440:CDS 25.0%
! ATGATTCAAGATATGTTATG+GGG + chr6_3:94635070-94635089 Msa0966440:CDS 25.0%
! TTTATTCATTCAACCAACTA+AGG + chr6_3:94635363-94635382 Msa0966440:intron 25.0%
! GTGTTCATTGTGAAATTAAT+AGG + chr6_3:94636441-94636460 Msa0966440:intron 25.0%
! TTCAATGAAATGAATTGCTT+TGG - chr6_3:94636561-94636580 None:intergenic 25.0%
! GTTTAACACAATAGATCATT+AGG - chr6_3:94636648-94636667 None:intergenic 25.0%
! AAGTTTGAACTAAATTTGCA+CGG - chr6_3:94637021-94637040 None:intergenic 25.0%
!! AAATTTAGTTCAAACTTCGT+GGG + chr6_3:94637024-94637043 Msa0966440:CDS 25.0%
! TGATTATTAACTTCATTCCA+CGG - chr6_3:94637211-94637230 None:intergenic 25.0%
! GTTAATAATCAATTCACAGA+TGG + chr6_3:94637220-94637239 Msa0966440:CDS 25.0%
!! TTTCCGAATTTTGTATTTTC+TGG + chr6_3:94637572-94637591 Msa0966440:three_prime_UTR 25.0%
! TTTGTAAAAAAACTGTCGAT+TGG + chr6_3:94637598-94637617 Msa0966440:three_prime_UTR 25.0%
! TCTTTCTTCAAGAATATCAT+CGG + chr6_3:94637637-94637656 Msa0966440:three_prime_UTR 25.0%
!! TATATATTGCGTTTCTGAAA+AGG - chr6_3:94637708-94637727 None:intergenic 25.0%
AGAGAAGAAGATATCATAAC+AGG + chr6_3:94632506-94632525 Msa0966440:CDS 30.0%
GAGAAGAAGATATCATAACA+GGG + chr6_3:94632507-94632526 Msa0966440:CDS 30.0%
AGAAGAAGATATCATAACAG+GGG + chr6_3:94632508-94632527 Msa0966440:CDS 30.0%
AGTTTCAATCGAAGATCAAA+GGG - chr6_3:94632658-94632677 None:intergenic 30.0%
TACTATATGCATACAGGTAA+TGG + chr6_3:94632819-94632838 Msa0966440:intron 30.0%
ACAATTTCCTTCTTATGTTG+AGG - chr6_3:94632883-94632902 None:intergenic 30.0%
TCGGTATTTATATAATCACC+AGG + chr6_3:94632903-94632922 Msa0966440:CDS 30.0%
TGCATGATTTACATAATACC+TGG - chr6_3:94632924-94632943 None:intergenic 30.0%
!!! CAATTATAGTTTTGAAGAGG+GGG - chr6_3:94633110-94633129 None:intergenic 30.0%
! ACATTGTCTGAAGCAAAATA+GGG - chr6_3:94633201-94633220 None:intergenic 30.0%
! AACATTGTCTGAAGCAAAAT+AGG - chr6_3:94633202-94633221 None:intergenic 30.0%
ATATATATAGCAAGGAGTAG+GGG - chr6_3:94633235-94633254 None:intergenic 30.0%
GTATATATATAGCAAGGAGT+AGG - chr6_3:94633237-94633256 None:intergenic 30.0%
TGTCTATTGTTTAGTGAAGA+TGG - chr6_3:94633345-94633364 None:intergenic 30.0%
AGCATCAAAGCTTCATTATA+TGG - chr6_3:94633431-94633450 None:intergenic 30.0%
!!! ATTAGTTTTTCAGGGAGAAT+AGG + chr6_3:94633567-94633586 Msa0966440:intron 30.0%
TTCTTTGTGATAGAGTGTAA+AGG - chr6_3:94633650-94633669 None:intergenic 30.0%
!! CACAAAGAAAGCATCATAAT+AGG + chr6_3:94633661-94633680 Msa0966440:intron 30.0%
CACAAACATTGCAAAACTTT+GGG - chr6_3:94633692-94633711 None:intergenic 30.0%
TCACAAACATTGCAAAACTT+TGG - chr6_3:94633693-94633712 None:intergenic 30.0%
AATTAAATAGCACACTAACC+AGG + chr6_3:94633860-94633879 Msa0966440:intron 30.0%
! ACCAGGATCAATTTAAGTTT+AGG + chr6_3:94633877-94633896 Msa0966440:intron 30.0%
TCCTAAACTTAAATTGATCC+TGG - chr6_3:94633881-94633900 None:intergenic 30.0%
AGGATTAAGCTAATTGTGTA+AGG + chr6_3:94633897-94633916 Msa0966440:intron 30.0%
TAAGCTAATTGTGTAAGGTT+TGG + chr6_3:94633902-94633921 Msa0966440:intron 30.0%
AATTAATGCAAGGAAGTCTT+AGG - chr6_3:94634093-94634112 None:intergenic 30.0%
TCAACTCATCGATAAAATGA+TGG + chr6_3:94634168-94634187 Msa0966440:intron 30.0%
TTGACAGTATATGACTTTCT+TGG - chr6_3:94634203-94634222 None:intergenic 30.0%
TTTCAATACCATTTGTGATG+AGG + chr6_3:94634252-94634271 Msa0966440:intron 30.0%
TAAGCAATCACGCTATATAT+AGG + chr6_3:94634550-94634569 Msa0966440:intron 30.0%
ATGGTTGCATATAGAAGTTA+AGG - chr6_3:94634693-94634712 None:intergenic 30.0%
TTCCCATATAGATATGACAT+GGG - chr6_3:94634792-94634811 None:intergenic 30.0%
ATTTGATTAGGTCAGTGATA+GGG - chr6_3:94634827-94634846 None:intergenic 30.0%
AACCTTATGATCAAATCAAC+TGG + chr6_3:94634871-94634890 Msa0966440:CDS 30.0%
!! TTCCAGTTGATTTGATCATA+AGG - chr6_3:94634876-94634895 None:intergenic 30.0%
AAACCTTAGCAATAGTATTC+CGG - chr6_3:94634905-94634924 None:intergenic 30.0%
TATCTTGAATCATAGGATGT+GGG - chr6_3:94635063-94635082 None:intergenic 30.0%
ATATCTTGAATCATAGGATG+TGG - chr6_3:94635064-94635083 None:intergenic 30.0%
GAGAAAGAATCAACTAAGAA+AGG - chr6_3:94635486-94635505 None:intergenic 30.0%
TCTAATTATTGGAACTGACT+AGG + chr6_3:94635504-94635523 Msa0966440:intron 30.0%
TAATAATGAATGCAGAGCTT+TGG + chr6_3:94635684-94635703 Msa0966440:intron 30.0%
AATAATGAATGCAGAGCTTT+GGG + chr6_3:94635685-94635704 Msa0966440:intron 30.0%
ATATTCATGAAAACACATGC+AGG + chr6_3:94636022-94636041 Msa0966440:intron 30.0%
TGATCTTGTTGGAGAAAAAT+TGG + chr6_3:94636073-94636092 Msa0966440:CDS 30.0%
! AACCAACTGTAAGAATTTTG+AGG - chr6_3:94636176-94636195 None:intergenic 30.0%
AAATTCTTACAGTTGGTTAG+AGG + chr6_3:94636178-94636197 Msa0966440:CDS 30.0%
!! TGAAATGAATTGCTTTGGAA+AGG - chr6_3:94636556-94636575 None:intergenic 30.0%
TAACACAATAGATCATTAGG+TGG - chr6_3:94636645-94636664 None:intergenic 30.0%
! AAATTGACAAGCTTTTTGCA+AGG - chr6_3:94636840-94636859 None:intergenic 30.0%
TTATTTGTCAAGCCAAAACA+AGG + chr6_3:94636901-94636920 Msa0966440:CDS 30.0%
! CAAATTTAGTTCAAACTTCG+TGG + chr6_3:94637023-94637042 Msa0966440:CDS 30.0%
ATTTATAATTACCAAGAGGC+AGG - chr6_3:94637112-94637131 None:intergenic 30.0%
!! AGATAACAGGAGTATTTATG+AGG + chr6_3:94637367-94637386 Msa0966440:CDS 30.0%
TAGTGAGTAGTTACAATTCA+AGG - chr6_3:94637495-94637514 None:intergenic 30.0%
CTGCCAGAAAATACAAAATT+CGG - chr6_3:94637578-94637597 None:intergenic 30.0%
GAGTTTCAATCGAAGATCAA+AGG - chr6_3:94632659-94632678 None:intergenic 35.0%
ACAAATATCAATACGTCCAG+TGG - chr6_3:94632792-94632811 None:intergenic 35.0%
TAGACTTAACTGAACGAGTT+AGG + chr6_3:94633055-94633074 Msa0966440:intron 35.0%
CTATAATTGTTTGTCGACAC+TGG + chr6_3:94633121-94633140 Msa0966440:intron 35.0%
! ATTGTCTGAAGCAAAATAGG+GGG - chr6_3:94633199-94633218 None:intergenic 35.0%
! CATTGTCTGAAGCAAAATAG+GGG - chr6_3:94633200-94633219 None:intergenic 35.0%
AACATCTTTGATTCTGAGCA+GGG - chr6_3:94633313-94633332 None:intergenic 35.0%
TATCTATGTTACCGATGTGA+AGG - chr6_3:94633399-94633418 None:intergenic 35.0%
! AACTATATGTGTTTCTGCCA+AGG + chr6_3:94633497-94633516 Msa0966440:intron 35.0%
! TGTCTTGAATTTTGAGCTGT+GGG - chr6_3:94633742-94633761 None:intergenic 35.0%
! ATGTCTTGAATTTTGAGCTG+TGG - chr6_3:94633743-94633762 None:intergenic 35.0%
ACTTATATGCGAATTGTGGT+CGG + chr6_3:94634021-94634040 Msa0966440:intron 35.0%
CATGTGTGGAAATTAATGCA+AGG - chr6_3:94634103-94634122 None:intergenic 35.0%
! CTCATCGATAAAATGATGGA+AGG + chr6_3:94634172-94634191 Msa0966440:intron 35.0%
TTTAGTGGCTATTCCATCAT+GGG + chr6_3:94634439-94634458 Msa0966440:CDS 35.0%
TCACGCTATATATAGGTACT+TGG + chr6_3:94634557-94634576 Msa0966440:intron 35.0%
TTTGGTAGAAACCAGAATTC+TGG - chr6_3:94634617-94634636 None:intergenic 35.0%
ACCTAGGTCCTACATTAATT+TGG + chr6_3:94634663-94634682 Msa0966440:intron 35.0%
CCTAGGTCCTACATTAATTT+GGG + chr6_3:94634664-94634683 Msa0966440:intron 35.0%
! CTAGGTCCTACATTAATTTG+GGG + chr6_3:94634665-94634684 Msa0966440:intron 35.0%
AAGGAACCCCAAATTAATGT+AGG - chr6_3:94634674-94634693 None:intergenic 35.0%
! CAAGGCATTAGACAAGATAA+TGG - chr6_3:94634712-94634731 None:intergenic 35.0%
CATTATCTTGTCTAATGCCT+TGG + chr6_3:94634710-94634729 Msa0966440:intron 35.0%
ATGCCCATGTCATATCTATA+TGG + chr6_3:94634786-94634805 Msa0966440:CDS 35.0%
TGCCCATGTCATATCTATAT+GGG + chr6_3:94634787-94634806 Msa0966440:CDS 35.0%
CTTCCCATATAGATATGACA+TGG - chr6_3:94634793-94634812 None:intergenic 35.0%
TCTATATGGGAAGAAGTTTG+TGG + chr6_3:94634800-94634819 Msa0966440:CDS 35.0%
CTATATGGGAAGAAGTTTGT+GGG + chr6_3:94634801-94634820 Msa0966440:CDS 35.0%
GATTTGATTAGGTCAGTGAT+AGG - chr6_3:94634828-94634847 None:intergenic 35.0%
CTTCTCTCAGTGATTTGATT+AGG - chr6_3:94634839-94634858 None:intergenic 35.0%
AACCTTAGCAATAGTATTCC+GGG - chr6_3:94634904-94634923 None:intergenic 35.0%
TGAAAATGGCATGCAATTTC+AGG + chr6_3:94635024-94635043 Msa0966440:intron 35.0%
ATGGGGATTTCTTTATCATG+TGG + chr6_3:94635087-94635106 Msa0966440:CDS 35.0%
TGGGGATTTCTTTATCATGT+GGG + chr6_3:94635088-94635107 Msa0966440:CDS 35.0%
AATTAATCATGTGCGTTACG+AGG + chr6_3:94635171-94635190 Msa0966440:CDS 35.0%
AACAGTAGATACCTTTGCAT+TGG + chr6_3:94635199-94635218 Msa0966440:CDS 35.0%
!! TATTATGTTTGATAGCGCGT+TGG + chr6_3:94635236-94635255 Msa0966440:CDS 35.0%
!! ATTATGTTTGATAGCGCGTT+GGG + chr6_3:94635237-94635256 Msa0966440:CDS 35.0%
ATGTACAGACACATATGCAA+AGG + chr6_3:94635852-94635871 Msa0966440:CDS 35.0%
AAAATGCCAACTGATCTTGT+TGG + chr6_3:94636062-94636081 Msa0966440:CDS 35.0%
! TTTTCTCCAACAAGATCAGT+TGG - chr6_3:94636071-94636090 None:intergenic 35.0%
AGCCTCAAAATTCTTACAGT+TGG + chr6_3:94636171-94636190 Msa0966440:CDS 35.0%
CATGCATGCATAGAATTAGT+TGG - chr6_3:94636273-94636292 None:intergenic 35.0%
GTGTCTTCAAAGAATTCAGT+TGG - chr6_3:94636315-94636334 None:intergenic 35.0%
!! TAGCTTTGTGAAGAGATACA+GGG - chr6_3:94636498-94636517 None:intergenic 35.0%
!! TTTCCTTAGCTCTATGAGTT+GGG - chr6_3:94636523-94636542 None:intergenic 35.0%
!! ATTTCCTTAGCTCTATGAGT+TGG - chr6_3:94636524-94636543 None:intergenic 35.0%
AGAGTAGAAGATAGAATACC+AGG - chr6_3:94636606-94636625 None:intergenic 35.0%
ATCAATTCACAGATGGAAGA+TGG + chr6_3:94637227-94637246 Msa0966440:CDS 35.0%
CTACACTAATTACCTGTTGT+GGG - chr6_3:94637259-94637278 None:intergenic 35.0%
TCGATATGATGAGTAGTTCA+GGG - chr6_3:94637400-94637419 None:intergenic 35.0%
TTCGATATGATGAGTAGTTC+AGG - chr6_3:94637401-94637420 None:intergenic 35.0%
ATCGAAACATCTTTCCCATA+TGG + chr6_3:94637415-94637434 Msa0966440:CDS 35.0%
TCGAAACATCTTTCCCATAT+GGG + chr6_3:94637416-94637435 Msa0966440:CDS 35.0%
AGTTTAACTGCTGGTGGAAT+GGG - chr6_3:94632485-94632504 None:intergenic 40.0%
TCTTCTCTCAGTTTAACTGC+TGG - chr6_3:94632494-94632513 None:intergenic 40.0%
TCCTCAATTCAAGCTCATGA+TGG + chr6_3:94632572-94632591 Msa0966440:CDS 40.0%
! TTGCTGATATTGATGACCAC+TGG + chr6_3:94632773-94632792 Msa0966440:intron 40.0%
AAGGGATCCTGTAACATAGA+GGG - chr6_3:94632845-94632864 None:intergenic 40.0%
! TCTAGGACCTCAACATAAGA+AGG + chr6_3:94632873-94632892 Msa0966440:CDS 40.0%
AGGAATGCAAATGTGAGTGA+TGG - chr6_3:94633158-94633177 None:intergenic 40.0%
GGAAGGAGTCAAAGTAGAAA+AGG - chr6_3:94633178-94633197 None:intergenic 40.0%
GGCAAAAATCCCTTTAGATG+AGG + chr6_3:94633279-94633298 Msa0966440:intron 40.0%
ACATCTTTGATTCTGAGCAG+GGG - chr6_3:94633312-94633331 None:intergenic 40.0%
CAACATCTTTGATTCTGAGC+AGG - chr6_3:94633314-94633333 None:intergenic 40.0%
TAAAGCTGCTGCATAGACAT+AGG - chr6_3:94633526-94633545 None:intergenic 40.0%
!! AGCAGCTTTAGAGTATACAG+AGG + chr6_3:94633536-94633555 Msa0966440:intron 40.0%
GATCTGATATCAACTTCCTC+TGG + chr6_3:94633711-94633730 Msa0966440:intron 40.0%
AGGTTTGGATAGACTAAGTG+AGG + chr6_3:94633917-94633936 Msa0966440:intron 40.0%
! AGGGTCTTTTGTATCATGTG+TGG - chr6_3:94634117-94634136 None:intergenic 40.0%
TTCTGTCACCTCATCACAAA+TGG - chr6_3:94634263-94634282 None:intergenic 40.0%
TTGTGCTATGACCCTCTATA+TGG - chr6_3:94634307-94634326 None:intergenic 40.0%
CATTGAGCTATATTGCACTG+AGG + chr6_3:94634339-94634358 Msa0966440:CDS 40.0%
CAATGGAGAGATGCAGAAAT+TGG + chr6_3:94634399-94634418 Msa0966440:CDS 40.0%
AGAAATTGGATCCTTGACCA+TGG + chr6_3:94634413-94634432 Msa0966440:CDS 40.0%
GTTTAGTGGCTATTCCATCA+TGG + chr6_3:94634438-94634457 Msa0966440:CDS 40.0%
TTAGTGGCTATTCCATCATG+GGG + chr6_3:94634440-94634459 Msa0966440:CDS 40.0%
AGGTACTTGGAGTTTATGAG+TGG + chr6_3:94634570-94634589 Msa0966440:intron 40.0%
! GGATGAATAGGGGTGAATTT+TGG - chr6_3:94634635-94634654 None:intergenic 40.0%
AAATTCACCCCTATTCATCC+AGG + chr6_3:94634635-94634654 Msa0966440:CDS 40.0%
CCCAAATTAATGTAGGACCT+AGG - chr6_3:94634667-94634686 None:intergenic 40.0%
! GGAAAATGTTGTGCTACTGT+CGG + chr6_3:94634754-94634773 Msa0966440:CDS 40.0%
AAATCAACTGGAACAAAGCC+CGG + chr6_3:94634883-94634902 Msa0966440:CDS 40.0%
AAATGGCATGCAATTTCAGG+AGG + chr6_3:94635027-94635046 Msa0966440:intron 40.0%
AAAGGCCAGCAATTCAGAAA+AGG - chr6_3:94635118-94635137 None:intergenic 40.0%
! TTCTGTCTAAGCTTGGTGAA+AGG - chr6_3:94635136-94635155 None:intergenic 40.0%
TTTCACCAAGCTTAGACAGA+AGG + chr6_3:94635135-94635154 Msa0966440:CDS 40.0%
TAATGCCTTCTGTCTAAGCT+TGG - chr6_3:94635143-94635162 None:intergenic 40.0%
TCTCTACACTTCCAATGCAA+AGG - chr6_3:94635213-94635232 None:intergenic 40.0%
! TTGCATTGGAAGTGTAGAGA+AGG + chr6_3:94635213-94635232 Msa0966440:CDS 40.0%
AGTTTGTATGCCTCTGAGTT+CGG - chr6_3:94635271-94635290 None:intergenic 40.0%
AGAAGATGGCTTGAAAATCC+AGG + chr6_3:94635327-94635346 Msa0966440:CDS 40.0%
TGTAACGTGAGTGAAGAGTA+TGG + chr6_3:94635753-94635772 Msa0966440:CDS 40.0%
! AAGAGTATGGTCCTACACTT+CGG + chr6_3:94635766-94635785 Msa0966440:CDS 40.0%
! TGGATTTTCAACTACCTGTG+AGG - chr6_3:94635814-94635833 None:intergenic 40.0%
CAGGTAGTTGAAAATCCATC+CGG + chr6_3:94635816-94635835 Msa0966440:CDS 40.0%
! GTACATTGCTTTGAACTCAC+CGG - chr6_3:94635838-94635857 None:intergenic 40.0%
ACATTCTCAATGCATGACCA+AGG + chr6_3:94635882-94635901 Msa0966440:CDS 40.0%
TAAAACCTTGAGTCCTTCTG+CGG - chr6_3:94635928-94635947 None:intergenic 40.0%
! CATTTTTGACAACAGGAGTG+CGG - chr6_3:94636048-94636067 None:intergenic 40.0%
! CAGTTGGCATTTTTGACAAC+AGG - chr6_3:94636055-94636074 None:intergenic 40.0%
! TTGAAGACACACTGATTGAG+AGG + chr6_3:94636325-94636344 Msa0966440:CDS 40.0%
! TGAAGACACACTGATTGAGA+GGG + chr6_3:94636326-94636345 Msa0966440:CDS 40.0%
AATAGGTATGTTGAGTGCAC+TGG + chr6_3:94636458-94636477 Msa0966440:intron 40.0%
!! GTAGCTTTGTGAAGAGATAC+AGG - chr6_3:94636499-94636518 None:intergenic 40.0%
GAAAACACACAAAACCCTGA+TGG + chr6_3:94636578-94636597 Msa0966440:CDS 40.0%
TAGAATACCAGGATCCATCA+GGG - chr6_3:94636595-94636614 None:intergenic 40.0%
ATAGAATACCAGGATCCATC+AGG - chr6_3:94636596-94636615 None:intergenic 40.0%
TAGTACATACACTACTCCAC+AGG + chr6_3:94636723-94636742 Msa0966440:intron 40.0%
!! TGGGGAATTTGCTATACGTA+TGG + chr6_3:94636755-94636774 Msa0966440:CDS 40.0%
! TTTGCTATACGTATGGCACT+TGG + chr6_3:94636762-94636781 Msa0966440:CDS 40.0%
TTTGCAAGGAAGGACTGTTA+CGG - chr6_3:94636826-94636845 None:intergenic 40.0%
! TGACAAGCTTTTTGCAAGGA+AGG - chr6_3:94636836-94636855 None:intergenic 40.0%
TTGTCAAAGCAGCTTCCTAA+TGG + chr6_3:94636863-94636882 Msa0966440:CDS 40.0%
TGTCAAAGCAGCTTCCTAAT+GGG + chr6_3:94636864-94636883 Msa0966440:CDS 40.0%
AATTTGCACGGTTGTCTTCT+AGG - chr6_3:94637009-94637028 None:intergenic 40.0%
AACTTCATTCCACGGTGTAT+GGG - chr6_3:94637203-94637222 None:intergenic 40.0%
TAACTTCATTCCACGGTGTA+TGG - chr6_3:94637204-94637223 None:intergenic 40.0%
GCTACACTAATTACCTGTTG+TGG - chr6_3:94637260-94637279 None:intergenic 40.0%
ATGCAACTACAGGAGATAAC+AGG + chr6_3:94637354-94637373 Msa0966440:intron 40.0%
GAATTTGTGCAGACAAGACT+CGG - chr6_3:94637461-94637480 None:intergenic 40.0%
ACAATTCAAGGTGCAGCATT+TGG - chr6_3:94637483-94637502 None:intergenic 40.0%
ATTGTAACTACTCACTACCC+AGG + chr6_3:94637498-94637517 Msa0966440:three_prime_UTR 40.0%
TGTACAACCAATTAGCACCT+GGG - chr6_3:94637518-94637537 None:intergenic 40.0%
GTTTAACTGCTGGTGGAATG+GGG - chr6_3:94632484-94632503 None:intergenic 45.0%
CAGTTTAACTGCTGGTGGAA+TGG - chr6_3:94632486-94632505 None:intergenic 45.0%
TCTCTCAGTTTAACTGCTGG+TGG - chr6_3:94632491-94632510 None:intergenic 45.0%
GCCATCATGAGCTTGAATTG+AGG - chr6_3:94632576-94632595 None:intergenic 45.0%
AAAGGGACTTCACTCACCAA+TGG - chr6_3:94632641-94632660 None:intergenic 45.0%
GTAATGGCCCTCTATGTTAC+AGG + chr6_3:94632835-94632854 Msa0966440:CDS 45.0%
CAAGGGATCCTGTAACATAG+AGG - chr6_3:94632846-94632865 None:intergenic 45.0%
TGTTACAGGATCCCTTGATG+AGG + chr6_3:94632849-94632868 Msa0966440:CDS 45.0%
AGGTCCTAGAACCTCATCAA+GGG - chr6_3:94632863-94632882 None:intergenic 45.0%
!!! GTTTTGAAGAGGGGGATGAA+TGG - chr6_3:94633102-94633121 None:intergenic 45.0%
! TGCAAATGTGAGTGATGGTG+AGG - chr6_3:94633153-94633172 None:intergenic 45.0%
! TCTGAAGCAAAATAGGGGGA+AGG - chr6_3:94633195-94633214 None:intergenic 45.0%
GGAAGGGATCCTCATCTAAA+GGG - chr6_3:94633291-94633310 None:intergenic 45.0%
TTTGATTCTGAGCAGGGGAA+GGG - chr6_3:94633307-94633326 None:intergenic 45.0%
TACCGATGTGAAGGAGGATA+CGG - chr6_3:94633390-94633409 None:intergenic 45.0%
CTATGTTACCGATGTGAAGG+AGG - chr6_3:94633396-94633415 None:intergenic 45.0%
TGCATAGACATAGGCTACCT+TGG - chr6_3:94633517-94633536 None:intergenic 45.0%
ATGAGGTGACAGAACGAAGA+TGG + chr6_3:94634269-94634288 Msa0966440:intron 45.0%
!! ACAGAACGAAGATGGTGGAT+GGG + chr6_3:94634277-94634296 Msa0966440:intron 45.0%
TGGATGGGGATTCCATATAG+AGG + chr6_3:94634292-94634311 Msa0966440:CDS 45.0%
GGATGGGGATTCCATATAGA+GGG + chr6_3:94634293-94634312 Msa0966440:CDS 45.0%
GAGGGTCATAGCACAATGTT+TGG + chr6_3:94634311-94634330 Msa0966440:CDS 45.0%
TATATTGCACTGAGGCTGCT+TGG + chr6_3:94634347-94634366 Msa0966440:CDS 45.0%
ACCTGAAGATGGTGAAGACA+AGG + chr6_3:94634376-94634395 Msa0966440:CDS 45.0%
AGATGGTGAAGACAAGGCAA+TGG + chr6_3:94634382-94634401 Msa0966440:CDS 45.0%
AATTGGATCCTTGACCATGG+TGG + chr6_3:94634416-94634435 Msa0966440:CDS 45.0%
GAATAGCCACTAAACCACCA+TGG - chr6_3:94634433-94634452 None:intergenic 45.0%
TTCCATCATGGGGAAAGTTC+TGG + chr6_3:94634450-94634469 Msa0966440:CDS 45.0%
TCCATCATGGGGAAAGTTCT+GGG + chr6_3:94634451-94634470 Msa0966440:CDS 45.0%
ATCCACTTCCACCAGAATTC+TGG + chr6_3:94634603-94634622 Msa0966440:CDS 45.0%
AACCAGAATTCTGGTGGAAG+TGG - chr6_3:94634608-94634627 None:intergenic 45.0%
GGTAGAAACCAGAATTCTGG+TGG - chr6_3:94634614-94634633 None:intergenic 45.0%
GTATGCACCTGGATGAATAG+GGG - chr6_3:94634645-94634664 None:intergenic 45.0%
GGTATGCACCTGGATGAATA+GGG - chr6_3:94634646-94634665 None:intergenic 45.0%
AGGTATGCACCTGGATGAAT+AGG - chr6_3:94634647-94634666 None:intergenic 45.0%
ATTCATCCAGGTGCATACCT+AGG + chr6_3:94634647-94634666 Msa0966440:intron 45.0%
AGCCCGGAATACTATTGCTA+AGG + chr6_3:94634899-94634918 Msa0966440:CDS 45.0%
TGCTAAGGTTTGTACGTGTG+TGG + chr6_3:94634914-94634933 Msa0966440:intron 45.0%
! GAGAGCCTTTTCTGAATTGC+TGG + chr6_3:94635110-94635129 Msa0966440:CDS 45.0%
GTTTGTATGCCTCTGAGTTC+GGG - chr6_3:94635270-94635289 None:intergenic 45.0%
CCAGAAGTAATCAGGGATTC+GGG - chr6_3:94635302-94635321 None:intergenic 45.0%
GCCAGAAGTAATCAGGGATT+CGG - chr6_3:94635303-94635322 None:intergenic 45.0%
CTGCAAGCCAGAAGTAATCA+GGG - chr6_3:94635309-94635328 None:intergenic 45.0%
TCTGCAAGCCAGAAGTAATC+AGG - chr6_3:94635310-94635329 None:intergenic 45.0%
!! TACTTCTGGCTTGCAGAAGA+TGG + chr6_3:94635313-94635332 Msa0966440:CDS 45.0%
GAAATGTTGCAGGCCTTAGT+TGG - chr6_3:94635379-94635398 None:intergenic 45.0%
!! AGAGCTTTGGGTGTCAAATG+TGG + chr6_3:94635697-94635716 Msa0966440:intron 45.0%
!! GAGCTTTGGGTGTCAAATGT+GGG + chr6_3:94635698-94635717 Msa0966440:intron 45.0%
TCATGTGCTTTCCGAAGTGT+AGG - chr6_3:94635780-94635799 None:intergenic 45.0%
! GAAAGCACATGACTTCCTGA+AGG + chr6_3:94635788-94635807 Msa0966440:CDS 45.0%
! ATTGCTTTGAACTCACCGGA+TGG - chr6_3:94635834-94635853 None:intergenic 45.0%
GACACATATGCAAAGGATCG+TGG + chr6_3:94635859-94635878 Msa0966440:CDS 45.0%
TCTCAATGCATGACCAAGGT+TGG + chr6_3:94635886-94635905 Msa0966440:CDS 45.0%
!!! AATTTTGAGGCTCCCAAGCA+GGG - chr6_3:94636163-94636182 None:intergenic 45.0%
ACACCCAACTCATAGAGCTA+AGG + chr6_3:94636517-94636536 Msa0966440:CDS 45.0%
CATACACTACTCCACAGGTA+CGG + chr6_3:94636728-94636747 Msa0966440:intron 45.0%
GTCAAAGCAGCTTCCTAATG+GGG + chr6_3:94636865-94636884 Msa0966440:CDS 45.0%
TCAAAGCAGCTTCCTAATGG+GGG + chr6_3:94636866-94636885 Msa0966440:CDS 45.0%
!! TGGGCTTTGTTGTCCCTTAT+CGG + chr6_3:94637043-94637062 Msa0966440:CDS 45.0%
AGATGGAGATTTCCCACAAC+AGG + chr6_3:94637244-94637263 Msa0966440:CDS 45.0%
ATCTTTCCCATATGGGCTCT+GGG + chr6_3:94637423-94637442 Msa0966440:CDS 45.0%
GTGTACAACCAATTAGCACC+TGG - chr6_3:94637519-94637538 None:intergenic 45.0%
!! AATTTAATATAAATTAATCA+TGG + chr6_3:94635589-94635608 Msa0966440:intron 5.0%
TTCAAGCTCATGATGGCCAC+TGG + chr6_3:94632579-94632598 Msa0966440:CDS 50.0%
GGATCCCTTGATGAGGTTCT+AGG + chr6_3:94632856-94632875 Msa0966440:CDS 50.0%
GAGGTCCTAGAACCTCATCA+AGG - chr6_3:94632864-94632883 None:intergenic 50.0%
GGGAAGGGATCCTCATCTAA+AGG - chr6_3:94633292-94633311 None:intergenic 50.0%
CTTTGATTCTGAGCAGGGGA+AGG - chr6_3:94633308-94633327 None:intergenic 50.0%
CTCCGTATCCTCCTTCACAT+CGG + chr6_3:94633385-94633404 Msa0966440:intron 50.0%
! TGAGCTGTGGGTTATTCCAG+AGG - chr6_3:94633730-94633749 None:intergenic 50.0%
TGCGGTCATCATTGTGCACA+AGG + chr6_3:94633956-94633975 Msa0966440:intron 50.0%
AGGTGACAGAACGAAGATGG+TGG + chr6_3:94634272-94634291 Msa0966440:intron 50.0%
!! GACAGAACGAAGATGGTGGA+TGG + chr6_3:94634276-94634295 Msa0966440:intron 50.0%
!! CAGAACGAAGATGGTGGATG+GGG + chr6_3:94634278-94634297 Msa0966440:intron 50.0%
CTTGGAGAAGGACCTGAAGA+TGG + chr6_3:94634365-94634384 Msa0966440:CDS 50.0%
GCCTTGTCTTCACCATCTTC+AGG - chr6_3:94634380-94634399 None:intergenic 50.0%
CCACTAAACCACCATGGTCA+AGG - chr6_3:94634427-94634446 None:intergenic 50.0%
CCTTGACCATGGTGGTTTAG+TGG + chr6_3:94634424-94634443 Msa0966440:CDS 50.0%
ACCCAGAACTTTCCCCATGA+TGG - chr6_3:94634455-94634474 None:intergenic 50.0%
!! ATGGGGAAAGTTCTGGGTCA+CGG + chr6_3:94634457-94634476 Msa0966440:CDS 50.0%
CTTGGAGTTTATGAGTGGCG+AGG + chr6_3:94634575-94634594 Msa0966440:CDS 50.0%
CCCGAATCCCTGATTACTTC+TGG + chr6_3:94635299-94635318 Msa0966440:CDS 50.0%
AGTCAGAGACTTGCCAACCT+TGG - chr6_3:94635902-94635921 None:intergenic 50.0%
CATTACTGCTCTGTAGCGAG+AGG - chr6_3:94636133-94636152 None:intergenic 50.0%
CTCTCGCTACAGAGCAGTAA+TGG + chr6_3:94636131-94636150 Msa0966440:CDS 50.0%
TCGCTACAGAGCAGTAATGG+CGG + chr6_3:94636134-94636153 Msa0966440:CDS 50.0%
!!! GAATTTTGAGGCTCCCAAGC+AGG - chr6_3:94636164-94636183 None:intergenic 50.0%
! CACAAAACCCTGATGGATCC+TGG + chr6_3:94636585-94636604 Msa0966440:CDS 50.0%
!! TGGCACTTGGTTTGCTGTAG+AGG + chr6_3:94636775-94636794 Msa0966440:CDS 50.0%
!! GGCACTTGGTTTGCTGTAGA+GGG + chr6_3:94636776-94636795 Msa0966440:CDS 50.0%
GTAGAGGGACTAACAGCTTG+TGG + chr6_3:94636791-94636810 Msa0966440:CDS 50.0%
CAAAGCAGCTTCCTAATGGG+GGG + chr6_3:94636867-94636886 Msa0966440:CDS 50.0%
TTGTTGTCCCTTATCGGTGC+AGG + chr6_3:94637049-94637068 Msa0966440:CDS 50.0%
TGTTGTCCCTTATCGGTGCA+GGG + chr6_3:94637050-94637069 Msa0966440:CDS 50.0%
ATTCCACGGTGTATGGGTGT+AGG - chr6_3:94637197-94637216 None:intergenic 50.0%
CATCTTTCCCATATGGGCTC+TGG + chr6_3:94637422-94637441 Msa0966440:CDS 50.0%
TACTCTCCCAGAGCCCATAT+GGG - chr6_3:94637432-94637451 None:intergenic 50.0%
ATACTCTCCCAGAGCCCATA+TGG - chr6_3:94637433-94637452 None:intergenic 50.0%
CTCACTACCCAGGTGCTAAT+TGG + chr6_3:94637508-94637527 Msa0966440:three_prime_UTR 50.0%
AAAGGGCCAGCAGATTCTGC+AGG - chr6_3:94632605-94632624 None:intergenic 55.0%
TATGCGAATTGTGGTCGGCG+AGG + chr6_3:94634026-94634045 Msa0966440:intron 55.0%
GTAGGACCTAGGTATGCACC+TGG - chr6_3:94634656-94634675 None:intergenic 55.0%
GGTTGAAGACCCGAACTCAG+AGG + chr6_3:94635258-94635277 Msa0966440:CDS 55.0%
TGACTTCCTGAAGGCCTCAC+AGG + chr6_3:94635797-94635816 Msa0966440:CDS 55.0%
CAACTACCTGTGAGGCCTTC+AGG - chr6_3:94635806-94635825 None:intergenic 55.0%
CGCTACAGAGCAGTAATGGC+GGG + chr6_3:94636135-94636154 Msa0966440:CDS 55.0%
!! TAATGGCGGGTTCCCTGCTT+GGG + chr6_3:94636148-94636167 Msa0966440:CDS 55.0%
TACTCCACAGGTACGGCTGT+TGG + chr6_3:94636735-94636754 Msa0966440:intron 55.0%
ACTCCACAGGTACGGCTGTT+GGG + chr6_3:94636736-94636755 Msa0966440:intron 55.0%
! AACCTGCCCTGCACCGATAA+GGG - chr6_3:94637059-94637078 None:intergenic 55.0%
! TAACCTGCCCTGCACCGATA+AGG - chr6_3:94637060-94637079 None:intergenic 55.0%
CTAGCTTAGCTCCTGCCTCT+TGG + chr6_3:94637098-94637117 Msa0966440:intron 55.0%
GATCCTACACCCATACACCG+TGG + chr6_3:94637191-94637210 Msa0966440:CDS 55.0%
CAGCAGATTCTGCAGGCCAG+TGG - chr6_3:94632598-94632617 None:intergenic 60.0%
! CACTGGCCTGCAGAATCTGC+TGG + chr6_3:94632596-94632615 Msa0966440:CDS 60.0%
GCACTGAGGCTGCTTGGAGA+AGG + chr6_3:94634353-94634372 Msa0966440:CDS 60.0%
GTCTCTGACTGCACCGCAGA+AGG + chr6_3:94635912-94635931 Msa0966440:CDS 60.0%
CTGCACCGCAGAAGGACTCA+AGG + chr6_3:94635920-94635939 Msa0966440:CDS 60.0%
!! GTAATGGCGGGTTCCCTGCT+TGG + chr6_3:94636147-94636166 Msa0966440:CDS 60.0%
CTCCACAGGTACGGCTGTTG+GGG + chr6_3:94636737-94636756 Msa0966440:intron 60.0%
TTCCCCAACAGCCGTACCTG+TGG - chr6_3:94636742-94636761 None:intergenic 60.0%
AGCAGCTTCCTAATGGGGGG+TGG + chr6_3:94636870-94636889 Msa0966440:CDS 60.0%
GCAGCTTCCTAATGGGGGGT+GGG + chr6_3:94636871-94636890 Msa0966440:CDS 60.0%
CAGCTTCCTAATGGGGGGTG+GGG + chr6_3:94636872-94636891 Msa0966440:CDS 60.0%
CTTTCTCCCCACCCCCCATT+AGG - chr6_3:94636881-94636900 None:intergenic 60.0%
GTCCCTTATCGGTGCAGGGC+AGG + chr6_3:94637054-94637073 Msa0966440:CDS 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 94632452 94637740 94632452 ID=Msa0966440;Name=Msa0966440
chr6_3 mRNA 94632452 94637740 94632452 ID=Msa0966440-mRNA-1;Parent=Msa0966440;Name=Msa0966440-mRNA-1;_AED=0.21;_eAED=0.21;_QI=0|1|0.92|1|1|1|14|243|699
chr6_3 exon 94632452 94632643 94632452 ID=Msa0966440-mRNA-1:exon:17530;Parent=Msa0966440-mRNA-1
chr6_3 exon 94632835 94632924 94632835 ID=Msa0966440-mRNA-1:exon:17531;Parent=Msa0966440-mRNA-1
chr6_3 exon 94634281 94634478 94634281 ID=Msa0966440-mRNA-1:exon:17532;Parent=Msa0966440-mRNA-1
chr6_3 exon 94634572 94634656 94634572 ID=Msa0966440-mRNA-1:exon:17533;Parent=Msa0966440-mRNA-1
chr6_3 exon 94634754 94634920 94634754 ID=Msa0966440-mRNA-1:exon:17534;Parent=Msa0966440-mRNA-1
chr6_3 exon 94635046 94635348 94635046 ID=Msa0966440-mRNA-1:exon:17535;Parent=Msa0966440-mRNA-1
chr6_3 exon 94635699 94635941 94635699 ID=Msa0966440-mRNA-1:exon:17536;Parent=Msa0966440-mRNA-1
chr6_3 exon 94636044 94636199 94636044 ID=Msa0966440-mRNA-1:exon:17537;Parent=Msa0966440-mRNA-1
chr6_3 exon 94636303 94636349 94636303 ID=Msa0966440-mRNA-1:exon:17538;Parent=Msa0966440-mRNA-1
chr6_3 exon 94636463 94636606 94636463 ID=Msa0966440-mRNA-1:exon:17539;Parent=Msa0966440-mRNA-1
chr6_3 exon 94636745 94636922 94636745 ID=Msa0966440-mRNA-1:exon:17540;Parent=Msa0966440-mRNA-1
chr6_3 exon 94636995 94637075 94636995 ID=Msa0966440-mRNA-1:exon:17541;Parent=Msa0966440-mRNA-1
chr6_3 exon 94637182 94637265 94637182 ID=Msa0966440-mRNA-1:exon:17542;Parent=Msa0966440-mRNA-1
chr6_3 exon 94637366 94637740 94637366 ID=Msa0966440-mRNA-1:exon:17543;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94632452 94632643 94632452 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94632835 94632924 94632835 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94634281 94634478 94634281 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94634572 94634656 94634572 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94634754 94634920 94634754 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94635046 94635348 94635046 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94635699 94635941 94635699 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94636044 94636199 94636044 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94636303 94636349 94636303 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94636463 94636606 94636463 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94636745 94636922 94636745 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94636995 94637075 94636995 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94637182 94637265 94637182 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 CDS 94637366 94637497 94637366 ID=Msa0966440-mRNA-1:cds;Parent=Msa0966440-mRNA-1
chr6_3 three_prime_UTR 94637498 94637740 94637498 ID=Msa0966440-mRNA-1:three_prime_utr;Parent=Msa0966440-mRNA-1
Gene Sequence

>Msa0966440

ATGCAGCTAAAAAAAGAGAATCAATGTAGCCCCATTCCACCAGCAGTTAAACTGAGAGAAGAAGATATCATAACAGGGGAAGCATTGATTACAACAATAAGAAGGGCTACAAGTTTCTATTCCTCAATTCAAGCTCATGATGGCCACTGGCCTGCAGAATCTGCTGGCCCTTTGTTTTTTGTTCAACCATTGGTAATGGCCCTCTATGTTACAGGATCCCTTGATGAGGTTCTAGGACCTCAACATAAGAAGGAAATTGTTCGGTATTTATATAATCACCAGAACGAAGATGGTGGATGGGGATTCCATATAGAGGGTCATAGCACAATGTTTGGATCAGCATTGAGCTATATTGCACTGAGGCTGCTTGGAGAAGGACCTGAAGATGGTGAAGACAAGGCAATGGAGAGATGCAGAAATTGGATCCTTGACCATGGTGGTTTAGTGGCTATTCCATCATGGGGAAAGTTCTGGGTCACGGTACTTGGAGTTTATGAGTGGCGAGGCTGCAATCCACTTCCACCAGAATTCTGGTTTCTACCAAAATTCACCCCTATTCATCCAGGGAAAATGTTGTGCTACTGTCGGTTAGTTTACATGCCCATGTCATATCTATATGGGAAGAAGTTTGTGGGCCCTATCACTGACCTAATCAAATCACTGAGAGAAGAACTGTACAATCAACCTTATGATCAAATCAACTGGAACAAAGCCCGGAATACTATTGCTAAGGAGGATCTGTACTACCCACATCCTATGATTCAAGATATGTTATGGGGATTTCTTTATCATGTGGGAGAGCCTTTTCTGAATTGCTGGCCTTTCACCAAGCTTAGACAGAAGGCATTAGAAATTGCAATTAATCATGTGCGTTACGAGGATGAGAACAGTAGATACCTTTGCATTGGAAGTGTAGAGAAGGTATTATGTTTGATAGCGCGTTGGGTTGAAGACCCGAACTCAGAGGCATACAAACTTCATTTAGCCCGAATCCCTGATTACTTCTGGCTTGCAGAAGATGGCTTGAAAATCCAGAGCTTTGGGTGTCAAATGTGGGATGCAGCATTTGCTATACAAGCAATACTTGCTTGTAACGTGAGTGAAGAGTATGGTCCTACACTTCGGAAAGCACATGACTTCCTGAAGGCCTCACAGGTAGTTGAAAATCCATCCGGTGAGTTCAAAGCAATGTACAGACACATATGCAAAGGATCGTGGACATTCTCAATGCATGACCAAGGTTGGCAAGTCTCTGACTGCACCGCAGAAGGACTCAAGGCCGCACTCCTGTTGTCAAAAATGCCAACTGATCTTGTTGGAGAAAAATTGGAAACAGAGCGACTCTACGATGCTGTTAATGTCATCCTCTCGCTACAGAGCAGTAATGGCGGGTTCCCTGCTTGGGAGCCTCAAAATTCTTACAGTTGGTTAGAGAAATTCAATCCAACTGAATTCTTTGAAGACACACTGATTGAGAGGGAGTATGTTGAGTGCACTGGTTCTGCAATGCAAGCCCTGTATCTCTTCACAAAGCTACACCCAACTCATAGAGCTAAGGAAATACATCACTGCCTTTCCAAAGCAATTCATTTCATTGAAAACACACAAAACCCTGATGGATCCTGGTACGGCTGTTGGGGAATTTGCTATACGTATGGCACTTGGTTTGCTGTAGAGGGACTAACAGCTTGTGGAAAGAATTACCGTAACAGTCCTTCCTTGCAAAAAGCTTGTCAATTTTTATTGTCAAAGCAGCTTCCTAATGGGGGGTGGGGAGAAAGTTATTTGTCAAGCCAAAACAAGGTATATACAAACCTAGAAGACAACCGTGCAAATTTAGTTCAAACTTCGTGGGCTTTGTTGTCCCTTATCGGTGCAGGGCAGGCTGATATAGATCCTACACCCATACACCGTGGAATGAAGTTAATAATCAATTCACAGATGGAAGATGGAGATTTCCCACAACAGGAGATAACAGGAGTATTTATGAGGAATTGTACCCTGAACTACTCATCATATCGAAACATCTTTCCCATATGGGCTCTGGGAGAGTATCGTCACCGAGTCTTGTCTGCACAAATTCCAAATGCTGCACCTTGA
Protein sequence

>Msa0966440

MQLKKENQCSPIPPAVKLREEDIITGEALITTIRRATSFYSSIQAHDGHWPAESAGPLFFVQPLVMALYVTGSLDEVLGPQHKKEIVRYLYNHQNEDGGWGFHIEGHSTMFGSALSYIALRLLGEGPEDGEDKAMERCRNWILDHGGLVAIPSWGKFWVTVLGVYEWRGCNPLPPEFWFLPKFTPIHPGKMLCYCRLVYMPMSYLYGKKFVGPITDLIKSLREELYNQPYDQINWNKARNTIAKEDLYYPHPMIQDMLWGFLYHVGEPFLNCWPFTKLRQKALEIAINHVRYEDENSRYLCIGSVEKVLCLIARWVEDPNSEAYKLHLARIPDYFWLAEDGLKIQSFGCQMWDAAFAIQAILACNVSEEYGPTLRKAHDFLKASQVVENPSGEFKAMYRHICKGSWTFSMHDQGWQVSDCTAEGLKAALLLSKMPTDLVGEKLETERLYDAVNVILSLQSSNGGFPAWEPQNSYSWLEKFNPTEFFEDTLIEREYVECTGSAMQALYLFTKLHPTHRAKEIHHCLSKAIHFIENTQNPDGSWYGCWGICYTYGTWFAVEGLTACGKNYRNSPSLQKACQFLLSKQLPNGGWGESYLSSQNKVYTNLEDNRANLVQTSWALLSLIGAGQADIDPTPIHRGMKLIINSQMEDGDFPQQEITGVFMRNCTLNYSSYRNIFPIWALGEYRHRVLSAQIPNAAP*